No output and no run for variant calling

[dazauzai]

Description of the bug

I run the controlfreec
I done know why.sheet6_with_gender.csv
nf-params.json

Command used and terminal output

executor >  local (1)
executor >  local (1)
executor >  local (1)
executor >  local (1)
executor >  local (1)
[-        ] NFCORE_SAREK:PREPARE_GENOME:BWAMEM1_INDEX                              -
executor >  local (1)
[-        ] NFCORE_SAREK:PREPARE_GENOME:BWAMEM1_INDEX                              -
[-        ] NFCORE_SAREK:PREPARE_GENOME:BWAMEM2_INDEX                              -
[-        ] NFCORE_SAREK:PREPARE_GENOME:DRAGMAP_HASHTABLE                          -
[-        ] NFCORE_SAREK:PREPARE_GENOME:GATK4_CREATESEQUENCEDICTIONARY             -
[-        ] NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN                          -
[-        ] NFCORE_SAREK:PREPARE_GENOME:SAMTOOLS_FAIDX                             -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_BCFTOOLS_ANNOTATIONS                 -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_DBSNP                                -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_GERMLINE_RESOURCE                    -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_KNOWN_SNPS                           -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_KNOWN_INDELS                         -
[-        ] NFCORE_SAREK:PREPARE_GENOME:TABIX_PON                                  -
[-        ] NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES                              -
[-        ] NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI                                 -
[-        ] NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC                                   -
[-        ] NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT                                   -
[31/c7686f] NFC…NTERVALS:CREATE_INTERVALS_BED (V3_IDT_03861023_CML_Ph_v3_hg38.bed) | 1 of 1, cached: 1 ✔
[71/044c11] NFC…INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_36859613-36859732) | 19 of 19, cached: 19 ✔
[7b/06569e] NFC…ABIX_BGZIPTABIX_INTERVAL_COMBINED (V3_IDT_03861023_CML_Ph_v3_hg38) | 1 of 1, cached: 1 ✔
[-        ] NFCORE_SAREK:DOWNLOAD_CACHE_SNPEFF_VEP:ENSEMBLVEP_DOWNLOAD             -
[-        ] NFCORE_SAREK:DOWNLOAD_CACHE_SNPEFF_VEP:SNPEFF_DOWNLOAD                 -
[-        ] NFCORE_SAREK:SAREK:BAM_TO_CRAM                                         -
[-        ] NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS          -
[-        ] NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH                -
[-        ] NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP     -
[-        ] NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM     -
[c4/407068] NFCORE_SAREK:SAREK:MULTIQC                                             | 1 of 1 ✔
Plus 26 more processes waiting for tasks…
-[nf-core/sarek] Pipeline completed successfully-
the running just looks like this, no error report, but no variant calling result or run exsist.

Relevant files

No response

System information

No response