From f4ab75b8c216b1ed6dc07acf2b931b1ee0dcf794 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Fri, 22 Nov 2024 14:43:19 +0100 Subject: [PATCH 1/7] update team rendering --- team/_rerender_contributors.R | 37 ++++---- team/index.qmd | 88 ++++++++++++++++++- .../alejandro_granados/index.qmd | 0 .../{ => _old_data}/alex_tong/index.qmd | 0 .../{ => _old_data}/andrew_benz/index.qmd | 0 .../{ => _old_data}/artur_szaata/index.qmd | 0 .../{ => _old_data}/bastian_rieck/index.qmd | 0 .../{ => _old_data}/ben_demeo/index.qmd | 0 .../{ => _old_data}/daniel_strobl/index.qmd | 0 .../{ => _old_data}/dongyuan_song/index.qmd | 0 .../{ => _old_data}/giovanni_palla/index.qmd | 0 .../{ => _old_data}/guanao_yan/index.qmd | 0 .../{ => _old_data}/jalil_nourisa/index.qmd | 0 .../jingyi_jessica_li/index.qmd | 0 .../{ => _old_data}/jiwei_liu/index.qmd | 0 .../juan_a_cordero_varela/index.qmd | 0 .../{ => _old_data}/kai_waldrant/index.qmd | 0 .../{ => _old_data}/kaiwen_deng/index.qmd | 0 .../louise_deconinck/index.qmd | 0 .../{ => _old_data}/luca_pinello/index.qmd | 0 .../{ => _old_data}/luke_zappia/index.qmd | 0 .../{ => _old_data}/mengbo_wang/index.qmd | 0 .../michaela_mueller/index.qmd | 0 .../{ => _old_data}/michal_klein/index.qmd | 0 .../{ => _old_data}/nikolay_markov/index.qmd | 0 .../{ => _old_data}/rico_meinl/index.qmd | 0 .../sai_nirmayi_yasa/index.qmd | 0 .../{ => _old_data}/tianyu_liu/index.qmd | 0 .../{ => _old_data}/tin_m_tunjic/index.qmd | 0 .../{ => _old_data}/wesley_lewis/index.qmd | 0 .../{ => _old_data}/xueer_chen/index.qmd | 0 .../{ => _old_data}/zain_m_patel/index.qmd | 0 .../{ => _old_data}/zhijian_li/index.qmd | 0 .../batch_integration/daniel_strobl/index.qmd | 15 ++++ .../batch_integration/kai_waldrant/index.qmd | 15 ++++ .../batch_integration/malte_luecken/index.qmd | 15 ++++ .../michaela_mueller/index.qmd | 15 ++++ .../batch_integration/nartin_kim/index.qmd | 15 ++++ .../daniel_dimitrov/index.qmd | 12 +++ .../vishnuvasan_raghuraman/index.qmd | 12 +++ .../denoising/kai_waldrant/index.qmd | 15 ++++ .../denoising/wesley_lewis/index.qmd | 12 +++ .../ben_demeo/index.qmd | 12 +++ .../juan_a_cordero_varela/index.qmd | 15 ++++ .../kai_waldrant/index.qmd | 15 ++++ .../luke_zappia/index.qmd | 15 ++++ .../michal_klein/index.qmd | 12 +++ .../sai_nirmayi_yasa/index.qmd | 15 ++++ .../label_projection/nikolay_markov/index.qmd | 12 +++ .../andrew_benz/index.qmd | 15 ++++ .../artur_szaata/index.qmd | 15 ++++ .../jalil_nourisa/index.qmd | 15 ++++ .../mengbo_wang/index.qmd | 15 ++++ .../rico_meinl/index.qmd | 15 ++++ .../tianyu_liu/index.qmd | 15 ++++ .../tin_m_tunjic/index.qmd | 15 ++++ .../alejandro_granados/index.qmd | 12 +++ .../predict_modality/alex_tong/index.qmd | 12 +++ .../predict_modality/bastian_rieck/index.qmd | 12 +++ .../predict_modality/kai_waldrant/index.qmd | 15 ++++ .../predict_modality/kaiwen_deng/index.qmd | 15 ++++ .../louise_deconinck/index.qmd | 12 +++ .../giovanni_palla/index.qmd | 12 +++ .../sai_nirmayi_yasa/index.qmd | 15 ++++ .../dongyuan_song/index.qmd | 12 +++ .../guanao_yan/index.qmd | 9 ++ .../jingyi_jessica_li/index.qmd | 12 +++ .../luca_pinello/index.qmd | 12 +++ .../sai_nirmayi_yasa/index.qmd | 15 ++++ .../zain_m_patel/index.qmd | 12 +++ .../zhijian_li/index.qmd | 15 ++++ 71 files changed, 626 insertions(+), 18 deletions(-) rename team/task_contributors/{ => _old_data}/alejandro_granados/index.qmd (100%) rename team/task_contributors/{ => _old_data}/alex_tong/index.qmd (100%) rename team/task_contributors/{ => _old_data}/andrew_benz/index.qmd (100%) rename team/task_contributors/{ => _old_data}/artur_szaata/index.qmd (100%) rename team/task_contributors/{ => _old_data}/bastian_rieck/index.qmd (100%) rename team/task_contributors/{ => _old_data}/ben_demeo/index.qmd (100%) rename team/task_contributors/{ => _old_data}/daniel_strobl/index.qmd (100%) rename team/task_contributors/{ => _old_data}/dongyuan_song/index.qmd (100%) rename team/task_contributors/{ => _old_data}/giovanni_palla/index.qmd (100%) rename team/task_contributors/{ => _old_data}/guanao_yan/index.qmd (100%) rename team/task_contributors/{ => _old_data}/jalil_nourisa/index.qmd (100%) rename team/task_contributors/{ => _old_data}/jingyi_jessica_li/index.qmd (100%) rename team/task_contributors/{ => _old_data}/jiwei_liu/index.qmd (100%) rename team/task_contributors/{ => _old_data}/juan_a_cordero_varela/index.qmd (100%) rename team/task_contributors/{ => _old_data}/kai_waldrant/index.qmd (100%) rename team/task_contributors/{ => _old_data}/kaiwen_deng/index.qmd (100%) rename team/task_contributors/{ => _old_data}/louise_deconinck/index.qmd (100%) rename team/task_contributors/{ => _old_data}/luca_pinello/index.qmd (100%) rename team/task_contributors/{ => _old_data}/luke_zappia/index.qmd (100%) rename team/task_contributors/{ => _old_data}/mengbo_wang/index.qmd (100%) rename team/task_contributors/{ => _old_data}/michaela_mueller/index.qmd (100%) rename team/task_contributors/{ => _old_data}/michal_klein/index.qmd (100%) rename team/task_contributors/{ => _old_data}/nikolay_markov/index.qmd (100%) rename team/task_contributors/{ => _old_data}/rico_meinl/index.qmd (100%) rename team/task_contributors/{ => _old_data}/sai_nirmayi_yasa/index.qmd (100%) rename team/task_contributors/{ => _old_data}/tianyu_liu/index.qmd (100%) rename team/task_contributors/{ => _old_data}/tin_m_tunjic/index.qmd (100%) rename team/task_contributors/{ => _old_data}/wesley_lewis/index.qmd (100%) rename team/task_contributors/{ => _old_data}/xueer_chen/index.qmd (100%) rename team/task_contributors/{ => _old_data}/zain_m_patel/index.qmd (100%) rename team/task_contributors/{ => _old_data}/zhijian_li/index.qmd (100%) create mode 100644 team/task_contributors/batch_integration/daniel_strobl/index.qmd create mode 100644 team/task_contributors/batch_integration/kai_waldrant/index.qmd create mode 100644 team/task_contributors/batch_integration/malte_luecken/index.qmd create mode 100644 team/task_contributors/batch_integration/michaela_mueller/index.qmd create mode 100644 team/task_contributors/batch_integration/nartin_kim/index.qmd create mode 100644 team/task_contributors/cell_cell_communication/daniel_dimitrov/index.qmd create mode 100644 team/task_contributors/cell_cell_communication/vishnuvasan_raghuraman/index.qmd create mode 100644 team/task_contributors/denoising/kai_waldrant/index.qmd create mode 100644 team/task_contributors/denoising/wesley_lewis/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/ben_demeo/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/michal_klein/index.qmd create mode 100644 team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd create mode 100644 team/task_contributors/label_projection/nikolay_markov/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/andrew_benz/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/artur_szaata/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/rico_meinl/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd create mode 100644 team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd create mode 100644 team/task_contributors/predict_modality/alejandro_granados/index.qmd create mode 100644 team/task_contributors/predict_modality/alex_tong/index.qmd create mode 100644 team/task_contributors/predict_modality/bastian_rieck/index.qmd create mode 100644 team/task_contributors/predict_modality/kai_waldrant/index.qmd create mode 100644 team/task_contributors/predict_modality/kaiwen_deng/index.qmd create mode 100644 team/task_contributors/predict_modality/louise_deconinck/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/giovanni_palla/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/dongyuan_song/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/jingyi_jessica_li/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/luca_pinello/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/zain_m_patel/index.qmd create mode 100644 team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd diff --git a/team/_rerender_contributors.R b/team/_rerender_contributors.R index 44e08234..46e667fe 100644 --- a/team/_rerender_contributors.R +++ b/team/_rerender_contributors.R @@ -1,10 +1,15 @@ library(rlang) repositories <- c( - "openproblems-bio/openproblems", - # "openproblems-bio/task_dimensionality_reduction", - # "openproblems-bio/task_spatially_variable_genes", - "openproblems-bio/task_perturbation_prediction" + "openproblems-bio/task_denoising", + "openproblems-bio/task_dimensionality_reduction", + "openproblems-bio/task_spatially_variable_genes", + "openproblems-bio/task_perturbation_prediction", + "openproblems-bio/task_batch_integration", + "openproblems-bio/task_cell_cell_communication", + "openproblems-bio/task_label_projection", + "openproblems-bio/task_spatial_decomposition", + "openproblems-bio/task_predict_modality" ) cache_repository <- function(repo) { @@ -28,12 +33,12 @@ cache_repository <- function(repo) { find_task_info <- function(repo_dir) { # find all authors in the repository - task_info <- list.files(repo_dir, pattern = "task_info.yaml", full.names = TRUE, recursive = TRUE) - task_info <- task_info[grep("/api/task_info.yaml", task_info)] + # task_info <- list.files(repo_dir, pattern = "task_info.yaml", full.names = TRUE, recursive = TRUE) + # task_info <- task_info[grep("/api/task_info.yaml", task_info)] - if (length(task_info) > 0) { - return(task_info) - } + # if (length(task_info) > 0) { + # return(task_info) + # } viash_yaml <- list.files(repo_dir, pattern = "_viash.yaml", full.names = TRUE, recursive = TRUE) @@ -98,8 +103,8 @@ render_author <- function(author) { out <- list( title = author$name, image = out_image, - # role = paste(stringr::str_to_title(author$roles), collapse = ", "), - role = "Task Contributor", + role = paste(stringr::str_to_title(author$roles), collapse = ", "), + # role = "Task Contributor", about = list( template = "jolla", links = out_links @@ -162,7 +167,7 @@ for (task_name in names(tasks)) { author <- task$authors[[author_id]] txt <- render_author(author) - file_path <- file.path("team", "task_contributors", paste0(author_id, "/index.qmd")) + file_path <- file.path("team", "task_contributors", task_name, paste0(author_id, "/index.qmd")) if (!dir.exists(dirname(file_path))) { dir.create(dirname(file_path), recursive = TRUE) @@ -172,8 +177,8 @@ for (task_name in names(tasks)) { } } -teams <- list.dirs("team", full.names = FALSE, recursive = FALSE) -teams <- teams[!teams %in% c("core_members", "scientific_advisors")] +teams <- list.dirs("team/task_contributors", full.names = FALSE, recursive = FALSE) +teams <- teams[!teams %in% c("_old_data")] teams_headers <- paste0( " - id: ", teams, " @@ -183,7 +188,7 @@ teams_headers <- paste0( sort: ''" ) teams_index <- paste0( -"## ", stringr::str_to_title(gsub("_", " ", teams)), " +"### ", stringr::str_to_title(gsub("_", " ", teams)), " :::{#", teams, "} ::: @@ -220,6 +225,8 @@ css: