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modules.json
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{
"name": "nf-cmgg/preprocessing",
"homePage": "https://github.com/nf-cmgg/preprocessing",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcl2fastq": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bcl_demultiplex"]
},
"bclconvert": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bcl_demultiplex", "modules"]
},
"biobambam/bamsormadup": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/biobambam/bamsormadup/biobambam-bamsormadup.diff"
},
"bowtie2/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dna", "modules"],
"patch": "modules/nf-core/bowtie2/align/bowtie2-align.diff"
},
"bwa/mem": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dna"],
"patch": "modules/nf-core/bwa/mem/bwa-mem.diff"
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dna"],
"patch": "modules/nf-core/bwamem2/mem/bwamem2-mem.diff"
},
"dragmap/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dna"],
"patch": "modules/nf-core/dragmap/align/dragmap-align.diff"
},
"fastp": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastp/fastp.diff"
},
"md5sum": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/mosdepth/mosdepth.diff"
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collecthsmetrics/picard-collecthsmetrics.diff"
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collectmultiplemetrics/picard-collectmultiplemetrics.diff"
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collectwgsmetrics/picard-collectwgsmetrics.diff"
},
"samtools/cat": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/cat/samtools-cat.diff"
},
"samtools/convert": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/convert/samtools-convert.diff"
},
"samtools/coverage": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/coverage/samtools-coverage.diff"
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/import": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/sormadup": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/sormadup/samtools-sormadup.diff"
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/sort/samtools-sort.diff"
},
"samtools/stats": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/stats/samtools-stats.diff"
},
"snapaligner/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dna", "modules"],
"patch": "modules/nf-core/snapaligner/align/snapaligner-align.diff"
},
"star/align": {
"branch": "master",
"git_sha": "3c259f0ac1ed9ae3f6b835461d054edffc60120e",
"installed_by": ["modules"],
"patch": "modules/nf-core/star/align/star-align.diff"
}
}
},
"subworkflows": {
"nf-core": {
"bcl_demultiplex": {
"branch": "master",
"git_sha": "a6e6bec1b1da613b89a6c0a3a46713f880cf5aca",
"installed_by": ["subworkflows"]
},
"fastq_align_dna": {
"branch": "master",
"git_sha": "0fa40bbf85955171ec197334ac70a1197fba600d",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "56372688d8979092cafbe0c5c3895b491166ca1c",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}