From 2a5bd2fc3a4efbbe6bffec223165bec4adea1499 Mon Sep 17 00:00:00 2001 From: pirovc <4673375+pirovc@users.noreply.github.com> Date: Thu, 21 Jul 2022 15:27:12 +0200 Subject: [PATCH] GRIMER v1.0.0 (#3) * v1.0.0 * metadata code, sorted panels user * fix small typos, print md * updated external reference files * fix * option to input table with commulative values * check md data length, fix typos, env decv * update readme --- README.md | 102 +- config/default.yaml | 2 +- env.yaml | 7 +- files/README.md | 82 +- files/human-related.yml | 57 +- files/{mgnify.tsv => mgnify5989.tsv} | 11949 ++++++++++++++----------- grimer/config.py | 9 +- grimer/func.py | 108 +- grimer/grimer.py | 6 +- grimer/layout.py | 22 +- grimer/metadata.py | 74 +- grimer/plots.py | 2 +- scripts/bacdive_download.py | 20 +- scripts/ehomd_download.py | 2 +- scripts/env.yaml | 8 + scripts/mgnify_download.py | 6 +- setup.py | 2 +- 17 files changed, 7233 insertions(+), 5225 deletions(-) rename files/{mgnify.tsv => mgnify5989.tsv} (96%) create mode 100644 scripts/env.yaml diff --git a/README.md b/README.md index 5c7e69a..df0f592 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ ![GRIMER](grimer/img/logo.png) -GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata. +GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection. More information about the method can be found in the [pre-print](https://doi.org/10.1101/2021.06.22.449360) ## Examples @@ -10,15 +10,22 @@ Online examples of reports generated with GRIMER: https://pirovc.github.io/grime ## Installation +Via conda + +```bash +conda install -c bioconda -c conda-forge grimer +``` + +or locally installing only dependencies via conda: + ```bash git clone https://github.com/pirovc/grimer.git cd grimer -conda env create -f env.yaml -conda activate grimer # source activate grimer +conda env create -f env.yaml # or mamba env create -f env.yaml +conda activate grimer # or source activate grimer python setup.py install --record files.txt # Uninstall: xargs rm -rf < files.txt grimer -h ``` -***Soon GRIMER will be available as a package in BioConda.*** ## Usage @@ -52,11 +59,94 @@ grimer -i input_table.tsv -m metadata.tsv -t ncbi #optional -b taxdump.tar.gz grimer -i input_table.tsv -m metadata.tsv -t ncbi -c config/default.yaml -d -g ``` -### List all options +### Analyzing any MGnify public study + ```bash -grimer -h +./grimer-mgnify.py -i MGYS00006024 -o output_folder/ ``` +## Parameters + + grimer + + optional arguments: + -h, --help show this help message and exit + -v, --version show program's version number and exit + + required arguments: + -i INPUT_FILE, --input-file INPUT_FILE + Main input table with counts (Observation table, Count table, Contingency Tables, ...) or .biom file. By default rows contain observations and columns contain + samples (use --tranpose if your file is reversed). First column and first row are used as headers. + + main arguments: + -m METADATA_FILE, --metadata-file METADATA_FILE + Input metadata file in simple tabular format with samples in rows and metadata fields in columns. QIIME 2 metadata format is also accepted, with an extra row to + define categorical and numerical fields. If not provided and --input-file is a .biom files, will attempt to get metadata from it. + -t {ncbi,gtdb,silva,greengenes,ott}, --taxonomy {ncbi,gtdb,silva,greengenes,ott} + Define taxonomy to convert entry and annotate samples. Will automatically download and parse or files can be provided with --tax-files. + -b [TAX_FILES ...], --tax-files [TAX_FILES ...] + Optional specific taxonomy files to use. + -r [RANKS ...], --ranks [RANKS ...] + Taxonomic ranks to generate visualizations. Use 'default' to use entries from the table directly. Default: default + -c CONFIG, --config CONFIG + Configuration file with definitions of references, controls and external tools. + + output arguments: + -g, --mgnify Plot MGnify chart + -d, --decontam Run and plot DECONTAM + -l TITLE, --title TITLE + Title to display on the header of the report. + -p [{overview,samples,heatmap,correlation} ...], --output-plots [{overview,samples,heatmap,correlation} ...] + Plots to generate. Default: overview,samples,heatmap,correlation + -o OUTPUT_HTML, --output-html OUTPUT_HTML + File to output report. Default: output.html + --full-offline Embed javascript library in the output file. File will be around 1.5MB bigger but also work without internet connection. That way your report will live forever. + + general data options: + -f LEVEL_SEPARATOR, --level-separator LEVEL_SEPARATOR + If provided, consider --input-table to be a hierarchical multi-level table where the observations headers are separated by the indicated separator characther + (usually ';' or '|') + -y VALUES, --values VALUES + Force 'count' or 'normalized' data parsing. Empty to auto-detect. + -w, --cumm-levels Activate if input table has already cummulative values among levels. + -s, --transpose Transpose --input-table (if samples are listed on columns and observations on rows) + -u [UNASSIGNED_HEADER ...], --unassigned-header [UNASSIGNED_HEADER ...] + Define one or more header names containing unsassinged/unclassified counts. + --obs-replace [OBS_REPLACE ...] + Replace values on table observations labels/headers (support regex). Example: '_' ' ' will replace underscore with spaces, '^.+__' '' will remove the matching + regex. + --sample-replace [SAMPLE_REPLACE ...] + Replace values on table sample labels/headers (support regex). Example: '_' ' ' will replace underscore with spaces, '^.+__' '' will remove the matching regex. + -z REPLACE_ZEROS, --replace-zeros REPLACE_ZEROS + INT (add 'smallest count'/INT to every raw count), FLOAT (add FLOAT to every raw count). Default: 1000 + --min-frequency MIN_FREQUENCY + Define minimum number/percentage of samples containing an observation to keep the observation [values between 0-1 for percentage, >1 specific number]. + --max-frequency MAX_FREQUENCY + Define maximum number/percentage of samples containing an observation to keep the observation [values between 0-1 for percentage, >1 specific number]. + --min-count MIN_COUNT + Define minimum number/percentage of counts to keep an observation [values between 0-1 for percentage, >1 specific number]. + --max-count MAX_COUNT + Define maximum number/percentage of counts to keep an observation [values between 0-1 for percentage, >1 specific number]. + + Samples options: + -j TOP_OBS_BARS, --top-obs-bars TOP_OBS_BARS + Top abundant observations to show in the bars. + + Heatmap and clustering options: + -a TRANSFORMATION, --transformation TRANSFORMATION + none (counts), norm (percentage), log (log10), clr (centre log ratio). Default: log + -e METADATA_COLS, --metadata-cols METADATA_COLS + How many metadata cols to show on the heatmap. Higher values makes plot slower to navigate. + --optimal-ordering Activate optimal_ordering on linkage, takes longer for large number of samples. + --show-zeros Do not skip zeros on heatmap. File will be bigger and iteraction with heatmap slower. + --linkage-methods [{single,complete,average,centroid,median,ward,weighted} ...] + --linkage-metrics [{braycurtis,canberra,chebyshev,cityblock,correlation,cosine,dice,euclidean,hamming,jaccard,jensenshannon,kulsinski,mahalanobis,minkowski,rogerstanimoto,russellrao,seuclidean,sokalmichener,sokalsneath,sqeuclidean,wminkowski,yule} ...] + --skip-dendrogram Disable dendogram. Will create smaller files. + + Correlation options: + -x TOP_OBS_CORR, --top-obs-corr TOP_OBS_CORR + Top abundant observations to build the correlationn matrix, based on the avg. percentage counts/sample. 0 for all + ## Powered by [](https://bokeh.org) diff --git a/config/default.yaml b/config/default.yaml index 4d28169..cc8a9d9 100644 --- a/config/default.yaml +++ b/config/default.yaml @@ -7,7 +7,7 @@ references: # "Negative Controls": "path/file1.tsv" external: - mgnify: "files/mgnify.tsv" + mgnify: "files/mgnify5989.tsv" decontam: threshold: 0.1 # [0-1] P* hyperparameter method: "frequency" # frequency, prevalence, combined diff --git a/env.yaml b/env.yaml index 1bdbfaa..6ef7e16 100644 --- a/env.yaml +++ b/env.yaml @@ -9,10 +9,9 @@ dependencies: - numpy - scipy>=1.6.0 - scikit-bio>=0.5.6 - - multitax==1.1.0 + - multitax==1.1.1 - markdown + - biom-format>=2.1.10 - r-base>=4.0.0 #DECONTAM - bioconductor-decontam==1.10.0 #DECONTAM - - r-optparse==1.6.6 #DECONTAM - - biom-format>=2.1.10 #biom - - jsonapi-client>=0.9.7 #mgnify scripts \ No newline at end of file + - r-optparse==1.6.6 #DECONTAM \ No newline at end of file diff --git a/files/README.md b/files/README.md index 5e74fba..3ff9f9f 100644 --- a/files/README.md +++ b/files/README.md @@ -1,4 +1,4 @@ -# GRIMER References and aux. files +# GRIMER References and other files ## Reference file format @@ -27,33 +27,57 @@ references: ### contaminants.yml -Last update: 2021-04-01 +Last update: 2022-03-09 - | Organism group | Genus | Species | - |----------------|-------|---------| - | Bacteria | 6 | 0 | 1998 Tanner, M.A. et al. | - | Bacteria | 4 | 0 | 2003 Grahn, N. et al. | - | Bacteria | 16 | 0 | 2006 Barton, H.A. et al. | - | Bacteria | 11 | 1 | 2014 Laurence, M. et al. | - | Bacteria | 92 | 0 | 2014 Salter, S.J. et al. | - | Bacteria | 7 | 0 | 2015 Jervis-Bardy, J. et al. | +Manually curated from diverse publications: + + | Organism group | Genus | Species | Reference | + |----------------|-------|---------|-----------| + | Bacteria | 6 | 0 | 1998 Tanner, M.A. et al. | + | Bacteria | 0 | 10 | 2002 Kulakov, L.A. et al. | + | Bacteria | 4 | 0 | 2003 Grahn, N. et al. | + | Bacteria | 16 | 0 | 2006 Barton, H.A. et al. | + | Bacteria | 11 | 1 | 2014 Laurence, M. et al.| + | Bacteria | 92 | 0 | 2014 Salter, S.J. et al. | + | Bacteria | 7 | 0 | 2015 Jervis-Bardy, J. et al. | | Bacteria | 28 | 0 | 2015 Jousselin, E. et al. | - | Bacteria | 23 | 0 | 2016 Lauder, A.P. et al. | + | Bacteria | 77 | 127 | 2016 Glassing, A. et al.| + | Bacteria | 23 | 0 | 2016 Lauder, A.P. et al. | | Bacteria | 6 | 0 | 2016 Lazarevic, V. et al. | - | Bacteria | 77 | 127 | 2016 Glassing, A. et al. | - | Bacteria | 62 | 0 | 2017 Salter, S.J. et al. | - | Bacteria | 0 | 122 | 2018 Kirstahler, P. et al. | + | Bacteria | 62 | 0 | 2017 Salter, S.J. et al. | + | Bacteria | 0 | 122 | 2018 Kirstahler, P. et al. | + | Bacteria | 34 | 0 | 2018 Stinson, L.F. et al. | + | Bacteria | 18 | 0 | 2019 Stinson, L.F. et al. | + | Bacteria | 52 | 2 | 2019 Weyrich, L.S. et al. | | Bacteria | 8 | 26 | 2019 de Goffau, M.C. et al. | - | Bacteria | 52 | 2 | 2019 Weyrich, L.S. et al. | - | Bacteria | 15 | 93 | 2020 Nejman D. et al. | - | Viruses | 0 | 1 | 2015 Mukherjee, S. et al. | - | Viruses | 0 | 1 | 2015 Kjartansdóttir, K.R. et al. | - | Viruses | 0 | 301 | 2019 Asplund, M. et al. | - | Total (unique) | 201 | 625 | | + | Bacteria | 15 | 93 | 2020 Nejman D. et al. | + | Viruses | 0 | 1 | 2015 Kjartansdóttir, K.R. et al. | + | Viruses | 0 | 1 | 2015 Mukherjee, S. et al. | + | Viruses | 0 | 291 | 2019 Asplund, M. et al. | + | Eukaryota | 0 | 3 | 2016 Czurda, S. et al. | + | Eukaryota | 0 | 1 | PRJNA168| + | Total (unique) | 210 | 627 | | ### human-related.yml -BacDive and eHOMD dump date: 2021-04-13 +Last update: 2022-03-09 + +Manually curated from from: Byrd, A., Belkaid, Y. & Segre, J. The human skin microbiome. Nat Rev Microbiol 16, 143–155 (2018). https://doi.org/10.1038/nrmicro.2017.157 + +```yaml +"Top organisms form the human skin microbiome": + "Bacteria": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [257758, 225324, 169292, 161879, 146827, 43765, 38304, 38287, 38286, 29466, 29388, 28037, 1747, 1305, 1303, 1290, 1282, 1270] + "Eukarya": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [2510778, 1047171, 379413, 119676, 117179, 76777, 76775, 76773, 44058, 41880, 36894, 34391, 31312, 5480, 5068, 3074, 2762] + "Viruses": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [185639, 746832, 10566, 493803, 10279, 746830, 746831, 46771] +``` + +BacDive and eHOMD specific subsets. Dump date: 2022-03-09 ```bash scripts/bacdive_download.py @@ -64,15 +88,15 @@ scripts/ehomd_download.py The downloaded MGnify database file should be provided in the main configuration file for grimer as follows: - external: - mgnify: "files/mgnify.tsv" - -## mgnify.tsv +```yaml +external: + mgnify: "files/mgnify5989.tsv" +``` +### mgnify.tsv -MGnify dump date: 2021-04-08 (latest study accession MGYS00005724) +MGnify dump date: 2022-03-09 (latest study accession MGYS00005989) ```bash -seq -f "MGYS%08g" 256 5724 | xargs -P 24 -I {} scripts/mgnify_download.py {} mgnify_dump_20210408/ > mgnify_dump_20210408.log 2>|1 | - -scripts/mgnify_extract.py -f mgnify_dump_20210408 -t 10 -o files/mgnify.tsv +seq -f "MGYS%08g" 256 5989 | xargs -P 24 -I {} scripts/mgnify_download.py -i {} -v -g -o mgnify_dump_5989/ > mgnify_dump_5989.log 2>|1 | +scripts/mgnify_extract.py -f mgnify_dump_5989 -t 10 -o files/mgnify.tsv ``` diff --git a/files/human-related.yml b/files/human-related.yml index d994ffa..dc9afe3 100644 --- a/files/human-related.yml +++ b/files/human-related.yml @@ -1,44 +1,39 @@ +"Top organisms form the human skin microbiome": + "Bacteria": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [257758, 225324, 169292, 161879, 146827, 43765, 38304, 38287, 38286, 29466, 29388, 28037, 1747, 1305, 1303, 1290, 1282, 1270] + "Eukarya": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [2510778, 1047171, 379413, 119676, 117179, 76777, 76775, 76773, 44058, 41880, 36894, 34391, 31312, 5480, 5068, 3074, 2762] + "Viruses": + url: "https://doi.org/10.1038/nrmicro.2017.157" + ids: [185639, 746832, 10566, 493803, 10279, 746830, 746831, 46771] +"Human Oral Microbiome Database (eHOMD)": + "Oral": + url: "http://www.ehomd.org/?name=HOMD" + ids: [712116, 469621, 888056, 767100, 1194526, 2081962, 1547448, 1225197, 936596, 1074118, 1321781, 947828, 1403335, 1046629, 39950, 1242967, 1287474, 1074106, 999424, 319701, 999429, 546268, 927666, 1401072, 857100, 1035189, 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293653, 1225198, 2748177, 1074163, 362948] + "Nasal": + url: "http://www.ehomd.org/?name=HOMD" + ids: [406556, 516950, 1203561, 418127, 282458, 883103, 512767, 497962, 1715217, 1236608, 282459, 1069628, 857571, 553567, 1739317, 857577, 451515, 656912, 760791, 487214, 374927, 1069626, 452948, 553573, 1203622, 656913, 450394, 869216, 553594, 374933, 512566, 374932, 760746, 488222, 548474, 456482, 521005, 869309, 525381, 857575, 1203559, 1069625, 359786, 1203627, 760809, 453362, 406557, 71421, 553574, 574093, 869215, 196620, 553583, 760861, 488221, 512769, 1203566, 1203632, 189423, 406563, 1834153, 1203619, 553580, 406558, 553590, 561276, 869269, 455227, 453361, 760810, 478, 553592, 281310, 548473, 374928, 548470, 1069623, 548475, 553581, 374931, 158879, 553577, 488223, 553571, 553588, 857578, 480, 553601, 857574, 262728, 886289, 585161, 453366, 171101, 760834, 1203625, 497980, 857579, 453365, 521004, 406561, 262727, 375177, 359787, 375063, 374930, 1203557, 158878, 935897, 760787, 453363, 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1544413, 239, 483, 29354, 41202, 38304] + ids: [760, 253, 38304, 154288, 478, 29394, 37330, 37326, 247, 488, 2047, 1671023, 759851, 197575, 945844, 47312, 1401, 59561, 479, 2035, 46125, 34062, 732, 1578165, 207340, 161879, 539, 1931, 187491, 28037, 480, 420404, 1544413, 616, 41202, 38290, 545, 40216, 1544416, 529, 192066, 1270, 753, 490, 29354, 485, 134533, 739, 1671022, 1379, 650, 90241, 1280, 1824, 1351, 1655, 280147, 46124, 69392, 239, 1309, 813, 37329, 571, 47478, 29391, 134375, 1409, 43765, 498, 147645, 1685, 72556, 51671, 723, 752, 1302, 28172, 483, 83558, 1750, 40091, 180588, 47846, 370622, 740, 726, 472, 457921, 38284, 68892, 1313, 477, 756689, 727, 1304, 1177728, 504, 29432, 666, 1396, 1871047, 1720, 161890, 735, 2055, 38287] "Nose": url: "https://bacdive.dsmz.de/search?search=taxid:{}" - ids: [59823, 72556, 131111, 1282, 28264, 38284, 1280, 520, 43990, 615, 727, 1328, 1313, 90367, 760, 181487, 29394, 478, 732, 40324, 33889, 306, 39950, 1304, 1673725, 65058, 74319, 1591, 90241, 105219, 504, 286802, 195105, 574] -"Human-related bacterial isolates from BacDive": + ids: [1591, 90241, 1280, 306, 760, 195105, 1673725, 74319, 478, 29394, 520, 40324, 28264, 39950, 38284, 1282, 31973, 1313, 72556, 727, 181487, 1304, 59823, 504, 65058, 105219, 615, 1328, 131111, 43990, 732, 286802, 33889] + "Skin/Nail/Hair": + url: "https://bacdive.dsmz.de/search?search=taxid:{}" + ids: [282305, 1280, 94138, 131110, 1655, 1891644, 729, 1780, 29382, 33010, 202789, 38290, 33034, 37326, 28264, 1347369, 66228, 521392, 1766, 472, 169292, 1261, 1747, 45254, 1869190, 2047, 1817405, 1986155, 1282, 1270, 33918, 1314, 861, 43765, 281920, 29388, 663, 1352, 106654, 1260, 1931, 181487, 1276, 59823, 1965292, 132933, 1286, 1347368, 37923, 29432, 730, 36740, 470, 1622, 1781, 36809, 1288, 1698, 59561, 2035, 1720, 29506, 131111, 1283, 38289, 1648, 1273, 34062, 1292, 287, 1753, 1656, 1290, 71999, 672] "Oral": url: "https://bacdive.dsmz.de/search?search=taxid:{}" - ids: [651822, 1389922, 519, 618, 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1434264, 889201, 1227269, 936561, 712633, 553201, 935589, 1074138, 1095741, 1074146, 187101, 857135, 537973, 857136, 857134, 857121, 712357, 469621, 1287474, 1074119, 66851, 596319, 712938, 1095740, 585203, 1095747, 1194526, 887325, 1074118, 556263, 888019, 754506, 679193, 435838, 1309, 857114, 1074190, 286636, 546271, 575611, 1321784, 1127699, 1127693, 1125699, 1030843, 999436, 525376, 857126, 1287476, 768726, 1316933, 706439, 575590, 696216, 1074178, 1316596, 1074108, 864567, 1203602, 160491, 1111678, 1114966, 754507, 1000588, 1302863, 491076, 999422, 1434262, 634994, 888061, 1785995, 1035189, 907490, 1225195, 324831, 1403338, 1115803, 883094, 1448850, 487215, 1401072, 1035187, 1074107, 1123249, 45243, 553171, 363952, 868129, 1321779, 712982, 885272, 1234601, 1074165, 1095745, 585501, 694569, 1321817, 861454, 702439, 999425, 888741, 1009852, 321967, 1120979, 1334627, 1161421, 546265, 562983, 679195, 469602, 1225205, 1411022, 1155071, 662598, 1046629, 1074115, 857107, 857109, 596315, 651822, 562982, 1074066, 857292, 246198, 1120943, 546262, 1750, 857102, 370554, 566549, 1074185, 935599, 1035190, 862971, 857291, 760570, 1321816, 857104, 525326, 649742, 999423, 1122174, 2572087, 887929, 1340486, 857099, 1074122, 871541, 1225202, 1074156, 1074161, 592031, 1104322, 1095748, 575612, 999414, 1095735, 1122982, 1297567, 862515, 1739543, 1074111, 997353, 907488, 1256230, 679196, 525337, 904294, 748671, 596320, 1403335, 1074175, 873513, 1074171, 857153, 857123, 653386, 360104, 888828, 1321782, 999430, 1125721, 857145, 1120941, 1028803, 1120957, 352165, 521393, 562973, 857100, 942513, 246201, 1448849, 1008453, 929793, 1739254, 888052, 857133, 1434258, 1307427, 489653, 334390, 1225196, 563032, 198466, 619693, 1661745, 1257041, 190304, 888055, 767453, 1035196, 620833, 114527, 1257038, 1074173, 523794, 712961, 1035184, 2572088, 411466, 553177, 1403949, 1225200, 1316254, 596317, 1074179, 706437, 1401068, 370553, 857151, 1161422, 1411915, 857116, 40543, 1225192, 706434, 1243032, 1122980, 1434260, 1122172, 1203259, 686660, 469607, 1128111, 905067, 1395125, 1046624, 1122171, 1123310, 1122993, 1074160, 585202, 944557, 1236508, 1074113, 1125718, 1403336, 714, 1127690, 1415766, 936563, 638302, 1203603, 1074135, 888059, 1005705, 999424, 862970, 1321822, 857131, 435830, 1225204, 879310, 888746, 999438, 1236516, 1074159, 655813, 1415626, 712710, 35519, 857120, 857111, 1321818, 1297565, 857140, 679198, 762965, 626369, 1074154, 1074120, 1122984, 1074106, 997356, 525375, 1095746, 862966, 857101, 887901, 857124, 1074183, 1256219, 712365, 1127694, 1035195, 1074180, 888049, 1074151, 604162, 866776, 746361, 873533, 546275, 1859695, 1074143, 862969, 1095738, 457403, 1074095, 999440, 563033, 467705, 1257040, 1227262, 888062, 1073362, 857103, 546264, 1028802, 1120942, 209882, 1125717, 888742, 1415765, 1423814, 1035194, 888060, 1227266, 1283280, 164, 1074116, 1073367, 1660, 479436, 525325, 374833, 693991, 857138, 596323, 1122985, 1074157, 1114965, 2748316, 1074136, 77917, 1321786, 469604, 857112, 864565, 857137, 521097, 927666, 1095737, 888048, 713030, 1297564, 857139, 28112, 1095744, 1401073, 1028805, 1227276, 1074163, 999435, 1051972, 796943, 1423799, 1353243, 1161902, 1859694, 1074121, 1167007, 837, 1167628, 1256223, 1073353, 904306, 1203258, 999434] - "Nasal": - url: "http://www.ehomd.org/?name=HOMD" - ids: [553601, 406557, 497962, 1715211, 170187, 553573, 196620, 93062, 553594, 406559, 1008452, 1608882, 488223, 1203632, 857577, 727, 869269, 478, 553568, 760810, 1739522, 548470, 857573, 281310, 455227, 521004, 359787, 1095736, 374931, 1069623, 585203, 1715217, 497980, 585202, 1715123, 1069628, 553580, 1203562, 1834153, 1203627, 866630, 1415766, 553583, 158879, 760787, 548475, 453361, 406561, 451516, 869215, 553574, 553590, 282458, 1608898, 456482, 374928, 553592, 553588, 1069626, 452948, 480, 1130804, 1095746, 453362, 375177, 406556, 71421, 273036, 451515, 548474, 521005, 374930, 406560, 1035187, 1203619, 553565, 406562, 1095745, 1859695, 1069625, 857578, 585204, 1739317, 862964, 1340484, 681288, 1239793, 487213, 857581, 497963, 760791, 857574, 374933, 1739280, 869216, 406563, 453366, 574093, 516950, 1415765, 453363, 262727, 857575, 453364, 1203625, 548473, 1340485, 406558, 703339, 760746, 1340486, 656912, 189423, 1239792, 512767, 857572, 857579, 760834, 760861, 1203622, 585161, 1203557, 1203566, 373153, 1203559, 1095735, 1203561, 656913, 886289, 262728, 488221, 553571, 869309, 553577, 171101, 375432, 359786, 857576, 1236608, 1095737, 1121367, 375063, 888828, 374927, 1203624, 365659, 525381, 760809, 512769, 418127, 595501, 246201, 512566, 546342, 158878, 883103, 488222, 1008453, 857571, 1739254, 487214, 453365, 1739452, 90241, 553567, 28037, 512768, 553581, 426430, 553596, 93061, 935897, 450394, 282459, 561276, 374932, 862965] -"Human-related bacterial isolates from BacDive": - "Skin/Nail/Hair": - url: "https://bacdive.dsmz.de/search?search=taxid:{}" - ids: [1747, 106654, 1986155, 59823, 1869190, 1270, 71999, 1283, 1276, 131110, 1648, 1656, 472, 1352, 34062, 729, 29388, 2047, 28264, 1314, 1280, 1290, 672, 59561, 1780, 33918, 37326, 29432, 1286, 1891644, 74703, 90367, 1931, 33010, 1720, 1965292, 181487, 169292, 38290, 29506, 1622, 281920, 1292, 1781, 861, 1698, 1260, 2035, 202789, 521392, 470, 663, 29382, 1659, 1288, 37923, 1655, 45254, 1753, 1261, 38289, 36740, 1273, 1347368, 33034, 1347369, 1282, 66228, 132933, 43765, 287] -"Top organisms form the human skin microbiome" : - "Bacteria": - url: "https://doi.org/10.1038/nrmicro.2017.157" - ids: [257758, 225324, 169292, 161879, 146827, 43765, 38304, 38287, 38286, 29466, 29388, 28037, 1747, 1305, 1303, 1290, 1282, 1270] - "Eukarya": - url: "https://doi.org/10.1038/nrmicro.2017.157" - ids: [2510778, 1047171, 379413, 119676, 117179, 76777, 76775, 76773, 44058, 41880, 36894, 34391, 31312, 5480, 5068, 3074, 2762] - "Viruses": - url: "https://doi.org/10.1038/nrmicro.2017.157" - ids: [185639, 746832, 10566, 493803, 10279, 746830, 746831, 46771] + ids: [152331, 113107, 157688, 979627, 45634, 60133, 157687, 1624, 1583331, 1632, 249188] diff --git a/files/mgnify.tsv b/files/mgnify5989.tsv similarity index 96% rename from files/mgnify.tsv rename to files/mgnify5989.tsv index 97cf8b3..c41b3c2 100644 --- a/files/mgnify.tsv +++ b/files/mgnify5989.tsv @@ -1,67 +1,71 @@ superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lake 16.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Pond 5.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Sediment 28.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Fecal 58.0 -superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:Saliva 25.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Sediment 30.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Fecal 61.0 +superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 superkingdom Bacteria root:Host-associated:Birds:Digestive system:Fecal 8.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 2.0 superkingdom Bacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -superkingdom Bacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 132.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine 362.0 +superkingdom Bacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 143.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine 385.0 superkingdom Bacteria root:Host-associated:Fish 3.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 15.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic 79.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system 32.0 -superkingdom Bacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 26.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic 82.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system 34.0 +superkingdom Bacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 27.0 superkingdom Bacteria root:Environmental:Terrestrial:Geologic 1.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Forest soil 6.0 superkingdom Bacteria root:Environmental:Aquatic:Lentic:Brackish 19.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 21.0 -superkingdom Bacteria root:Host-associated:Human 15.0 -superkingdom Bacteria root:Host-associated:Plants 49.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 22.0 +superkingdom Bacteria root:Host-associated:Human 16.0 +superkingdom Bacteria root:Host-associated:Plants 51.0 superkingdom Bacteria root:Environmental:Aquatic:Estuary:Sediment 20.0 -superkingdom Bacteria root:Host-associated:Human:Digestive system:Large intestine 13.0 +superkingdom Bacteria root:Host-associated:Human:Digestive system:Large intestine 14.