From fe44cb8b8042d8eb7cbe521a0b4737962151af00 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Fri, 19 Jul 2024 08:19:05 +0200
Subject: [PATCH] add config

---
 _viash.yaml | 32 ++++++++++++++++++++------------
 1 file changed, 20 insertions(+), 12 deletions(-)

diff --git a/_viash.yaml b/_viash.yaml
index 64e32395c..66f2ed79c 100644
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -1,15 +1,23 @@
-viash_version: 0.8.6
+name: task_grn_inference
+version: dev
 
-source: src
-target: target
+description: A dynamic benchmark for gene regulatory network (GRN) inference
+license: MIT
+
+links:
+  issue_tracker: https://github.com/openproblems-bio/task_grn_inference/issues
+  repository: https://github.com/openproblems-bio/task_grn_inference
+  docker_registry: ghcr.io
+
+# technical settings
+organization: openproblems-bio
+viash_version: 0.9.0-RC6
+
+info:
+  test_resources:
+    # - type: s3
+    #   path: s3://openproblems-data/resources_test/grn
+    #   dest: resources_test
 
 config_mods: |
-  .functionality.version := 'dev'
-  .functionality.arguments[.multiple == true].multiple_sep := ';'
-  .platforms[.type == 'docker'].target_registry := 'ghcr.io'
-  .platforms[.type == 'docker'].target_organization := 'openproblems-bio/task_grn_inference'
-  .platforms[.type == 'docker'].target_image_source := 'https://github.com/openproblems-bio/task_grn_inference'
-  .platforms[.type == "nextflow"].directives.tag := "$id"
-  .platforms[.type == "nextflow"].auto.simplifyOutput := false
-  .platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
-  .platforms[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"
\ No newline at end of file
+  .platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
\ No newline at end of file