team.css :::{#scientific_advisors} ::: +## Task Contributors + ", paste(teams_index, collapse = "\n"), " ") diff --git a/team/index.qmd b/team/index.qmd index 54a25f29..1db646df 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -14,8 +14,48 @@ listing: type: grid template: members.ejs sort: '' - - id: task_contributors - contents: task_contributors/*/index.qmd + - id: batch_integration + contents: batch_integration/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: cell_cell_communication + contents: cell_cell_communication/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: denoising + contents: denoising/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: dimensionality_reduction + contents: dimensionality_reduction/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: label_projection + contents: label_projection/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: perturbation_prediction + contents: perturbation_prediction/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: predict_modality + contents: predict_modality/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: spatial_decomposition + contents: spatial_decomposition/*/index.qmd + type: grid + template: members.ejs + sort: '' + - id: spatially_variable_genes + contents: spatially_variable_genes/*/index.qmd type: grid template: members.ejs sort: '' @@ -34,7 +74,49 @@ css: team.css ## Task Contributors -:::{#task_contributors} +### Batch Integration + +:::{#batch_integration} +::: + +### Cell Cell Communication + +:::{#cell_cell_communication} +::: + +### Denoising + +:::{#denoising} +::: + +### Dimensionality Reduction + +:::{#dimensionality_reduction} +::: + +### Label Projection + +:::{#label_projection} +::: + +### Perturbation Prediction + +:::{#perturbation_prediction} +::: + +### Predict Modality + +:::{#predict_modality} +::: + +### Spatial Decomposition + +:::{#spatial_decomposition} +::: + +### Spatially Variable Genes + +:::{#spatially_variable_genes} ::: diff --git a/team/task_contributors/alejandro_granados/index.qmd b/team/task_contributors/_old_data/alejandro_granados/index.qmd similarity index 100% rename from team/task_contributors/alejandro_granados/index.qmd rename to team/task_contributors/_old_data/alejandro_granados/index.qmd diff --git a/team/task_contributors/alex_tong/index.qmd b/team/task_contributors/_old_data/alex_tong/index.qmd similarity index 100% rename from team/task_contributors/alex_tong/index.qmd rename to team/task_contributors/_old_data/alex_tong/index.qmd diff --git a/team/task_contributors/andrew_benz/index.qmd b/team/task_contributors/_old_data/andrew_benz/index.qmd similarity index 100% rename from team/task_contributors/andrew_benz/index.qmd rename to team/task_contributors/_old_data/andrew_benz/index.qmd diff --git a/team/task_contributors/artur_szaata/index.qmd b/team/task_contributors/_old_data/artur_szaata/index.qmd similarity index 100% rename from team/task_contributors/artur_szaata/index.qmd rename to team/task_contributors/_old_data/artur_szaata/index.qmd diff --git a/team/task_contributors/bastian_rieck/index.qmd b/team/task_contributors/_old_data/bastian_rieck/index.qmd similarity index 100% rename from team/task_contributors/bastian_rieck/index.qmd rename to team/task_contributors/_old_data/bastian_rieck/index.qmd diff --git a/team/task_contributors/ben_demeo/index.qmd b/team/task_contributors/_old_data/ben_demeo/index.qmd similarity index 100% rename from team/task_contributors/ben_demeo/index.qmd rename to team/task_contributors/_old_data/ben_demeo/index.qmd diff --git a/team/task_contributors/daniel_strobl/index.qmd b/team/task_contributors/_old_data/daniel_strobl/index.qmd similarity index 100% rename from team/task_contributors/daniel_strobl/index.qmd rename to team/task_contributors/_old_data/daniel_strobl/index.qmd diff --git a/team/task_contributors/dongyuan_song/index.qmd b/team/task_contributors/_old_data/dongyuan_song/index.qmd similarity index 100% rename from team/task_contributors/dongyuan_song/index.qmd rename to team/task_contributors/_old_data/dongyuan_song/index.qmd diff --git a/team/task_contributors/giovanni_palla/index.qmd b/team/task_contributors/_old_data/giovanni_palla/index.qmd similarity index 100% rename from team/task_contributors/giovanni_palla/index.qmd rename to team/task_contributors/_old_data/giovanni_palla/index.qmd diff --git a/team/task_contributors/guanao_yan/index.qmd b/team/task_contributors/_old_data/guanao_yan/index.qmd similarity index 100% rename from team/task_contributors/guanao_yan/index.qmd rename to team/task_contributors/_old_data/guanao_yan/index.qmd diff --git a/team/task_contributors/jalil_nourisa/index.qmd b/team/task_contributors/_old_data/jalil_nourisa/index.qmd similarity index 100% rename from team/task_contributors/jalil_nourisa/index.qmd rename to team/task_contributors/_old_data/jalil_nourisa/index.qmd diff --git a/team/task_contributors/jingyi_jessica_li/index.qmd b/team/task_contributors/_old_data/jingyi_jessica_li/index.qmd similarity index 100% rename from team/task_contributors/jingyi_jessica_li/index.qmd rename to team/task_contributors/_old_data/jingyi_jessica_li/index.qmd diff --git a/team/task_contributors/jiwei_liu/index.qmd b/team/task_contributors/_old_data/jiwei_liu/index.qmd similarity index 100% rename from team/task_contributors/jiwei_liu/index.qmd rename to team/task_contributors/_old_data/jiwei_liu/index.qmd diff --git a/team/task_contributors/juan_a_cordero_varela/index.qmd b/team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd similarity index 100% rename from team/task_contributors/juan_a_cordero_varela/index.qmd rename to team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd diff --git a/team/task_contributors/kai_waldrant/index.qmd b/team/task_contributors/_old_data/kai_waldrant/index.qmd similarity index 100% rename from team/task_contributors/kai_waldrant/index.qmd rename to team/task_contributors/_old_data/kai_waldrant/index.qmd diff --git a/team/task_contributors/kaiwen_deng/index.qmd b/team/task_contributors/_old_data/kaiwen_deng/index.qmd similarity index 100% rename from team/task_contributors/kaiwen_deng/index.qmd rename to team/task_contributors/_old_data/kaiwen_deng/index.qmd diff --git a/team/task_contributors/louise_deconinck/index.qmd b/team/task_contributors/_old_data/louise_deconinck/index.qmd similarity index 100% rename from team/task_contributors/louise_deconinck/index.qmd rename to team/task_contributors/_old_data/louise_deconinck/index.qmd diff --git a/team/task_contributors/luca_pinello/index.qmd b/team/task_contributors/_old_data/luca_pinello/index.qmd similarity index 100% rename from team/task_contributors/luca_pinello/index.qmd rename to team/task_contributors/_old_data/luca_pinello/index.qmd diff --git a/team/task_contributors/luke_zappia/index.qmd b/team/task_contributors/_old_data/luke_zappia/index.qmd similarity index 100% rename from team/task_contributors/luke_zappia/index.qmd rename to team/task_contributors/_old_data/luke_zappia/index.qmd diff --git a/team/task_contributors/mengbo_wang/index.qmd b/team/task_contributors/_old_data/mengbo_wang/index.qmd similarity index 100% rename from team/task_contributors/mengbo_wang/index.qmd rename to team/task_contributors/_old_data/mengbo_wang/index.qmd diff --git a/team/task_contributors/michaela_mueller/index.qmd b/team/task_contributors/_old_data/michaela_mueller/index.qmd similarity index 100% rename from team/task_contributors/michaela_mueller/index.qmd rename to team/task_contributors/_old_data/michaela_mueller/index.qmd diff --git a/team/task_contributors/michal_klein/index.qmd b/team/task_contributors/_old_data/michal_klein/index.qmd similarity index 100% rename from team/task_contributors/michal_klein/index.qmd rename to team/task_contributors/_old_data/michal_klein/index.qmd diff --git a/team/task_contributors/nikolay_markov/index.qmd b/team/task_contributors/_old_data/nikolay_markov/index.qmd similarity index 100% rename from team/task_contributors/nikolay_markov/index.qmd rename to team/task_contributors/_old_data/nikolay_markov/index.qmd diff --git a/team/task_contributors/rico_meinl/index.qmd b/team/task_contributors/_old_data/rico_meinl/index.qmd similarity index 100% rename from team/task_contributors/rico_meinl/index.qmd rename to team/task_contributors/_old_data/rico_meinl/index.qmd diff --git a/team/task_contributors/sai_nirmayi_yasa/index.qmd b/team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd similarity index 100% rename from team/task_contributors/sai_nirmayi_yasa/index.qmd rename to team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd diff --git a/team/task_contributors/tianyu_liu/index.qmd b/team/task_contributors/_old_data/tianyu_liu/index.qmd similarity index 100% rename from team/task_contributors/tianyu_liu/index.qmd rename to team/task_contributors/_old_data/tianyu_liu/index.qmd diff --git a/team/task_contributors/tin_m_tunjic/index.qmd b/team/task_contributors/_old_data/tin_m_tunjic/index.qmd similarity index 100% rename from team/task_contributors/tin_m_tunjic/index.qmd rename to team/task_contributors/_old_data/tin_m_tunjic/index.qmd diff --git a/team/task_contributors/wesley_lewis/index.qmd b/team/task_contributors/_old_data/wesley_lewis/index.qmd similarity index 100% rename from team/task_contributors/wesley_lewis/index.qmd rename to team/task_contributors/_old_data/wesley_lewis/index.qmd diff --git a/team/task_contributors/xueer_chen/index.qmd b/team/task_contributors/_old_data/xueer_chen/index.qmd similarity index 100% rename from team/task_contributors/xueer_chen/index.qmd rename to team/task_contributors/_old_data/xueer_chen/index.qmd diff --git a/team/task_contributors/zain_m_patel/index.qmd b/team/task_contributors/_old_data/zain_m_patel/index.qmd similarity index 100% rename from team/task_contributors/zain_m_patel/index.qmd rename to team/task_contributors/_old_data/zain_m_patel/index.qmd diff --git a/team/task_contributors/zhijian_li/index.qmd b/team/task_contributors/_old_data/zhijian_li/index.qmd similarity index 100% rename from team/task_contributors/zhijian_li/index.qmd rename to team/task_contributors/_old_data/zhijian_li/index.qmd diff --git a/team/task_contributors/batch_integration/daniel_strobl/index.qmd b/team/task_contributors/batch_integration/daniel_strobl/index.qmd new file mode 100644 index 00000000..10b857b1 --- /dev/null +++ b/team/task_contributors/batch_integration/daniel_strobl/index.qmd @@ -0,0 +1,15 @@ +--- +title: Daniel Strobl +image: https://www.github.com/danielStrobl.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/danielStrobl + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-5516-7057 +--- + diff --git a/team/task_contributors/batch_integration/kai_waldrant/index.qmd b/team/task_contributors/batch_integration/kai_waldrant/index.qmd new file mode 100644 index 00000000..a451c617 --- /dev/null +++ b/team/task_contributors/batch_integration/kai_waldrant/index.qmd @@ -0,0 +1,15 @@ +--- +title: Kai Waldrant +image: https://www.github.com/KaiWaldrant.