From 1f63e48cefe33781852e0ccf45bf12564490a016 Mon Sep 17 00:00:00 2001
From: Graeme Grimes <graeme.grimes@ed.ac.uk>
Date: Mon, 6 Jan 2025 14:18:22 +0000
Subject: [PATCH] Update eddie.config singularity runtime options

add --scratch /dev/shm to singularity runtime options to help singularity verstion 4 run on eddie HPC
---
 conf/eddie.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/eddie.config b/conf/eddie.config
index 707b71040..8391bf65f 100644
--- a/conf/eddie.config
+++ b/conf/eddie.config
@@ -46,7 +46,7 @@ env {
 
 singularity {
     envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
-    runOptions   = '-p -B "$TMPDIR"'
+    runOptions   = '-p --scratch /dev/shm -B "$TMPDIR"'
     enabled      = true
     autoMounts   = true
     cacheDir     = "/exports/igmm/eddie/BioinformaticsResources/nfcore/singularity-images"