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Agricultural 16.0 superkingdom Bacteria root:Engineered:Bioreactor 97.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 32.0 -superkingdom Bacteria root:Engineered:Wastewater:Activated Sludge 70.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 33.0 +superkingdom Bacteria root:Engineered:Wastewater:Activated Sludge 71.0 superkingdom Bacteria root:Host-associated:Human:Skin 23.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Permafrost 6.0 -superkingdom Bacteria root:Mixed 35.0 -superkingdom Bacteria root:Host-associated:Mammals 19.0 +superkingdom Bacteria root:Mixed 37.0 +superkingdom Bacteria root:Host-associated:Mammals 20.0 superkingdom Bacteria root:Host-associated:Amphibia 3.0 -superkingdom Bacteria root:Host-associated:Human:Digestive system:Intestine 4.0 -superkingdom Bacteria root:Engineered:Food production:Fermented beverages 10.0 +superkingdom Bacteria root:Host-associated:Human:Digestive system:Intestine 5.0 +superkingdom Bacteria root:Engineered:Food production:Fermented beverages 11.0 superkingdom Bacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 superkingdom Bacteria root:Engineered:Wastewater 25.0 superkingdom Bacteria root:Host-associated:Human:Reproductive system:Vagina 9.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 58.0 -superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral 61.0 -superkingdom Bacteria root:Engineered:Food production:Dairy products 5.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 61.0 +superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral 62.0 +superkingdom Bacteria root:Engineered:Food production:Dairy products 7.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Contaminated 5.0 superkingdom Bacteria root:Host-associated:Plants:Phylloplane 5.0 -superkingdom Bacteria root:Host-associated:Plants:Rhizosphere 40.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 27.0 -superkingdom Bacteria root:Environmental:Terrestrial:Soil 66.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Sediment 169.0 -superkingdom Bacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +superkingdom Bacteria root:Host-associated:Plants:Rhizosphere 42.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 28.0 +superkingdom Bacteria root:Environmental:Terrestrial:Soil 69.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Sediment 172.0 +superkingdom Bacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 +superkingdom Bacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic 4.0 superkingdom Bacteria root:Environmental:Aquatic:Sediment 30.0 superkingdom Bacteria root:Environmental:Aquatic 10.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Midgut 4.0 superkingdom Bacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 superkingdom Bacteria root:Engineered:Biogas plant:Wet fermentation 7.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 superkingdom Bacteria root:Host-associated:Porifera 18.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 10.0 +superkingdom Bacteria root:Engineered:Lab enrichment 4.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 11.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Wetlands 1.0 superkingdom Bacteria root:Engineered:Lab Synthesis 1.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Grasslands 5.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 superkingdom Bacteria root:Host-associated:Birds:Digestive system:Ceca 6.0 superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +superkingdom Bacteria root:Host-associated:Plants:Rhizosphere:Soil 5.0 superkingdom Bacteria root:Host-associated:Human:Digestive system 36.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater 6.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater 7.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 5.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 superkingdom Bacteria root:Environmental:Aquatic:Thermal springs 3.0 @@ -73,11 +77,11 @@ superkingdom Bacteria root:Host-associated:Human:Respiratory system:Pulmonary sy superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Drinking water 3.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Desert 2.0 superkingdom Bacteria root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 18.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 19.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 superkingdom Bacteria root:Host-associated:Algae:Red algae 9.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -superkingdom Bacteria root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +superkingdom Bacteria root:Host-associated:Arthropoda:Digestive system:Gut 3.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 9.0 superkingdom Bacteria root:Engineered:Lab enrichment:Defined media 11.0 superkingdom Bacteria root:Host-associated:Plants:Root 8.0 @@ -88,9 +92,9 @@ superkingdom Bacteria root:Environmental:Aquatic:Marine:Neritic zone 2.0 superkingdom Bacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 3.0 superkingdom Bacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 23.0 -superkingdom Bacteria root:Host-associated:Plants:Rhizosphere:Soil 3.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine 9.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine 10.0 superkingdom Bacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 +superkingdom Bacteria root:Engineered:Food production:Fermented seafood 1.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lentic 2.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 superkingdom Bacteria root:Environmental:Aquatic:Estuary 33.0 @@ -104,8 +108,7 @@ superkingdom Bacteria root:Engineered:Modeled 1.0 superkingdom Bacteria root:Host-associated:Insecta:Digestive system 8.0 superkingdom Bacteria root:Host-associated 2.0 superkingdom Bacteria root:Host-associated:Mollusca 5.0 -superkingdom Bacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -superkingdom Bacteria root:Host-associated:Fish:Digestive system 2.0 +superkingdom Bacteria root:Host-associated:Fish:Digestive system 3.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Mine 1.0 superkingdom Bacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -115,22 +118,23 @@ superkingdom Bacteria root:Host-associated:Mammals:Respiratory system:Pulmonary superkingdom Bacteria root:Environmental:Aquatic:Marine:Brackish 12.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Clay 3.0 superkingdom Bacteria root:Host-associated:Fish:Digestive system:Foregut 1.0 -superkingdom Bacteria root:Engineered:Bioreactor:Continuous culture 5.0 +superkingdom Bacteria root:Engineered:Bioreactor:Continuous culture 6.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 4.0 superkingdom Bacteria root:Host-associated:Human:Reproductive system:Female 1.0 superkingdom Bacteria root:Engineered:Solid waste 1.0 superkingdom Bacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 superkingdom Bacteria root:Environmental:Aquatic:Thermal springs:Sediment 4.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater 5.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater 7.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 5.0 -superkingdom Bacteria root:Environmental:Aquatic:Marine:Marginal Sea 9.0 +superkingdom Bacteria root:Environmental:Aquatic:Marine:Marginal Sea 10.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Pelagic 14.0 -superkingdom Bacteria root:Engineered:Wastewater:Water and sludge 9.0 -superkingdom Bacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +superkingdom Bacteria root:Engineered:Wastewater:Water and sludge 11.0 +superkingdom Bacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +superkingdom Bacteria root:Host-associated:Invertebrates:Cnidaria:Coral 13.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 superkingdom Bacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 3.0 @@ -142,18 +146,17 @@ superkingdom Bacteria root:Engineered:Lab Synthesis:Genetic cross 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 7.0 superkingdom Bacteria root:Host-associated:Reptile:Oral cavity 1.0 -superkingdom Bacteria root:Host-associated:Invertebrates:Cnidaria:Coral 12.0 +superkingdom Bacteria root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Ice 2.0 superkingdom Bacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Crop 2.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 superkingdom Bacteria root:Host-associated:Fish:Digestive system:Intestine 3.0 -superkingdom Bacteria root:Host-associated:Insecta 8.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 +superkingdom Bacteria root:Host-associated:Insecta 9.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 3.0 superkingdom Bacteria root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -superkingdom Bacteria root:Engineered:Built environment 13.0 +superkingdom Bacteria root:Engineered:Built environment 14.0 superkingdom Bacteria root:Host-associated:Birds:Digestive system 7.0 -superkingdom Bacteria root:Engineered:Lab enrichment 4.0 superkingdom Bacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 superkingdom Bacteria root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 6.0 @@ -181,32 +184,34 @@ superkingdom Bacteria root:Host-associated:Fish:Skin 2.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 superkingdom Bacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +superkingdom Bacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 superkingdom Bacteria root:Environmental:Air 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 superkingdom Bacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 superkingdom Bacteria root:Host-associated:Arthropoda 2.0 superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +superkingdom Bacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 6.0 superkingdom Bacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 superkingdom Bacteria root:Host-associated:Fungi 1.0 superkingdom Bacteria root:Engineered:Bioremediation 1.0 superkingdom Bacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 superkingdom Bacteria root:Host-associated:Human:Respiratory system 4.0 superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +superkingdom Bacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 superkingdom Bacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 superkingdom Bacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 superkingdom Bacteria root:Engineered:Bioremediation:Hydrocarbon 1.0 superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 superkingdom Bacteria root:Engineered:Biotransformation 1.0 -superkingdom Bacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +superkingdom Bacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 superkingdom Bacteria root:Host-associated:Mammals:Skin 3.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 -superkingdom Bacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +superkingdom Bacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 superkingdom Bacteria root:Environmental:Terrestrial:Oil reservoir 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 superkingdom Bacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +superkingdom Bacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 superkingdom Bacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 superkingdom Bacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 @@ -225,6 +230,7 @@ superkingdom Bacteria root:Engineered:Solid waste:Composting:Bioreactor 1.0 superkingdom Bacteria root 1.0 superkingdom Bacteria root:Environmental:Terrestrial:Volcanic 2.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +superkingdom Bacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 superkingdom Bacteria root:Host-associated:Microbial 1.0 superkingdom Bacteria root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Volcanic 1.0 @@ -235,6 +241,7 @@ superkingdom Bacteria root:Host-associated:Microbial:Bacteria 1.0 superkingdom Bacteria root:Environmental:Aquatic:Marine:Oil seeps 1.0 superkingdom Bacteria root:Host-associated:Invertebrates:Cnidaria 1.0 superkingdom Bacteria root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 +superkingdom Bacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 superkingdom Bacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Lake 14.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Pond 5.0 @@ -242,12 +249,12 @@ superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Sediment 15.0 superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Fecal 27.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system:Oral:Saliva 19.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -superkingdom Chloroplast root:Host-associated:Human:Digestive system:Large intestine:Fecal 87.0 -superkingdom Chloroplast root:Environmental:Aquatic:Marine 239.0 +superkingdom Chloroplast root:Host-associated:Human:Digestive system:Large intestine:Fecal 88.0 +superkingdom Chloroplast root:Environmental:Aquatic:Marine 240.0 superkingdom Chloroplast root:Host-associated:Fish 3.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Oceanic:Sediment 13.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Oceanic 65.0 -superkingdom Chloroplast root:Host-associated:Mammals:Digestive system 22.0 +superkingdom Chloroplast root:Host-associated:Mammals:Digestive system 23.0 superkingdom Chloroplast root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil:Forest soil 4.0 superkingdom Chloroplast root:Environmental:Aquatic:Lentic:Brackish 14.0 @@ -280,18 +287,22 @@ superkingdom Chloroplast root:Environmental:Aquatic:Marine:Coastal:Sediment 24.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil 52.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Sediment 132.0 superkingdom Chloroplast root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +superkingdom Chloroplast root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Lotic 3.0 superkingdom Chloroplast root:Environmental:Aquatic:Sediment 27.0 superkingdom Chloroplast root:Environmental:Aquatic 10.0 +superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Midgut 1.0 superkingdom Chloroplast root:Engineered:Biogas plant:Wet fermentation 6.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 superkingdom Chloroplast root:Host-associated:Porifera 18.0 +superkingdom Chloroplast root:Engineered:Lab enrichment 3.0 superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil:Wetlands 1.0 superkingdom Chloroplast root:Engineered:Lab Synthesis 1.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 superkingdom Chloroplast root:Host-associated:Birds:Digestive system:Ceca 1.0 superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Stomach 1.0 +superkingdom Chloroplast root:Host-associated:Plants:Rhizosphere:Soil 2.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system 29.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater 4.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -319,7 +330,6 @@ superkingdom Chloroplast root:Environmental:Terrestrial:Deep subsurface 2.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Neritic zone 2.0 superkingdom Chloroplast root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Lentic:Sediment 16.0 -superkingdom Chloroplast root:Host-associated:Plants:Rhizosphere:Soil 2.0 superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Large intestine 2.0 superkingdom Chloroplast root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 @@ -333,7 +343,6 @@ superkingdom Chloroplast root:Engineered:Modeled 1.0 superkingdom Chloroplast root:Host-associated:Insecta:Digestive system 4.0 superkingdom Chloroplast root:Host-associated 2.0 superkingdom Chloroplast root:Host-associated:Mollusca 2.0 -superkingdom Chloroplast root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Chloroplast root:Host-associated:Fish:Digestive system 1.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil:Mine 1.0 superkingdom Chloroplast root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 @@ -358,6 +367,7 @@ superkingdom Chloroplast root:Environmental:Aquatic:Marine:Marginal Sea 7.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Pelagic 14.0 superkingdom Chloroplast root:Engineered:Wastewater:Water and sludge 7.0 superkingdom Chloroplast root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +superkingdom Chloroplast root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Intertidal zone 2.0 superkingdom Chloroplast root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -367,7 +377,6 @@ superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Groundwater:Mine superkingdom Chloroplast root:Host-associated:Mammals:Gastrointestinal tract 1.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 -superkingdom Chloroplast root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Ice 2.0 superkingdom Chloroplast root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 superkingdom Chloroplast root:Environmental:Terrestrial:Soil:Crop 1.0 @@ -377,7 +386,6 @@ superkingdom Chloroplast root:Host-associated:Insecta 4.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 superkingdom Chloroplast root:Engineered:Built environment 11.0 superkingdom Chloroplast root:Host-associated:Birds:Digestive system 4.0 -superkingdom Chloroplast root:Engineered:Lab enrichment 3.0 superkingdom Chloroplast root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 superkingdom Chloroplast root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 superkingdom Chloroplast root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 7.0 @@ -400,7 +408,6 @@ superkingdom Chloroplast root:Host-associated:Fish:Skin 2.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 superkingdom Chloroplast root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -superkingdom Chloroplast root:Host-associated:Mammals:Digestive system:Midgut 1.0 superkingdom Chloroplast root:Environmental:Aquatic:Freshwater:Storm water 1.0 superkingdom Chloroplast root:Environmental:Air 1.0 superkingdom Chloroplast root:Host-associated:Human:Digestive system:Oral:Throat 1.0 @@ -445,12 +452,12 @@ superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Sediment 15.0 superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Fecal 25.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system:Oral:Saliva 13.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -superkingdom Mitochondria root:Host-associated:Human:Digestive system:Large intestine:Fecal 99.0 -superkingdom Mitochondria root:Environmental:Aquatic:Marine 262.0 +superkingdom Mitochondria root:Host-associated:Human:Digestive system:Large intestine:Fecal 100.0 +superkingdom Mitochondria root:Environmental:Aquatic:Marine 263.0 superkingdom Mitochondria root:Host-associated:Fish 3.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Oceanic:Sediment 13.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Oceanic 60.0 -superkingdom Mitochondria root:Host-associated:Mammals:Digestive system 23.0 +superkingdom Mitochondria root:Host-associated:Mammals:Digestive system 24.0 superkingdom Mitochondria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Forest soil 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Lentic:Brackish 14.0 @@ -483,12 +490,15 @@ superkingdom Mitochondria root:Environmental:Aquatic:Marine:Coastal:Sediment 24. superkingdom Mitochondria root:Environmental:Terrestrial:Soil 51.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Sediment 125.0 superkingdom Mitochondria root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +superkingdom Mitochondria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Lotic 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Sediment 26.0 superkingdom Mitochondria root:Environmental:Aquatic 9.0 +superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Midgut 1.0 superkingdom Mitochondria root:Engineered:Biogas plant:Wet fermentation 4.0 superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 superkingdom Mitochondria root:Host-associated:Porifera 17.0 +superkingdom Mitochondria root:Engineered:Lab enrichment 3.0 superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Wetlands 1.0 superkingdom Mitochondria root:Engineered:Lab Synthesis 1.0 @@ -496,6 +506,7 @@ superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Grasslands 1.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 superkingdom Mitochondria root:Host-associated:Birds:Digestive system:Ceca 1.0 superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +superkingdom Mitochondria root:Host-associated:Plants:Rhizosphere:Soil 2.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system 28.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -523,7 +534,6 @@ superkingdom Mitochondria root:Environmental:Terrestrial:Deep subsurface 1.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Neritic zone 2.0 superkingdom Mitochondria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 11.0 -superkingdom Mitochondria root:Host-associated:Plants:Rhizosphere:Soil 2.0 superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Large intestine 3.0 superkingdom Mitochondria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 @@ -537,7 +547,6 @@ superkingdom Mitochondria root:Engineered:Modeled 1.0 superkingdom Mitochondria root:Host-associated:Insecta:Digestive system 3.0 superkingdom Mitochondria root:Host-associated 2.0 superkingdom Mitochondria root:Host-associated:Mollusca 3.0 -superkingdom Mitochondria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Mitochondria root:Host-associated:Fish:Digestive system 1.0 superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Mine 1.0 superkingdom Mitochondria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 @@ -555,12 +564,13 @@ superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Lotic:Low land r superkingdom Mitochondria root:Environmental:Aquatic:Thermal springs:Sediment 2.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Groundwater 5.0 +superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Groundwater 6.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Pelagic 14.0 superkingdom Mitochondria root:Engineered:Wastewater:Water and sludge 7.0 superkingdom Mitochondria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +superkingdom Mitochondria root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 superkingdom Mitochondria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -569,7 +579,6 @@ superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Groundwater:Mine superkingdom Mitochondria root:Host-associated:Mammals:Gastrointestinal tract 1.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 4.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -superkingdom Mitochondria root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Ice 2.0 superkingdom Mitochondria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 superkingdom Mitochondria root:Environmental:Terrestrial:Soil:Crop 1.0 @@ -579,7 +588,6 @@ superkingdom Mitochondria root:Host-associated:Insecta 5.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 superkingdom Mitochondria root:Engineered:Built environment 12.0 superkingdom Mitochondria root:Host-associated:Birds:Digestive system 4.0 -superkingdom Mitochondria root:Engineered:Lab enrichment 3.0 superkingdom Mitochondria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 superkingdom Mitochondria root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 superkingdom Mitochondria root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 @@ -604,7 +612,6 @@ superkingdom Mitochondria root:Host-associated:Fish:Skin 2.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 superkingdom Mitochondria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -superkingdom Mitochondria root:Host-associated:Mammals:Digestive system:Midgut 1.0 superkingdom Mitochondria root:Environmental:Aquatic:Freshwater:Storm water 1.0 superkingdom Mitochondria root:Environmental:Air 1.0 superkingdom Mitochondria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 @@ -645,66 +652,70 @@ superkingdom Mitochondria root:Engineered:Wastewater:Industrial wastewater:Mine superkingdom Mitochondria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lake 15.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Pond 4.0 -superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Sediment 21.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Fecal 48.0 -superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:Saliva 10.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Sediment 22.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Fecal 50.0 +superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:Saliva 11.0 superkingdom Eukaryota root:Host-associated:Birds:Digestive system:Fecal 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 superkingdom Eukaryota root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -superkingdom Eukaryota root:Host-associated:Human:Digestive system:Large intestine:Fecal 114.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine 309.0 +superkingdom Eukaryota root:Host-associated:Human:Digestive system:Large intestine:Fecal 122.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine 318.0 superkingdom Eukaryota root:Host-associated:Fish 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Sediment 13.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic 76.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system 29.0 -superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 12.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic 79.