From 9b62f064d0cb74a01995233079b7ed0bddbcf495 Mon Sep 17 00:00:00 2001 From: Rob Syme Date: Thu, 5 Dec 2024 18:55:29 -0500 Subject: [PATCH 1/2] Move channel operations outside of the onComplete() block --- subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf b/subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf index 1745f8be6..5e8820ddc 100644 --- a/subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf +++ b/subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf @@ -116,6 +116,8 @@ workflow PIPELINE_COMPLETION { id, status -> pass_strand_check[id] = status } + def multiqc_report_list = multiqc_report.toList() + // // Completion email and summary // @@ -128,7 +130,7 @@ workflow PIPELINE_COMPLETION { plaintext_email, outdir, monochrome_logs, - multiqc_report.toList() + multiqc_report_list.getVal() ) } From 532497b0d861fd31b8e8a88337ba168d6b858964 Mon Sep 17 00:00:00 2001 From: Rob Syme Date: Thu, 5 Dec 2024 19:00:48 -0500 Subject: [PATCH 2/2] Add changelog entry --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1fa69957a..c5c417dd3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -16,6 +16,7 @@ Special thanks to the following for their contributions to the release: - [PR #1369](https://github.com/nf-core/rnaseq/pull/1369) - Add umicollapse as an alternative to umi-tools - [PR #1461](https://github.com/nf-core/rnaseq/pull/1461) - Add FASTQ linting during preprocessing +- [PR #1463](https://github.com/nf-core/rnaseq/pull/1463) - Move channel operations outside of the onComplete() block ### Software dependencies