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/KaiWaldrant + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-8555-1361 +--- + diff --git a/team/task_contributors/batch_integration/malte_luecken/index.qmd b/team/task_contributors/batch_integration/malte_luecken/index.qmd new file mode 100644 index 00000000..5f38b835 --- /dev/null +++ b/team/task_contributors/batch_integration/malte_luecken/index.qmd @@ -0,0 +1,15 @@ +--- +title: Malte Luecken +image: https://www.github.com/LuckyMD.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/LuckyMD + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0001-7464-7921 +--- + diff --git a/team/task_contributors/batch_integration/michaela_mueller/index.qmd b/team/task_contributors/batch_integration/michaela_mueller/index.qmd new file mode 100644 index 00000000..0a26edb7 --- /dev/null +++ b/team/task_contributors/batch_integration/michaela_mueller/index.qmd @@ -0,0 +1,15 @@ +--- +title: Michaela Mueller +image: https://www.github.com/mumichae.png +role: Maintainer, Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/mumichae + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-1401-1785 +--- + diff --git a/team/task_contributors/batch_integration/nartin_kim/index.qmd b/team/task_contributors/batch_integration/nartin_kim/index.qmd new file mode 100644 index 00000000..b094225e --- /dev/null +++ b/team/task_contributors/batch_integration/nartin_kim/index.qmd @@ -0,0 +1,15 @@ +--- +title: Nartin Kim +image: https://www.github.com/martinkim0.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/martinkim0 + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-8555-1361 +--- + diff --git a/team/task_contributors/cell_cell_communication/daniel_dimitrov/index.qmd b/team/task_contributors/cell_cell_communication/daniel_dimitrov/index.qmd new file mode 100644 index 00000000..d3f4e7e0 --- /dev/null +++ b/team/task_contributors/cell_cell_communication/daniel_dimitrov/index.qmd @@ -0,0 +1,12 @@ +--- +title: Daniel Dimitrov +image: https://www.github.com/dbdimitrov.png +role: Maintainer, Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/dbdimitrov +--- + diff --git a/team/task_contributors/cell_cell_communication/vishnuvasan_raghuraman/index.qmd b/team/task_contributors/cell_cell_communication/vishnuvasan_raghuraman/index.qmd new file mode 100644 index 00000000..8d48ce0c --- /dev/null +++ b/team/task_contributors/cell_cell_communication/vishnuvasan_raghuraman/index.qmd @@ -0,0 +1,12 @@ +--- +title: Vishnuvasan Raghuraman +image: https://www.github.com/vishnu-vasan.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/vishnu-vasan +--- + diff --git a/team/task_contributors/denoising/kai_waldrant/index.qmd b/team/task_contributors/denoising/kai_waldrant/index.qmd new file mode 100644 index 00000000..a451c617 --- /dev/null +++ b/team/task_contributors/denoising/kai_waldrant/index.qmd @@ -0,0 +1,15 @@ +--- +title: Kai Waldrant +image: https://www.github.com/KaiWaldrant.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/KaiWaldrant + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-8555-1361 +--- + diff --git a/team/task_contributors/denoising/wesley_lewis/index.qmd b/team/task_contributors/denoising/wesley_lewis/index.qmd new file mode 100644 index 00000000..b3e77f66 --- /dev/null +++ b/team/task_contributors/denoising/wesley_lewis/index.qmd @@ -0,0 +1,12 @@ +--- +title: Wesley Lewis +image: https://www.github.com/wes-lewis.png +role: Author, Maintainer +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/wes-lewis +--- + diff --git a/team/task_contributors/dimensionality_reduction/ben_demeo/index.qmd b/team/task_contributors/dimensionality_reduction/ben_demeo/index.qmd new file mode 100644 index 00000000..94c3ba57 --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/ben_demeo/index.qmd @@ -0,0 +1,12 @@ +--- +title: Ben DeMeo +image: https://www.github.com/bendemeo.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/bendemeo +--- + diff --git a/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd b/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd new file mode 100644 index 00000000..38239559 --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd @@ -0,0 +1,15 @@ +--- +title: Juan A. Cordero Varela +image: https://www.github.com/jacorvar.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/jacorvar + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-7373-5433 +--- + diff --git a/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd b/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd new file mode 100644 index 00000000..a451c617 --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd @@ -0,0 +1,15 @@ +--- +title: Kai Waldrant +image: https://www.github.com/KaiWaldrant.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/KaiWaldrant + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-8555-1361 +--- + diff --git a/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd b/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd new file mode 100644 index 00000000..33aa2b77 --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd @@ -0,0 +1,15 @@ +--- +title: Luke Zappia +image: https://www.github.com/lazappi.png +role: Maintainer, Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/lazappi + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0001-7744-8565 +--- + diff --git a/team/task_contributors/dimensionality_reduction/michal_klein/index.qmd b/team/task_contributors/dimensionality_reduction/michal_klein/index.qmd new file mode 100644 index 00000000..8f80299d --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/michal_klein/index.qmd @@ -0,0 +1,12 @@ +--- +title: Michal Klein +image: https://www.github.com/michalk8.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/michalk8 +--- + diff --git a/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd b/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd new file mode 100644 index 00000000..c215576a --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd @@ -0,0 +1,15 @@ +--- +title: Sai Nirmayi Yasa +image: https://www.github.com/sainirmayi.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/sainirmayi + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-6319-9803 +--- + diff --git a/team/task_contributors/label_projection/nikolay_markov/index.qmd b/team/task_contributors/label_projection/nikolay_markov/index.qmd new file mode 100644 index 00000000..b3d67620 --- /dev/null +++ b/team/task_contributors/label_projection/nikolay_markov/index.qmd @@ -0,0 +1,12 @@ +--- +title: Nikolay Markov +image: https://www.github.com/mxposed.png +role: Author, Maintainer +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/mxposed +--- + diff --git a/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd b/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd new file mode 100644 index 00000000..11d9690f --- /dev/null +++ b/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd @@ -0,0 +1,15 @@ +--- +title: Andrew Benz +image: https://www.github.com/andrew-benz.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/andrew-benz + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0002-8118-1861 +--- + diff --git a/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd b/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd new file mode 100644 index 00000000..5d3bd9c5 --- /dev/null +++ b/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd @@ -0,0 +1,15 @@ +--- +title: Artur Szałata +image: https://www.github.com/szalata.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/szalata + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/000-0001-8413-234X +--- + diff --git a/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd b/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd new file mode 100644 index 00000000..127a6417 --- /dev/null +++ b/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd @@ -0,0 +1,15 @@ +--- +title: Jalil Nourisa +image: https://www.github.com/janursa.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/janursa + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-7539-4396 +--- + diff --git a/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd b/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd new file mode 100644 index 00000000..ba47b45d --- /dev/null +++ b/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd @@ -0,0 +1,15 @@ +--- +title: Mengbo Wang +image: https://www.github.com/wangmengbo.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/wangmengbo + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-0266-9993 +--- + diff --git a/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd b/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd new file mode 100644 index 00000000..ffffe6d9 --- /dev/null +++ b/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd @@ -0,0 +1,15 @@ +--- +title: Rico Meinl +image: https://www.github.com/ricomnl.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/ricomnl + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0003-4356-6058 +--- + diff --git a/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd b/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd new file mode 100644 index 00000000..49af5220 --- /dev/null +++ b/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd @@ -0,0 +1,15 @@ +--- +title: Tianyu Liu +image: https://www.github.com/HelloWorldLTY.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/HelloWorldLTY + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-9412-6573 +--- + diff --git a/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd b/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd new file mode 100644 index 00000000..5cf3ab4d --- /dev/null +++ b/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd @@ -0,0 +1,15 @@ +--- +title: Tin M. Tunjic +image: https://www.github.com/ttunja.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/ttunja + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0001-8842-6548 +--- + diff --git a/team/task_contributors/predict_modality/alejandro_granados/index.qmd b/team/task_contributors/predict_modality/alejandro_granados/index.qmd new file mode 100644 index 00000000..9dfd4f4e --- /dev/null +++ b/team/task_contributors/predict_modality/alejandro_granados/index.qmd @@ -0,0 +1,12 @@ +--- +title: Alejandro Granados +image: https://www.github.com/agranado.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/agranado +--- + diff --git a/team/task_contributors/predict_modality/alex_tong/index.qmd b/team/task_contributors/predict_modality/alex_tong/index.qmd new file mode 100644 index 00000000..9ff5cc19 --- /dev/null +++ b/team/task_contributors/predict_modality/alex_tong/index.qmd @@ -0,0 +1,12 @@ +--- +title: Alex Tong +image: https://www.github.com/atong01.