From 85ddb3191a6a2774200e9362d1a9a2c0e6f78f4d Mon Sep 17 00:00:00 2001 From: maxulysse Date: Fri, 15 Sep 2023 13:00:08 +0200 Subject: [PATCH] remove aws_tower profile --- .github/workflows/main.yml | 1 - README.md | 3 --- conf/aws_tower.config | 21 --------------------- docs/aws_tower.md | 5 ----- 4 files changed, 30 deletions(-) delete mode 100644 conf/aws_tower.config delete mode 100644 docs/aws_tower.md diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index cef4c078f..7900ad98f 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -32,7 +32,6 @@ jobs: - "abims" - "adcra" - "alice" - - "aws_tower" - "awsbatch" - "azurebatch" - "bi" diff --git a/README.md b/README.md index 2ad9fd807..6d30a7c88 100644 --- a/README.md +++ b/README.md @@ -91,7 +91,6 @@ Currently documentation is available for the following systems: - [ADCRA](docs/adcra.md) - [ALICE](docs/alice.md) - [AWSBATCH](docs/awsbatch.md) -- [AWS_TOWER](docs/aws_tower.md) - [AZUREBATCH](docs/azurebatch.md) - [BIGPURPLE](docs/bigpurple.md) - [BI](docs/bi.md) @@ -225,8 +224,6 @@ Currently documentation is available for the following pipelines within specific - [SBC_SHARC](docs/pipeline/atacseq/sbc_sharc.md) - chipseq - [SBC_SHARC](docs/pipeline/chipseq/sbc_sharc.md) -- demultiplex - - [AWS_TOWER](docs/pipeline/demultiplex/aws_tower.md) - eager - [EVA](docs/pipeline/eager/eva.md) - funcscan diff --git a/conf/aws_tower.config b/conf/aws_tower.config deleted file mode 100644 index ab7786d4c..000000000 --- a/conf/aws_tower.config +++ /dev/null @@ -1,21 +0,0 @@ -//Nextflow config file for running on AWS batch -params { - config_profile_description = 'AWS Batch with Tower Profile' - config_profile_contact = 'Gisela Gabernet (@ggabernet)' - config_profile_url = 'https://aws.amazon.com/batch/' -} - -timeline { - overwrite = true -} -report { - overwrite = true -} -trace { - overwrite = true -} -dag { - overwrite = true -} - -process.executor = 'awsbatch' diff --git a/docs/aws_tower.md b/docs/aws_tower.md deleted file mode 100644 index 6274bf394..000000000 --- a/docs/aws_tower.md +++ /dev/null @@ -1,5 +0,0 @@ -# nf-core/configs: AWS Batch with Tower Configuration - -To be used when submitting jobs to AWS Batch by using Tower Forge. If you are not using Tower Forge, consider using the profile `awsbatch` where you can directly specify the Batch queue, AWS region and AWS cli path. - -This profile defines `awsbatch` as executor, and allows `overwrite` of `trace`, `timeline`, `report` and `dag` to allow resuming pipelines.