From 5e799f591038f3387beafe5735aa3d28c5a40273 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 22 Jan 2025 11:30:27 +0100 Subject: [PATCH] Remove debugging dumps --- workflows/mag.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/workflows/mag.nf b/workflows/mag.nf index b074c4b6..ffe5f8ef 100644 --- a/workflows/mag.nf +++ b/workflows/mag.nf @@ -806,10 +806,10 @@ workflow MAG { ch_multiqc_files = ch_multiqc_files.mix(KRAKEN2.out.report.collect { it[1] }.ifEmpty([])) if (!params.skip_quast) { - ch_multiqc_files = ch_multiqc_files.mix(QUAST.out.report.dump(tag: 'pre-collect').collect().dump(tag: 'post-collect').ifEmpty([])) + ch_multiqc_files = ch_multiqc_files.mix(QUAST.out.report.collect().ifEmpty([])) if (!params.skip_binning) { - ch_multiqc_files = ch_multiqc_files.mix(QUAST_BINS.out.dir.dump(tag: 'pre-collect-bin').collect().dump(tag: 'post-collect-bin').ifEmpty([])) + ch_multiqc_files = ch_multiqc_files.mix(QUAST_BINS.out.dir.collect().ifEmpty([])) } } @@ -827,7 +827,7 @@ workflow MAG { MULTIQC( - ch_multiqc_files.collect().dump(tag: 'final_mqc'), + ch_multiqc_files.collect(), ch_multiqc_config.toList(), ch_multiqc_custom_config.toList(), ch_multiqc_logo.toList(),