From afd2792d163abcd6ab7593ebdc5ef200b7316393 Mon Sep 17 00:00:00 2001 From: Nicholas Sunderland Date: Thu, 21 Nov 2024 10:48:19 +0000 Subject: [PATCH] update QC article --- vignettes/hermes_qc_script.Rmd | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/vignettes/hermes_qc_script.Rmd b/vignettes/hermes_qc_script.Rmd index edb7f77..9f4a9e0 100644 --- a/vignettes/hermes_qc_script.Rmd +++ b/vignettes/hermes_qc_script.Rmd @@ -48,9 +48,10 @@ The main required inputs required are in the table below, we likely will need to | --out | string | output directory to write file and .pngs | NA | | --gwas_[colname] | string | standard column names from mapping | NA | | --ref_[colname] | string | standard column names from reference file| NA | +| --ancestry | string | GWAS meta-data input | Meta-data UI | | --no_indel_alleles | bool | reviewer QC user interface | Yes | | --freq_diff | num | reviewer QC user interface | Yes | -| --genomic_control | bool | reviewer QC user interface | Yes | +| --adjustment | string | reviewer QC user interface | Yes | | --info_thresh | num | reviewer QC user interface | Yes | ## Example QC script call