diff --git a/src/methods/geneformer/config.vsh.yaml b/src/methods/geneformer/config.vsh.yaml index 6be7998c..a98ab008 100644 --- a/src/methods/geneformer/config.vsh.yaml +++ b/src/methods/geneformer/config.vsh.yaml @@ -21,20 +21,24 @@ info: method_types: [embedding] variants: geneformer_12L_95M_i4096: - model: "gf-12L-95M-i4096" + model: gf-12L-95M-i4096 geneformer_6L_30M_i2048: - model: "gf-6L-30M-i2048" + model: gf-6L-30M-i2048 geneformer_12L_30M_i2048: - model: "gf-12L-30M-i2048" + model: gf-12L-30M-i2048 geneformer_20L_95M_i4096: - model: "gf-20L-95M-i4096" + model: gf-20L-95M-i4096 arguments: - - name: "--model" - type: "string" + - name: --model + type: string description: String representing the Geneformer model to use - choices: ["gf-6L-30M-i2048", "gf-12L-30M-i2048", "gf-12L-95M-i4096", "gf-20L-95M-i4096"] - default: "gf-12L-95M-i4096" + choices: + - gf-6L-30M-i2048 + - gf-12L-30M-i2048 + - gf-12L-95M-i4096 + - gf-20L-95M-i4096 + default: gf-12L-95M-i4096 resources: - type: python_script @@ -48,9 +52,9 @@ engines: setup: - type: python pip: - - pyarrow<15.0.0a0,>=14.0.1 - - huggingface_hub - - git+https://huggingface.co/ctheodoris/Geneformer.git + - pyarrow<15.0.0a0,>=14.0.1 + - huggingface_hub + - git+https://huggingface.co/ctheodoris/Geneformer.git runners: - type: executable