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Add anndata container as an output format #26

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FloWuenne opened this issue Nov 28, 2023 · 1 comment
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Add anndata container as an output format #26

FloWuenne opened this issue Nov 28, 2023 · 1 comment
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enhancement Improvement for existing functionality

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@FloWuenne
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Description of feature

Instead of just providing the quantified cell table, we could support export of data in the popular Anndata format as described in the Squidpy documentation:

https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_read_spatial.html

This would facilitate easy downstream usage of Liana+ and other anndata compatible frameworks.
@FloWuenne FloWuenne added the enhancement Improvement for existing functionality label Nov 28, 2023
@FloWuenne FloWuenne self-assigned this Nov 28, 2023
@FloWuenne FloWuenne mentioned this issue Jan 4, 2024
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@FloWuenne
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Added with #49 !

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