Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Query Biomart with genelist and return list of genomic coordinates #20

Open
pasted opened this issue Jul 25, 2017 · 0 comments
Open

Query Biomart with genelist and return list of genomic coordinates #20

pasted opened this issue Jul 25, 2017 · 0 comments

Comments

@pasted
Copy link
Owner

pasted commented Jul 25, 2017

Write functions to retrieve genomic coordinates for all transcripts from Biomart for the reference given in the VCF header. Possibly have to parse HG19 / GRChv37 and 38 - also return the ensembl ids for the transcript and genes; have to check these for the biologically active variant as annotated by CellBase?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant