From 257ed47b941aaa151198b75bee7d291313dcdc87 Mon Sep 17 00:00:00 2001 From: svarona Date: Wed, 17 Jan 2024 15:59:15 +0100 Subject: [PATCH] Fixed additional annot subworkflow for new modules version --- subworkflows/local/additional_annot.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/subworkflows/local/additional_annot.nf b/subworkflows/local/additional_annot.nf index cde476e2..98c66417 100644 --- a/subworkflows/local/additional_annot.nf +++ b/subworkflows/local/additional_annot.nf @@ -46,9 +46,9 @@ workflow ADDITIONAL_ANNOT { VCF_BGZIP_TABIX_STATS ( SNPEFF_ANN.out.vcf, - [], - [], - [] + [ [:], [] ], + [ [:], [] ], + [ [:], [] ] ) ch_versions = ch_versions.mix(VCF_BGZIP_TABIX_STATS.out.versions) @@ -66,7 +66,7 @@ workflow ADDITIONAL_ANNOT { ch_versions = ch_versions.mix(BCFTOOLS_QUERY.out.versions.first()) MAKE_VARIANTS_LONG_TABLE_ADDITIONAL ( - BCFTOOLS_QUERY.out.txt.collect{it[1]}, + BCFTOOLS_QUERY.out.output.collect{it[1]}, SNPSIFT_EXTRACTFIELDS.out.txt.collect{it[1]}.ifEmpty([]), pangolin.collect{it[1]}.ifEmpty([]) )