diff --git a/.github/workflows/build_and_test_docker.yml b/.github/workflows/build_and_test_docker.yml index 0bf32cb..5462e42 100644 --- a/.github/workflows/build_and_test_docker.yml +++ b/.github/workflows/build_and_test_docker.yml @@ -10,4 +10,4 @@ jobs: - name: Build the Docker image run: docker build . --file Dockerfile --tag pgge - name: Run a test on the DRB1-3123 dataset - run: docker run -it -v ${PWD}/data/:/data pgge "pgge -g "/data/HLA/DRB1-3123/*.consensus*.gfa" -f /data/HLA/DRB1-3123/DRB1-3123.fa -r /scripts/beehave.R -t 2 -o /data/HLA/DRB1-3123/pgge_docker -l 1000 -s 1000 -p 100" + run: docker run -v ${PWD}/data/:/data pgge "pgge -g "/data/HLA/DRB1-3123/*.consensus*.gfa" -f /data/HLA/DRB1-3123/DRB1-3123.fa -r /scripts/beehave.R -t 2 -o /data/HLA/DRB1-3123/pgge_docker -l 1000 -s 1000 -p 100"