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system 30.0 +superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 13.0 superkingdom Eukaryota root:Environmental:Terrestrial:Geologic 1.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Forest soil 8.0 superkingdom Eukaryota root:Environmental:Aquatic:Lentic:Brackish 16.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 10.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 superkingdom Eukaryota root:Host-associated:Human 12.0 -superkingdom Eukaryota root:Host-associated:Plants 67.0 +superkingdom Eukaryota root:Host-associated:Plants 68.0 superkingdom Eukaryota root:Environmental:Aquatic:Estuary:Sediment 13.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Large intestine 10.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Agricultural 13.0 superkingdom Eukaryota root:Engineered:Bioreactor 63.0 -superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 23.0 superkingdom Eukaryota root:Engineered:Wastewater:Activated Sludge 59.0 superkingdom Eukaryota root:Host-associated:Human:Skin 22.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Permafrost 5.0 -superkingdom Eukaryota root:Mixed 27.0 -superkingdom Eukaryota root:Host-associated:Mammals 18.0 +superkingdom Eukaryota root:Mixed 29.0 +superkingdom Eukaryota root:Host-associated:Mammals 19.0 superkingdom Eukaryota root:Host-associated:Amphibia 3.0 -superkingdom Eukaryota root:Host-associated:Human:Digestive system:Intestine 2.0 -superkingdom Eukaryota root:Engineered:Food production:Fermented beverages 9.0 +superkingdom Eukaryota root:Host-associated:Human:Digestive system:Intestine 3.0 +superkingdom Eukaryota root:Engineered:Food production:Fermented beverages 10.0 superkingdom Eukaryota root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 superkingdom Eukaryota root:Engineered:Wastewater 19.0 superkingdom Eukaryota root:Host-associated:Human:Reproductive system:Vagina 7.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 56.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 59.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral 34.0 -superkingdom Eukaryota root:Engineered:Food production:Dairy products 4.0 +superkingdom Eukaryota root:Engineered:Food production:Dairy products 6.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Contaminated 5.0 superkingdom Eukaryota root:Host-associated:Plants:Phylloplane 9.0 -superkingdom Eukaryota root:Host-associated:Plants:Rhizosphere 38.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 -superkingdom Eukaryota root:Environmental:Terrestrial:Soil 51.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Sediment 127.0 -superkingdom Eukaryota root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +superkingdom Eukaryota root:Host-associated:Plants:Rhizosphere 40.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Coastal:Sediment 20.0 +superkingdom Eukaryota root:Environmental:Terrestrial:Soil 55.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Sediment 130.0 +superkingdom Eukaryota root:Engineered:Modeled:Simulated communities (microbial mixture) 6.0 +superkingdom Eukaryota root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lotic 4.0 superkingdom Eukaryota root:Environmental:Aquatic:Sediment 18.0 superkingdom Eukaryota root:Environmental:Aquatic 8.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Midgut 4.0 superkingdom Eukaryota root:Engineered:Biogas plant:Wet fermentation 7.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 superkingdom Eukaryota root:Host-associated:Porifera 15.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 +superkingdom Eukaryota root:Engineered:Lab enrichment 4.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Wetlands 1.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Grasslands 5.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 superkingdom Eukaryota root:Host-associated:Birds:Digestive system:Ceca 3.0 superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Stomach 1.0 +superkingdom Eukaryota root:Host-associated:Plants:Rhizosphere:Soil 6.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system 31.0 -superkingdom Eukaryota root:Environmental:Aquatic:Freshwater 6.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater 7.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs 1.0 @@ -716,14 +727,14 @@ superkingdom Eukaryota root:Host-associated:Human:Respiratory system:Pulmonary s superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Drinking water 3.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Desert 1.0 superkingdom Eukaryota root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 13.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 4.0 superkingdom Eukaryota root:Host-associated:Algae:Red algae 9.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -superkingdom Eukaryota root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +superkingdom Eukaryota root:Host-associated:Arthropoda:Digestive system:Gut 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 superkingdom Eukaryota root:Engineered:Lab enrichment:Defined media 3.0 -superkingdom Eukaryota root:Host-associated:Plants:Root 10.0 +superkingdom Eukaryota root:Host-associated:Plants:Root 11.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oil-contaminated sediment 7.0 superkingdom Eukaryota root:Engineered:Food production 6.0 superkingdom Eukaryota root:Environmental:Terrestrial:Deep subsurface 5.0 @@ -731,8 +742,7 @@ superkingdom Eukaryota root:Environmental:Aquatic:Marine:Neritic zone 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 superkingdom Eukaryota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 8.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 15.0 -superkingdom Eukaryota root:Host-associated:Plants:Rhizosphere:Soil 4.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Large intestine 9.0 +superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Large intestine 10.0 superkingdom Eukaryota root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lentic 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 5.0 @@ -747,8 +757,7 @@ superkingdom Eukaryota root:Engineered:Modeled 1.0 superkingdom Eukaryota root:Host-associated:Insecta:Digestive system 8.0 superkingdom Eukaryota root:Host-associated 2.0 superkingdom Eukaryota root:Host-associated:Mollusca 5.0 -superkingdom Eukaryota root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -superkingdom Eukaryota root:Host-associated:Fish:Digestive system 2.0 +superkingdom Eukaryota root:Host-associated:Fish:Digestive system 3.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Mine 1.0 superkingdom Eukaryota root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -764,15 +773,17 @@ superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminate superkingdom Eukaryota root:Host-associated:Human:Reproductive system:Female 1.0 superkingdom Eukaryota root:Engineered:Solid waste 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Sediment 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 5.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater 4.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater 5.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -superkingdom Eukaryota root:Environmental:Aquatic:Marine:Marginal Sea 8.0 +superkingdom Eukaryota root:Environmental:Aquatic:Marine:Marginal Sea 9.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Pelagic 14.0 -superkingdom Eukaryota root:Engineered:Wastewater:Water and sludge 6.0 -superkingdom Eukaryota root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +superkingdom Eukaryota root:Engineered:Wastewater:Water and sludge 8.0 +superkingdom Eukaryota root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +superkingdom Eukaryota root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone 1.0 superkingdom Eukaryota root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -784,17 +795,17 @@ superkingdom Eukaryota root:Engineered:Lab Synthesis:Genetic cross 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Benthic 5.0 superkingdom Eukaryota root:Host-associated:Reptile:Oral cavity 1.0 -superkingdom Eukaryota root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 +superkingdom Eukaryota root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Ice 2.0 superkingdom Eukaryota root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Crop 2.0 superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 superkingdom Eukaryota root:Host-associated:Fish:Digestive system:Intestine 4.0 -superkingdom Eukaryota root:Host-associated:Insecta 7.0 +superkingdom Eukaryota root:Host-associated:Insecta 8.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 superkingdom Eukaryota root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -superkingdom Eukaryota root:Engineered:Built environment 12.0 +superkingdom Eukaryota root:Engineered:Built environment 13.0 superkingdom Eukaryota root:Host-associated:Birds:Digestive system 7.0 -superkingdom Eukaryota root:Engineered:Lab enrichment 3.0 superkingdom Eukaryota root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -820,15 +831,15 @@ superkingdom Eukaryota root:Host-associated:Fish:Skin 2.0 superkingdom Eukaryota root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 superkingdom Eukaryota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Midgut 1.0 +superkingdom Eukaryota root:Host-associated:Plants:Rhizoplane:Soil 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Storm water 1.0 superkingdom Eukaryota root:Environmental:Air 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 superkingdom Eukaryota root:Host-associated:Arthropoda 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 -superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +superkingdom Eukaryota root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 superkingdom Eukaryota root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 -superkingdom Eukaryota root:Host-associated:Fungi 1.0 +superkingdom Eukaryota root:Host-associated:Fungi 2.0 superkingdom Eukaryota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 superkingdom Eukaryota root:Host-associated:Human:Respiratory system 4.0 superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 @@ -837,6 +848,7 @@ superkingdom Eukaryota root:Host-associated:Mammals:Digestive system:Large intes superkingdom Eukaryota root:Engineered:Biotransformation 1.0 superkingdom Eukaryota root:Host-associated:Mammals:Skin 3.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 +superkingdom Eukaryota root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 superkingdom Eukaryota root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -853,6 +865,7 @@ superkingdom Eukaryota root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 superkingdom Eukaryota root 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Wetlands 1.0 +superkingdom Eukaryota root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 superkingdom Eukaryota root:Host-associated:Microbial 1.0 superkingdom Eukaryota root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 superkingdom Eukaryota root:Host-associated:Algae:Brown Algae 1.0 @@ -860,20 +873,21 @@ superkingdom Eukaryota root:Environmental:Aquatic:Thermal springs:Near-boiling ( superkingdom Eukaryota root:Host-associated:Microbial:Bacteria 1.0 superkingdom Eukaryota root:Environmental:Aquatic:Marine:Oil seeps 1.0 superkingdom Eukaryota root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 +superkingdom Eukaryota root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 superkingdom Eukaryota root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lake 15.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Pond 4.0 -superkingdom Archaea root:Environmental:Aquatic:Freshwater:Sediment 23.0 -superkingdom Archaea root:Host-associated:Mammals:Digestive system:Fecal 38.0 +superkingdom Archaea root:Environmental:Aquatic:Freshwater:Sediment 24.0 +superkingdom Archaea root:Host-associated:Mammals:Digestive system:Fecal 40.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Oral:Saliva 7.0 superkingdom Archaea root:Host-associated:Birds:Digestive system:Fecal 3.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -superkingdom Archaea root:Host-associated:Human:Digestive system:Large intestine:Fecal 100.0 -superkingdom Archaea root:Environmental:Aquatic:Marine 278.0 +superkingdom Archaea root:Host-associated:Human:Digestive system:Large intestine:Fecal 108.0 +superkingdom Archaea root:Environmental:Aquatic:Marine 294.0 superkingdom Archaea root:Host-associated:Fish 3.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic:Sediment 12.0 -superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic 69.0 -superkingdom Archaea root:Host-associated:Mammals:Digestive system 26.0 +superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic 72.0 +superkingdom Archaea root:Host-associated:Mammals:Digestive system 28.0 superkingdom Archaea root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 24.0 superkingdom Archaea root:Environmental:Terrestrial:Geologic 1.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Forest soil 5.0 @@ -885,35 +899,38 @@ superkingdom Archaea root:Environmental:Aquatic:Estuary:Sediment 17.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Large intestine 10.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Agricultural 16.0 superkingdom Archaea root:Engineered:Bioreactor 53.0 -superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lotic:Sediment 27.0 superkingdom Archaea root:Engineered:Wastewater:Activated Sludge 61.0 superkingdom Archaea root:Host-associated:Human:Skin 16.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Permafrost 6.0 -superkingdom Archaea root:Mixed 32.0 +superkingdom Archaea root:Mixed 34.0 superkingdom Archaea root:Host-associated:Mammals 13.0 superkingdom Archaea root:Host-associated:Amphibia 3.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Intestine 3.0 -superkingdom Archaea root:Engineered:Food production:Fermented beverages 7.0 +superkingdom Archaea root:Engineered:Food production:Fermented beverages 8.0 superkingdom Archaea root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 superkingdom Archaea root:Engineered:Wastewater 15.0 superkingdom Archaea root:Host-associated:Human:Reproductive system:Vagina 6.0 -superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 44.0 -superkingdom Archaea root:Host-associated:Human:Digestive system:Oral 26.0 +superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 47.0 +superkingdom Archaea root:Host-associated:Human:Digestive system:Oral 27.0 superkingdom Archaea root:Engineered:Food production:Dairy products 1.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Contaminated 5.0 superkingdom Archaea root:Host-associated:Plants:Phylloplane 2.0 -superkingdom Archaea root:Host-associated:Plants:Rhizosphere 40.0 -superkingdom Archaea root:Environmental:Aquatic:Marine:Coastal:Sediment 23.0 -superkingdom Archaea root:Environmental:Terrestrial:Soil 58.0 -superkingdom Archaea root:Environmental:Aquatic:Marine:Sediment 146.0 -superkingdom Archaea root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +superkingdom Archaea root:Host-associated:Plants:Rhizosphere 42.0 +superkingdom Archaea root:Environmental:Aquatic:Marine:Coastal:Sediment 24.0 +superkingdom Archaea root:Environmental:Terrestrial:Soil 60.0 +superkingdom Archaea root:Environmental:Aquatic:Marine:Sediment 149.0 +superkingdom Archaea root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +superkingdom Archaea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lotic 2.0 superkingdom Archaea root:Environmental:Aquatic:Sediment 24.0 superkingdom Archaea root:Environmental:Aquatic 10.0 +superkingdom Archaea root:Host-associated:Mammals:Digestive system:Midgut 4.0 superkingdom Archaea root:Engineered:Biogas plant:Wet fermentation 7.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 superkingdom Archaea root:Host-associated:Porifera 15.0 +superkingdom Archaea root:Engineered:Lab enrichment 4.0 superkingdom Archaea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Wetlands 1.0 superkingdom Archaea root:Engineered:Lab Synthesis 1.0 @@ -921,6 +938,7 @@ superkingdom Archaea root:Environmental:Terrestrial:Soil:Grasslands 5.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 superkingdom Archaea root:Host-associated:Birds:Digestive system:Ceca 2.0 superkingdom Archaea root:Host-associated:Mammals:Digestive system:Stomach 1.0 +superkingdom Archaea root:Host-associated:Plants:Rhizosphere:Soil 3.0 superkingdom Archaea root:Host-associated:Human:Digestive system 23.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater 5.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 5.0 @@ -934,10 +952,10 @@ superkingdom Archaea root:Host-associated:Human:Respiratory system:Pulmonary sys superkingdom Archaea root:Environmental:Aquatic:Freshwater:Drinking water 2.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Desert 2.0 superkingdom Archaea root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -superkingdom Archaea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 +superkingdom Archaea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 11.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 6.0 -superkingdom Archaea root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -superkingdom Archaea root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +superkingdom Archaea root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +superkingdom Archaea root:Host-associated:Arthropoda:Digestive system:Gut 2.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Hydrothermal vents 9.0 superkingdom Archaea root:Engineered:Lab enrichment:Defined media 11.0 superkingdom Archaea root:Host-associated:Plants:Root 5.0 @@ -947,7 +965,6 @@ superkingdom Archaea root:Environmental:Terrestrial:Deep subsurface 5.0 superkingdom Archaea root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 3.0 superkingdom Archaea root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 20.0 -superkingdom Archaea root:Host-associated:Plants:Rhizosphere:Soil 2.0 superkingdom Archaea root:Host-associated:Mammals:Digestive system:Large intestine 7.0 superkingdom Archaea root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lentic 2.0 @@ -961,8 +978,7 @@ superkingdom Archaea root:Engineered:Wastewater:Industrial wastewater 5.0 superkingdom Archaea root:Engineered:Modeled 1.0 superkingdom Archaea root:Host-associated:Insecta:Digestive system 5.0 superkingdom Archaea root:Host-associated:Mollusca 2.0 -superkingdom Archaea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -superkingdom Archaea root:Host-associated:Fish:Digestive system 2.0 +superkingdom Archaea root:Host-associated:Fish:Digestive system 3.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Mine 1.0 superkingdom Archaea root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -972,22 +988,23 @@ superkingdom Archaea root:Host-associated:Mammals:Respiratory system:Pulmonary s superkingdom Archaea root:Environmental:Aquatic:Marine:Brackish 10.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Clay 2.0 superkingdom Archaea root:Host-associated:Fish:Digestive system:Foregut 1.0 -superkingdom Archaea root:Engineered:Bioreactor:Continuous culture 5.0 +superkingdom Archaea root:Engineered:Bioreactor:Continuous culture 6.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 superkingdom Archaea root:Host-associated:Human:Reproductive system:Female 1.0 superkingdom Archaea root:Engineered:Solid waste 1.0 superkingdom Archaea root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 -superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +superkingdom Archaea root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 superkingdom Archaea root:Environmental:Aquatic:Thermal springs:Sediment 4.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater 4.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 -superkingdom Archaea root:Environmental:Aquatic:Marine:Marginal Sea 7.0 +superkingdom Archaea root:Environmental:Aquatic:Marine:Marginal Sea 8.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Pelagic 13.0 -superkingdom Archaea root:Engineered:Wastewater:Water and sludge 7.0 -superkingdom Archaea root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +superkingdom Archaea root:Engineered:Wastewater:Water and sludge 8.0 +superkingdom Archaea root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +superkingdom Archaea root:Host-associated:Invertebrates:Cnidaria:Coral 12.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 superkingdom Archaea root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 superkingdom Archaea root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -996,17 +1013,16 @@ superkingdom Archaea root:Host-associated:Mammals:Gastrointestinal tract 4.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 superkingdom Archaea root:Host-associated:Reptile:Oral cavity 1.0 -superkingdom Archaea root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 +superkingdom Archaea root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Ice 2.0 superkingdom Archaea root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Crop 2.0 superkingdom Archaea root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 superkingdom Archaea root:Host-associated:Fish:Digestive system:Intestine 2.0 -superkingdom Archaea root:Host-associated:Insecta 5.0 +superkingdom Archaea root:Host-associated:Insecta 6.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 superkingdom Archaea root:Engineered:Built environment 7.0 superkingdom Archaea root:Host-associated:Birds:Digestive system 5.0 -superkingdom Archaea root:Engineered:Lab enrichment 4.0 superkingdom Archaea root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -1033,12 +1049,12 @@ superkingdom Archaea root:Host-associated:Fish:Skin 1.0 superkingdom Archaea root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 superkingdom Archaea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -superkingdom Archaea root:Host-associated:Mammals:Digestive system:Midgut 1.0 +superkingdom Archaea root:Host-associated:Plants:Rhizoplane:Soil 1.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Storm water 1.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 superkingdom Archaea root:Host-associated:Arthropoda 2.0 superkingdom Archaea root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -superkingdom Archaea root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +superkingdom Archaea root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 superkingdom Archaea root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 superkingdom Archaea root:Host-associated:Fungi 1.0 superkingdom Archaea root:Engineered:Bioremediation 1.0 @@ -1048,7 +1064,7 @@ superkingdom Archaea root:Host-associated:Mammals:Digestive system:Oral cavity:B superkingdom Archaea root:Engineered:Bioremediation:Hydrocarbon 1.0 superkingdom Archaea root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 superkingdom Archaea root:Engineered:Biotransformation 1.0 -superkingdom Archaea root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +superkingdom Archaea root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 superkingdom Archaea root:Host-associated:Mammals:Skin 3.0 superkingdom Archaea root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 superkingdom Archaea root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 @@ -1078,63 +1094,67 @@ superkingdom Archaea root:Engineered:Wastewater:Industrial wastewater:Mine water superkingdom Archaea root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Lake 13.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Pond 4.0 -kingdom Metazoa root:Environmental:Aquatic:Freshwater:Sediment 17.0 -kingdom Metazoa root:Host-associated:Mammals:Digestive system:Fecal 25.0 -kingdom Metazoa root:Host-associated:Human:Digestive system:Oral:Saliva 6.0 +kingdom Metazoa root:Environmental:Aquatic:Freshwater:Sediment 18.0 +kingdom Metazoa root:Host-associated:Mammals:Digestive system:Fecal 26.0 +kingdom Metazoa root:Host-associated:Human:Digestive system:Oral:Saliva 7.0 kingdom Metazoa root:Host-associated:Birds:Digestive system:Fecal 2.0 kingdom Metazoa root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -kingdom Metazoa root:Host-associated:Human:Digestive system:Large intestine:Fecal 73.0 -kingdom Metazoa root:Environmental:Aquatic:Marine 233.0 +kingdom Metazoa root:Host-associated:Human:Digestive system:Large intestine:Fecal 77.0 +kingdom Metazoa root:Environmental:Aquatic:Marine 241.0 kingdom Metazoa root:Host-associated:Fish 2.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic 66.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic 69.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system 14.0 kingdom Metazoa root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 7.0 kingdom Metazoa root:Environmental:Terrestrial:Geologic 1.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Forest soil 8.0 kingdom Metazoa root:Environmental:Aquatic:Lentic:Brackish 2.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 9.0 kingdom Metazoa root:Host-associated:Human 11.0 kingdom Metazoa root:Host-associated:Plants 36.0 kingdom Metazoa root:Environmental:Aquatic:Estuary:Sediment 12.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Large intestine 8.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Agricultural 6.0 kingdom Metazoa root:Engineered:Bioreactor 32.0 -kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 kingdom Metazoa root:Engineered:Wastewater:Activated Sludge 46.0 kingdom Metazoa root:Host-associated:Human:Skin 15.