diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf index 8c3b99ba3..fc530f847 100755 --- a/workflows/rnaseq/main.nf +++ b/workflows/rnaseq/main.nf @@ -271,7 +271,7 @@ workflow RNASEQ { // Name sort BAM before passing to Salmon SAMTOOLS_SORT ( - umi_dedup_transcriptome.out.bam, + UMI_DEDUP_TRANSCRIPTOME.out.bam, ch_fasta.map { [ [:], it ] } )