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KMERMAID: Convert all parameter docs to JSON schema #133

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apeltzer opened this issue Mar 16, 2021 · 1 comment · May be fixed by #148
Open

KMERMAID: Convert all parameter docs to JSON schema #133

apeltzer opened this issue Mar 16, 2021 · 1 comment · May be fixed by #148
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@maxibor
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enhancement New feature or request

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@apeltzer
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Hi!

this is not necessarily an issue with the pipeline, but in order to streamline the documentation group next week for the hackathon, I'm opening issues in all repositories / pipeline repos that might need this update to switch from parameter docs to auto-generated documentation based on the JSON schema.

This will then supersede any further parameter documentation, thus making things a bit easier :-)

If this doesn't apply (anymore), please close the issue. Otherwise, I'm hoping to have some helping hands on this next week in the documentation team on Slack https://nfcore.slack.com/archives/C01QPMKBYNR
@apeltzer apeltzer added the enhancement New feature or request label Mar 16, 2021
@jfy133 jfy133 moved this to Todo in Hackathon-March-2022 Mar 1, 2022
@maxibor maxibor self-assigned this Mar 17, 2022
@maxibor
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maxibor commented Mar 17, 2022

The schema does exist, but needs an update, and default value change for some string parameters to null instead of false in nextflow.config

@maxibor maxibor moved this from Todo to In Progress in Hackathon-March-2022 Mar 17, 2022
@maxibor maxibor linked a pull request Mar 17, 2022 that will close this issue
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@maxibor maxibor linked a pull request Mar 17, 2022 that will close this issue
Update schema and change default String values to null instead of false #148
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@maxibor maxibor moved this from In Progress to Needs Review in Hackathon-March-2022 Mar 21, 2022
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Update schema and change default String values to null instead of false maxibor/kmermaid
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@apeltzer @maxibor