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Permafrost 3.0 -kingdom Metazoa root:Mixed 22.0 -kingdom Metazoa root:Host-associated:Mammals 17.0 +kingdom Metazoa root:Mixed 24.0 +kingdom Metazoa root:Host-associated:Mammals 18.0 kingdom Metazoa root:Host-associated:Amphibia 3.0 -kingdom Metazoa root:Host-associated:Human:Digestive system:Intestine 2.0 -kingdom Metazoa root:Engineered:Food production:Fermented beverages 9.0 +kingdom Metazoa root:Host-associated:Human:Digestive system:Intestine 3.0 +kingdom Metazoa root:Engineered:Food production:Fermented beverages 10.0 kingdom Metazoa root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 kingdom Metazoa root:Engineered:Wastewater 14.0 kingdom Metazoa root:Host-associated:Human:Reproductive system:Vagina 7.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 47.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 50.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Oral 22.0 -kingdom Metazoa root:Engineered:Food production:Dairy products 2.0 +kingdom Metazoa root:Engineered:Food production:Dairy products 4.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Contaminated 4.0 kingdom Metazoa root:Host-associated:Plants:Phylloplane 3.0 -kingdom Metazoa root:Host-associated:Plants:Rhizosphere 37.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Coastal:Sediment 16.0 -kingdom Metazoa root:Environmental:Terrestrial:Soil 40.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Sediment 93.0 +kingdom Metazoa root:Host-associated:Plants:Rhizosphere 38.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Coastal:Sediment 17.0 +kingdom Metazoa root:Environmental:Terrestrial:Soil 43.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Sediment 96.0 kingdom Metazoa root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +kingdom Metazoa root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Lotic 2.0 kingdom Metazoa root:Environmental:Aquatic:Sediment 8.0 kingdom Metazoa root:Environmental:Aquatic 8.0 +kingdom Metazoa root:Host-associated:Mammals:Digestive system:Midgut 3.0 kingdom Metazoa root:Engineered:Biogas plant:Wet fermentation 2.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 kingdom Metazoa root:Host-associated:Porifera 14.0 +kingdom Metazoa root:Engineered:Lab enrichment 2.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Wetlands 1.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Grasslands 4.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 kingdom Metazoa root:Host-associated:Birds:Digestive system:Ceca 3.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Stomach 1.0 +kingdom Metazoa root:Host-associated:Plants:Rhizosphere:Soil 4.0 kingdom Metazoa root:Host-associated:Human:Digestive system 25.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater 6.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -1146,21 +1166,20 @@ kingdom Metazoa root:Engineered:Solid waste:Composting 10.0 kingdom Metazoa root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 5.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Drinking water 3.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Desert 1.0 -kingdom Metazoa root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 +kingdom Metazoa root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 kingdom Metazoa root:Host-associated:Algae:Red algae 6.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 -kingdom Metazoa root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +kingdom Metazoa root:Host-associated:Arthropoda:Digestive system:Gut 3.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 kingdom Metazoa root:Engineered:Lab enrichment:Defined media 2.0 -kingdom Metazoa root:Host-associated:Plants:Root 7.0 +kingdom Metazoa root:Host-associated:Plants:Root 8.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oil-contaminated sediment 6.0 kingdom Metazoa root:Engineered:Food production 4.0 kingdom Metazoa root:Environmental:Terrestrial:Deep subsurface 4.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Neritic zone 1.0 kingdom Metazoa root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 4.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Lentic:Sediment 9.0 -kingdom Metazoa root:Host-associated:Plants:Rhizosphere:Soil 3.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Large intestine 8.0 kingdom Metazoa root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 4.0 @@ -1174,7 +1193,6 @@ kingdom Metazoa root:Engineered:Modeled 1.0 kingdom Metazoa root:Host-associated:Insecta:Digestive system 6.0 kingdom Metazoa root:Host-associated 2.0 kingdom Metazoa root:Host-associated:Mollusca 4.0 -kingdom Metazoa root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 kingdom Metazoa root:Host-associated:Fish:Digestive system 1.0 kingdom Metazoa root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -1190,12 +1208,13 @@ kingdom Metazoa root:Host-associated:Human:Reproductive system:Female 1.0 kingdom Metazoa root:Environmental:Aquatic:Thermal springs:Sediment 1.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater 4.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -kingdom Metazoa root:Environmental:Aquatic:Marine:Marginal Sea 6.0 +kingdom Metazoa root:Environmental:Aquatic:Marine:Marginal Sea 7.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Pelagic 11.0 -kingdom Metazoa root:Engineered:Wastewater:Water and sludge 6.0 -kingdom Metazoa root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +kingdom Metazoa root:Engineered:Wastewater:Water and sludge 8.0 +kingdom Metazoa root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +kingdom Metazoa root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone 1.0 kingdom Metazoa root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -1204,16 +1223,15 @@ kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage kingdom Metazoa root:Host-associated:Mammals:Gastrointestinal tract 2.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic:Benthic 5.0 -kingdom Metazoa root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Ice 1.0 kingdom Metazoa root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Crop 2.0 kingdom Metazoa root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 kingdom Metazoa root:Host-associated:Fish:Digestive system:Intestine 2.0 -kingdom Metazoa root:Host-associated:Insecta 6.0 +kingdom Metazoa root:Host-associated:Insecta 7.0 +kingdom Metazoa root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 kingdom Metazoa root:Engineered:Built environment 10.0 kingdom Metazoa root:Host-associated:Birds:Digestive system 6.0 -kingdom Metazoa root:Engineered:Lab enrichment 2.0 kingdom Metazoa root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -1236,20 +1254,21 @@ kingdom Metazoa root:Host-associated:Fish:Skin 2.0 kingdom Metazoa root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 kingdom Metazoa root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -kingdom Metazoa root:Host-associated:Mammals:Digestive system:Midgut 1.0 +kingdom Metazoa root:Host-associated:Plants:Rhizoplane:Soil 1.0 kingdom Metazoa root:Environmental:Aquatic:Freshwater:Storm water 1.0 kingdom Metazoa root:Environmental:Air 1.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 kingdom Metazoa root:Host-associated:Arthropoda 3.0 -kingdom Metazoa root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +kingdom Metazoa root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 kingdom Metazoa root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 -kingdom Metazoa root:Host-associated:Fungi 1.0 +kingdom Metazoa root:Host-associated:Fungi 2.0 kingdom Metazoa root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 kingdom Metazoa root:Host-associated:Human:Respiratory system 4.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 kingdom Metazoa root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 kingdom Metazoa root:Host-associated:Mammals:Skin 3.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +kingdom Metazoa root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 kingdom Metazoa root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 kingdom Metazoa root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -1263,11 +1282,13 @@ kingdom Metazoa root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial m kingdom Metazoa root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 kingdom Metazoa root 1.0 +kingdom Metazoa root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Metazoa root:Host-associated:Microbial 1.0 kingdom Metazoa root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 kingdom Metazoa root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 kingdom Metazoa root:Host-associated:Microbial:Bacteria 1.0 kingdom Metazoa root:Environmental:Aquatic:Marine:Oil seeps 1.0 +kingdom Metazoa root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 kingdom Metazoa root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Lake 8.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Pond 4.0 @@ -1276,11 +1297,11 @@ kingdom Fungi root:Host-associated:Mammals:Digestive system:Fecal 17.0 kingdom Fungi root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 kingdom Fungi root:Host-associated:Birds:Digestive system:Fecal 2.0 kingdom Fungi root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -kingdom Fungi root:Host-associated:Human:Digestive system:Large intestine:Fecal 80.0 -kingdom Fungi root:Environmental:Aquatic:Marine 200.0 +kingdom Fungi root:Host-associated:Human:Digestive system:Large intestine:Fecal 87.0 +kingdom Fungi root:Environmental:Aquatic:Marine 207.0 kingdom Fungi root:Host-associated:Fish 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 -kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic 58.0 +kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic 61.0 kingdom Fungi root:Host-associated:Mammals:Digestive system 14.0 kingdom Fungi root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 6.0 kingdom Fungi root:Environmental:Terrestrial:Geologic 1.0 @@ -1288,17 +1309,17 @@ kingdom Fungi root:Environmental:Terrestrial:Soil:Forest soil 8.0 kingdom Fungi root:Environmental:Aquatic:Lentic:Brackish 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 6.0 kingdom Fungi root:Host-associated:Human 8.0 -kingdom Fungi root:Host-associated:Plants 53.0 +kingdom Fungi root:Host-associated:Plants 54.0 kingdom Fungi root:Environmental:Aquatic:Estuary:Sediment 9.0 kingdom Fungi root:Host-associated:Human:Digestive system:Large intestine 8.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Agricultural 8.0 kingdom Fungi root:Engineered:Bioreactor 40.0 -kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 kingdom Fungi root:Engineered:Wastewater:Activated Sludge 40.0 kingdom Fungi root:Host-associated:Human:Skin 19.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Permafrost 3.0 -kingdom Fungi root:Mixed 21.0 +kingdom Fungi root:Mixed 23.0 kingdom Fungi root:Host-associated:Mammals 13.0 kingdom Fungi root:Host-associated:Amphibia 3.0 kingdom Fungi root:Host-associated:Human:Digestive system:Intestine 2.0 @@ -1306,28 +1327,32 @@ kingdom Fungi root:Engineered:Food production:Fermented beverages 9.0 kingdom Fungi root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 kingdom Fungi root:Engineered:Wastewater 15.0 kingdom Fungi root:Host-associated:Human:Reproductive system:Vagina 6.0 -kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 33.0 +kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 36.0 kingdom Fungi root:Host-associated:Human:Digestive system:Oral 18.0 -kingdom Fungi root:Engineered:Food production:Dairy products 2.0 +kingdom Fungi root:Engineered:Food production:Dairy products 3.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Contaminated 5.0 kingdom Fungi root:Host-associated:Plants:Phylloplane 8.0 -kingdom Fungi root:Host-associated:Plants:Rhizosphere 38.0 +kingdom Fungi root:Host-associated:Plants:Rhizosphere 39.0 kingdom Fungi root:Environmental:Aquatic:Marine:Coastal:Sediment 12.0 -kingdom Fungi root:Environmental:Terrestrial:Soil 37.0 -kingdom Fungi root:Environmental:Aquatic:Marine:Sediment 87.0 -kingdom Fungi root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +kingdom Fungi root:Environmental:Terrestrial:Soil 41.0 +kingdom Fungi root:Environmental:Aquatic:Marine:Sediment 89.0 +kingdom Fungi root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +kingdom Fungi root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Lotic 2.0 kingdom Fungi root:Environmental:Aquatic:Sediment 11.0 kingdom Fungi root:Environmental:Aquatic 8.0 +kingdom Fungi root:Host-associated:Mammals:Digestive system:Midgut 2.0 kingdom Fungi root:Engineered:Biogas plant:Wet fermentation 4.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 kingdom Fungi root:Host-associated:Porifera 10.0 +kingdom Fungi root:Engineered:Lab enrichment 3.0 kingdom Fungi root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Wetlands 1.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Grasslands 4.0 kingdom Fungi root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 kingdom Fungi root:Host-associated:Birds:Digestive system:Ceca 3.0 kingdom Fungi root:Host-associated:Mammals:Digestive system:Stomach 1.0 +kingdom Fungi root:Host-associated:Plants:Rhizosphere:Soil 4.0 kingdom Fungi root:Host-associated:Human:Digestive system 21.0 kingdom Fungi root:Environmental:Aquatic:Freshwater 6.0 kingdom Fungi root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -1340,14 +1365,14 @@ kingdom Fungi root:Host-associated:Human:Respiratory system:Pulmonary system:Spu kingdom Fungi root:Environmental:Aquatic:Freshwater:Drinking water 2.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Desert 1.0 kingdom Fungi root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -kingdom Fungi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 +kingdom Fungi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 kingdom Fungi root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 kingdom Fungi root:Host-associated:Algae:Red algae 4.0 -kingdom Fungi root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 -kingdom Fungi root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +kingdom Fungi root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +kingdom Fungi root:Host-associated:Arthropoda:Digestive system:Gut 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Hydrothermal vents 6.0 kingdom Fungi root:Engineered:Lab enrichment:Defined media 2.0 -kingdom Fungi root:Host-associated:Plants:Root 9.0 +kingdom Fungi root:Host-associated:Plants:Root 10.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oil-contaminated sediment 5.0 kingdom Fungi root:Engineered:Food production 5.0 kingdom Fungi root:Environmental:Terrestrial:Deep subsurface 4.0 @@ -1355,7 +1380,6 @@ kingdom Fungi root:Environmental:Aquatic:Marine:Neritic zone 1.0 kingdom Fungi root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 kingdom Fungi root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Lentic:Sediment 11.0 -kingdom Fungi root:Host-associated:Plants:Rhizosphere:Soil 3.0 kingdom Fungi root:Host-associated:Mammals:Digestive system:Large intestine 4.0 kingdom Fungi root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 @@ -1370,7 +1394,6 @@ kingdom Fungi root:Engineered:Modeled 1.0 kingdom Fungi root:Host-associated:Insecta:Digestive system 6.0 kingdom Fungi root:Host-associated 1.0 kingdom Fungi root:Host-associated:Mollusca 1.0 -kingdom Fungi root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 kingdom Fungi root:Host-associated:Fish:Digestive system 2.0 kingdom Fungi root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -1383,15 +1406,17 @@ kingdom Fungi root:Engineered:Bioreactor:Continuous culture 4.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 kingdom Fungi root:Host-associated:Human:Reproductive system:Female 1.0 kingdom Fungi root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 +kingdom Fungi root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 kingdom Fungi root:Environmental:Aquatic:Thermal springs:Sediment 1.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater 2.0 +kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater 3.0 kingdom Fungi root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -kingdom Fungi root:Environmental:Aquatic:Marine:Marginal Sea 4.0 +kingdom Fungi root:Environmental:Aquatic:Marine:Marginal Sea 5.0 kingdom Fungi root:Environmental:Aquatic:Marine:Pelagic 10.0 -kingdom Fungi root:Engineered:Wastewater:Water and sludge 4.0 -kingdom Fungi root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +kingdom Fungi root:Engineered:Wastewater:Water and sludge 6.0 +kingdom Fungi root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +kingdom Fungi root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 kingdom Fungi root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone 1.0 kingdom Fungi root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -1400,17 +1425,16 @@ kingdom Fungi root:Host-associated:Mammals:Gastrointestinal tract 4.0 kingdom Fungi root:Engineered:Lab Synthesis:Genetic cross 1.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -kingdom Fungi root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Ice 1.0 kingdom Fungi root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Crop 2.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 kingdom Fungi root:Host-associated:Fish:Digestive system:Intestine 2.0 kingdom Fungi root:Host-associated:Insecta 6.0 +kingdom Fungi root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 kingdom Fungi root:Host-associated:Plants:Phylloplane:Endophytes 1.0 kingdom Fungi root:Engineered:Built environment 12.0 kingdom Fungi root:Host-associated:Birds:Digestive system 4.0 -kingdom Fungi root:Engineered:Lab enrichment 2.0 kingdom Fungi root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -1432,15 +1456,15 @@ kingdom Fungi root:Host-associated:Fish:Skin 1.0 kingdom Fungi root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 kingdom Fungi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -kingdom Fungi root:Host-associated:Mammals:Digestive system:Midgut 1.0 +kingdom Fungi root:Host-associated:Plants:Rhizoplane:Soil 1.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Storm water 1.0 kingdom Fungi root:Environmental:Air 1.0 kingdom Fungi root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 kingdom Fungi root:Host-associated:Arthropoda 3.0 kingdom Fungi root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -kingdom Fungi root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +kingdom Fungi root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 kingdom Fungi root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 -kingdom Fungi root:Host-associated:Fungi 1.0 +kingdom Fungi root:Host-associated:Fungi 2.0 kingdom Fungi root:Host-associated:Human:Respiratory system 1.0 kingdom Fungi root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 kingdom Fungi root:Engineered:Bioremediation:Hydrocarbon 1.0 @@ -1448,6 +1472,7 @@ kingdom Fungi root:Host-associated:Mammals:Digestive system:Large intestine:Cecu kingdom Fungi root:Engineered:Biotransformation 1.0 kingdom Fungi root:Host-associated:Mammals:Skin 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +kingdom Fungi root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 kingdom Fungi root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 kingdom Fungi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -1458,71 +1483,77 @@ kingdom Fungi root:Environmental:Terrestrial:Soil:Loam 2.0 kingdom Fungi root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 kingdom Fungi root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 kingdom Fungi root 1.0 +kingdom Fungi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Fungi root:Host-associated:Microbial 1.0 kingdom Fungi root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 kingdom Fungi root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 kingdom Fungi root:Host-associated:Microbial:Bacteria 1.0 +kingdom Fungi root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 kingdom Fungi root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lake 8.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Pond 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Sediment 19.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Fecal 38.0 -kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral:Saliva 8.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Fecal 40.0 +kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral:Saliva 9.0 kingdom Viridiplantae root:Host-associated:Birds:Digestive system:Fecal 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 kingdom Viridiplantae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -kingdom Viridiplantae root:Host-associated:Human:Digestive system:Large intestine:Fecal 90.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine 205.0 +kingdom Viridiplantae root:Host-associated:Human:Digestive system:Large intestine:Fecal 96.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine 211.0 kingdom Viridiplantae root:Host-associated:Fish 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic 60.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system 26.0 -kingdom Viridiplantae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 9.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic 63.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system 27.0 +kingdom Viridiplantae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 10.0 kingdom Viridiplantae root:Environmental:Terrestrial:Geologic 1.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Forest soil 8.0 kingdom Viridiplantae root:Environmental:Aquatic:Lentic:Brackish 2.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 10.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 kingdom Viridiplantae root:Host-associated:Human 9.0 -kingdom Viridiplantae root:Host-associated:Plants 65.0 +kingdom Viridiplantae root:Host-associated:Plants 66.0 kingdom Viridiplantae root:Environmental:Aquatic:Estuary:Sediment 8.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Large intestine 10.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Agricultural 13.0 kingdom Viridiplantae root:Engineered:Bioreactor 52.0 -kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 kingdom Viridiplantae root:Engineered:Wastewater:Activated Sludge 34.0 kingdom Viridiplantae root:Host-associated:Human:Skin 22.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Permafrost 4.0 -kingdom Viridiplantae root:Mixed 24.0 -kingdom Viridiplantae root:Host-associated:Mammals 15.0 +kingdom Viridiplantae root:Mixed 26.0 +kingdom Viridiplantae root:Host-associated:Mammals 16.0 kingdom Viridiplantae root:Host-associated:Amphibia 3.0 -kingdom Viridiplantae root:Host-associated:Human:Digestive system:Intestine 2.0 -kingdom Viridiplantae root:Engineered:Food production:Fermented beverages 9.0 +kingdom Viridiplantae root:Host-associated:Human:Digestive system:Intestine 3.0 +kingdom Viridiplantae root:Engineered:Food production:Fermented beverages 10.0 kingdom Viridiplantae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 kingdom Viridiplantae root:Engineered:Wastewater 13.0 kingdom Viridiplantae root:Host-associated:Human:Reproductive system:Vagina 3.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 22.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 25.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral 25.0 -kingdom Viridiplantae root:Engineered:Food production:Dairy products 4.0 +kingdom Viridiplantae root:Engineered:Food production:Dairy products 5.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Contaminated 5.0 kingdom Viridiplantae root:Host-associated:Plants:Phylloplane 9.0 -kingdom Viridiplantae root:Host-associated:Plants:Rhizosphere 33.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 -kingdom Viridiplantae root:Environmental:Terrestrial:Soil 38.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Sediment 80.0 -kingdom Viridiplantae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +kingdom Viridiplantae root:Host-associated:Plants:Rhizosphere 34.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Coastal:Sediment 12.0 +kingdom Viridiplantae root:Environmental:Terrestrial:Soil 42.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Sediment 82.0 +kingdom Viridiplantae root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +kingdom Viridiplantae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lotic 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Sediment 10.0 kingdom Viridiplantae root:Environmental:Aquatic 7.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Midgut 3.0 kingdom Viridiplantae root:Engineered:Biogas plant:Wet fermentation 7.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 kingdom Viridiplantae root:Host-associated:Porifera 10.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 +kingdom Viridiplantae root:Engineered:Lab enrichment 1.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Wetlands 1.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Grasslands 5.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 kingdom Viridiplantae root:Host-associated:Birds:Digestive system:Ceca 3.0 kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +kingdom Viridiplantae root:Host-associated:Plants:Rhizosphere:Soil 5.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system 26.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater 5.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -1534,22 +1565,21 @@ kingdom Viridiplantae root:Engineered:Solid waste:Composting 10.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Desert 1.