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/atong01 +--- + diff --git a/team/task_contributors/predict_modality/bastian_rieck/index.qmd b/team/task_contributors/predict_modality/bastian_rieck/index.qmd new file mode 100644 index 00000000..7d2d47ba --- /dev/null +++ b/team/task_contributors/predict_modality/bastian_rieck/index.qmd @@ -0,0 +1,12 @@ +--- +title: Bastian Rieck +image: https://www.github.com/Pseudomanifold.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/Pseudomanifold +--- + diff --git a/team/task_contributors/predict_modality/kai_waldrant/index.qmd b/team/task_contributors/predict_modality/kai_waldrant/index.qmd new file mode 100644 index 00000000..a451c617 --- /dev/null +++ b/team/task_contributors/predict_modality/kai_waldrant/index.qmd @@ -0,0 +1,15 @@ +--- +title: Kai Waldrant +image: https://www.github.com/KaiWaldrant.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/KaiWaldrant + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-8555-1361 +--- + diff --git a/team/task_contributors/predict_modality/kaiwen_deng/index.qmd b/team/task_contributors/predict_modality/kaiwen_deng/index.qmd new file mode 100644 index 00000000..f2272c87 --- /dev/null +++ b/team/task_contributors/predict_modality/kaiwen_deng/index.qmd @@ -0,0 +1,15 @@ +--- +title: Kaiwen Deng +image: https://www.github.com/nonztalk.png +role: Contributor +about: + template: jolla + links: + - icon: bi-envelope + text: E-mail + href: mailto:dengkw@umich.edu + - icon: bi-github + text: GitHub + href: https://github.com/nonztalk +--- + diff --git a/team/task_contributors/predict_modality/louise_deconinck/index.qmd b/team/task_contributors/predict_modality/louise_deconinck/index.qmd new file mode 100644 index 00000000..aad556a3 --- /dev/null +++ b/team/task_contributors/predict_modality/louise_deconinck/index.qmd @@ -0,0 +1,12 @@ +--- +title: Louise Deconinck +image: https://www.github.com/LouiseDck.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/LouiseDck +--- + diff --git a/team/task_contributors/spatial_decomposition/giovanni_palla/index.qmd b/team/task_contributors/spatial_decomposition/giovanni_palla/index.qmd new file mode 100644 index 00000000..6e30cc23 --- /dev/null +++ b/team/task_contributors/spatial_decomposition/giovanni_palla/index.qmd @@ -0,0 +1,12 @@ +--- +title: Giovanni Palla +image: https://www.github.com/giovp.png +role: Author, Maintainer +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/giovp +--- + diff --git a/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd b/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd new file mode 100644 index 00000000..c215576a --- /dev/null +++ b/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd @@ -0,0 +1,15 @@ +--- +title: Sai Nirmayi Yasa +image: https://www.github.com/sainirmayi.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/sainirmayi + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-6319-9803 +--- + diff --git a/team/task_contributors/spatially_variable_genes/dongyuan_song/index.qmd b/team/task_contributors/spatially_variable_genes/dongyuan_song/index.qmd new file mode 100644 index 00000000..64f7a4f6 --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/dongyuan_song/index.qmd @@ -0,0 +1,12 @@ +--- +title: Dongyuan Song +image: https://www.github.com/SONGDONGYUAN1994.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/SONGDONGYUAN1994 +--- + diff --git a/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd b/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd new file mode 100644 index 00000000..46a6bee5 --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd @@ -0,0 +1,9 @@ +--- +title: Guanao Yan +image: /images/avatar.svg +role: Author +about: + template: jolla + links: [] +--- + diff --git a/team/task_contributors/spatially_variable_genes/jingyi_jessica_li/index.qmd b/team/task_contributors/spatially_variable_genes/jingyi_jessica_li/index.qmd new file mode 100644 index 00000000..b73ffe97 --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/jingyi_jessica_li/index.qmd @@ -0,0 +1,12 @@ +--- +title: Jingyi Jessica Li +image: https://www.github.com/JSB-UCLA.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/JSB-UCLA +--- + diff --git a/team/task_contributors/spatially_variable_genes/luca_pinello/index.qmd b/team/task_contributors/spatially_variable_genes/luca_pinello/index.qmd new file mode 100644 index 00000000..b958a224 --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/luca_pinello/index.qmd @@ -0,0 +1,12 @@ +--- +title: Luca Pinello +image: https://www.github.com/pinellolab.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/pinellolab +--- + diff --git a/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd b/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd new file mode 100644 index 00000000..c215576a --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd @@ -0,0 +1,15 @@ +--- +title: Sai Nirmayi Yasa +image: https://www.github.com/sainirmayi.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/sainirmayi + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0009-0003-6319-9803 +--- + diff --git a/team/task_contributors/spatially_variable_genes/zain_m_patel/index.qmd b/team/task_contributors/spatially_variable_genes/zain_m_patel/index.qmd new file mode 100644 index 00000000..e4472a27 --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/zain_m_patel/index.qmd @@ -0,0 +1,12 @@ +--- +title: Zain M. Patel +image: https://www.github.com/doczmp.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/doczmp +--- + diff --git a/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd b/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd new file mode 100644 index 00000000..02fca6cd --- /dev/null +++ b/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd @@ -0,0 +1,15 @@ +--- +title: Zhijian Li +image: https://www.github.com/lzj1769.png +role: Author, Maintainer +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/lzj1769 + - icon: fa-brands fa-orcid + text: ORCID + href: https://orcid.org/0000-0002-1523-1333 +--- + From 8fe354b396f84904a5f5b294abe0d8f58eb778c9 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Fri, 22 Nov 2024 16:20:10 +0100 Subject: [PATCH 2/7] hack for fontawesome icons --- team/index.qmd | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/team/index.qmd b/team/index.qmd index 1db646df..2cfc6fe5 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -59,7 +59,10 @@ listing: type: grid template: members.ejs sort: '' -css: team.css +css: + - team.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css --- ## Core members From e151a789f7d0167050f6b1dde7b7a8bcc464ed22 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Fri, 22 Nov 2024 17:09:05 +0100 Subject: [PATCH 3/7] Create random avatar when none is available --- .gitignore | 1 + team/_rerender_contributors.R | 22 ++++++++++++++++-- team/index.qmd | 6 ++--- .../guanao_yan/avatar.png | Bin 0 -> 9892 bytes .../guanao_yan/index.qmd | 2 +- 5 files changed, 25 insertions(+), 6 deletions(-) create mode 100644 team/task_contributors/spatially_variable_genes/guanao_yan/avatar.png diff --git a/.gitignore b/.gitignore index 852a3c27..f45322da 100644 --- a/.gitignore +++ b/.gitignore @@ -13,3 +13,4 @@ /site_libs *.rmarkdown /.luarc.json +/tmp diff --git a/team/_rerender_contributors.R b/team/_rerender_contributors.R index 46e667fe..2ea571c5 100644 --- a/team/_rerender_contributors.R +++ b/team/_rerender_contributors.R @@ -57,8 +57,18 @@ render_author <- function(author) { email_clean <- tolower(stringr::str_trim(author$info$email)) checksum <- digest::digest(email_clean, algo = "md5", serialize = FALSE) paste0("https://www.gravatar.com/avatar/", checksum) - } else { + } else if (file.exists("/images/avatar.svg")){ "/images/avatar.svg" + } else { + # generate random avatar + name <- strsplit(author$name, " ") + url <- paste0("https://avatar.iran.liara.run/username?username=",name[[1]][[1]],"+",name[[1]][[2]]) + output_dir <- file.path("tmp", gsub(" ", "_", author$name)) + if (!dir.exists(output_dir)) { + dir.create(output_dir, recursive = TRUE) + } + download.file(url, file.path(output_dir, "avatar.png"), mode = "wb") + "avatar.png" } # process links @@ -174,6 +184,11 @@ for (task_name in names(tasks)) { } writeLines(txt, file_path) + + if (file.exists(file.path("tmp", gsub(" ", "_", author$name), "avatar.png"))) { + file.rename(file.path("tmp", gsub(" ", "_", author$name), "avatar.png"), file.path(dirname(file_path), "avatar.png")) + } + } } @@ -212,7 +227,10 @@ listing: template: members.ejs sort: '' ", paste(teams_headers, collapse = "\n"), " -css: team.css +css: + - team.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css --- ## Core members diff --git a/team/index.qmd b/team/index.qmd index 2cfc6fe5..fe8bf886 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -60,9 +60,9 @@ listing: template: members.ejs sort: '' css: - - team.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css + - team.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css + - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css --- ## Core members diff --git a/team/task_contributors/spatially_variable_genes/guanao_yan/avatar.png b/team/task_contributors/spatially_variable_genes/guanao_yan/avatar.png new file mode 100644 index 0000000000000000000000000000000000000000..58127be697bb9c33f76c9ac498c46431183e73a6 GIT binary patch literal 9892 zcmYj%byQSe)b^dBdkE=9Lg@}^21GzWI;0T^De01-Ln%SJQyS@JKmm~+gNPwZ1if+*xza+;jKY`<(sk{X8++nvaR_Y4HI7AbO$-*8u z7i??w$8Z4s?~~tEmJ9&Qz!SKFo^STvqFAt~WGRoo;5g6nNG9hZr` z>tb-zj8pq85qm~HZ%ap4S67Qe*W##3W0 zVDC}3V?3JyXw^{C`s`#$k5QiG^PP2dRQ5XC-@r}DF~3m{T-I`iw(}(oErV&E5B8~Q zB5~;iz0WZVp-_CiLZ~$#utLAo|LDe*6S2E$aSp{LLbrQdEQet>hJDP*Sb#KQNc6%v zDfFH75n&!lFs^w+oXn)))srCe__{8*yxFg{Y>z0B-Cj1Ore zh2!-8R7KWs9rM)|cB;!-%>H_1O{N2op^^d)Mo^<8UGi4l=^0eyb+|~$qVC>gWnAO} z;Vx^TxPD>qiMLM=hfL%bRxG5o3=z?H#fdFtxTh>64Qd2IzVND%hyiAYkahw+qwulK z>%gdL;t!+6K>9l;r@fq#l3|L%o!&rpM2W-Q=3hp{OT7)w&Vun}``aspN{o_Z&%3uT zGtVL;X~guqLJ&^WMlz0np9X4^kje~KT6!4~08z5b7rhKV^q-_Ogx*8*bvJL%^Kc4lVb9oss3|{8fEk5U zVs0NaHS7AkEieSfN2oBoLE~F@Cr8&LFSmT@hi4h<2me03%uO5)8yd3sjpycEEu*b- zSwkwMfG5gkCq%5MAQy4EmyAL>>!rp z^%$Tu%~Ad`MGW}(2X^-uGu$UF4uarLPmR1NJb<*$ZS(Z$jm@T`MO#WYoGZhO9yk-o zZ$=U^;z#vBHu#}m>!cFu;OQaPG#6umdHnWX)ZE2p5KB9JF_9{)<8ugwNzUW@;cKWH zqJ**Y9nTK0bOS8rmGeA2B*_YXWkd8AB@};Bg~9sbo9hmPmxAgh6hKXN6HcjCPgr^n zXTq=8Cnv&gErUC^vib&*BCqm(=yU^wavzV?+p0M|{V|Xx31cmb+sub4^;iferw_=J zKNidz9m#GoGD*~|gn?sgr%N9ylB0F%0ndxumt06!$a5Dj$|SO8X4>17&9jB&2C3)? z9hcr%#By+hkjR`8ZI8gW*R!u&F?Y6QUwFZaN;F9Fz19YH-*wB%kuF+;|82*;c*^f~ z?U`3Qw#}oW8Uuv|u7pU^$H|5kh@M15w}?Y-8U{BXS$ZWJvEQ=G*VXKs#H+MCS)<}G zA+!uATMjOoQn3EeCw!j>pXoVs%V->I zmpZApF!+gm&#;&J&`a6xPF|Ex=xxFPuPko!CjK#HW@WR)6K8S1PKee2fsvt4)09G^ zS}YWHaxI5f*aNuzd+3wjLK8(H?d=K14Dh$%{6NUn)kDV2X>O;#Z*5mGCk`;YyjqMI zY=!X5fY8&^masOy2@iZhY`SP#soOh#69!vWyoEZbmzR&waZpV5v*;%nHUaGgW5aWXN{@H!t1cMWH+R8IZ&;#W1z zVU1Y;mpNzj0y{7>{ZK5*rby%sODU=d&f2s7H0#x&l)_JZdBZ0|;=P?h=7UtM3<47` zdPhfV`*$wf+c0rOM6yZr7g@P4@vWi-D!2QWympoZu8@)E0BAn3es$Uaf4CKWF&EwJ zfq3Ur8gn4Dq{ITJ?