diff --git a/metapi/envs/dastools.yaml b/metapi/envs/dastools.yaml index 7e4a2f7..b810dab 100644 --- a/metapi/envs/dastools.yaml +++ b/metapi/envs/dastools.yaml @@ -3,7 +3,7 @@ channels: - bioconda - defaults dependencies: - - das_tool=1.1.4 - - diamond=2.0.14 + - python + - das_tool=1.1.6 - pigz - jq diff --git a/metapi/rules/binning_refine.smk b/metapi/rules/binning_refine.smk index 6341939..0f3a265 100644 --- a/metapi/rules/binning_refine.smk +++ b/metapi/rules/binning_refine.smk @@ -240,6 +240,7 @@ rule binning_dastools: mkdir -p {params.mags_dir} contigs2bin=$(python -c "import sys; print(','.join(sys.argv[1:]))" {input.contigs2bin}) + #contigs2bin=$(sed -E 's/^| /,/g' <<<"{input.contigs2bin}") FNAGZ={input.scaftigs} PEPGZ={input.pep}