diff --git a/docs/images/mag_workflow.png b/docs/images/mag_workflow.png index 0d7c805f..2a2abfa3 100644 Binary files a/docs/images/mag_workflow.png and b/docs/images/mag_workflow.png differ diff --git a/docs/images/mag_workflow.svg b/docs/images/mag_workflow.svg index b5c9fa8d..e2039d81 100644 --- a/docs/images/mag_workflow.svg +++ b/docs/images/mag_workflow.svg @@ -350,11 +350,11 @@ borderopacity="1.0" inkscape:pageopacity="0.0" inkscape:pageshadow="2" - inkscape:zoom="0.66558755" - inkscape:cx="641.53844" - inkscape:cy="333.53989" + inkscape:zoom="1.8825659" + inkscape:cx="392.01815" + inkscape:cy="508.34874" inkscape:document-units="mm" - inkscape:current-layer="g21914" + inkscape:current-layer="g3-6" showgrid="true" inkscape:window-width="1664" inkscape:window-height="1051" @@ -1267,7 +1267,7 @@ y="9.9461374" x="151.11928" id="tspan4772-6-5-1-9-3" - sodipodi:role="line">porechop_ABIiporechop_ABI + + + +image/svg+xmlTaxonomicclassificationCentrifugeKraken2VisualizationKronaDomain classificationReportingMultiQC(MAG summary)tsvDBShort reads(required)Adapter/qualitytrimmingBBNormfastpAdapterRemovalHost read removalDepth normalisationBowtie2Remove PhiXBowtie2FastQCEvaluation csvLong reads(optional)NanoPlotEvaluationNanoLyseRemove LambdaFiltlongQuality filteringAdapter/qualitytrimmingPorechopporechop_ABIDBTaxonomic classificationCATGTDB-TkTiaraMetaEukGenome annotationPROKKAProtein-codinggene predictionPRODIGALVirus identificationAssembly(sample- or group-wise)EvaluationQUASTaDNA ValidationpyDamageFreebayesBCFToolsgeNomadSPAdesMEGAHITSPAdesHybridDBBinningMetaBAT2MaxBin2CONCOCTEvaluationBUSCOCheckMGUNCQUAST(Abundance estimation and visualization)v3.2Binning refinementDAS Toolnf-core/magCC-BY 4.0 Design originally by Zandra FagernäsBin post-processing