#I>|e$vJ$5j2ut&}EBV-Z1D^`hy=1LW3=VI~)K`l1G|nyS(?_ z6cO7Sksvaj=ucgPi%u$@QB^^NdNoVcVui&#J6=Z#uZ)w*g;^7#xG~4^wp?D2Y(7H>rdVgHg&XL z)#@$=e*^b7hXC5P;+lZPdJwgou-?3qLLgsPuxbZvYI+5;gtMe#)6%+RZ;$Fe1Uem( ziBL_tGUc#73H)O-T{E3PwMSl9&^%1HGrhBWiqvmIuzKIW&nm00-G?Hx#OBiHPELm- zVC2kKd^6MYr~9QH0H&0bEXE2?*EJr?FGq9GH-o49#g%}7aL87rzZPqFv>eA(`_dz5 zJLtHe+a}EHqDL99KEk))=0z93#0ioCR=C^Q@K{jAm2r;ye4f)&IqGoN^jld4mT*}O z&)k-F|EN@F(Q_brYiIHzLNyToFMIWZqvN>D`Jy4&rv;K>B{{|W5s6RrhdpMhAIZ)| zX8Hr9Q8sa4s$VU}vb-qBGbM^)4;L6V;cda>(RL?&QMO{;-x6$ybCeV1ujUXonGCO-pa zS1-c<&5}wWwh*p`r}-Q}Jdm;G3Rk86KprHq&n{oPY(a}14@56?3`M})shYUej5YPA zK7Ep2K&wn^3(dX|-FH5F3hn zdcyo;F-}{Hq_3-M#hzk98`n_;pExQ?%z$DxTd99OHv=!gjw5?+uI`0h-@5nb_0ztL zWQ@eBG1f*lj@vd8O)X0n(eVTK2s*3>N9(0HG4TS-s#1CrI|h6dHe1j_sWs) zugnLdH4wMWEvCTy>T?khjkg~iEB}1b0fdXn+Gu*umy}kWYx0n z(iz7AgJ|Pk>K8TZq!38s!CV-5hYy>rLJ^ZQGYpB0XOL*N!J*H{_&b^v71}VCJK2)@ z%k$T}58R*7F`Pi|O`(900D_IbD}2t-Otk-GgJ!7WgD@w~i?nR-%j|btijDNhA~v}T zc?k1{`udecmYXZTNsH^_!HxsPICxdON2Xh_T>Qb$n6*bftR0OM$^?{1kBy9Wf2_6_ zFStzV0Ot-Lr+L}g+35JLfFwCrbHbsugRNnHwx2U)&Ni&spI)yI31-+nhNs1w0_j^i zyi>9{U-QjEcbpv*T-6D(7n%!vR~0FEjDY^qJ;8)O!>I*3Ur7nE z!!n!Y+WmxImuW?@aSFQL$0A{bm*swn!y-t0WTWz2I3p%R{W1D{s5Xr4d?_mMtA z8Z3AAYCha8xTkba__c>%Pd!;ITgmii2G2)1j3y0sK+z`Tx9tlvuDIY=RTcJ2?e}nU z1BL$3$pPW*9TOKVJyy#$2?ae}L6dt8>T24ZzMnSMa7Y*wuXAMtOGTEF(k!NbUMPeM z8`Nqx4Uhmdix?Q22{(g7Q2E%`NiUMfj9Oc$t{H^=c_wzmhES=rJreJl5~fI7FDx zS@gvk?)e$5k2Y)TPZwKXX}68v$fRV9#|D%XSwykl{az<(#=-N6wa8*m&a4HfzgQYl zVPinx*f?>+MM>5TtMBwH>kh_(v7NZW!Mzui7tH8U(=mF4r@ngkhJH$L`{2k|+xxJe zwpl|He`09=Cuj-cOxB!s%gO0;2xlG~?v&;ZHI9h*TKQ34)8RpVY^*ioGe%s@@tOJ9 z+-U<(CK<U4@&NrougX6w3#Mz`pM$^CHS@=7YK)cb6 zMfH;%?>*Mgm(x7Hb|Z@D7;<~RTQ5wnz-xyO#zxT&>S=|iO*10S%ilrJ)8Sp9I+%mW zM(?+ZHL}KD%$45e-?VW_I>aaCN%OZkv|!;mK^3vBq#b?W1`VNS{55fe`wJ>6o4XP5 zBHu&nVOnCMVUbw#DX!2sRbWC^cvJB6{ba%PL`QZo@o2x3)o;QJ?6rcfLb$E9xD zKRUMeCd*W)?9(x`b`i@GbA15VHzsYe;*?muj>Nr$E zJ@2ADBV1cLRE!PHs5Ef68_;7TrT4q@d+GzTzPG=p{C#62vt^8Sf1;S&IydeamSyTx zNR`O!V%$cxsn>xa=&f)3J<^9AaqzEs;v~m%ckUw%=tj5o&7$9Z1fs6X-{)hSa~=^r zLi@&d-qdeA3+}i3jGC$>FWt1G#D3^j4+wD1g#A>p9w>O37g6Cc?mGXToy)YD$K}(n z-lU8eW2QR+J9GC4E8(B9V={&_>?*^RwS~d>X~rgAo!2!r?g{S+_z>K3axQ*kvpj&d ziMR_2JO9?2uOE!2iG>PRJWL;DtWwTHc+yRqhx_zX@jsb!;*6}5`r1G2DWY2N$BWE;Ffhyc<5Ryn>y3Px$ZN6C*tGuGxTakoZWJ!2AE2h<#az) zZfjH~8kk%cr~)70JJfc|&)UZnQH=g~iO@Py<4&?i1Lsbglai+PGiYPIq0Lnc2~I?cbc z!cm0wxb1USm;HRb^6{A@J3H6&R)LLUjz{;n^nv2Bk+Em(S(zgIuR~T{hjkd(mi~Or zNGo%)Z0zY`7!;8;6sTEMENt4Tm7tffIof&~T&*L>U3;pXt_!gUEQSBd z`d2)Z-lR8M!yjyReY||QM%zrk5F-=dIkF78k&wpEPgmALjpd=Xe2O;~Gnkc}Qq!$l zitHy?iA?cf1vg4elQ&=3gxAI?_^}ih7wxA7xAPv^M6PRba8PVOBM^<;K(A7i=VIhh zwjalCMuz)HirPs{;iK`1kZD7UDIc5L0)H2D#rosK^~& zNo4MZo!R#{i}&scSxYO&SMivoLBl|Ea$i|be@zb=kW=ayW;a70zTo=POjeic!U6nF z`Owd+E(Puytr-keFpX=?Dmex0@Scc>I>?&Om8A70sRSKH!~vz{2d^zur1`j)#MkPFJ1D=DyXoDbf=%m-HcmCe4ge z>Dx&mAQ9Bau1vHYSZh&ObDV}cvKyuM&kIpuIOwi)>P9Jvxk## z|5KpQ=BFuR!pN%XpYzYgytSS55ij$cQN59dj3nY+2O`_dAo**Dt-tNQ3)T%{^BD3r4uhwfF*|!^3%^OL zHnyXUk0K;dOa_oy^k~)ZrKX8ttaFJKVh_OeUs5okUfY>N&fS$&@w&oGUe+EXu>HzDCN`lIxI;ux)uvsU) zo-POf3fI6Tdk}*#qkaH9+jt-y`ym^INFuJ4Dn(n5ym@N;!s|kX+5z7LhJ|E4^{^NB zwgYJDbDOpzRLL;f%nxLkfL9Be7ANhh&bKB>Ai`3@kzrVf9+HcaNCU&Pvm=B7W+dPS=neeGV}o{*II=? zVaKg#Twu8*ZKkev+R{>FbFkEEN5;Bzks?;3abopQH(Qe;+bgvuD6`o`*_PSayogyR zv7%y)3J4I%6vG05(wyM#8gu#L9;TWIs{QFTU^A>jPi7gL90)B8HZS#2##^I}&xWxUnjP{D$t@B3rZctRG}C!4gsbJym# zusf&fP?WDVHp@)Uf78lHW*3~z)6p6jnl8wnNEp1&V>$BJJG+B_X23n7g zEufbB0p&a!Il?$g!ec+05@?Cnkh)q0rm+ZBVl&2#@7Q&k+<=}j4eN^JcWd_OqhbD; zF1!4HqsX=LLD*(nny>0PmN-Twdm3faZ65J`R|o)J(a@xO_21L>?50S`m^hku@;%@W z7QBtfRkRmVIcHkChls9_6>D^{^dI8mRlfZ8LD%0R2#kc;$7O@lf1rl)Sz7c+Cm3h9lVcJ1xI%Bf+8@lY~jdt?I=< zw55ks6gEo+DOfc{YSA^u5g5La1<~iv6c4;)(pwpy#rCzeAn8NaOC__YMqU6&lyhYi zdK>HZ_fMH1Y>X;GfK5sQSD1>0Q(58gSO32PV$nwq{$6`3isQ-`)d6tI5k`qaRIdk@ zg}ThMPbU&sEjDSPF(?@)$_+yU>#O<~lNY*%a(Z4r_vJXa0lz$S;3EWDOxl1RU|EYz`O|R_UmH-5V`*n;(9=aLn^b|c6)|r;VOC=P)|_;skm}y3uAA{ zt{2Ka_bsh)do`` zpMQQ|f-6eP(01_D+u(&O4iQBkMHSC!>B08qsx$D!Y)tTh1x=3ae$@IXQH z$&f>yveLgEke=PgurNzI0bzSz9T)|ccNsZ|!qw~F{w{{14R@N`X+4k!!L-N^x@utS z?6WRo-T`ejot6a2ir$yNu@qLYP1$=xE|ayhKMF1+128((kq2YlU-C3G14+Q|fk&$5F@5X-}SeKTLl65WJId?TIgrk$bfI7c?G$s*>h%PxQ>CP(*2-~dTlMEfdaEYAMv0Mq>-Tcx%-G z)!*wh=hd{)(6jFDuNoi`CIBJ_FmgHMOYsQ=DGOcOoE&q7j#El0!6}^_+TKPp zie7gr-fxv_tE?dO8?YexP5?|zSD4AjyrBVgH;l3e`FA(|FX87ZVDaX3Eswi>&1m^G7x=ZWDE)! zS}L{~IIcccJ>;3xrbd16lU-)yRxWlcnP2r%zFyrKml@PqtG1T0)TNZ^le&2 z?9noSUp>nD1yjmcA3X=6p<|F6Wpx16A(%|Qmc);Xw4muAmkP3@AAuPYnJ&YGV%p~( zwPqa_5I(EI5pd357}3ph_g?r3iN3jS3Wk7m-T_?hII8#NWn}}d;I7u9j0|^mV1;YN z`)x8yk^jf$k|0JvN}g9Rdf!`IJUH3WDfvh;wU`%R16fghOljQw*=-)y>PGSj-u>D^36vf*&)>m>d3nEad`5iRm+75Z+mO!PrWkLy%wDLq2~ZMR9`* zq0{H_O!-pd-_EHFqvmA?*ZzPEla_Xx{CH6)!bsy;c*udDiAi@>RnblIlR2nBAxM#q zu_^ljNF9)`Q8g@zNQtM+} zA^xUViNvxI$^S->&O3l19X$lv%+i$))8EuLJZO@NHlC~iENx#Q576|aw*XS4@;Ewt z{2R*0AM~&Z!IRcEXkzV{0c6ZSOm+kBaDU8L;B7DsErzC?(^9N!YUxicR};U-Ee5i!TVX$m zR-{2kuEG9NVl2BG8lop+XWTgd=_@S%Pdsr)fV2kREWPtHO77(MCOY>a_xf#eSt3*b zveY;K2AfZG1A1?`>5e0RdhNuUGH}p5`Tqnfrhu(!4rf0R)Rz!`x?fT8vLuU%?g4;J zJH`DGvrdPSTU3Jr=>afWmmMc8i8?_IaMbSU0KbZNHs$!E=l5nHtr^iZsXlbur9u;w z0Li1i)u`9|twmGY^5v@d2)y|>m&1SJRe$>nSP&I*Lw=j&JW%k0_+rDgB-8W0o?V*! zuNWu&9oUoxj1-Vl)K{E~n^e1)6S|-zV*Odl$nWEbYT^{lV!){C_NCl#L)&vI!DDv=h$qWhv=4Y_^C#6(C5PiuSVK0dB7T^IAt-Qo? zuz}8}DAx)kAKkIs>(8q*{|Se}V$PpHRH4sJoemywXVJx}P&E|t+~1fZ)C1C$<;zRv z5R^cir3>an0K9QQrIEX=+<|FoTBQob!NG~eJaiaIRI{)BF*L@myuw5=RtLz3$+M&r zM7JSgI)VB~pCP(#nLj|H@J$0Fu)4b7%tl~yLh8Xu-W2wc0p-l>_;Mw@u%a67DKPU# kTGeTq(CDOxkMM5~Dm7iaOf0?zl$`-jlr`Zsik6}O1AH#4SO5S3 literal 0 HcmV?d00001 diff --git a/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd b/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd index 46a6bee5..9b6b04fd 100644 --- a/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd +++ b/team/task_contributors/spatially_variable_genes/guanao_yan/index.qmd @@ -1,6 +1,6 @@ --- title: Guanao Yan -image: /images/avatar.svg +image: avatar.png role: Author about: template: jolla From 7bc853f8461f5c660dbd02bb99f9cb422a2c097d Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Fri, 22 Nov 2024 17:27:58 +0100 Subject: [PATCH 4/7] force changes --- team/index.qmd | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/team/index.qmd b/team/index.qmd index fe8bf886..9443767f 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -120,6 +120,4 @@ css: ### Spatially Variable Genes :::{#spatially_variable_genes} -::: - - +::: \ No newline at end of file From 553316aa150dde638730714f3053a74c46cfd797 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 25 Nov 2024 14:29:12 +0100 Subject: [PATCH 5/7] Fix orcid icon --- team/_rerender_contributors.R | 7 ++----- team/core_members/burkhardt_daniel/index.qmd | 2 +- team/core_members/cannoodt_robrecht/index.qmd | 2 +- team/core_members/gigante_scott/index.qmd | 2 +- team/core_members/luecken_malte/index.qmd | 2 +- team/index.qmd | 5 +---- .../batch_integration/daniel_strobl/index.qmd | 2 +- .../batch_integration/kai_waldrant/index.qmd | 2 +- .../batch_integration/malte_luecken/index.qmd | 2 +- .../michaela_mueller/index.qmd | 2 +- .../batch_integration/nartin_kim/index.qmd | 2 +- .../denoising/kai_waldrant/index.qmd | 2 +- .../juan_a_cordero_varela/index.qmd | 2 +- .../kai_waldrant/index.qmd | 2 +- .../luke_zappia/index.qmd | 2 +- .../sai_nirmayi_yasa/index.qmd | 2 +- .../andrew_benz/index.qmd | 2 +- .../artur_szaata/index.qmd | 2 +- .../jalil_nourisa/index.qmd | 2 +- .../mengbo_wang/index.qmd | 2 +- .../rico_meinl/index.qmd | 2 +- .../tianyu_liu/index.qmd | 2 +- .../tin_m_tunjic/index.qmd | 2 +- .../predict_modality/kai_waldrant/index.qmd | 2 +- .../sai_nirmayi_yasa/index.qmd | 2 +- .../sai_nirmayi_yasa/index.qmd | 2 +- .../zhijian_li/index.qmd | 2 +- team/team.css | 18 ++++++++++++++++++ 28 files changed, 46 insertions(+), 34 deletions(-) diff --git a/team/_rerender_contributors.R b/team/_rerender_contributors.R index 2ea571c5..f872a7bd 100644 --- a/team/_rerender_contributors.R +++ b/team/_rerender_contributors.R @@ -89,7 +89,7 @@ render_author <- function(author) { }, orcid = function(value) { list( - icon = "fa-brands fa-orcid", + icon = "fa-brands--orcid", text = "ORCID", href = paste0("https://orcid.org/", value) ) @@ -227,10 +227,7 @@ listing: template: members.ejs sort: '' ", paste(teams_headers, collapse = "\n"), " -css: - - team.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css +css: team.css --- ## Core members diff --git a/team/core_members/burkhardt_daniel/index.qmd b/team/core_members/burkhardt_daniel/index.qmd index 418683ac..85217032 100644 --- a/team/core_members/burkhardt_daniel/index.qmd +++ b/team/core_members/burkhardt_daniel/index.qmd @@ -21,7 +21,7 @@ about: - icon: bi-linkedin text: LinkedIn href: https://www.linkedin.com/in/daniel-burkhardt/ - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0001-7744-1363 --- \ No newline at end of file diff --git a/team/core_members/cannoodt_robrecht/index.qmd b/team/core_members/cannoodt_robrecht/index.qmd index 65083c3d..2acb8b67 100644 --- a/team/core_members/cannoodt_robrecht/index.qmd +++ b/team/core_members/cannoodt_robrecht/index.qmd @@ -21,7 +21,7 @@ about: - icon: bi-linkedin text: LinkedIn href: https://www.linkedin.com/in/robrecht-cannoodt/ - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0003-3641-729X --- diff --git a/team/core_members/gigante_scott/index.qmd b/team/core_members/gigante_scott/index.qmd index 1e88d5ce..658f9411 100644 --- a/team/core_members/gigante_scott/index.qmd +++ b/team/core_members/gigante_scott/index.qmd @@ -22,7 +22,7 @@ about: - icon: bi-linkedin text: LinkedIn href: https://www.linkedin.com/in/scottgigante/ - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-4544-2764 --- diff --git a/team/core_members/luecken_malte/index.qmd b/team/core_members/luecken_malte/index.qmd index 94075bbf..42cdf65d 100644 --- a/team/core_members/luecken_malte/index.qmd +++ b/team/core_members/luecken_malte/index.qmd @@ -21,7 +21,7 @@ about: - icon: bi-linkedin text: LinkedIn href: https://www.linkedin.com/in/malte-lücken-b8b21049/ - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0001-7464-7921 --- diff --git a/team/index.qmd b/team/index.qmd index 9443767f..8714946d 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -59,10 +59,7 @@ listing: type: grid template: members.ejs sort: '' -css: - - team.