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 11.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 kingdom Viridiplantae root:Host-associated:Algae:Red algae 4.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 -kingdom Viridiplantae root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +kingdom Viridiplantae root:Host-associated:Arthropoda:Digestive system:Gut 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Hydrothermal vents 4.0 kingdom Viridiplantae root:Engineered:Lab enrichment:Defined media 3.0 -kingdom Viridiplantae root:Host-associated:Plants:Root 10.0 +kingdom Viridiplantae root:Host-associated:Plants:Root 11.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 kingdom Viridiplantae root:Engineered:Food production 6.0 kingdom Viridiplantae root:Environmental:Terrestrial:Deep subsurface 5.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Neritic zone 1.0 kingdom Viridiplantae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 8.0 -kingdom Viridiplantae root:Host-associated:Plants:Rhizosphere:Soil 3.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Large intestine 8.0 +kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Large intestine 9.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lentic 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 @@ -1563,8 +1593,7 @@ kingdom Viridiplantae root:Engineered:Modeled 1.0 kingdom Viridiplantae root:Host-associated:Insecta:Digestive system 7.0 kingdom Viridiplantae root:Host-associated 1.0 kingdom Viridiplantae root:Host-associated:Mollusca 3.0 -kingdom Viridiplantae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -kingdom Viridiplantae root:Host-associated:Fish:Digestive system 1.0 +kingdom Viridiplantae root:Host-associated:Fish:Digestive system 2.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Mine 1.0 kingdom Viridiplantae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -1578,14 +1607,16 @@ kingdom Viridiplantae root:Engineered:Bioreactor:Continuous culture 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 kingdom Viridiplantae root:Host-associated:Human:Reproductive system:Female 1.0 kingdom Viridiplantae root:Engineered:Solid waste 1.0 +kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -kingdom Viridiplantae root:Environmental:Aquatic:Marine:Marginal Sea 7.0 +kingdom Viridiplantae root:Environmental:Aquatic:Marine:Marginal Sea 8.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Pelagic 11.0 -kingdom Viridiplantae root:Engineered:Wastewater:Water and sludge 6.0 -kingdom Viridiplantae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +kingdom Viridiplantae root:Engineered:Wastewater:Water and sludge 8.0 +kingdom Viridiplantae root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +kingdom Viridiplantae root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 kingdom Viridiplantae root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -1595,17 +1626,17 @@ kingdom Viridiplantae root:Host-associated:Mammals:Gastrointestinal tract 5.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 kingdom Viridiplantae root:Host-associated:Reptile:Oral cavity 1.0 -kingdom Viridiplantae root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 +kingdom Viridiplantae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Ice 2.0 kingdom Viridiplantae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Crop 2.0 kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 kingdom Viridiplantae root:Host-associated:Fish:Digestive system:Intestine 4.0 -kingdom Viridiplantae root:Host-associated:Insecta 6.0 +kingdom Viridiplantae root:Host-associated:Insecta 7.0 +kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 kingdom Viridiplantae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -kingdom Viridiplantae root:Engineered:Built environment 12.0 +kingdom Viridiplantae root:Engineered:Built environment 13.0 kingdom Viridiplantae root:Host-associated:Birds:Digestive system 6.0 -kingdom Viridiplantae root:Engineered:Lab enrichment 1.0 kingdom Viridiplantae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -1628,15 +1659,15 @@ kingdom Viridiplantae root:Host-associated:Fish:Skin 1.0 kingdom Viridiplantae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 kingdom Viridiplantae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +kingdom Viridiplantae root:Host-associated:Plants:Rhizoplane:Soil 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Storm water 1.0 kingdom Viridiplantae root:Environmental:Air 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 kingdom Viridiplantae root:Host-associated:Arthropoda 3.0 kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +kingdom Viridiplantae root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 -kingdom Viridiplantae root:Host-associated:Fungi 1.0 +kingdom Viridiplantae root:Host-associated:Fungi 2.0 kingdom Viridiplantae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system 4.0 kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 @@ -1644,6 +1675,7 @@ kingdom Viridiplantae root:Engineered:Bioremediation:Hydrocarbon 1.0 kingdom Viridiplantae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 kingdom Viridiplantae root:Host-associated:Mammals:Skin 2.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +kingdom Viridiplantae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 kingdom Viridiplantae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 kingdom Viridiplantae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 @@ -1658,82 +1690,88 @@ kingdom Viridiplantae root:Environmental:Aquatic:Marine:Hydrothermal vents:Micro kingdom Viridiplantae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Wetlands 1.0 +kingdom Viridiplantae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Viridiplantae root:Host-associated:Microbial 1.0 kingdom Viridiplantae root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 kingdom Viridiplantae root:Host-associated:Algae:Brown Algae 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 kingdom Viridiplantae root:Host-associated:Microbial:Bacteria 1.0 kingdom Viridiplantae root:Environmental:Aquatic:Marine:Oil seeps 1.0 +kingdom Viridiplantae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 kingdom Viridiplantae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lake 44.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Pond 6.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Sediment 31.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Fecal 70.0 -phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Sediment 33.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Fecal 73.0 +phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 phylum Proteobacteria root:Host-associated:Birds:Digestive system:Fecal 13.0 phylum Proteobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Proteobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Proteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 217.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine 372.0 +phylum Proteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 228.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine 394.0 phylum Proteobacteria root:Host-associated:Fish 6.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 22.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic 86.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system 33.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic 89.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system 35.0 phylum Proteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 31.0 phylum Proteobacteria root:Environmental:Terrestrial:Geologic 3.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Forest soil 29.0 phylum Proteobacteria root:Environmental:Aquatic:Lentic:Brackish 19.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 22.0 -phylum Proteobacteria root:Host-associated:Human 23.0 -phylum Proteobacteria root:Host-associated:Plants 64.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 23.0 +phylum Proteobacteria root:Host-associated:Human 24.0 +phylum Proteobacteria root:Host-associated:Plants 66.0 phylum Proteobacteria root:Environmental:Aquatic:Estuary:Sediment 18.0 phylum Proteobacteria root:Engineered:Food production:Silage fermentation 1.0 -phylum Proteobacteria root:Host-associated:Human:Digestive system:Large intestine 17.0 +phylum Proteobacteria root:Host-associated:Human:Digestive system:Large intestine 18.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Agricultural 52.0 phylum Proteobacteria root:Engineered:Bioreactor 106.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 8.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 10.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 31.0 -phylum Proteobacteria root:Engineered:Wastewater:Activated Sludge 81.0 +phylum Proteobacteria root:Engineered:Wastewater:Activated Sludge 82.0 phylum Proteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Proteobacteria root:Host-associated:Human:Skin 30.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Permafrost 16.0 -phylum Proteobacteria root:Mixed 34.0 -phylum Proteobacteria root:Host-associated:Mammals 20.0 +phylum Proteobacteria root:Mixed 36.0 +phylum Proteobacteria root:Host-associated:Mammals 21.0 phylum Proteobacteria root:Host-associated:Amphibia 5.0 -phylum Proteobacteria root:Host-associated:Human:Digestive system:Intestine 4.0 -phylum Proteobacteria root:Engineered:Food production:Fermented beverages 14.0 +phylum Proteobacteria root:Host-associated:Human:Digestive system:Intestine 5.0 +phylum Proteobacteria root:Engineered:Food production:Fermented beverages 15.0 phylum Proteobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Proteobacteria root:Engineered:Wastewater 29.0 phylum Proteobacteria root:Host-associated:Human:Reproductive system:Vagina 16.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 61.0 -phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral 64.0 -phylum Proteobacteria root:Engineered:Food production:Dairy products 27.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 64.0 +phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral 65.0 +phylum Proteobacteria root:Engineered:Food production:Dairy products 29.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Contaminated 18.0 phylum Proteobacteria root:Host-associated:Plants:Phylloplane 13.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -phylum Proteobacteria root:Host-associated:Plants:Rhizosphere 66.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 31.0 +phylum Proteobacteria root:Host-associated:Plants:Rhizosphere 68.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 32.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Proteobacteria root:Environmental:Terrestrial:Soil 250.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Sediment 167.0 -phylum Proteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 +phylum Proteobacteria root:Environmental:Terrestrial:Soil 253.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Sediment 170.0 +phylum Proteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 14.0 +phylum Proteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 phylum Proteobacteria root:Environmental:Aquatic:Sediment 30.0 phylum Proteobacteria root:Environmental:Aquatic 14.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Midgut 6.0 phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 phylum Proteobacteria root:Engineered:Biogas plant:Wet fermentation 11.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 phylum Proteobacteria root:Host-associated:Porifera 20.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 30.0 +phylum Proteobacteria root:Engineered:Lab enrichment 11.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 31.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Wetlands 11.0 phylum Proteobacteria root:Engineered:Lab Synthesis 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Grasslands 18.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 phylum Proteobacteria root:Host-associated:Birds:Digestive system:Ceca 10.0 phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Proteobacteria root:Host-associated:Plants:Rhizosphere:Soil 33.0 phylum Proteobacteria root:Host-associated:Human:Digestive system 39.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater 17.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater 18.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 8.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 phylum Proteobacteria root:Environmental:Aquatic:Thermal springs 4.0 @@ -1745,11 +1783,11 @@ phylum Proteobacteria root:Host-associated:Human:Respiratory system:Pulmonary sy phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Desert 18.0 phylum Proteobacteria root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 62.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Proteobacteria root:Host-associated:Algae:Red algae 9.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 -phylum Proteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 7.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +phylum Proteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 8.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 13.0 phylum Proteobacteria root:Engineered:Lab enrichment:Defined media 13.0 phylum Proteobacteria root:Host-associated:Plants:Root 13.0 @@ -1760,10 +1798,9 @@ phylum Proteobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Proteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Proteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 11.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 24.0 -phylum Proteobacteria root:Host-associated:Plants:Rhizosphere:Soil 31.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 15.0 phylum Proteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -phylum Proteobacteria root:Engineered:Food production:Fermented seafood 2.0 +phylum Proteobacteria root:Engineered:Food production:Fermented seafood 3.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lentic 5.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 phylum Proteobacteria root:Environmental:Aquatic:Estuary 34.0 @@ -1775,12 +1812,11 @@ phylum Proteobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 phylum Proteobacteria root:Engineered:Wastewater:Industrial wastewater 17.0 phylum Proteobacteria root:Engineered:Modeled 5.0 -phylum Proteobacteria root:Host-associated:Insecta:Digestive system 11.0 +phylum Proteobacteria root:Host-associated:Insecta:Digestive system 12.0 phylum Proteobacteria root:Host-associated 12.0 phylum Proteobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Proteobacteria root:Host-associated:Mollusca 7.0 -phylum Proteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Proteobacteria root:Host-associated:Fish:Digestive system 2.0 +phylum Proteobacteria root:Host-associated:Fish:Digestive system 3.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Mine 4.0 phylum Proteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Sand 7.0 @@ -1791,22 +1827,23 @@ phylum Proteobacteria root:Environmental:Aquatic:Marine:Brackish 12.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Clay 5.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Crop:Agricultural land 4.0 phylum Proteobacteria root:Host-associated:Fish:Digestive system:Foregut 4.0 -phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture 15.0 +phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture 16.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 2.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 8.0 phylum Proteobacteria root:Host-associated:Human:Reproductive system:Female 2.0 phylum Proteobacteria root:Engineered:Solid waste 1.0 phylum Proteobacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 phylum Proteobacteria root:Environmental:Aquatic:Thermal springs:Sediment 7.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 8.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 20.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 22.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 -phylum Proteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 +phylum Proteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 7.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Pelagic 14.0 -phylum Proteobacteria root:Engineered:Wastewater:Water and sludge 24.0 -phylum Proteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Proteobacteria root:Engineered:Wastewater:Water and sludge 26.0 +phylum Proteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +phylum Proteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 12.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 phylum Proteobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 4.0 @@ -1820,18 +1857,17 @@ phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-cont phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 11.0 phylum Proteobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Proteobacteria root:Host-associated:Reptile:Oral cavity 1.0 -phylum Proteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 +phylum Proteobacteria root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 phylum Proteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 phylum Proteobacteria root:Host-associated:Fish:Digestive system:Intestine 4.0 -phylum Proteobacteria root:Host-associated:Insecta 14.0 +phylum Proteobacteria root:Host-associated:Insecta 15.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Proteobacteria root:Host-associated:Plants:Phylloplane:Endophytes 2.0 -phylum Proteobacteria root:Engineered:Built environment 14.0 +phylum Proteobacteria root:Engineered:Built environment 15.0 phylum Proteobacteria root:Host-associated:Birds:Digestive system 7.0 -phylum Proteobacteria root:Engineered:Lab enrichment 11.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Boreal forest 2.0 phylum Proteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 phylum Proteobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 @@ -1863,34 +1899,36 @@ phylum Proteobacteria root:Host-associated:Fish:Skin 3.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Proteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 7.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Midgut 3.0 +phylum Proteobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Proteobacteria root:Environmental:Air 3.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Proteobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Proteobacteria root:Host-associated:Arthropoda 4.0 phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +phylum Proteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 6.0 phylum Proteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 phylum Proteobacteria root:Host-associated:Fungi 1.0 phylum Proteobacteria root:Engineered:Bioremediation 3.0 phylum Proteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 phylum Proteobacteria root:Host-associated:Human:Respiratory system 4.0 phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Proteobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 2.0 phylum Proteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 phylum Proteobacteria root:Engineered:Bioremediation:Hydrocarbon 2.0 phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 phylum Proteobacteria root:Engineered:Biotransformation 4.0 phylum Proteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 -phylum Proteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Proteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Proteobacteria root:Host-associated:Mammals:Skin 3.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 -phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 phylum Proteobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Oil reservoir 1.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 2.0 phylum Proteobacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +phylum Proteobacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Soil:Mine drainage 1.0 phylum Proteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 @@ -1920,6 +1958,7 @@ phylum Proteobacteria root:Environmental:Terrestrial:Volcanic 3.0 phylum Proteobacteria root:Environmental:Aquatic:Lentic 2.0 phylum Proteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Proteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Proteobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Proteobacteria root:Host-associated:Protozoa 1.0 phylum Proteobacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -1941,79 +1980,83 @@ phylum Proteobacteria root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated phylum Proteobacteria root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 phylum Proteobacteria root:Environmental:Terrestrial:Agricultural field 1.0 phylum Proteobacteria root:Host-associated:Mammals:Milk 1.0 +phylum Proteobacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Proteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 phylum Proteobacteria root:Engineered:Solid waste:Solid animal waste 1.0 phylum Proteobacteria root:Host-associated:Annelida 1.0 -phylum Proteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Proteobacteria root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 phylum Proteobacteria root:Host-associated:Spiralia 1.0 phylum Proteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Proteobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lake 37.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Pond 6.0 -phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Sediment 26.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Fecal 62.0 -phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Sediment 28.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Fecal 64.0 +phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 phylum Actinobacteria root:Host-associated:Birds:Digestive system:Fecal 13.0 phylum Actinobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 5.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Actinobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 214.0 -phylum Actinobacteria root:Environmental:Aquatic:Marine 310.0 +phylum Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 225.0 +phylum Actinobacteria root:Environmental:Aquatic:Marine 324.0 phylum Actinobacteria root:Host-associated:Fish 6.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 21.0 -phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic 72.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system 30.0 +phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic 74.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system 32.0 phylum Actinobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 19.0 phylum Actinobacteria root:Environmental:Terrestrial:Geologic 3.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Forest soil 28.0 phylum Actinobacteria root:Environmental:Aquatic:Lentic:Brackish 2.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 10.0 -phylum Actinobacteria root:Host-associated:Human 23.0 -phylum Actinobacteria root:Host-associated:Plants 49.0 +phylum Actinobacteria root:Host-associated:Human 24.0 +phylum Actinobacteria root:Host-associated:Plants 50.0 phylum Actinobacteria root:Environmental:Aquatic:Estuary:Sediment 15.0 phylum Actinobacteria root:Engineered:Food production:Silage fermentation 1.0 -phylum Actinobacteria root:Host-associated:Human:Digestive system:Large intestine 16.0 +phylum Actinobacteria root:Host-associated:Human:Digestive system:Large intestine 17.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Agricultural 50.0 phylum Actinobacteria root:Engineered:Bioreactor 88.0 -phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 8.0 +phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 10.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 28.0 -phylum Actinobacteria root:Engineered:Wastewater:Activated Sludge 70.0 +phylum Actinobacteria root:Engineered:Wastewater:Activated Sludge 71.0 phylum Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Actinobacteria root:Host-associated:Human:Skin 30.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Permafrost 16.0 -phylum Actinobacteria root:Mixed 32.0 +phylum Actinobacteria root:Mixed 34.0 phylum Actinobacteria root:Host-associated:Mammals 18.0 phylum Actinobacteria root:Host-associated:Amphibia 5.0 -phylum Actinobacteria root:Host-associated:Human:Digestive system:Intestine 3.0 -phylum Actinobacteria root:Engineered:Food production:Fermented beverages 13.0 +phylum Actinobacteria root:Host-associated:Human:Digestive system:Intestine 4.0 +phylum Actinobacteria root:Engineered:Food production:Fermented beverages 14.0 phylum Actinobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Actinobacteria root:Engineered:Wastewater 26.0 phylum Actinobacteria root:Host-associated:Human:Reproductive system:Vagina 16.0 -phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 60.0 -phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral 64.0 -phylum Actinobacteria root:Engineered:Food production:Dairy products 26.0 +phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 63.0 +phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral 65.0 +phylum Actinobacteria root:Engineered:Food production:Dairy products 27.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Contaminated 17.0 phylum Actinobacteria root:Host-associated:Plants:Phylloplane 11.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -phylum Actinobacteria root:Host-associated:Plants:Rhizosphere 65.0 +phylum Actinobacteria root:Host-associated:Plants:Rhizosphere 67.