From db7aefaa0cd7909aa5d9b9dcf496f90fa90adcd6 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Tue, 19 Dec 2023 16:01:48 +0100
Subject: [PATCH] rename celltype to cell_type

---
 documentation/fundamentals/concepts.qmd | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/documentation/fundamentals/concepts.qmd b/documentation/fundamentals/concepts.qmd
index 99f20cba..f13dc925 100644
--- a/documentation/fundamentals/concepts.qmd
+++ b/documentation/fundamentals/concepts.qmd
@@ -21,8 +21,10 @@ Files with the `.h5ad` extension represent AnnData objects stored in an HDF5 fil
 
 In OpenProblems, most of the AnnData datasets will have a subset of the following slots:
 
+<!-- TODO: update. Also mention that the format is aligned to the cellxgene schema -->
+
     AnnData object
-      obs: 'celltype', 'batch', 'tissue', 'size_factors'
+      obs: 'cell_type', 'batch', 'tissue', 'size_factors'
       var: 'hvg', 'hvg_score'
       obsm: 'X_pca'
       obsp: 'knn_distances', 'knn_connectivities'