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/all.css - - ../_site/site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css +css: team.css --- ## Core members diff --git a/team/task_contributors/batch_integration/daniel_strobl/index.qmd b/team/task_contributors/batch_integration/daniel_strobl/index.qmd index 10b857b1..92d4b3ce 100644 --- a/team/task_contributors/batch_integration/daniel_strobl/index.qmd +++ b/team/task_contributors/batch_integration/daniel_strobl/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/danielStrobl - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-5516-7057 --- diff --git a/team/task_contributors/batch_integration/kai_waldrant/index.qmd b/team/task_contributors/batch_integration/kai_waldrant/index.qmd index a451c617..d148ef4e 100644 --- a/team/task_contributors/batch_integration/kai_waldrant/index.qmd +++ b/team/task_contributors/batch_integration/kai_waldrant/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/KaiWaldrant - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-8555-1361 --- diff --git a/team/task_contributors/batch_integration/malte_luecken/index.qmd b/team/task_contributors/batch_integration/malte_luecken/index.qmd index 5f38b835..de2ec2f7 100644 --- a/team/task_contributors/batch_integration/malte_luecken/index.qmd +++ b/team/task_contributors/batch_integration/malte_luecken/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/LuckyMD - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0001-7464-7921 --- diff --git a/team/task_contributors/batch_integration/michaela_mueller/index.qmd b/team/task_contributors/batch_integration/michaela_mueller/index.qmd index 0a26edb7..e922c964 100644 --- a/team/task_contributors/batch_integration/michaela_mueller/index.qmd +++ b/team/task_contributors/batch_integration/michaela_mueller/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/mumichae - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-1401-1785 --- diff --git a/team/task_contributors/batch_integration/nartin_kim/index.qmd b/team/task_contributors/batch_integration/nartin_kim/index.qmd index b094225e..74815b62 100644 --- a/team/task_contributors/batch_integration/nartin_kim/index.qmd +++ b/team/task_contributors/batch_integration/nartin_kim/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/martinkim0 - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-8555-1361 --- diff --git a/team/task_contributors/denoising/kai_waldrant/index.qmd b/team/task_contributors/denoising/kai_waldrant/index.qmd index a451c617..d148ef4e 100644 --- a/team/task_contributors/denoising/kai_waldrant/index.qmd +++ b/team/task_contributors/denoising/kai_waldrant/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/KaiWaldrant - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-8555-1361 --- diff --git a/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd b/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd index 38239559..f213306b 100644 --- a/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd +++ b/team/task_contributors/dimensionality_reduction/juan_a_cordero_varela/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/jacorvar - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-7373-5433 --- diff --git a/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd b/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd index a451c617..d148ef4e 100644 --- a/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd +++ b/team/task_contributors/dimensionality_reduction/kai_waldrant/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/KaiWaldrant - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-8555-1361 --- diff --git a/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd b/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd index 33aa2b77..67e4f98c 100644 --- a/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd +++ b/team/task_contributors/dimensionality_reduction/luke_zappia/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/lazappi - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0001-7744-8565 --- diff --git a/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd b/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd index c215576a..426e9b0d 100644 --- a/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd +++ b/team/task_contributors/dimensionality_reduction/sai_nirmayi_yasa/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/sainirmayi - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-6319-9803 --- diff --git a/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd b/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd index 11d9690f..f4062430 100644 --- a/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd +++ b/team/task_contributors/perturbation_prediction/andrew_benz/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/andrew-benz - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0002-8118-1861 --- diff --git a/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd b/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd index 5d3bd9c5..80a9699e 100644 --- a/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd +++ b/team/task_contributors/perturbation_prediction/artur_szaata/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/szalata - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/000-0001-8413-234X --- diff --git a/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd b/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd index 127a6417..6a54aa6d 100644 --- a/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd +++ b/team/task_contributors/perturbation_prediction/jalil_nourisa/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/janursa - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-7539-4396 --- diff --git a/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd b/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd index ba47b45d..daf20de7 100644 --- a/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd +++ b/team/task_contributors/perturbation_prediction/mengbo_wang/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/wangmengbo - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-0266-9993 --- diff --git a/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd b/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd index ffffe6d9..76e256e0 100644 --- a/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd +++ b/team/task_contributors/perturbation_prediction/rico_meinl/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/ricomnl - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0003-4356-6058 --- diff --git a/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd b/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd index 49af5220..b9742323 100644 --- a/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd +++ b/team/task_contributors/perturbation_prediction/tianyu_liu/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/HelloWorldLTY - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-9412-6573 --- diff --git a/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd b/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd index 5cf3ab4d..29ea24d5 100644 --- a/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd +++ b/team/task_contributors/perturbation_prediction/tin_m_tunjic/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/ttunja - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0001-8842-6548 --- diff --git a/team/task_contributors/predict_modality/kai_waldrant/index.qmd b/team/task_contributors/predict_modality/kai_waldrant/index.qmd index a451c617..d148ef4e 100644 --- a/team/task_contributors/predict_modality/kai_waldrant/index.qmd +++ b/team/task_contributors/predict_modality/kai_waldrant/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/KaiWaldrant - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-8555-1361 --- diff --git a/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd b/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd index c215576a..426e9b0d 100644 --- a/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd +++ b/team/task_contributors/spatial_decomposition/sai_nirmayi_yasa/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/sainirmayi - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-6319-9803 --- diff --git a/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd b/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd index c215576a..426e9b0d 100644 --- a/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd +++ b/team/task_contributors/spatially_variable_genes/sai_nirmayi_yasa/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/sainirmayi - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0009-0003-6319-9803 --- diff --git a/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd b/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd index 02fca6cd..e774a1b9 100644 --- a/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd +++ b/team/task_contributors/spatially_variable_genes/zhijian_li/index.qmd @@ -8,7 +8,7 @@ about: - icon: bi-github text: GitHub href: https://github.com/lzj1769 - - icon: fa-brands fa-orcid + - icon: fa-brands--orcid text: ORCID href: https://orcid.org/0000-0002-1523-1333 --- diff --git a/team/team.css b/team/team.css index 100ffefc..9afd04aa 100644 --- a/team/team.css +++ b/team/team.css @@ -68,3 +68,21 @@ margin: 0.1em; text-decoration: none; } + + +/* Custom icons */ + +.fa-brands--orcid { + display: inline-block; + width: 1em; + height: 1em; + --svg: url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 512 512'%3E%3Cpath fill='%23000' d='M294.75 188.19h-45.92V342h47.47c67.62 0 83.12-51.34 83.12-76.91c0-41.64-26.54-76.9-84.67-76.9M256 8C119 8 8 119 8 256s111 248 248 248s248-111 248-248S393 8 256 8m-80.79 360.76h-29.84v-207.5h29.84zm-14.92-231.14a19.57 19.57 0 1 1 19.57-19.57a19.64 19.64 0 0 1-19.57 19.57M300 369h-81V161.26h80.6c76.73 0 110.44 54.83 110.44 103.85C410 318.39 368.38 369 300 369'/%3E%3C/svg%3E"); + background-color: currentColor; + -webkit-mask-image: var(--svg); + mask-image: var(--svg); + -webkit-mask-repeat: no-repeat; + mask-repeat: no-repeat; + -webkit-mask-size: 100% 100%; + mask-size: 100% 100%; + vertical-align: -.125em; +} \ No newline at end of file From b8ebfe191da36c34f317a4fb69f12453e262b163 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 25 Nov 2024 16:10:28 +0100 Subject: [PATCH 6/7] remove old authors rendering --- team/_rerender_contributors.R | 1 - .../_old_data/alejandro_granados/index.qmd | 12 ------------ .../_old_data/alex_tong/index.qmd | 12 ------------ .../_old_data/andrew_benz/index.qmd | 15 --------------- .../_old_data/artur_szaata/index.qmd | 15 --------------- .../_old_data/bastian_rieck/index.qmd | 12 ------------ .../_old_data/ben_demeo/index.qmd | 12 ------------ .../_old_data/daniel_strobl/index.qmd | 12 ------------ .../_old_data/dongyuan_song/index.qmd | 12 ------------ .../_old_data/giovanni_palla/index.qmd | 12 ------------ .../_old_data/guanao_yan/index.qmd | 9 --------- .../_old_data/jalil_nourisa/index.qmd | 15 --------------- .../_old_data/jingyi_jessica_li/index.qmd | 12 ------------ .../_old_data/jiwei_liu/index.qmd | 18 ------------------ .../_old_data/juan_a_cordero_varela/index.qmd | 15 --------------- .../_old_data/kai_waldrant/index.qmd | 15 --------------- .../_old_data/kaiwen_deng/index.qmd | 15 --------------- .../_old_data/louise_deconinck/index.qmd | 12 ------------ .../_old_data/luca_pinello/index.qmd | 12 ------------ .../_old_data/luke_zappia/index.qmd | 12 ------------ .../_old_data/mengbo_wang/index.qmd | 15 --------------- .../_old_data/michaela_mueller/index.qmd | 12 ------------ .../_old_data/michal_klein/index.qmd | 12 ------------ .../_old_data/nikolay_markov/index.qmd | 12 ------------ .../_old_data/rico_meinl/index.qmd | 15 --------------- .../_old_data/sai_nirmayi_yasa/index.qmd | 15 --------------- .../_old_data/tianyu_liu/index.qmd | 15 --------------- .../_old_data/tin_m_tunjic/index.qmd | 15 --------------- .../_old_data/wesley_lewis/index.qmd | 12 ------------ .../_old_data/xueer_chen/index.qmd | 15 --------------- .../_old_data/zain_m_patel/index.qmd | 12 ------------ .../_old_data/zhijian_li/index.qmd | 15 --------------- 32 files changed, 415 deletions(-) delete mode 100644 team/task_contributors/_old_data/alejandro_granados/index.qmd delete mode 100644 team/task_contributors/_old_data/alex_tong/index.qmd delete mode 100644 team/task_contributors/_old_data/andrew_benz/index.qmd delete mode 100644 team/task_contributors/_old_data/artur_szaata/index.qmd delete mode 100644 team/task_contributors/_old_data/bastian_rieck/index.qmd delete mode 100644 team/task_contributors/_old_data/ben_demeo/index.qmd delete mode 100644 team/task_contributors/_old_data/daniel_strobl/index.qmd delete mode 100644 team/task_contributors/_old_data/dongyuan_song/index.qmd delete mode 100644 team/task_contributors/_old_data/giovanni_palla/index.qmd delete mode 100644 team/task_contributors/_old_data/guanao_yan/index.qmd delete mode 100644 team/task_contributors/_old_data/jalil_nourisa/index.qmd delete mode 100644 team/task_contributors/_old_data/jingyi_jessica_li/index.qmd delete mode 100644 team/task_contributors/_old_data/jiwei_liu/index.qmd delete mode 100644 team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd delete mode 100644 team/task_contributors/_old_data/kai_waldrant/index.qmd delete mode 100644 team/task_contributors/_old_data/kaiwen_deng/index.qmd delete mode 100644 team/task_contributors/_old_data/louise_deconinck/index.qmd delete mode 100644 team/task_contributors/_old_data/luca_pinello/index.qmd delete mode 100644 team/task_contributors/_old_data/luke_zappia/index.qmd delete mode 100644 team/task_contributors/_old_data/mengbo_wang/index.qmd delete mode 100644 team/task_contributors/_old_data/michaela_mueller/index.qmd delete mode 100644 team/task_contributors/_old_data/michal_klein/index.qmd delete mode 100644 team/task_contributors/_old_data/nikolay_markov/index.qmd delete mode 100644 team/task_contributors/_old_data/rico_meinl/index.qmd delete mode 100644 team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd delete mode 100644 team/task_contributors/_old_data/tianyu_liu/index.qmd delete mode 100644 team/task_contributors/_old_data/tin_m_tunjic/index.qmd delete mode 100644 team/task_contributors/_old_data/wesley_lewis/index.qmd delete mode 100644 team/task_contributors/_old_data/xueer_chen/index.qmd delete mode 100644 team/task_contributors/_old_data/zain_m_patel/index.qmd delete mode 100644 team/task_contributors/_old_data/zhijian_li/index.qmd diff --git a/team/_rerender_contributors.R b/team/_rerender_contributors.R index f872a7bd..4b7987d1 100644 --- a/team/_rerender_contributors.R +++ b/team/_rerender_contributors.R @@ -193,7 +193,6 @@ for (task_name in names(tasks)) { } teams <- list.dirs("team/task_contributors", full.names = FALSE, recursive = FALSE) -teams <- teams[!teams %in% c("_old_data")] teams_headers <- paste0( " - id: ", teams, " diff --git a/team/task_contributors/_old_data/alejandro_granados/index.qmd b/team/task_contributors/_old_data/alejandro_granados/index.qmd deleted file mode 100644 index ea22612e..00000000 --- a/team/task_contributors/_old_data/alejandro_granados/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Alejandro Granados -image: https://www.github.com/agranado.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/agranado ---- - diff --git a/team/task_contributors/_old_data/alex_tong/index.qmd b/team/task_contributors/_old_data/alex_tong/index.qmd deleted file mode 100644 index e839bde0..00000000 --- a/team/task_contributors/_old_data/alex_tong/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Alex Tong -image: https://www.github.com/atong01.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/atong01 ---- - diff --git a/team/task_contributors/_old_data/andrew_benz/index.qmd b/team/task_contributors/_old_data/andrew_benz/index.qmd deleted file mode 100644 index 3d2aee38..00000000 --- a/team/task_contributors/_old_data/andrew_benz/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Andrew Benz -image: https://www.github.com/andrew-benz.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/andrew-benz - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0009-0002-8118-1861 ---- - diff --git a/team/task_contributors/_old_data/artur_szaata/index.qmd b/team/task_contributors/_old_data/artur_szaata/index.qmd deleted file mode 100644 index f0fa8917..00000000 --- a/team/task_contributors/_old_data/artur_szaata/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Artur Szałata -image: https://www.github.com/szalata.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/szalata - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/000-0001-8413-234X ---- - diff --git a/team/task_contributors/_old_data/bastian_rieck/index.qmd b/team/task_contributors/_old_data/bastian_rieck/index.qmd deleted file mode 100644 index c706d0e3..00000000 --- a/team/task_contributors/_old_data/bastian_rieck/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Bastian Rieck -image: https://www.github.com/Pseudomanifold.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/Pseudomanifold ---- - diff --git a/team/task_contributors/_old_data/ben_demeo/index.qmd b/team/task_contributors/_old_data/ben_demeo/index.qmd deleted file mode 100644 index 371d2f04..00000000 --- a/team/task_contributors/_old_data/ben_demeo/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Ben DeMeo -image: https://www.github.com/bendemeo.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/bendemeo ---- - diff --git a/team/task_contributors/_old_data/daniel_strobl/index.qmd b/team/task_contributors/_old_data/daniel_strobl/index.qmd deleted file mode 100644 index 0df75cd0..00000000 --- a/team/task_contributors/_old_data/daniel_strobl/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Daniel Strobl -image: https://www.github.com/danielStrobl.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/danielStrobl ---- - diff --git a/team/task_contributors/_old_data/dongyuan_song/index.qmd b/team/task_contributors/_old_data/dongyuan_song/index.qmd deleted file mode 100644 index 5b3dea92..00000000 --- a/team/task_contributors/_old_data/dongyuan_song/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Dongyuan Song -image: https://www.github.com/SONGDONGYUAN1994.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/SONGDONGYUAN1994 ---- - diff --git a/team/task_contributors/_old_data/giovanni_palla/index.qmd b/team/task_contributors/_old_data/giovanni_palla/index.qmd deleted file mode 100644 index f16d4ba8..00000000 --- a/team/task_contributors/_old_data/giovanni_palla/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Giovanni Palla -image: https://www.github.com/giovp.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/giovp ---- - diff --git a/team/task_contributors/_old_data/guanao_yan/index.qmd b/team/task_contributors/_old_data/guanao_yan/index.qmd deleted file mode 100644 index 59fcb71e..00000000 --- a/team/task_contributors/_old_data/guanao_yan/index.qmd +++ /dev/null @@ -1,9 +0,0 @@ ---- -title: Guanao Yan -image: /images/avatar.svg -role: Task Contributor -about: - template: jolla - links: [] ---- - diff --git a/team/task_contributors/_old_data/jalil_nourisa/index.qmd b/team/task_contributors/_old_data/jalil_nourisa/index.qmd deleted file mode 100644 index 2a0509b7..00000000 --- a/team/task_contributors/_old_data/jalil_nourisa/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Jalil Nourisa -image: https://www.github.com/janursa.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/janursa - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-7539-4396 ---- - diff --git a/team/task_contributors/_old_data/jingyi_jessica_li/index.qmd b/team/task_contributors/_old_data/jingyi_jessica_li/index.qmd deleted file mode 100644 index 82a5d311..00000000 --- a/team/task_contributors/_old_data/jingyi_jessica_li/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Jingyi Jessica Li -image: https://www.github.com/JSB-UCLA.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/JSB-UCLA ---- - diff --git a/team/task_contributors/_old_data/jiwei_liu/index.qmd b/team/task_contributors/_old_data/jiwei_liu/index.qmd deleted file mode 100644 index 43578a8f..00000000 --- a/team/task_contributors/_old_data/jiwei_liu/index.qmd +++ /dev/null @@ -1,18 +0,0 @@ ---- -title: Jiwei Liu -image: https://www.github.com/daxiongshu.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/daxiongshu - - icon: bi-envelope - text: E-mail - href: mailto:jiweil@nvidia.com - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-8799-9763 ---- - diff --git a/team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd b/team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd deleted file mode 100644 index 90c48a45..00000000 --- a/team/task_contributors/_old_data/juan_a_cordero_varela/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Juan A. Cordero Varela -image: https://www.github.com/jacorvar.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/jacorvar - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-7373-5433 ---- - diff --git a/team/task_contributors/_old_data/kai_waldrant/index.qmd b/team/task_contributors/_old_data/kai_waldrant/index.qmd deleted file mode 100644 index 5d9a888a..00000000 --- a/team/task_contributors/_old_data/kai_waldrant/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Kai Waldrant -image: https://www.github.com/KaiWaldrant.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/KaiWaldrant - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0009-0003-8555-1361 ---- - diff --git a/team/task_contributors/_old_data/kaiwen_deng/index.qmd b/team/task_contributors/_old_data/kaiwen_deng/index.qmd deleted file mode 100644 index 1d3fff28..00000000 --- a/team/task_contributors/_old_data/kaiwen_deng/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Kaiwen Deng -image: https://www.github.com/nonztalk.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-envelope - text: E-mail - href: mailto:dengkw@umich.edu - - icon: bi-github - text: GitHub - href: https://github.com/nonztalk ---- - diff --git a/team/task_contributors/_old_data/louise_deconinck/index.qmd b/team/task_contributors/_old_data/louise_deconinck/index.qmd deleted file mode 100644 index 2441d0b7..00000000 --- a/team/task_contributors/_old_data/louise_deconinck/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Louise Deconinck -image: https://www.github.com/LouiseDck.