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 28.0 -phylum Actinobacteria root:Environmental:Terrestrial:Soil 235.0 -phylum Actinobacteria root:Environmental:Aquatic:Marine:Sediment 131.0 -phylum Actinobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 10.0 +phylum Actinobacteria root:Environmental:Terrestrial:Soil 238.0 +phylum Actinobacteria root:Environmental:Aquatic:Marine:Sediment 133.0 +phylum Actinobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 +phylum Actinobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 phylum Actinobacteria root:Environmental:Aquatic:Sediment 25.0 phylum Actinobacteria root:Environmental:Aquatic 13.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Midgut 5.0 phylum Actinobacteria root:Engineered:Biogas plant:Wet fermentation 8.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 phylum Actinobacteria root:Host-associated:Porifera 20.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 19.0 +phylum Actinobacteria root:Engineered:Lab enrichment 11.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 20.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Wetlands 10.0 phylum Actinobacteria root:Engineered:Lab Synthesis 1.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Grasslands 18.0 phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 phylum Actinobacteria root:Host-associated:Birds:Digestive system:Ceca 6.0 phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Actinobacteria root:Host-associated:Plants:Rhizosphere:Soil 31.0 phylum Actinobacteria root:Host-associated:Human:Digestive system 37.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater 12.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 6.0 @@ -2026,11 +2069,11 @@ phylum Actinobacteria root:Host-associated:Human:Respiratory system:Pulmonary sy phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Desert 17.0 phylum Actinobacteria root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 54.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 55.0 phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Actinobacteria root:Host-associated:Algae:Red algae 9.0 phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -phylum Actinobacteria root:Host-associated:Arthropoda:Digestive system:Gut 6.0 +phylum Actinobacteria root:Host-associated:Arthropoda:Digestive system:Gut 7.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 9.0 phylum Actinobacteria root:Engineered:Lab enrichment:Defined media 12.0 phylum Actinobacteria root:Host-associated:Plants:Root 11.0 @@ -2040,10 +2083,9 @@ phylum Actinobacteria root:Environmental:Terrestrial:Deep subsurface 4.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Actinobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 8.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 19.0 -phylum Actinobacteria root:Host-associated:Plants:Rhizosphere:Soil 29.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine 13.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine 14.0 phylum Actinobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -phylum Actinobacteria root:Engineered:Food production:Fermented seafood 2.0 +phylum Actinobacteria root:Engineered:Food production:Fermented seafood 3.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lentic 5.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 phylum Actinobacteria root:Environmental:Aquatic:Estuary 34.0 @@ -2055,12 +2097,11 @@ phylum Actinobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 phylum Actinobacteria root:Engineered:Wastewater:Industrial wastewater 14.0 phylum Actinobacteria root:Engineered:Modeled 5.0 -phylum Actinobacteria root:Host-associated:Insecta:Digestive system 8.0 +phylum Actinobacteria root:Host-associated:Insecta:Digestive system 9.0 phylum Actinobacteria root:Host-associated 9.0 phylum Actinobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Actinobacteria root:Host-associated:Mollusca 4.0 -phylum Actinobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Actinobacteria root:Host-associated:Fish:Digestive system 1.0 +phylum Actinobacteria root:Host-associated:Fish:Digestive system 2.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Mine 4.0 phylum Actinobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Sand 5.0 @@ -2076,16 +2117,17 @@ phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Drinking water:Deliv phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 phylum Actinobacteria root:Host-associated:Human:Reproductive system:Female 2.0 phylum Actinobacteria root:Engineered:Solid waste 1.0 -phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 phylum Actinobacteria root:Environmental:Aquatic:Thermal springs:Sediment 6.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 6.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater 19.0 +phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater 20.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -phylum Actinobacteria root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +phylum Actinobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Pelagic 14.0 -phylum Actinobacteria root:Engineered:Wastewater:Water and sludge 20.0 -phylum Actinobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Actinobacteria root:Engineered:Wastewater:Water and sludge 22.0 +phylum Actinobacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +phylum Actinobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 phylum Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 phylum Actinobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -2098,18 +2140,17 @@ phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-cont phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 phylum Actinobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Actinobacteria root:Host-associated:Reptile:Oral cavity 1.0 -phylum Actinobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 9.0 +phylum Actinobacteria root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 phylum Actinobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 phylum Actinobacteria root:Host-associated:Fish:Digestive system:Intestine 4.0 -phylum Actinobacteria root:Host-associated:Insecta 13.0 +phylum Actinobacteria root:Host-associated:Insecta 14.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Actinobacteria root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Actinobacteria root:Engineered:Built environment 14.0 +phylum Actinobacteria root:Engineered:Built environment 15.0 phylum Actinobacteria root:Host-associated:Birds:Digestive system 7.0 -phylum Actinobacteria root:Engineered:Lab enrichment 11.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Actinobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Actinobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 @@ -2140,33 +2181,35 @@ phylum Actinobacteria root:Host-associated:Fish:Skin 3.0 phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 6.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Midgut 3.0 +phylum Actinobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Actinobacteria root:Environmental:Air 1.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Actinobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Actinobacteria root:Host-associated:Arthropoda 4.0 phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +phylum Actinobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 phylum Actinobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 phylum Actinobacteria root:Host-associated:Fungi 1.0 phylum Actinobacteria root:Engineered:Bioremediation 3.0 phylum Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 phylum Actinobacteria root:Host-associated:Human:Respiratory system 4.0 phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Actinobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 2.0 phylum Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 phylum Actinobacteria root:Engineered:Bioremediation:Hydrocarbon 2.0 phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 phylum Actinobacteria root:Engineered:Biotransformation 3.0 phylum Actinobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -phylum Actinobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Actinobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Actinobacteria root:Host-associated:Mammals:Skin 3.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 phylum Actinobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 phylum Actinobacteria root:Environmental:Terrestrial:Oil reservoir 1.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 phylum Actinobacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +phylum Actinobacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 phylum Actinobacteria root:Environmental:Terrestrial:Soil:Mine drainage 1.0 phylum Actinobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -2195,6 +2238,7 @@ phylum Actinobacteria root:Environmental:Terrestrial:Volcanic 3.0 phylum Actinobacteria root:Environmental:Aquatic:Lentic 2.0 phylum Actinobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 phylum Actinobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Actinobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Actinobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Actinobacteria root:Host-associated:Protozoa 1.0 phylum Actinobacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -2218,41 +2262,40 @@ phylum Actinobacteria root:Host-associated:Mammals:Milk 1.0 phylum Actinobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 phylum Actinobacteria root:Engineered:Solid waste:Solid animal waste 1.0 phylum Actinobacteria root:Host-associated:Annelida 1.0 -phylum Actinobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Actinobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Actinobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lake 36.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Pond 5.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Sediment 16.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Sediment 17.0 phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Fecal 42.0 phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Verrucomicrobia root:Host-associated:Birds:Digestive system:Fecal 4.0 phylum Verrucomicrobia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 176.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Marine 262.0 +phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 184.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Marine 267.0 phylum Verrucomicrobia root:Host-associated:Fish 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic 68.0 -phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system 24.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic 70.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system 25.0 phylum Verrucomicrobia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Geologic 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Forest soil 18.0 phylum Verrucomicrobia root:Environmental:Aquatic:Lentic:Brackish 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 5.0 -phylum Verrucomicrobia root:Host-associated:Human 6.0 +phylum Verrucomicrobia root:Host-associated:Human 7.0 phylum Verrucomicrobia root:Host-associated:Plants 19.0 phylum Verrucomicrobia root:Environmental:Aquatic:Estuary:Sediment 9.0 -phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Large intestine 12.0 +phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Large intestine 13.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Agricultural 37.0 phylum Verrucomicrobia root:Engineered:Bioreactor 32.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 17.0 -phylum Verrucomicrobia root:Engineered:Wastewater:Activated Sludge 47.0 +phylum Verrucomicrobia root:Engineered:Wastewater:Activated Sludge 48.0 phylum Verrucomicrobia root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Verrucomicrobia root:Host-associated:Human:Skin 7.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Permafrost 10.0 -phylum Verrucomicrobia root:Mixed 19.0 +phylum Verrucomicrobia root:Mixed 21.0 phylum Verrucomicrobia root:Host-associated:Mammals 9.0 phylum Verrucomicrobia root:Host-associated:Amphibia 5.0 phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Intestine 3.0 @@ -2260,28 +2303,32 @@ phylum Verrucomicrobia root:Engineered:Food production:Fermented beverages 3.0 phylum Verrucomicrobia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Verrucomicrobia root:Engineered:Wastewater 11.0 phylum Verrucomicrobia root:Host-associated:Human:Reproductive system:Vagina 8.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 58.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 59.0 phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Oral 4.0 phylum Verrucomicrobia root:Engineered:Food production:Dairy products 6.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Contaminated 12.0 phylum Verrucomicrobia root:Host-associated:Plants:Phylloplane 5.0 -phylum Verrucomicrobia root:Host-associated:Plants:Rhizosphere 53.0 +phylum Verrucomicrobia root:Host-associated:Plants:Rhizosphere 54.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Coastal:Sediment 15.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Verrucomicrobia root:Environmental:Terrestrial:Soil 164.0 +phylum Verrucomicrobia root:Environmental:Terrestrial:Soil 166.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Sediment 48.0 -phylum Verrucomicrobia root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +phylum Verrucomicrobia root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lotic 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Sediment 13.0 phylum Verrucomicrobia root:Environmental:Aquatic 13.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Midgut 5.0 phylum Verrucomicrobia root:Engineered:Biogas plant:Wet fermentation 6.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Tropical rainforest 6.0 phylum Verrucomicrobia root:Host-associated:Porifera 4.0 +phylum Verrucomicrobia root:Engineered:Lab enrichment 4.0 phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Wetlands 6.0 phylum Verrucomicrobia root:Engineered:Lab Synthesis 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Grasslands 14.0 phylum Verrucomicrobia root:Host-associated:Birds:Digestive system:Ceca 3.0 +phylum Verrucomicrobia root:Host-associated:Plants:Rhizosphere:Soil 19.0 phylum Verrucomicrobia root:Host-associated:Human:Digestive system 28.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater 13.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 @@ -2292,10 +2339,10 @@ phylum Verrucomicrobia root:Engineered:Solid waste:Composting 16.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Drinking water 4.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Desert 10.0 phylum Verrucomicrobia root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 47.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 48.0 phylum Verrucomicrobia root:Host-associated:Algae:Red algae 4.0 phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -phylum Verrucomicrobia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +phylum Verrucomicrobia root:Host-associated:Arthropoda:Digestive system:Gut 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 phylum Verrucomicrobia root:Engineered:Lab enrichment:Defined media 4.0 phylum Verrucomicrobia root:Host-associated:Plants:Root 11.0 @@ -2305,8 +2352,7 @@ phylum Verrucomicrobia root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Verrucomicrobia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -phylum Verrucomicrobia root:Host-associated:Plants:Rhizosphere:Soil 19.0 -phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Large intestine 9.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Large intestine 10.0 phylum Verrucomicrobia root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lentic 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 @@ -2321,7 +2367,6 @@ phylum Verrucomicrobia root:Host-associated:Insecta:Digestive system 2.0 phylum Verrucomicrobia root:Host-associated 7.0 phylum Verrucomicrobia root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Verrucomicrobia root:Host-associated:Mollusca 3.0 -phylum Verrucomicrobia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Verrucomicrobia root:Host-associated:Fish:Digestive system 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Mine 3.0 phylum Verrucomicrobia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 @@ -2337,16 +2382,17 @@ phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Drinking water:Deli phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 5.0 phylum Verrucomicrobia root:Host-associated:Human:Reproductive system:Female 1.0 phylum Verrucomicrobia root:Engineered:Solid waste 1.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Thermal springs:Sediment 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Photic zone 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Groundwater 13.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Marginal Sea 4.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Marginal Sea 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Pelagic 12.0 -phylum Verrucomicrobia root:Engineered:Wastewater:Water and sludge 8.0 +phylum Verrucomicrobia root:Engineered:Wastewater:Water and sludge 9.0 phylum Verrucomicrobia root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Verrucomicrobia root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone 2.0 phylum Verrucomicrobia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -2357,18 +2403,16 @@ phylum Verrucomicrobia root:Host-associated:Mammals:Gastrointestinal tract 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Benthic 7.0 phylum Verrucomicrobia root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -phylum Verrucomicrobia root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Ice 3.0 phylum Verrucomicrobia root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Crop 2.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 phylum Verrucomicrobia root:Host-associated:Fish:Digestive system:Intestine 3.0 -phylum Verrucomicrobia root:Host-associated:Insecta 4.0 +phylum Verrucomicrobia root:Host-associated:Insecta 5.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Verrucomicrobia root:Host-associated:Plants:Phylloplane:Endophytes 2.0 phylum Verrucomicrobia root:Engineered:Built environment 4.0 phylum Verrucomicrobia root:Host-associated:Birds:Digestive system 2.0 -phylum Verrucomicrobia root:Engineered:Lab enrichment 4.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Verrucomicrobia root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -2393,11 +2437,11 @@ phylum Verrucomicrobia root:Engineered:Industrial production 1.0 phylum Verrucomicrobia root:Host-associated:Fish:Skin 3.0 phylum Verrucomicrobia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Midgut 3.0 +phylum Verrucomicrobia root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Verrucomicrobia root:Host-associated:Arthropoda 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +phylum Verrucomicrobia root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 phylum Verrucomicrobia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 phylum Verrucomicrobia root:Host-associated:Fungi 1.0 phylum Verrucomicrobia root:Engineered:Bioremediation 2.0 @@ -2408,10 +2452,11 @@ phylum Verrucomicrobia root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 phylum Verrucomicrobia root:Engineered:Biotransformation 2.0 phylum Verrucomicrobia root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Verrucomicrobia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Verrucomicrobia root:Host-associated:Mammals:Skin 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 phylum Verrucomicrobia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +phylum Verrucomicrobia root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 phylum Verrucomicrobia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 phylum Verrucomicrobia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 @@ -2428,6 +2473,7 @@ phylum Verrucomicrobia root:Host-associated:Human:Digestive system:Hindgut:Rectu phylum Verrucomicrobia root 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Volcanic 2.0 phylum Verrucomicrobia root:Environmental:Aquatic:Lentic 2.0 +phylum Verrucomicrobia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Verrucomicrobia root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Verrucomicrobia root:Host-associated:Protozoa 1.0 phylum Verrucomicrobia root:Engineered:Solid waste:Composting:Grass 1.0 @@ -2441,76 +2487,80 @@ phylum Verrucomicrobia root:Environmental:Aquatic:Thermal springs:Near-boiling ( phylum Verrucomicrobia root:Host-associated:Invertebrates:Cnidaria 1.0 phylum Verrucomicrobia root:Environmental:Terrestrial:Agricultural field 1.0 phylum Verrucomicrobia root:Host-associated:Mammals:Milk 1.0 -phylum Verrucomicrobia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +phylum Verrucomicrobia root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Verrucomicrobia root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lake 43.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Pond 6.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Sediment 29.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Fecal 71.0 -phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Sediment 30.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Fecal 74.0 +phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 phylum Bacteroidetes root:Host-associated:Birds:Digestive system:Fecal 13.0 phylum Bacteroidetes root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Bacteroidetes root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Bacteroidetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 213.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine 341.0 +phylum Bacteroidetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 224.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine 363.0 phylum Bacteroidetes root:Host-associated:Fish 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 20.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic 80.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system 35.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic 83.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system 37.0 phylum Bacteroidetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 15.0 phylum Bacteroidetes root:Environmental:Terrestrial:Geologic 3.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Forest soil 26.0 phylum Bacteroidetes root:Environmental:Aquatic:Lentic:Brackish 8.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 16.0 -phylum Bacteroidetes root:Host-associated:Human 22.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 17.0 +phylum Bacteroidetes root:Host-associated:Human 23.0 phylum Bacteroidetes root:Host-associated:Plants 38.0 phylum Bacteroidetes root:Environmental:Aquatic:Estuary:Sediment 17.0 phylum Bacteroidetes root:Engineered:Food production:Silage fermentation 1.0 -phylum Bacteroidetes root:Host-associated:Human:Digestive system:Large intestine 16.0 +phylum Bacteroidetes root:Host-associated:Human:Digestive system:Large intestine 17.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Agricultural 47.0 phylum Bacteroidetes root:Engineered:Bioreactor 96.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 9.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 27.0 -phylum Bacteroidetes root:Engineered:Wastewater:Activated Sludge 80.0 +phylum Bacteroidetes root:Engineered:Wastewater:Activated Sludge 81.0 phylum Bacteroidetes root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Bacteroidetes root:Host-associated:Human:Skin 30.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Permafrost 12.0 -phylum Bacteroidetes root:Mixed 33.0 -phylum Bacteroidetes root:Host-associated:Mammals 16.0 +phylum Bacteroidetes root:Mixed 35.0 +phylum Bacteroidetes root:Host-associated:Mammals 17.0 phylum Bacteroidetes root:Host-associated:Amphibia 5.0 -phylum Bacteroidetes root:Host-associated:Human:Digestive system:Intestine 3.0 -phylum Bacteroidetes root:Engineered:Food production:Fermented beverages 11.0 +phylum Bacteroidetes root:Host-associated:Human:Digestive system:Intestine 4.0 +phylum Bacteroidetes root:Engineered:Food production:Fermented beverages 12.0 phylum Bacteroidetes root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Bacteroidetes root:Engineered:Wastewater 29.0 phylum Bacteroidetes root:Host-associated:Human:Reproductive system:Vagina 15.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 60.0 -phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral 64.0 -phylum Bacteroidetes root:Engineered:Food production:Dairy products 23.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 63.0 +phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral 65.0 +phylum Bacteroidetes root:Engineered:Food production:Dairy products 24.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Contaminated 16.0 phylum Bacteroidetes root:Host-associated:Plants:Phylloplane 11.0 -phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere 63.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Coastal:Sediment 31.0 +phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere 65.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Coastal:Sediment 32.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Bacteroidetes root:Environmental:Terrestrial:Soil 227.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Sediment 139.0 -phylum Bacteroidetes root:Engineered:Modeled:Simulated communities (microbial mixture) 11.0 +phylum Bacteroidetes root:Environmental:Terrestrial:Soil 229.