diff --git a/CHANGELOG.md b/CHANGELOG.md
index b1a7a4f..467ca28 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,24 +1,15 @@
-# task_predict_modality x.y.z
+# task_predict_modality 0.1.0
-## BREAKING CHANGES
-
-
+Initial release after migrating the codebase.
## NEW FUNCTIONALITY
-* Added `control_methods/true_labels` component (PR #5).
+* Control methods: Solution, Mean per gene, Random Predictions, Zeros.
-* Added `methods/logistic_regression` component (PR #5).
+* Methods: Guanlab-dengkw, KNNR, Linear Model
-* Added `metrics/accuracy` component (PR #5).
+* Metrics: MAE, Mean pearson / spearman, RMSE
## MAJOR CHANGES
-* Updated `api` files (PR #5).
-
-## MINOR CHANGES
-
-* Updated `README.md` (PR #5).
-
-## BUGFIXES
-
+* Refactored the API schema.
diff --git a/README.md b/README.md
index 34ab1be..00f01fc 100644
--- a/README.md
+++ b/README.md
@@ -35,33 +35,32 @@ data shows that this is not trivial.
| Alejandro Granados | author |
| Alex Tong | author |
| Bastian Rieck | author |
+| Christopher Lance | author |
| Daniel Burkhardt | author |
| Kai Waldrant | contributor |
| Kaiwen Deng | contributor |
| Louise Deconinck | author |
| Robrecht Cannoodt | author, maintainer |
-| Xueer Chen | contributor |
-| Jiwei Liu | contributor |
## API
``` mermaid
-flowchart LR
- file_common_dataset_mod1("Raw dataset RNA")
- comp_process_datasets[/"Process Dataset"/]
- file_test_mod1("Test mod1")
- file_test_mod2("Test mod2")
- file_train_mod1("Train mod1")
- file_train_mod2("Train mod2")
- comp_control_method[/"Control method"/]
- comp_method_predict[/"Predict"/]
- comp_method_train[/"Train"/]
- comp_method[/"Method"/]
- comp_metric[/"Metric"/]
- file_prediction("Prediction")
- file_pretrained_model("Pretrained model")
- file_score("Score")
- file_common_dataset_mod2("Raw dataset mod2")
+flowchart TB
+ file_common_dataset_mod1("Raw dataset RNA")
+ comp_process_datasets[/"Process Dataset"/]
+ file_test_mod1("Test mod1")
+ file_test_mod2("Test mod2")
+ file_train_mod1("Train mod1")
+ file_train_mod2("Train mod2")
+ comp_control_method[/"Control method"/]
+ comp_method_predict[/"Predict"/]
+ comp_method_train[/"Train"/]
+ comp_method[/"Method"/]
+ comp_metric[/"Metric"/]
+ file_prediction("Prediction")
+ file_pretrained_model("Pretrained model")
+ file_score("Score")
+ file_common_dataset_mod2("Raw dataset mod2")
file_common_dataset_mod1---comp_process_datasets
comp_process_datasets-->file_test_mod1
comp_process_datasets-->file_test_mod2
@@ -69,16 +68,16 @@ flowchart LR
comp_process_datasets-->file_train_mod2
file_test_mod1---comp_control_method
file_test_mod1---comp_method_predict
- file_test_mod1---comp_method_train
+ file_test_mod1-.-comp_method_train
file_test_mod1---comp_method
file_test_mod2---comp_control_method
file_test_mod2---comp_metric
file_train_mod1---comp_control_method
- file_train_mod1---comp_method_predict
+ file_train_mod1-.-comp_method_predict
file_train_mod1---comp_method_train
file_train_mod1---comp_method
file_train_mod2---comp_control_method
- file_train_mod2---comp_method_predict
+ file_train_mod2-.-comp_method_predict
file_train_mod2---comp_method_train
file_train_mod2---comp_method
comp_control_method-->file_prediction
diff --git a/_viash.yaml b/_viash.yaml
index d32a429..6952bf5 100644
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -45,6 +45,11 @@ authors:
roles: [ author ]
info:
github: Pseudomanifold
+ - name: Christopher Lance
+ roles: [ author ]
+ info:
+ github: xlancelottx
+ orcid: "0000-0002-1275-9802"
- name: Daniel Burkhardt
roles: [ author ]
info:
diff --git a/scripts/create_readme.sh b/scripts/create_readme.sh
index 432aab4..d1ada96 100755
--- a/scripts/create_readme.sh
+++ b/scripts/create_readme.sh
@@ -2,4 +2,4 @@
set -e
-common/scripts/create_task_readme
+common/scripts/create_task_readme --input src