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Check gene list against HGNC api #15

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pasted opened this issue Jun 30, 2017 · 3 comments
Open

Check gene list against HGNC api #15

pasted opened this issue Jun 30, 2017 · 3 comments

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@pasted
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pasted commented Jun 30, 2017

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@pasted
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pasted commented Jul 24, 2017

http://rest.genenames.org/search/symbol/
Return JSON and initially only parse a true for exact gene symbol match or false. Lots of additional information available however such as protein family, long descriptions etc.

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pasted commented Jul 24, 2017

response body inc the following -
-- hgnc_id "HGNC:1097"
-- symbol "BRAF"
-- score "10.306656"

Take highest scoring match only and check whether exact match for given gene symbol if so return true else false.

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pasted commented Jul 24, 2017

Change the return type to either an empty LazySeq or a LazySeq with the top hit only

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