Local processes to nf-core/modules

[d4straub]

Several processes are using tools that are maybe interesting also in other pipeline and could be made available in nf-core/modules, such as:

• modules/local/canu.nf
• modules/local/dfast.nf
• modules/local/medaka.nf
• modules/local/miniasm.nf
• modules/local/nanopolish.nf
• modules/local/porechop.nf

Other processes use local modules because the nf-core modules were not applicable:

• modules/local/pycoqc.nf -> only accepts fast5 summary files, no raw fast5 files
• modules/local/nanoplot.nf -> only accepts accepts only .fastq.gz, not .fq.gz
• modules/local/minimap_align.nf -> inout path does not match nf.core module, might be possible to fix in bacass
• modules/local/unicycler.nf -> only allows short read assembly (but not hybrid and long)

[Daniel-VM]

[UPDATE] some locals have now an nf-core version and have been refactor into nf-core modules (#86):

Tool	Previous version	New version
Canu	2.1.1	2.2
Minimap2	2.21	2.2
Miniasm	0.3	-
Racon	1.4.20-1	-
Nanoplot (patch)	1.38.0	1.41.6
Porechop	0.2.4	0.2.4

Still working on the remaining 👍🏾