From 9fbb182c5f6946e480ee8aa73523d3f171b704d3 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:00:39 +0200 Subject: [PATCH 1/6] fix resources path in github actions --- .github/workflows/test.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml index 67c6f17c..ff45af5c 100644 --- a/.github/workflows/test.yaml +++ b/.github/workflows/test.yaml @@ -88,7 +88,7 @@ jobs: uses: actions/cache@v4 timeout-minutes: 10 with: - path: resources + path: resources_test key: ${{ needs.list.outputs.cache_key }} - name: Run test From 1f947442319cabfa16363b2918c7c371d90bd470 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:01:01 +0200 Subject: [PATCH 2/6] add grn_model to test_resource path metrtics --- src/api/comp_metric.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/api/comp_metric.yaml b/src/api/comp_metric.yaml index cbc7f7d6..89742803 100644 --- a/src/api/comp_metric.yaml +++ b/src/api/comp_metric.yaml @@ -76,3 +76,5 @@ functionality: dest: resources_test/grn-benchmark - path: /resources_test/prior dest: resources_test/prior + - path: /resources_test/grn_models + dest: resources_test/grn_models From 04df41b4631248b03698adfe42fb2da689055870 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:02:31 +0200 Subject: [PATCH 3/6] fix unit test resources test path --- src/api/unit_test.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/api/unit_test.yaml b/src/api/unit_test.yaml index 3de58e7f..fde89592 100644 --- a/src/api/unit_test.yaml +++ b/src/api/unit_test.yaml @@ -2,5 +2,5 @@ functionality: test_resources: - type: python_script path: /src/common/component_tests/run_and_check_output.py - - path: /resources/grn-benchmark - dest: resources/grn-benchmark \ No newline at end of file + - path: /resources_test/grn-benchmark + dest: resources_test/grn-benchmark \ No newline at end of file From 1f22e8a6347d400e6217ce4a96acc3d5cb5c27e2 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:05:41 +0200 Subject: [PATCH 4/6] update sync resources_test script --- src/common/sync_test_resources/script.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/common/sync_test_resources/script.sh b/src/common/sync_test_resources/script.sh index 4afbf6cf..e3253686 100644 --- a/src/common/sync_test_resources/script.sh +++ b/src/common/sync_test_resources/script.sh @@ -1,7 +1,7 @@ #!/bin/bash ## VIASH START -par_input='s3://openproblems-bio/public/grn-benchmark/workflow-resources/' +par_input='s3://openproblems-data/resources_test/grn/' par_output='resources_test' ## VIASH END From 6847e40e38fba058bdaf68b52cba14f24501a8fd Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:07:04 +0200 Subject: [PATCH 5/6] force ci From 5596045170827a52a3209b84c892bcc985557ee2 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 14 Oct 2024 09:12:50 +0200 Subject: [PATCH 6/6] disable readme component --- src/common/create_task_readme/config.vsh.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/src/common/create_task_readme/config.vsh.yaml b/src/common/create_task_readme/config.vsh.yaml index d268974c..5986c27f 100644 --- a/src/common/create_task_readme/config.vsh.yaml +++ b/src/common/create_task_readme/config.vsh.yaml @@ -1,4 +1,5 @@ functionality: + status: disabled name: create_task_readme namespace: common description: |