From 30da336aec987091dd5ed8453de53ee77c8f66ee Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 11 Dec 2024 15:56:53 +0000 Subject: [PATCH 1/2] fix test string --- tests/test_fastp.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/tests/test_fastp.yml b/tests/test_fastp.yml index 55e714b8c2..3d70bf120d 100644 --- a/tests/test_fastp.yml +++ b/tests/test_fastp.yml @@ -78,7 +78,10 @@ - path: results/reports/fastp/test - path: results/reports/fastqc/test-test_L1 - path: results/reports/markduplicates/test/test.md.cram.metrics - contains: ["test 17482 890 170 1047682 12552 69 0 0.65881"] + contains: + [ + "LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE", + ] - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt From 85b2de10695d5b13d8558b344f9d61f6e14e444f Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 11 Dec 2024 15:58:07 +0000 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 60312adc1e..eca7af51a4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -53,6 +53,7 @@ A set of connecting glaciers. - [1745](https://github.com/nf-core/sarek/pull/1745) - Fix bug where workflow can hang if the email parameter is set - [1746](https://github.com/nf-core/sarek/pull/1746) - Fix Sentieon module inputs - [1752](https://github.com/nf-core/sarek/pull/1752) - Add `indexcov` and `lofreq` to full size tests. Amend overview figures. +- [1754](https://github.com/nf-core/sarek/pull/1754) - Fix test string ### Removed