Repositories list

• TangentXY

  Public
  An extension of the Tangent method that allows for improved normalization of the sex chromosomes.

  R

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• GaTSV

  Public
  R

  •

  GNU General Public License v2.0

  •0•2•0•0•Updated Aug 7, 2024Aug 7, 2024

• SVsig

  Public
  drivers2dstructural-variation

  MATLAB

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Jul 22, 2024Jul 22, 2024

• TangentXY_scripts

  Public
  R

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• gatk4-data-processing

  Public
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •76•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• BISCUT-py3

  Public
  Python

  •5•10•3•1•Updated Apr 25, 2024Apr 25, 2024

• ancestry_manuscript_code

  Public
  Jupyter Notebook

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• gistic_reference

  Public
  MATLAB

  •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• ascets

  Public
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

  cnvtargeted-sequencing

  R

  •

  GNU General Public License v2.0

  •1•14•0•0•Updated Jan 31, 2024Jan 31, 2024

• ccnu_prism

  Public
  Repository for all of the analysis for the CCNU project

  0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

• AlkylatingAgentResistanceAnalysis

  Public
  R

  •1•0•0•0•Updated Mar 11, 2022Mar 11, 2022

• GATK_CN_CWL

  Public
  Implementation of the GATK copy number pipeline in CWL (ported from WDL)

  gatkwdlgdc+ 2cwlcnv

  Common Workflow Language

  •1•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• oncoprint-template

  Public
  Template Code for OncoPrint

  graphicsoncopanel

  R

  •0•0•0•0•Updated Oct 26, 2020Oct 26, 2020