Open Problems in Single-Cell Analysis

Type: All

Visibility: All

Sort by: Most downloads

Clear current search query, filters, and sorts

30 packages

data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_run

2.84k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet

2.65k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/clustering_overlap

2.51k
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/transform

2.48k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_f1

2.46k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_label

2.28k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_asw

2.28k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/lisi

2.23k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/graph_connectivity

2.21k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_batch

2.16k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/pcr

2.15k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/cell_cycle_conservation

2.1k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/hvg_overlap

927
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_merge

782
methods/mnnpy
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/mnnpy

306
methods/batchelor_mnn_correct
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_mnn_correct

285
methods/scanorama
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanorama

250
methods/pyliger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/pyliger

244
control_methods/shuffle_integration_by_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_batch

221
control_methods/shuffle_integration_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_cell_type

220
methods/liger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/liger

217
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration

216
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/combat

209
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_fastmnn

209
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/embed_cell_types_jittered

204
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration

204
methods/scalex
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scalex

199
control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration_batch

198
methods/harmonypy
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/harmonypy

197
methods/scanvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanvi

194