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Copy pathantibody_antigen_cases.txt
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antibody_antigen_cases.txt
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Complex PDB Antibody PDB Antibody Antigen PDB Antigen I-RMSD (Å) ΔASA (Å2) Category New
1S78_DC:A 1L7I_HL pertuzumab (Perjeta) 2A91_A ErbB2 1.13 2175.1 Rigid X
3MJ9_HL:A 3MJ8_HL HL4E10 3MJ6_A JAML 1.48 2456.6 Rigid X
3SE8_HL:G 5JXA_HL VRC03 3TGT_A HIV 93TH057 gp120 1.22 2690.3 Rigid X
3U7Y_HL:G 3U7W_HL NIH45-46 3TGT_A HIV 93TH057 gp120 0.84 2543.9 Rigid X
3WD5_HL:ABC 4NYL_HL adalimumab (Humira) 1TNF_ABC TNFalpha 0.93 2328.2 Rigid X
4FP8_HL:A 4FNL_HL C05 4FNK_ABCDEF influenza H3 HA 0.34 1321.5 Rigid X
4M5Z_HL:A 4M5Y_HL 5J8 3UYX_A influenza H1N1 HA1 0.73 1591.1 Rigid X
4Y7M_A:C 4QGY_A nb25 4Y7L_A E coli TssM CTD 0.84 1102.5 Rigid X
5GRJ_HL:A 4NKI_HL avelumab scFv (Bavencio) 4Z18_A PD-L1 1.14 1752.5 Rigid X
5JMO_D:B 5JMR_A Nb14 5JXI_A Furin 0.29 1393.9 Rigid X
5O14_HL:A 5UR8_AB 1A12 3KVD_D Neisseria meningitidis fHbp 0.63 1523.7 Rigid X
5O1R_HL:A 5NYX_HL 5H2 6CUJ_A Neisseria meningitidis NHBA 0.9 1851.9 Rigid X
5SV3_C:D 5SV4_A A3C8 1IFT_A Ricin 0.57 1293.6 Rigid X
5WK3_WV:D 5WK2_HL M116 1NR4_A CCL17 0.57 1222.3 Rigid X
5WUX_HL:EFG 5WUV_HL certolizumab (Cimzia) 1TNF_CBA TNFalpha 0.8 2072.8 Rigid X
5X0T_AB:E 5X4G_AB 6H8 3B5H_A CD147 1.25 1316.2 Rigid X
5Y9J_HL:ABC 5Y9K_HL belimumab (Benlysta) 1KXG_ABC B lymphocyte stimulator 0.96 1976.3 Rigid X
6A77_HL:A 6A76_HL B5209B 5O5I_A ROBO1 Ig5 0.95 1532.8 Rigid X
6B0S_HL:C 6B0W_HL 1710 Fab fragment 3VDJ_A circumsporozoite protein aTSR domain 0.72 1353.2 Rigid X
6BPC_EF:D 6BPB_AB 4F7 5W53_A Plasmodium vivax reticulocyte-binding protein 2b 0.47 1644.5 Rigid X
6CWG_B:A 6CWK_A A9 1IFT_A Ricin 0.76 1151.2 Rigid X
6DBG_C:B 6DBA_A R303 1H6T_A Listeria monocytogenes internalin B 0.46 1525.2 Rigid X
6OC3_AB:F 6OBZ_HL FluA-20 6CHX_A H1 hemagglutinin head 0.59 1536.9 Rigid X
1AHW_AB:C 1FGN_LH Fab 5g9 1TFH_A Tissue factor 0.69 1899 Rigid
1DQJ_AB:C 1DQQ_CD Fab Hyhel63 3LZT_ HEW lysozyme 0.75 1765 Rigid
1E6J_HL:P 1E6O_HL Fab 1A43_ HIV-1 capsid protein p24 1.05 1245 Rigid
1JPS_HL:T 1JPT_HL Fab D3H44 1TFH_B Tissue factor 0.51 1852 Rigid
1MLC_AB:E 1MLB_AB Fab44.1 3LZT_ HEW lysozyme 0.6 1392 Rigid
1VFB_AB:C 1VFA_AB Fv D1.3 8LYZ_ HEW lysozyme 1.02 1383 Rigid
1WEJ_HL:F 1QBL_HL Fab E8 1HRC_ Cytochrome C 0.31 1177 Rigid
2FD6_HL:U 2FAT_HL Plasminogen receptor antibody 1YWH_A Plasminogen activator receptor 1.07 1139 Rigid
2I25_N:L 2I24_N Shark single domain antigen receptor 3LZT Lysozyme 1.21 1425 Rigid
2VIS_AB:C 1GIG_LH Fab 2VIU_ACE Flu virus hemagglutinin 0.8 1296 Rigid
2VXT_HL:I 2VXU_HL Murine reference antibody 125-2H FAB 1J0S_A(6) Interleukin-18 1.32 2163 Rigid
2W9E_HL:A 2W9D_HL ICSM 18 FAB fragment 1QM1_A Prion protein fragment 1.13 1677 Rigid
3EOA_LH:I 3EO9_LH Efalizumab FAB fragment 3F74_A Integrin alpha-L I domain 0.39 1272 Rigid
3HMX_LH:AB 3HMW_LH Ustekinumab FAB 1F45_AB Interleukin-12 0.73 1841 Rigid
3MXW_LH:A 3MXV_LH Anti-Shh 5E1 chimera FAB fragment 3M1N_A Sonic Hedgehog N-terminal domain 0.48 1696 Rigid
3RVW_CD:A 3RVT_CD 4C1 FAB 3F5V_A DER P 1 allergen 0.5 1383 Rigid
4DN4_LH:M 4DN3_LH CNTO888 FAB 1DOL_A MCP-1 0.81 1317 Rigid
4FQI_HL:ABEFCD 4FQH_HL CR9114 FAB 2FK0_ABCDEF H5N1 influenza virus hemagglutinin 1.08 1459 Rigid
4G6J_HL:A 4G5Z_HL Canakinumab antibody fragment 4I1B_A Interleukin-1 beta 0.61 1893 Rigid
4G6M_HL:A 4G6K_HL Gevokizumab antibody fragment 4I1B_A Interleukin-1 beta 0.52 1673 Rigid
4GXU_MN:ABEFCD 4GXV_HL 1F1 antibody 1RUZ_HIJKLM 1918 H1 Hemagglutinin 0.78 1830 Rigid
2DD8_HL:S 2G75_AB m396 2GHV_E SARS spike 2.19 1709.7 Medium X
3RJQ_B:A 3R0M_A A12 3TGR_A C1086 HIV gp120 0.79 1734.4 Medium X
4ETQ_HL:C 4EBQ_HL LA5 4E9O_X vaccinia D8L IMV 0.47 2277.9 Medium X
4M3K_B:A 4M3J_A cAb-H7S 4BLM_A B. licheniformis beta-lactamase 1.77 1588 Medium X
4POU_B:A 4POY_A VHHmetal 6ETL_A bovine RNase A 1.83 1313.3 Medium X
5CBA_AB:E 5C2B_HL 3B4 scFv 4ZAI_A CXCL13 1.49 1790.2 Medium X
5E5M_B:A 5E03_A H11 5E56_A mouse CTLA-4 1.56 1341.4 Medium X
5HGG_T:A 5HDO_A Nb4 4FUD_A uPA 0.84 1969 Medium X
5HYS_CD:JK 2XA8_HL omalizumab (Xolair) 4GT7_AB IgE-Fc3-4 1 1331.6 Medium X
5KOV_C:AB 5I30_HL PL-2 scFv 5KOU_AB astrovirus 2 capsid protein spike domain 1.69 1735 Medium X
5VNW_D:A 5VNV_A Nb.b201 1E78_A human serum albumin 1.49 966.8 Medium X
5WHK_HL:AB 5WHJ_HL DX-2507 5BXF_AB FcRn-B2M 1.88 1849.6 Medium X
6A0Z_HL:A 6A0X_AB 13D4 2FK0_A H5N1 hemagglutinin head 1.28 1660.7 Medium X
6AL0_HL:A 4YNY_AB NZ-1 6AKQ_A A. aeolicus site-2 protease homolog with PA tag insertion 1.89 1622.8 Medium X
6EY6_I:AB 5FWO_A nb130 6EY5_AB P. gingivalis PorM 1.9 1806.8 Medium X
3EO1_AB:CF 3EO0_AB GC-1008 FAB fragment 1TGJ_AB Transforming Growth Factor-Beta 3 1.37 1630 Medium
3G6D_LH:A 3G6A_LH CNTO607 FAB 1IK0_A(10) Interleukin-13 1.86 1793 Medium
3HI6_XY:B 3HI5_HL AL-57 FAB fragment 1MJN_A Integrin alpha-L I domain 1.65 1871 Medium
3L5W_LH:I 3L7E_LH C836 FAB 1IK0_A(11) Interleukin-13 0.48 1138 Medium
3V6Z_AB:F 3V6F_AB FAB E6 3KXS_F Capsid protein assembly domain 1.82 1922 Medium
2FJG_HL:VW 2FJF_HL G6 4KZN_AB VEGF 2.51 1678.2 Difficult X
4DW2_HL:U 4DVB_AB mAb-112 4DVA_U uPA 2.27 2037.6 Difficult X
5C7X_HL:A 5D7S_HL MOR04357 2GMF_A GM-CSF 2.31 2523.3 Difficult X