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Sediment 140.0 +phylum Bacteroidetes root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 +phylum Bacteroidetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lotic 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Sediment 29.0 phylum Bacteroidetes root:Environmental:Aquatic 13.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Midgut 6.0 phylum Bacteroidetes root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 phylum Bacteroidetes root:Engineered:Biogas plant:Wet fermentation 9.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 phylum Bacteroidetes root:Host-associated:Porifera 17.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +phylum Bacteroidetes root:Engineered:Lab enrichment 11.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Wetlands 10.0 phylum Bacteroidetes root:Engineered:Lab Synthesis 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Grasslands 18.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 phylum Bacteroidetes root:Host-associated:Birds:Digestive system:Ceca 10.0 phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere:Soil 31.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system 39.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater 15.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater 16.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 7.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Thermal springs 3.0 @@ -2522,11 +2572,11 @@ phylum Bacteroidetes root:Host-associated:Human:Respiratory system:Pulmonary sys phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Drinking water 5.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Desert 18.0 phylum Bacteroidetes root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 62.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Bacteroidetes root:Host-associated:Algae:Red algae 9.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 -phylum Bacteroidetes root:Host-associated:Arthropoda:Digestive system:Gut 5.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 +phylum Bacteroidetes root:Host-associated:Arthropoda:Digestive system:Gut 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Hydrothermal vents 13.0 phylum Bacteroidetes root:Engineered:Lab enrichment:Defined media 13.0 phylum Bacteroidetes root:Host-associated:Plants:Root 10.0 @@ -2537,10 +2587,9 @@ phylum Bacteroidetes root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Bacteroidetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 11.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 18.0 -phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere:Soil 30.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Large intestine 15.0 phylum Bacteroidetes root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -phylum Bacteroidetes root:Engineered:Food production:Fermented seafood 2.0 +phylum Bacteroidetes root:Engineered:Food production:Fermented seafood 3.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lentic 5.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Estuary 33.0 @@ -2552,12 +2601,11 @@ phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 phylum Bacteroidetes root:Engineered:Wastewater:Industrial wastewater 17.0 phylum Bacteroidetes root:Engineered:Modeled 5.0 -phylum Bacteroidetes root:Host-associated:Insecta:Digestive system 9.0 +phylum Bacteroidetes root:Host-associated:Insecta:Digestive system 10.0 phylum Bacteroidetes root:Host-associated 11.0 phylum Bacteroidetes root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Bacteroidetes root:Host-associated:Mollusca 4.0 -phylum Bacteroidetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Bacteroidetes root:Host-associated:Fish:Digestive system 2.0 +phylum Bacteroidetes root:Host-associated:Fish:Digestive system 3.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Mine 3.0 phylum Bacteroidetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Sand 6.0 @@ -2574,16 +2622,17 @@ phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated phylum Bacteroidetes root:Host-associated:Human:Reproductive system:Female 2.0 phylum Bacteroidetes root:Engineered:Solid waste 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 phylum Bacteroidetes root:Environmental:Aquatic:Thermal springs:Sediment 7.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 8.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Groundwater 19.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Groundwater 20.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 -phylum Bacteroidetes root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +phylum Bacteroidetes root:Environmental:Aquatic:Marine:Marginal Sea 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Pelagic 14.0 -phylum Bacteroidetes root:Engineered:Wastewater:Water and sludge 22.0 -phylum Bacteroidetes root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Bacteroidetes root:Engineered:Wastewater:Water and sludge 24.0 +phylum Bacteroidetes root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +phylum Bacteroidetes root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone 3.0 phylum Bacteroidetes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -2596,18 +2645,17 @@ phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-conta phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 12.0 phylum Bacteroidetes root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Bacteroidetes root:Host-associated:Reptile:Oral cavity 1.0 -phylum Bacteroidetes root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 +phylum Bacteroidetes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Ice 6.0 phylum Bacteroidetes root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Crop 2.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 phylum Bacteroidetes root:Host-associated:Fish:Digestive system:Intestine 4.0 -phylum Bacteroidetes root:Host-associated:Insecta 12.0 +phylum Bacteroidetes root:Host-associated:Insecta 13.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Bacteroidetes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Bacteroidetes root:Engineered:Built environment 12.0 +phylum Bacteroidetes root:Engineered:Built environment 13.0 phylum Bacteroidetes root:Host-associated:Birds:Digestive system 7.0 -phylum Bacteroidetes root:Engineered:Lab enrichment 11.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Bacteroidetes root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 phylum Bacteroidetes root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 @@ -2638,32 +2686,34 @@ phylum Bacteroidetes root:Host-associated:Fish:Skin 3.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Bacteroidetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 7.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Midgut 3.0 +phylum Bacteroidetes root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Bacteroidetes root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Bacteroidetes root:Host-associated:Arthropoda 4.0 phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +phylum Bacteroidetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 phylum Bacteroidetes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 phylum Bacteroidetes root:Host-associated:Fungi 1.0 phylum Bacteroidetes root:Engineered:Bioremediation 3.0 phylum Bacteroidetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 phylum Bacteroidetes root:Host-associated:Human:Respiratory system 4.0 phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Bacteroidetes root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Uranium contaminated 2.0 phylum Bacteroidetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 phylum Bacteroidetes root:Engineered:Bioremediation:Hydrocarbon 2.0 phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 phylum Bacteroidetes root:Engineered:Biotransformation 4.0 phylum Bacteroidetes root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 -phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Bacteroidetes root:Host-associated:Mammals:Skin 3.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 -phylum Bacteroidetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +phylum Bacteroidetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 phylum Bacteroidetes root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Oil reservoir 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 phylum Bacteroidetes root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +phylum Bacteroidetes root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Mine drainage 1.0 phylum Bacteroidetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 @@ -2692,6 +2742,7 @@ phylum Bacteroidetes root:Environmental:Terrestrial:Volcanic 2.0 phylum Bacteroidetes root:Environmental:Aquatic:Lentic 2.0 phylum Bacteroidetes root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 phylum Bacteroidetes root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Bacteroidetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Bacteroidetes root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Bacteroidetes root:Engineered:Solid waste:Composting:Grass 1.0 phylum Bacteroidetes root:Host-associated:Invertebrates 1.0 @@ -2712,24 +2763,24 @@ phylum Bacteroidetes root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1 phylum Bacteroidetes root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 phylum Bacteroidetes root:Environmental:Terrestrial:Agricultural field 1.0 phylum Bacteroidetes root:Host-associated:Mammals:Milk 1.0 +phylum Bacteroidetes root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Bacteroidetes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 phylum Bacteroidetes root:Engineered:Solid waste:Solid animal waste 1.0 -phylum Bacteroidetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Bacteroidetes root:Host-associated:Spiralia 1.0 phylum Bacteroidetes root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Bacteroidetes root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lake 31.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Pond 1.0 -phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Sediment 26.0 +phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Sediment 27.0 phylum Acidobacteria root:Host-associated:Mammals:Digestive system:Fecal 8.0 phylum Acidobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 phylum Acidobacteria root:Host-associated:Birds:Digestive system:Fecal 2.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -phylum Acidobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 26.0 -phylum Acidobacteria root:Environmental:Aquatic:Marine 122.0 +phylum Acidobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 27.0 +phylum Acidobacteria root:Environmental:Aquatic:Marine 124.0 phylum Acidobacteria root:Host-associated:Fish 3.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 17.0 -phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic 20.0 +phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic 21.0 phylum Acidobacteria root:Host-associated:Mammals:Digestive system 8.0 phylum Acidobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 9.0 phylum Acidobacteria root:Environmental:Terrestrial:Geologic 2.0 @@ -2745,10 +2796,10 @@ phylum Acidobacteria root:Environmental:Terrestrial:Soil:Agricultural 50.0 phylum Acidobacteria root:Engineered:Bioreactor 37.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 28.0 -phylum Acidobacteria root:Engineered:Wastewater:Activated Sludge 42.0 +phylum Acidobacteria root:Engineered:Wastewater:Activated Sludge 43.0 phylum Acidobacteria root:Host-associated:Human:Skin 15.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Permafrost 14.0 -phylum Acidobacteria root:Mixed 28.0 +phylum Acidobacteria root:Mixed 29.0 phylum Acidobacteria root:Host-associated:Mammals 11.0 phylum Acidobacteria root:Host-associated:Amphibia 4.0 phylum Acidobacteria root:Engineered:Food production:Fermented beverages 5.0 @@ -2760,23 +2811,26 @@ phylum Acidobacteria root:Host-associated:Human:Digestive system:Oral 14.0 phylum Acidobacteria root:Engineered:Food production:Dairy products 14.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Contaminated 14.0 phylum Acidobacteria root:Host-associated:Plants:Phylloplane 7.0 -phylum Acidobacteria root:Host-associated:Plants:Rhizosphere 64.0 -phylum Acidobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 26.0 +phylum Acidobacteria root:Host-associated:Plants:Rhizosphere 66.0 +phylum Acidobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 27.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Acidobacteria root:Environmental:Terrestrial:Soil 228.0 -phylum Acidobacteria root:Environmental:Aquatic:Marine:Sediment 127.0 +phylum Acidobacteria root:Environmental:Terrestrial:Soil 231.0 +phylum Acidobacteria root:Environmental:Aquatic:Marine:Sediment 129.0 phylum Acidobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +phylum Acidobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lotic 3.0 phylum Acidobacteria root:Environmental:Aquatic:Sediment 22.0 phylum Acidobacteria root:Environmental:Aquatic 9.0 phylum Acidobacteria root:Engineered:Biogas plant:Wet fermentation 1.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 phylum Acidobacteria root:Host-associated:Porifera 17.0 +phylum Acidobacteria root:Engineered:Lab enrichment 7.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Wetlands 10.0 phylum Acidobacteria root:Engineered:Lab Synthesis 1.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Grasslands 17.0 phylum Acidobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 phylum Acidobacteria root:Host-associated:Birds:Digestive system:Ceca 2.0 +phylum Acidobacteria root:Host-associated:Plants:Rhizosphere:Soil 31.0 phylum Acidobacteria root:Host-associated:Human:Digestive system 8.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater 11.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -2788,7 +2842,7 @@ phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Desert 17.0 phylum Acidobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 phylum Acidobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -phylum Acidobacteria root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +phylum Acidobacteria root:Host-associated:Arthropoda:Digestive system:Gut 2.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 phylum Acidobacteria root:Engineered:Lab enrichment:Defined media 11.0 phylum Acidobacteria root:Host-associated:Plants:Root 11.0 @@ -2797,7 +2851,6 @@ phylum Acidobacteria root:Engineered:Food production 3.0 phylum Acidobacteria root:Environmental:Terrestrial:Deep subsurface 3.0 phylum Acidobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 21.0 -phylum Acidobacteria root:Host-associated:Plants:Rhizosphere:Soil 29.0 phylum Acidobacteria root:Host-associated:Mammals:Digestive system:Large intestine 2.0 phylum Acidobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 3.0 phylum Acidobacteria root:Engineered:Food production:Fermented seafood 1.0 @@ -2810,10 +2863,9 @@ phylum Acidobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 6.0 phylum Acidobacteria root:Engineered:Wastewater:Industrial wastewater 11.0 phylum Acidobacteria root:Engineered:Modeled 1.0 -phylum Acidobacteria root:Host-associated:Insecta:Digestive system 6.0 +phylum Acidobacteria root:Host-associated:Insecta:Digestive system 7.0 phylum Acidobacteria root:Host-associated 3.0 phylum Acidobacteria root:Host-associated:Mollusca 2.0 -phylum Acidobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Acidobacteria root:Host-associated:Fish:Digestive system 1.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Mine 3.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Sand 5.0 @@ -2828,7 +2880,7 @@ phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated phylum Acidobacteria root:Host-associated:Human:Reproductive system:Female 1.0 phylum Acidobacteria root:Engineered:Solid waste 1.0 phylum Acidobacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 phylum Acidobacteria root:Environmental:Aquatic:Thermal springs:Sediment 7.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 5.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Groundwater 12.0 @@ -2837,6 +2889,7 @@ phylum Acidobacteria root:Environmental:Aquatic:Marine:Marginal Sea 5.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Pelagic 4.0 phylum Acidobacteria root:Engineered:Wastewater:Water and sludge 5.0 phylum Acidobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Acidobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 phylum Acidobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Intertidal zone 2.0 phylum Acidobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -2846,17 +2899,15 @@ phylum Acidobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-conta phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 10.0 phylum Acidobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Acidobacteria root:Host-associated:Reptile:Oral cavity 1.0 -phylum Acidobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Ice 5.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 phylum Acidobacteria root:Host-associated:Fish:Digestive system:Intestine 2.0 -phylum Acidobacteria root:Host-associated:Insecta 9.0 -phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 +phylum Acidobacteria root:Host-associated:Insecta 10.0 +phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 3.0 phylum Acidobacteria root:Host-associated:Plants:Phylloplane:Endophytes 2.0 -phylum Acidobacteria root:Engineered:Built environment 7.0 +phylum Acidobacteria root:Engineered:Built environment 8.0 phylum Acidobacteria root:Host-associated:Birds:Digestive system 1.0 -phylum Acidobacteria root:Engineered:Lab enrichment 7.0 phylum Acidobacteria root:Environmental:Terrestrial:Soil:Boreal forest 2.0 phylum Acidobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Acidobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 @@ -2880,10 +2931,11 @@ phylum Acidobacteria root:Environmental:Aquatic:Aquaculture 2.0 phylum Acidobacteria root:Host-associated:Fish:Skin 1.0 phylum Acidobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 +phylum Acidobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Acidobacteria root:Host-associated:Arthropoda 1.0 phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +phylum Acidobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 phylum Acidobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 phylum Acidobacteria root:Host-associated:Fungi 1.0 phylum Acidobacteria root:Engineered:Bioremediation 3.0 @@ -2893,7 +2945,7 @@ phylum Acidobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 2. phylum Acidobacteria root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Acidobacteria root:Engineered:Biotransformation 2.0 phylum Acidobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -phylum Acidobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Acidobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Acidobacteria root:Host-associated:Mammals:Skin 3.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 phylum Acidobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -2915,6 +2967,7 @@ phylum Acidobacteria root:Host-associated:Mammals:Nervous system:Brain 1.0 phylum Acidobacteria root:Environmental:Terrestrial:Volcanic 3.0 phylum Acidobacteria root:Environmental:Aquatic:Lentic 2.0 phylum Acidobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Acidobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Acidobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Acidobacteria root:Host-associated:Protozoa 1.0 phylum Acidobacteria root:Host-associated:Invertebrates 1.0 @@ -2933,12 +2986,11 @@ phylum Acidobacteria root:Environmental:Terrestrial:Agricultural field 1.0 phylum Acidobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 phylum Acidobacteria root:Engineered:Solid waste:Solid animal waste 1.0 phylum Acidobacteria root:Host-associated:Annelida 1.0 -phylum Acidobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Acidobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Acidobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lake 34.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Pond 3.0 -phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Sediment 28.0 +phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Sediment 29.0 phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Fecal 4.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 phylum Chloroflexi root:Host-associated:Birds:Digestive system:Fecal 2.0 @@ -2946,10 +2998,10 @@ phylum Chloroflexi root:Engineered:Wastewater:Nutrient removal:Dissolved organic phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Chloroflexi root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 -phylum Chloroflexi root:Environmental:Aquatic:Marine 201.0 +phylum Chloroflexi root:Environmental:Aquatic:Marine 205.0 phylum Chloroflexi root:Host-associated:Fish 2.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Sediment 20.0 -phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic 47.0 +phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic 49.0 phylum Chloroflexi root:Host-associated:Mammals:Digestive system 3.0 phylum Chloroflexi root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 21.0 phylum Chloroflexi root:Environmental:Terrestrial:Geologic 3.0 @@ -2963,42 +3015,45 @@ phylum Chloroflexi root:Engineered:Food production:Silage fermentation 1.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Large intestine 2.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Agricultural 49.0 phylum Chloroflexi root:Engineered:Bioreactor 89.0 -phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lotic:Sediment 29.0 -phylum Chloroflexi root:Engineered:Wastewater:Activated Sludge 73.0 +phylum Chloroflexi root:Engineered:Wastewater:Activated Sludge 74.0 phylum Chloroflexi root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Chloroflexi root:Host-associated:Human:Skin 11.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Permafrost 13.0 -phylum Chloroflexi root:Mixed 25.0 -phylum Chloroflexi root:Host-associated:Mammals 8.0 +phylum Chloroflexi root:Mixed 26.0 +phylum Chloroflexi root:Host-associated:Mammals 9.0 phylum Chloroflexi root:Host-associated:Amphibia 3.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Intestine 1.0 phylum Chloroflexi root:Engineered:Food production:Fermented beverages 4.0 phylum Chloroflexi root:Engineered:Wastewater 16.0 phylum Chloroflexi root:Host-associated:Human:Reproductive system:Vagina 4.0 -phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 44.0 -phylum Chloroflexi root:Host-associated:Human:Digestive system:Oral 15.0 +phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 45.0 +phylum Chloroflexi root:Host-associated:Human:Digestive system:Oral 16.0 phylum Chloroflexi root:Engineered:Food production:Dairy products 8.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Contaminated 15.0 phylum Chloroflexi root:Host-associated:Plants:Phylloplane 7.0 -phylum Chloroflexi root:Host-associated:Plants:Rhizosphere 55.0 -phylum Chloroflexi root:Environmental:Aquatic:Marine:Coastal:Sediment 27.0 +phylum Chloroflexi root:Host-associated:Plants:Rhizosphere 57.0 +phylum Chloroflexi root:Environmental:Aquatic:Marine:Coastal:Sediment 28.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Chloroflexi root:Environmental:Terrestrial:Soil 217.0 -phylum Chloroflexi root:Environmental:Aquatic:Marine:Sediment 136.0 +phylum Chloroflexi root:Environmental:Terrestrial:Soil 219.0 +phylum Chloroflexi root:Environmental:Aquatic:Marine:Sediment 139.0 phylum Chloroflexi root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lotic 3.0 phylum Chloroflexi root:Environmental:Aquatic:Sediment 25.0 phylum Chloroflexi root:Environmental:Aquatic 7.0 +phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Chloroflexi root:Engineered:Biogas plant:Wet fermentation 7.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 phylum Chloroflexi root:Host-associated:Porifera 19.0 +phylum Chloroflexi root:Engineered:Lab enrichment 9.0 phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Wetlands 9.0 phylum Chloroflexi root:Engineered:Lab Synthesis 1.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Grasslands 18.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 phylum Chloroflexi root:Host-associated:Birds:Digestive system:Ceca 2.0 +phylum Chloroflexi root:Host-associated:Plants:Rhizosphere:Soil 29.0 phylum Chloroflexi root:Host-associated:Human:Digestive system 5.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater 9.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -3015,8 +3070,8 @@ phylum Chloroflexi root:Engineered:Bioremediation:Persistent organic pollutants phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 phylum Chloroflexi root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 5.0 phylum Chloroflexi root:Host-associated:Algae:Red algae 4.0 -phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -phylum Chloroflexi root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +phylum Chloroflexi root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +phylum Chloroflexi root:Host-associated:Arthropoda:Digestive system:Gut 3.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Hydrothermal vents 11.0 phylum Chloroflexi root:Engineered:Lab enrichment:Defined media 11.0 phylum Chloroflexi root:Host-associated:Plants:Root 6.0 @@ -3026,7 +3081,6 @@ phylum Chloroflexi root:Environmental:Terrestrial:Deep subsurface 4.0 phylum Chloroflexi root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Chloroflexi root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lentic:Sediment 20.0 -phylum Chloroflexi root:Host-associated:Plants:Rhizosphere:Soil 28.0 phylum Chloroflexi root:Host-associated:Human:Respiratory system:Nasopharyngeal 3.