Please make a release

[subwaystation]

Hi @ekg ,

following up the discussion at pangenome/spodgi#3, could you please make a release or pre-release of odgi?
Thanks!

Best,
Simon

[SilasK]

Could I also ask for a docker container

[subwaystation]

As soon as we have a release, we can bring it to Conda. Then a docker container will be straightforward.

[SilasK]

Conda is even better!

[SilasK]

@ekg maybe it's not the place to ask.
How complicated would it be to make a conda package for Seqwish ?

[ekg]

I've never made a conda package. I don't know. It shouldn't be any more complicated than odgi.

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On Fri, Nov 8, 2019 at 10:41 AM Silas Kieser ***@***.***> wrote: @ekg <https://github.com/ekg> maybe it's not the place to ask. How complicated would it be to make a conda package for Seqwish ? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#55>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQELNDWANQDOXNRS24HDQSUX5NANCNFSM4JD7XB5A> .

[subwaystation]

@ekg As mentioned in pangenome/spodgi#3 @apeltzer and @subwaystation will package it in conda ;)

[SilasK]

Ok, then we would need a release from Seqwish as well. I can help to make the conda package. Could you ping the PR on bioconda/bioconda for odgi?

[ekg]

I've made a seqwish release https://github.com/ekg/seqwish/releases/tag/v0.1

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On Fri, Nov 8, 2019 at 1:10 PM Silas Kieser ***@***.***> wrote: Ok, then we would need a release from Seqwish as well. I can help to make the conda package. Could you ping the PR on bioconda/bioconda for odgi? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#55>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQEL3MXNWFUFYRHMTDNTQSVJKTANCNFSM4JD7XB5A> .

[SilasK]

As mentioned in pangenome/spodgi#3 @apeltzer and @subwaystation will package it in conda ;)

@apeltzer and @subwaystation have you still intention in doing so?

[subwaystation]

I don't know about @apeltzer, but I still have the intention.
Apparently, a lot of things were alredy tried out. See bioconda/bioconda-recipes#18743. But I do not have any experience with CMAKE, so I don't know what to do.
@ekg Do you have any idea?

[ekg]

I've been able to build odgi with guix. Is there a way to work from this recipe? https://github.com/ekg/guix-genomics/blob/master/odgi.scm

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On Thu, Jan 30, 2020 at 10:44 AM Simon Heumos ***@***.***> wrote: I don't know about @apeltzer <https://github.com/apeltzer>, but I still have the intention. Apparently, a lot of things were alredy tried out. See bioconda/bioconda-recipes#18743 <bioconda/bioconda-recipes#18743>. But I do not have any experience with CMAKE, so I don't know what to do. @ekg <https://github.com/ekg> Do you have any idea? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#55>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQEP2CHVJJDUXWFDCEI3RAKOQTANCNFSM4JD7XB5A> .

[subwaystation]

@SilasK please take a look at #75 for further updates.