Version 1.5.2

Minor fixes to benchmarking

• GCGI-1299: Redact gene descriptions in benchmark comparison
• GCGI-1301: Add report title and patient info to benchmark INI

Version 1.5.1

• GCGI-1296: Remove unwanted backslash and correctly insert configured sign-off date

Version 1.5.0

Report reformatting

• GCGI-1266: moved clinical footer into supplement plugin
• supplement.header plugin removed
• added Geneticist INI parameter to appendix
• GCGI-1294: Support new supplement.body params in mini-Djerba

Benchmark and test improvements

• GCGI-1253: Fix JSON equivalence check and add tests
• GCGI-1292: Add OncoKB caching to genomic_landscape plugin
• Update test_env.sh
• Add convenience scripts to run tests: run_all_tests.sh, run_quick_tests.sh

Update mode bugfix

• GCGI-1291: Do not overwrite previous JSON before generating updated report

Minor cleanup actions

• GCGI-1287: Remove obsolete data files
• GCGI-1267: Fix copyright date in README

Version 1.4.1

Fixed fusion bug

Version 1.4.0

What's Changed

• Mini-Djerba improvements for beta testing by @iainrb in #332
• fixed RUO PDF footer by @felixbeaudry in #334
• Dev gcgi 1261 less fragile html test by @iainrb in #336
• Dev actions not drugs by @felixbeaudry in #335
• Removed quality failure text from failed report plugin by @AqsaAlam in #337
• Gcgi 1282 fix pwgs config setup by @AqsaAlam in #338
• Fix gcgi 1278 benchmark tests and env update by @iainrb in #339
• Release 1.4.0 by @iainrb in #340

Full Changelog: v1.3.1...v1.4.0

Version 1.3.1

What's Changed

• Fixed 40X assay issue by @AqsaAlam in #325
• Rename mini-djerba link by @iainrb in #326
• Fix gcgi 1186 remove mavis by @iainrb in #327
• Fix gcgi 1258 import error by @iainrb in #328
• Release 1.3.1 by @iainrb in #329

Full Changelog: v1.3.0...v1.3.1

Version 1.3.0

• Mini-Djerba: Lightweight application to update patient info/summary in existing reports
• MDC file format: Mini-Djerba Config, with file extension .mdc
• New report_title plugin
• Added annotation of translocations eg t(11;14)
• Fixed issue with reading summary text path (GCGI-1256)

Version 1.2.1

• Minor bugfixes: Add patient_info plugin to setup.py, and reinstate "Clinical Report" heading in HTML

Version 1.2.0

• Add a patient_info plugin
• Add update mode to the main Djerba script, to update and render an existing JSON file
• New features are a proof-of-concept for enabling the geneticist to edit reports with a portable mini-Djerba
• Removed the update_oncokb_cache.py script; replaced by djerba.py update --summary=...
• Addition of pwgs_cardea_helper to pull sample info using a requisition ID

Version 1.1.3

Fixed units tests on supplements plugin