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/LouiseDck ---- - diff --git a/team/task_contributors/_old_data/luca_pinello/index.qmd b/team/task_contributors/_old_data/luca_pinello/index.qmd deleted file mode 100644 index b6d55be2..00000000 --- a/team/task_contributors/_old_data/luca_pinello/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Luca Pinello -image: https://www.github.com/pinellolab.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/pinellolab ---- - diff --git a/team/task_contributors/_old_data/luke_zappia/index.qmd b/team/task_contributors/_old_data/luke_zappia/index.qmd deleted file mode 100644 index 78a0123e..00000000 --- a/team/task_contributors/_old_data/luke_zappia/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Luke Zappia -image: https://www.github.com/lazappi.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/lazappi ---- - diff --git a/team/task_contributors/_old_data/mengbo_wang/index.qmd b/team/task_contributors/_old_data/mengbo_wang/index.qmd deleted file mode 100644 index ba4f8fc6..00000000 --- a/team/task_contributors/_old_data/mengbo_wang/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Mengbo Wang -image: https://www.github.com/wangmengbo.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/wangmengbo - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-0266-9993 ---- - diff --git a/team/task_contributors/_old_data/michaela_mueller/index.qmd b/team/task_contributors/_old_data/michaela_mueller/index.qmd deleted file mode 100644 index c0c0496c..00000000 --- a/team/task_contributors/_old_data/michaela_mueller/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Michaela Mueller -image: https://www.github.com/mumichae.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/mumichae ---- - diff --git a/team/task_contributors/_old_data/michal_klein/index.qmd b/team/task_contributors/_old_data/michal_klein/index.qmd deleted file mode 100644 index 154e78fe..00000000 --- a/team/task_contributors/_old_data/michal_klein/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Michal Klein -image: https://www.github.com/michalk8.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/michalk8 ---- - diff --git a/team/task_contributors/_old_data/nikolay_markov/index.qmd b/team/task_contributors/_old_data/nikolay_markov/index.qmd deleted file mode 100644 index 4baaa9f8..00000000 --- a/team/task_contributors/_old_data/nikolay_markov/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Nikolay Markov -image: https://www.github.com/mxposed.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/mxposed ---- - diff --git a/team/task_contributors/_old_data/rico_meinl/index.qmd b/team/task_contributors/_old_data/rico_meinl/index.qmd deleted file mode 100644 index e4fbc3e9..00000000 --- a/team/task_contributors/_old_data/rico_meinl/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Rico Meinl -image: https://www.github.com/ricomnl.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/ricomnl - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0003-4356-6058 ---- - diff --git a/team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd b/team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd deleted file mode 100644 index f7c49640..00000000 --- a/team/task_contributors/_old_data/sai_nirmayi_yasa/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Sai Nirmayi Yasa -image: https://www.github.com/sainirmayi.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/sainirmayi - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0009-0003-6319-9803 ---- - diff --git a/team/task_contributors/_old_data/tianyu_liu/index.qmd b/team/task_contributors/_old_data/tianyu_liu/index.qmd deleted file mode 100644 index 7e407384..00000000 --- a/team/task_contributors/_old_data/tianyu_liu/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Tianyu Liu -image: https://www.github.com/HelloWorldLTY.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/HelloWorldLTY - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-9412-6573 ---- - diff --git a/team/task_contributors/_old_data/tin_m_tunjic/index.qmd b/team/task_contributors/_old_data/tin_m_tunjic/index.qmd deleted file mode 100644 index c4d9c05c..00000000 --- a/team/task_contributors/_old_data/tin_m_tunjic/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Tin M. Tunjic -image: https://www.github.com/ttunja.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/ttunja - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0001-8842-6548 ---- - diff --git a/team/task_contributors/_old_data/wesley_lewis/index.qmd b/team/task_contributors/_old_data/wesley_lewis/index.qmd deleted file mode 100644 index ce2b2834..00000000 --- a/team/task_contributors/_old_data/wesley_lewis/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Wesley Lewis -image: https://www.github.com/wes-lewis.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/wes-lewis ---- - diff --git a/team/task_contributors/_old_data/xueer_chen/index.qmd b/team/task_contributors/_old_data/xueer_chen/index.qmd deleted file mode 100644 index 36a9df3e..00000000 --- a/team/task_contributors/_old_data/xueer_chen/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Xueer Chen -image: https://www.github.com/xuerchen.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/xuerchen - - icon: bi-envelope - text: E-mail - href: mailto:xc2579@columbia.edu ---- - diff --git a/team/task_contributors/_old_data/zain_m_patel/index.qmd b/team/task_contributors/_old_data/zain_m_patel/index.qmd deleted file mode 100644 index 7c27c042..00000000 --- a/team/task_contributors/_old_data/zain_m_patel/index.qmd +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Zain M. Patel -image: https://www.github.com/doczmp.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/doczmp ---- - diff --git a/team/task_contributors/_old_data/zhijian_li/index.qmd b/team/task_contributors/_old_data/zhijian_li/index.qmd deleted file mode 100644 index 5c1bdae1..00000000 --- a/team/task_contributors/_old_data/zhijian_li/index.qmd +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Zhijian Li -image: https://www.github.com/lzj1769.png -role: Task Contributor -about: - template: jolla - links: - - icon: bi-github - text: GitHub - href: https://github.com/lzj1769 - - icon: fa-brands fa-orcid - text: ORCID - href: https://orcid.org/0000-0002-1523-1333 ---- - From 1b509a8a2cb69376f534d4a2a0caaea3bc884600 Mon Sep 17 00:00:00 2001 From: Kai Waldrant Date: Mon, 25 Nov 2024 16:29:40 +0100 Subject: [PATCH 7/7] Add missing authors from PRs --- team/_rerender_contributors.R | 8 +++++++- team/index.qmd | 2 +- .../michael_vinyard/index.qmd | 12 ++++++++++++ .../spatial_decomposition/alma_andersson/index.qmd | 12 ++++++++++++ .../spatial_decomposition/can_ergen/index.qmd | 12 ++++++++++++ .../spatial_decomposition/hirak_sarkar/index.qmd | 12 ++++++++++++ .../vitalii_kleshchevnikov/index.qmd | 12 ++++++++++++ 7 files changed, 68 insertions(+), 2 deletions(-) create mode 100644 team/task_contributors/dimensionality_reduction/michael_vinyard/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/alma_andersson/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/can_ergen/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/hirak_sarkar/index.qmd create mode 100644 team/task_contributors/spatial_decomposition/vitalii_kleshchevnikov/index.qmd diff --git a/team/_rerender_contributors.R b/team/_rerender_contributors.R index 4b7987d1..bb3b4fbc 100644 --- a/team/_rerender_contributors.R +++ b/team/_rerender_contributors.R @@ -25,7 +25,13 @@ cache_repository <- function(repo) { zzz <- processx::run("git", c("fetch", "--all"), wd = repo_dir) # reset the repository to the latest commit - zzz <- processx::run("git", c("pull", "origin", "main"), wd = repo_dir) + if (repo == "openproblems-bio/task_spatial_decomposition") { + zzz <- processx::run("git", c("pull", "origin", "add-missing-authors"), wd = repo_dir) + } else if (repo == "openproblems-bio/task_dimensionality_reduction") { + zzz <- processx::run("git", c("pull", "origin", "add_author"), wd = repo_dir) + } else { + zzz <- processx::run("git", c("pull", "origin", "main"), wd = repo_dir) + } # return the path to the repository return(repo_dir) diff --git a/team/index.qmd b/team/index.qmd index 8714946d..63cacc6a 100644 --- a/team/index.qmd +++ b/team/index.qmd @@ -117,4 +117,4 @@ css: team.css ### Spatially Variable Genes :::{#spatially_variable_genes} -::: \ No newline at end of file +::: diff --git a/team/task_contributors/dimensionality_reduction/michael_vinyard/index.qmd b/team/task_contributors/dimensionality_reduction/michael_vinyard/index.qmd new file mode 100644 index 00000000..29c5f27d --- /dev/null +++ b/team/task_contributors/dimensionality_reduction/michael_vinyard/index.qmd @@ -0,0 +1,12 @@ +--- +title: Michael Vinyard +image: https://www.github.com/mvinyard.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/mvinyard +--- + diff --git a/team/task_contributors/spatial_decomposition/alma_andersson/index.qmd b/team/task_contributors/spatial_decomposition/alma_andersson/index.qmd new file mode 100644 index 00000000..e554b1e6 --- /dev/null +++ b/team/task_contributors/spatial_decomposition/alma_andersson/index.qmd @@ -0,0 +1,12 @@ +--- +title: Alma Andersson +image: https://www.github.com/almaan.png +role: Author, Maintainer +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/almaan +--- + diff --git a/team/task_contributors/spatial_decomposition/can_ergen/index.qmd b/team/task_contributors/spatial_decomposition/can_ergen/index.qmd new file mode 100644 index 00000000..825a2527 --- /dev/null +++ b/team/task_contributors/spatial_decomposition/can_ergen/index.qmd @@ -0,0 +1,12 @@ +--- +title: Can Ergen +image: https://www.github.com/canergen.png +role: Contributor +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/canergen +--- + diff --git a/team/task_contributors/spatial_decomposition/hirak_sarkar/index.qmd b/team/task_contributors/spatial_decomposition/hirak_sarkar/index.qmd new file mode 100644 index 00000000..08e0ea4a --- /dev/null +++ b/team/task_contributors/spatial_decomposition/hirak_sarkar/index.qmd @@ -0,0 +1,12 @@ +--- +title: Hirak Sarkar +image: https://www.github.com/hiraksarkar.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/hiraksarkar +--- + diff --git a/team/task_contributors/spatial_decomposition/vitalii_kleshchevnikov/index.qmd b/team/task_contributors/spatial_decomposition/vitalii_kleshchevnikov/index.qmd new file mode 100644 index 00000000..6c62aac2 --- /dev/null +++ b/team/task_contributors/spatial_decomposition/vitalii_kleshchevnikov/index.qmd @@ -0,0 +1,12 @@ +--- +title: Vitalii Kleshchevnikov +image: https://www.github.com/vitkl.png +role: Author +about: + template: jolla + links: + - icon: bi-github + text: GitHub + href: https://github.com/vitkl +--- +