diff --git a/nextflow.config b/nextflow.config index 22835984..46d3ca99 100644 --- a/nextflow.config +++ b/nextflow.config @@ -21,7 +21,7 @@ params { // Parsing 10x bam files tenx_tgz = false - tenx_tags = "CB,XC,UB,XM,XB,RG,GN,GX,TX" + tenx_tags = "CB,CR,CY,XC,UB,UR,UY,AN,TR,XM,XB,RG,GN,GX,TX,NH,HI,AS,nM,RE,MM,pa,xf,fb,fr,fq,fx" tenx_cell_barcode_pattern = '(CB|XC):Z:([ACGT]+)(\\-1)?' tenx_molecular_barcode_pattern = '(UB|XB|XM):Z:([ACGT]+)' tenx_min_umi_per_cell = 0