From 4ecc67bc816e6a34b8f3b5a341a065500d04004d Mon Sep 17 00:00:00 2001 From: Arwa Ibrahim <97462656+ar-ibrahim@users.noreply.github.com> Date: Thu, 17 Oct 2024 13:58:03 +0100 Subject: [PATCH] Fixed GO obsoletion errors --- src/patterns/data/default/entity_attribute.tsv | 6 +++--- src/patterns/data/default/entity_attribute_part_of.tsv | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/src/patterns/data/default/entity_attribute.tsv b/src/patterns/data/default/entity_attribute.tsv index afb8e797..35d51aab 100644 --- a/src/patterns/data/default/entity_attribute.tsv +++ b/src/patterns/data/default/entity_attribute.tsv @@ -1820,7 +1820,7 @@ OBA:0002870 UBERON:0010747 body of ilium PATO:0000117 size OBA:0002871 UBERON:0014444 pubic ramus PATO:0000117 size OBA:0002872 UBERON:0002355 pelvic region of trunk PATO:0000117 size OBA:0002873 UBERON:0010890 pelvic complex muscle PATO:0000117 size -OBA:0002874 GO:0005746 mitochondrial respiratory chain PATO:0000161 rate +OBA:0002874 GO:0098803 respiratory chain complex PATO:0000161 rate OBA:0002875 UBERON:0002377 muscle of neck PATO:0000117 size OBA:0002876 UBERON:0001103 diaphragm PATO:0000070 amount OBA:0002877 UBERON:0001497 muscle of pelvic girdle PATO:0000117 size @@ -2218,7 +2218,7 @@ OBA:0003273 UBERON:0001042 chordate pharynx PATO:0000025 composition OBA:0003275 CL:0000233 platelet PATO:0002083 altered number of OBA:0003277 CL:0000233 platelet PATO:0000918 volume OBA:0003278 UBERON:0003635 pedal digit 5 PATO:0000122 length -OBA:0003279 GO:0005753 mitochondrial proton-transporting ATP synthase complex PATO:0000161 rate +OBA:0003279 GO:0045259 proton-transporting ATP synthase complex PATO:0000161 rate OBA:0003280 UBERON:0003631 pedal digit 1 PATO:0002181 displaced OBA:0003281 UBERON:0003868 proximal phalanx of pes PATO:0000122 length OBA:0003282 UBERON:0007709 superior cerebellar peduncle of pons PATO:0000122 length @@ -3923,7 +3923,7 @@ OBA:0006012 UBERON:0003924 ventral pancreatic bud PATO:0000117 size OBA:0006013 UBERON:0003923 dorsal pancreatic bud PATO:0000117 size OBA:0006014 GO:0050174 phenylalanine decarboxylase activity PATO:0000161 rate OBA:0006015 GO:0004104 cholinesterase activity PATO:0000161 rate -OBA:0006016 GO:0070547 L-tyrosine aminotransferase activity PATO:0000161 rate +OBA:0006016 GO:0004838 L-tyrosine-2-oxoglutarate transaminase activity PATO:0000161 rate OBA:0006017 GO:0004656 procollagen-proline 4-dioxygenase activity PATO:0000161 rate OBA:0006018 GO:0008119 thiopurine S-methyltransferase activity PATO:0000161 rate OBA:0006019 GO:0004511 tyrosine 3-monooxygenase activity PATO:0000161 rate diff --git a/src/patterns/data/default/entity_attribute_part_of.tsv b/src/patterns/data/default/entity_attribute_part_of.tsv index e5901ac7..5eba5c06 100644 --- a/src/patterns/data/default/entity_attribute_part_of.tsv +++ b/src/patterns/data/default/entity_attribute_part_of.tsv @@ -2461,7 +2461,7 @@ OBA:1000197 NBO:0000444 eye movement PATO:0000001 quality OBA:1000198 UBERON:0003723 vestibular nerve PATO:0000001 quality OBA:1000199 PR:000017364 von Willebrand factor PATO:0000001 quality OBA:1000200 UBERON:0001653 facial vein PATO:0000001 quality -OBA:1000201 GO:0005746 mitochondrial respiratory chain PATO:0000001 quality +OBA:1000201 GO:0098803 respiratory chain complex PATO:0000001 quality OBA:1000202 UBERON:0001867 cartilage of external ear PATO:0000001 quality OBA:1000203 UBERON:0001714 cranial ganglion PATO:0000001 quality OBA:1000204 UBERON:0004330 proximal phalanx of manual digit 4 PATO:0000001 quality @@ -2927,7 +2927,7 @@ OBA:1000676 GO:1903709 uterine gland development PATO:0000001 quality OBA:1000677 UBERON:0001839 bony labyrinth PATO:0000001 quality OBA:1000678 NBO:0000001 body part movement PATO:0000001 quality OBA:1000679 NBO:0001915 cocaine consumption PATO:0000001 quality -OBA:1000680 GO:0033878 hormone-sensitive lipase activity PATO:0000001 quality +OBA:1000680 GO:0120516 diacylglycerol lipase activity PATO:0000001 quality OBA:1000681 NBO:0000570 head bobbing PATO:0000001 quality OBA:1000682 UBERON:0005367 hippocampus granule cell layer PATO:0000001 quality OBA:1000683 GO:0045136 development of secondary sexual characteristics PATO:0000001 quality @@ -3088,7 +3088,7 @@ OBA:1000842 UBERON:0001849 membranous labyrinth PATO:0000001 quality OBA:1000843 GO:0001501 skeletal system development PATO:0000001 quality OBA:1000844 CL:0000653 glomerular visceral epithelial cell PATO:0000001 quality OBA:1000845 NBO:0000210 avoidance learning behavior PATO:0000001 quality -OBA:1000847 GO:0070547 L-tyrosine aminotransferase activity PATO:0000001 quality +OBA:1000847 GO:0004838 L-tyrosine-2-oxoglutarate transaminase activity PATO:0000001 quality OBA:1000848 GO:0072134 nephrogenic mesenchyme morphogenesis PATO:0000001 quality OBA:1000849 GO:0004465 lipoprotein lipase activity PATO:0000001 quality OBA:1000850 GO:0060659 nipple sheath formation PATO:0000001 quality