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lentic 4.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 @@ -3037,7 +3091,7 @@ phylum Chloroflexi root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Oil-contaminated 7.0 phylum Chloroflexi root:Engineered:Wastewater:Industrial wastewater 15.0 phylum Chloroflexi root:Engineered:Modeled 1.0 -phylum Chloroflexi root:Host-associated:Insecta:Digestive system 3.0 +phylum Chloroflexi root:Host-associated:Insecta:Digestive system 4.0 phylum Chloroflexi root:Host-associated 4.0 phylum Chloroflexi root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Chloroflexi root:Host-associated:Mollusca 2.0 @@ -3056,23 +3110,24 @@ phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Drinking water:Delivery phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 phylum Chloroflexi root:Engineered:Solid waste 1.0 phylum Chloroflexi root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 -phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 +phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 phylum Chloroflexi root:Environmental:Aquatic:Thermal springs:Sediment 6.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater 14.0 +phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater 15.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Marginal Sea 6.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Pelagic 5.0 phylum Chloroflexi root:Engineered:Wastewater:Water and sludge 16.0 -phylum Chloroflexi root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +phylum Chloroflexi root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Chloroflexi root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone 2.0 phylum Chloroflexi root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 phylum Chloroflexi root:Host-associated:Invertebrates:Echinodermata 1.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 4.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Benthic 9.0 -phylum Chloroflexi root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 +phylum Chloroflexi root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Ice 2.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Crop 3.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 @@ -3080,9 +3135,8 @@ phylum Chloroflexi root:Host-associated:Fish:Digestive system:Intestine 3.0 phylum Chloroflexi root:Host-associated:Insecta 6.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Chloroflexi root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Chloroflexi root:Engineered:Built environment 6.0 +phylum Chloroflexi root:Engineered:Built environment 7.0 phylum Chloroflexi root:Host-associated:Birds:Digestive system 2.0 -phylum Chloroflexi root:Engineered:Lab enrichment 9.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Chloroflexi root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 6.0 @@ -3107,10 +3161,11 @@ phylum Chloroflexi root:Environmental:Aquatic:Aquaculture 2.0 phylum Chloroflexi root:Host-associated:Fish:Skin 1.0 phylum Chloroflexi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +phylum Chloroflexi root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Chloroflexi root:Host-associated:Arthropoda 2.0 phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +phylum Chloroflexi root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 phylum Chloroflexi root:Engineered:Bioremediation 3.0 phylum Chloroflexi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 phylum Chloroflexi root:Host-associated:Human:Respiratory system 1.0 @@ -3118,7 +3173,7 @@ phylum Chloroflexi root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 phylum Chloroflexi root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Chloroflexi root:Engineered:Biotransformation 3.0 phylum Chloroflexi root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 -phylum Chloroflexi root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Chloroflexi root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Chloroflexi root:Host-associated:Mammals:Skin 2.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 phylum Chloroflexi root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -3150,6 +3205,7 @@ phylum Chloroflexi root:Host-associated:Mammals:Nervous system:Brain 1.0 phylum Chloroflexi root:Environmental:Terrestrial:Volcanic 2.0 phylum Chloroflexi root:Environmental:Aquatic:Lentic 2.0 phylum Chloroflexi root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Chloroflexi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Chloroflexi root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Chloroflexi root:Engineered:Solid waste:Composting:Grass 1.0 phylum Chloroflexi root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 @@ -3167,34 +3223,33 @@ phylum Chloroflexi root:Host-associated:Mammals:Milk 1.0 phylum Chloroflexi root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 phylum Chloroflexi root:Engineered:Solid waste:Solid animal waste 1.0 phylum Chloroflexi root:Host-associated:Annelida 1.0 -phylum Chloroflexi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Chloroflexi root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Chloroflexi root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lake 36.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Pond 2.0 -phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Sediment 14.0 +phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Sediment 15.0 phylum Planctomycetes root:Host-associated:Mammals:Digestive system:Fecal 6.0 phylum Planctomycetes root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Planctomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine 232.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine 238.0 phylum Planctomycetes root:Host-associated:Fish 4.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 19.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic 56.0 -phylum Planctomycetes root:Host-associated:Mammals:Digestive system 1.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic 58.0 +phylum Planctomycetes root:Host-associated:Mammals:Digestive system 2.0 phylum Planctomycetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 10.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Forest soil 26.0 phylum Planctomycetes root:Environmental:Aquatic:Lentic:Brackish 1.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 12.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 13.0 phylum Planctomycetes root:Host-associated:Human 3.0 phylum Planctomycetes root:Host-associated:Plants 25.0 phylum Planctomycetes root:Environmental:Aquatic:Estuary:Sediment 14.0 phylum Planctomycetes root:Engineered:Food production:Silage fermentation 1.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Agricultural 45.0 phylum Planctomycetes root:Engineered:Bioreactor 33.0 -phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 24.0 -phylum Planctomycetes root:Engineered:Wastewater:Activated Sludge 48.0 +phylum Planctomycetes root:Engineered:Wastewater:Activated Sludge 49.0 phylum Planctomycetes root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Planctomycetes root:Host-associated:Human:Skin 6.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Permafrost 8.0 @@ -3204,27 +3259,30 @@ phylum Planctomycetes root:Host-associated:Amphibia 3.0 phylum Planctomycetes root:Engineered:Food production:Fermented beverages 2.0 phylum Planctomycetes root:Engineered:Wastewater 12.0 phylum Planctomycetes root:Host-associated:Human:Reproductive system:Vagina 1.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 17.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 19.0 phylum Planctomycetes root:Host-associated:Human:Digestive system:Oral 3.0 phylum Planctomycetes root:Engineered:Food production:Dairy products 4.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Contaminated 10.0 phylum Planctomycetes root:Host-associated:Plants:Phylloplane 4.0 -phylum Planctomycetes root:Host-associated:Plants:Rhizosphere 36.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine:Coastal:Sediment 27.0 +phylum Planctomycetes root:Host-associated:Plants:Rhizosphere 38.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine:Coastal:Sediment 28.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -phylum Planctomycetes root:Environmental:Terrestrial:Soil 172.0 -phylum Planctomycetes root:Environmental:Aquatic:Marine:Sediment 125.0 +phylum Planctomycetes root:Environmental:Terrestrial:Soil 175.0 +phylum Planctomycetes root:Environmental:Aquatic:Marine:Sediment 128.0 phylum Planctomycetes root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +phylum Planctomycetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lotic 5.0 phylum Planctomycetes root:Environmental:Aquatic:Sediment 15.0 phylum Planctomycetes root:Environmental:Aquatic 11.0 phylum Planctomycetes root:Engineered:Biogas plant:Wet fermentation 2.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Tropical rainforest 8.0 phylum Planctomycetes root:Host-associated:Porifera 10.0 +phylum Planctomycetes root:Engineered:Lab enrichment 5.0 phylum Planctomycetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Wetlands 6.0 phylum Planctomycetes root:Engineered:Lab Synthesis 1.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Grasslands 15.0 +phylum Planctomycetes root:Host-associated:Plants:Rhizosphere:Soil 27.0 phylum Planctomycetes root:Host-associated:Human:Digestive system 2.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater 11.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 5.0 @@ -3236,7 +3294,7 @@ phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Drinking water 5.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Desert 12.0 phylum Planctomycetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 phylum Planctomycetes root:Host-associated:Algae:Red algae 5.0 -phylum Planctomycetes root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +phylum Planctomycetes root:Host-associated:Arthropoda:Digestive system:Gut 2.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Hydrothermal vents 8.0 phylum Planctomycetes root:Engineered:Lab enrichment:Defined media 9.0 phylum Planctomycetes root:Host-associated:Plants:Root 9.0 @@ -3247,7 +3305,6 @@ phylum Planctomycetes root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Planctomycetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 phylum Planctomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 15.0 -phylum Planctomycetes root:Host-associated:Plants:Rhizosphere:Soil 26.0 phylum Planctomycetes root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lentic 3.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 5.0 @@ -3263,6 +3320,7 @@ phylum Planctomycetes root:Host-associated:Insecta:Digestive system 5.0 phylum Planctomycetes root:Host-associated 5.0 phylum Planctomycetes root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Planctomycetes root:Host-associated:Mollusca 3.0 +phylum Planctomycetes root:Host-associated:Fish:Digestive system 1.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Mine 3.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Sand 4.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Ice:Glacier 5.0 @@ -3275,7 +3333,7 @@ phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Drinking water:Deliv phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 phylum Planctomycetes root:Engineered:Solid waste 1.0 phylum Planctomycetes root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 phylum Planctomycetes root:Environmental:Aquatic:Thermal springs:Sediment 5.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic:Photic zone 4.0 @@ -3284,7 +3342,8 @@ phylum Planctomycetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Marginal Sea 6.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Pelagic 7.0 phylum Planctomycetes root:Engineered:Wastewater:Water and sludge 8.0 -phylum Planctomycetes root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +phylum Planctomycetes root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Planctomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone 2.0 phylum Planctomycetes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 phylum Planctomycetes root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -3292,17 +3351,15 @@ phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Mine dra phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 9.0 phylum Planctomycetes root:Host-associated:Reptile:Oral cavity 1.0 -phylum Planctomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Ice 3.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Crop 2.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 phylum Planctomycetes root:Host-associated:Fish:Digestive system:Intestine 4.0 -phylum Planctomycetes root:Host-associated:Insecta 6.0 -phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +phylum Planctomycetes root:Host-associated:Insecta 7.0 +phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Planctomycetes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Planctomycetes root:Engineered:Built environment 6.0 +phylum Planctomycetes root:Engineered:Built environment 7.0 phylum Planctomycetes root:Host-associated:Birds:Digestive system 1.0 -phylum Planctomycetes root:Engineered:Lab enrichment 5.0 phylum Planctomycetes root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Planctomycetes root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 @@ -3325,11 +3382,12 @@ phylum Planctomycetes root:Environmental:Aquatic:Aquaculture 3.0 phylum Planctomycetes root:Host-associated:Fish:Skin 2.0 phylum Planctomycetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +phylum Planctomycetes root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Planctomycetes root:Host-associated:Arthropoda 3.0 phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 -phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +phylum Planctomycetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 phylum Planctomycetes root:Host-associated:Fungi 1.0 phylum Planctomycetes root:Engineered:Bioremediation 3.0 phylum Planctomycetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 @@ -3362,6 +3420,7 @@ phylum Planctomycetes root:Host-associated:Mammals:Nervous system:Brain 1.0 phylum Planctomycetes root:Environmental:Terrestrial:Volcanic 2.0 phylum Planctomycetes root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 phylum Planctomycetes root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Planctomycetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Planctomycetes root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Planctomycetes root:Host-associated:Protozoa 1.0 phylum Planctomycetes root:Engineered:Solid waste:Composting:Grass 1.0 @@ -3376,12 +3435,11 @@ phylum Planctomycetes root:Environmental:Aquatic:Thermal springs:Near-boiling (> phylum Planctomycetes root:Environmental:Aquatic:Marine:Oil seeps 1.0 phylum Planctomycetes root:Host-associated:Invertebrates:Cnidaria 1.0 phylum Planctomycetes root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 -phylum Planctomycetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Lake 5.0 phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Chlamydiae root:Host-associated:Mammals:Digestive system:Fecal 6.0 phylum Chlamydiae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 -phylum Chlamydiae root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 +phylum Chlamydiae root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 phylum Chlamydiae root:Environmental:Aquatic:Marine 21.0 phylum Chlamydiae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 phylum Chlamydiae root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -3399,7 +3457,7 @@ phylum Chlamydiae root:Host-associated:Mammals 1.0 phylum Chlamydiae root:Host-associated:Human:Digestive system:Intestine 1.0 phylum Chlamydiae root:Engineered:Wastewater 2.0 phylum Chlamydiae root:Host-associated:Human:Reproductive system:Vagina 5.0 -phylum Chlamydiae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +phylum Chlamydiae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 phylum Chlamydiae root:Host-associated:Human:Digestive system:Oral 1.0 phylum Chlamydiae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 phylum Chlamydiae root:Environmental:Terrestrial:Soil 13.0 @@ -3408,6 +3466,7 @@ phylum Chlamydiae root:Engineered:Modeled:Simulated communities (microbial mixtu phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Chlamydiae root:Environmental:Aquatic 1.0 phylum Chlamydiae root:Host-associated:Porifera 1.0 +phylum Chlamydiae root:Engineered:Lab enrichment 1.0 phylum Chlamydiae root:Environmental:Terrestrial:Soil:Wetlands 1.0 phylum Chlamydiae root:Environmental:Terrestrial:Soil:Grasslands 1.0 phylum Chlamydiae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -3439,15 +3498,14 @@ phylum Chlamydiae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Chlamydiae root:Environmental:Aquatic:Marine:Pelagic 1.0 phylum Chlamydiae root:Engineered:Wastewater:Water and sludge 1.0 phylum Chlamydiae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +phylum Chlamydiae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Chlamydiae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 phylum Chlamydiae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -phylum Chlamydiae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Chlamydiae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Chlamydiae root:Engineered:Built environment 1.0 phylum Chlamydiae root:Host-associated:Birds:Digestive system 2.0 -phylum Chlamydiae root:Engineered:Lab enrichment 1.0 phylum Chlamydiae root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Chlamydiae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 phylum Chlamydiae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -3495,7 +3553,7 @@ phylum Nitrospirae root:Host-associated:Human:Digestive system:Oral 2.0 phylum Nitrospirae root:Engineered:Food production:Dairy products 2.0 phylum Nitrospirae root:Environmental:Terrestrial:Soil:Contaminated 7.0 phylum Nitrospirae root:Host-associated:Plants:Phylloplane 1.0 -phylum Nitrospirae root:Host-associated:Plants:Rhizosphere 12.0 +phylum Nitrospirae root:Host-associated:Plants:Rhizosphere 13.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 phylum Nitrospirae root:Environmental:Terrestrial:Soil 101.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Sediment 33.0 @@ -3506,6 +3564,7 @@ phylum Nitrospirae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 phylum Nitrospirae root:Host-associated:Porifera 11.0 phylum Nitrospirae root:Environmental:Terrestrial:Soil:Wetlands 4.0 phylum Nitrospirae root:Environmental:Terrestrial:Soil:Grasslands 8.0 +phylum Nitrospirae root:Host-associated:Plants:Rhizosphere:Soil 18.0 phylum Nitrospirae root:Host-associated:Human:Digestive system 2.0 phylum Nitrospirae root:Environmental:Aquatic:Freshwater 2.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -3518,6 +3577,7 @@ phylum Nitrospirae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 phylum Nitrospirae root:Environmental:Terrestrial:Soil:Desert 4.0 phylum Nitrospirae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 phylum Nitrospirae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 +phylum Nitrospirae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Nitrospirae root:Engineered:Lab enrichment:Defined media 2.0 phylum Nitrospirae root:Host-associated:Plants:Root 3.0 @@ -3527,7 +3587,6 @@ phylum Nitrospirae root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Nitrospirae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Nitrospirae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 10.0 -phylum Nitrospirae root:Host-associated:Plants:Rhizosphere:Soil 17.0 phylum Nitrospirae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 phylum Nitrospirae root:Environmental:Aquatic:Estuary 1.0 @@ -3544,6 +3603,7 @@ phylum Nitrospirae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 3. phylum Nitrospirae root:Engineered:Bioreactor:Continuous culture 4.0 phylum Nitrospirae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 phylum Nitrospirae root:Engineered:Solid waste 1.0 +phylum Nitrospirae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 phylum Nitrospirae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 phylum Nitrospirae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 phylum Nitrospirae root:Environmental:Aquatic:Freshwater:Groundwater 4.0 @@ -3599,7 +3659,7 @@ phylum Gemmatimonadetes root:Host-associated:Mammals:Digestive system:Fecal 2.0 phylum Gemmatimonadetes root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Gemmatimonadetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 -phylum Gemmatimonadetes root:Environmental:Aquatic:Marine 66.0 +phylum Gemmatimonadetes root:Environmental:Aquatic:Marine 67.0 phylum Gemmatimonadetes root:Host-associated:Fish 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic 12.0 @@ -3628,20 +3688,23 @@ phylum Gemmatimonadetes root:Host-associated:Human:Digestive system:Oral 2.0 phylum Gemmatimonadetes root:Engineered:Food production:Dairy products 7.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Contaminated 12.0 phylum Gemmatimonadetes root:Host-associated:Plants:Phylloplane 4.0 -phylum Gemmatimonadetes root:Host-associated:Plants:Rhizosphere 48.0 +phylum Gemmatimonadetes root:Host-associated:Plants:Rhizosphere 50.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Coastal:Sediment 16.0 -phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil 168.0 -phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Sediment 63.0 +phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil 169.0 +phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Sediment 64.0 phylum Gemmatimonadetes root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Sediment 10.0 phylum Gemmatimonadetes root:Environmental:Aquatic 3.0 +phylum Gemmatimonadetes root:Host-associated:Mammals:Digestive system:Midgut 2.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Tropical rainforest 6.0 phylum Gemmatimonadetes root:Host-associated:Porifera 13.0 +phylum Gemmatimonadetes root:Engineered:Lab enrichment 5.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Wetlands 4.0 phylum Gemmatimonadetes root:Engineered:Lab Synthesis 1.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Grasslands 15.0 phylum Gemmatimonadetes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 phylum Gemmatimonadetes root:Host-associated:Birds:Digestive system:Ceca 1.0 +phylum Gemmatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 26.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater 5.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 @@ -3660,7 +3723,6 @@ phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oil-contaminated sedim phylum Gemmatimonadetes root:Engineered:Food production 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -phylum Gemmatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 24.0 phylum Gemmatimonadetes root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lentic 4.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 @@ -3682,6 +3744,7 @@ phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Crop:Agricultural la phylum Gemmatimonadetes root:Engineered:Bioreactor:Continuous culture 2.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 phylum Gemmatimonadetes root:Engineered:Solid waste 1.0 +phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Thermal springs:Sediment 2.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Groundwater 3.0 @@ -3689,12 +3752,12 @@ phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Marginal Sea 4.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Pelagic 2.0 phylum Gemmatimonadetes root:Engineered:Wastewater:Water and sludge 2.0 +phylum Gemmatimonadetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Gemmatimonadetes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Gemmatimonadetes root:Host-associated:Invertebrates:Echinodermata 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 phylum Gemmatimonadetes root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -phylum Gemmatimonadetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Ice 3.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Crop 2.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 @@ -3702,7 +3765,6 @@ phylum Gemmatimonadetes root:Host-associated:Insecta 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Gemmatimonadetes root:Engineered:Built environment 3.0 phylum Gemmatimonadetes root:Host-associated:Birds:Digestive system 1.0 -phylum Gemmatimonadetes root:Engineered:Lab enrichment 5.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Boreal forest 1.0 phylum Gemmatimonadetes root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Gemmatimonadetes root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -3720,7 +3782,7 @@ phylum Gemmatimonadetes root:Engineered 2.0 phylum Gemmatimonadetes root:Host-associated:Plants:Rhizome 1.0 phylum Gemmatimonadetes root:Engineered:Industrial production 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -phylum Gemmatimonadetes root:Host-associated:Mammals:Digestive system:Midgut 2.0 +phylum Gemmatimonadetes root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Gemmatimonadetes root:Host-associated:Arthropoda 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 @@ -3741,77 +3803,81 @@ phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Loam:Agricultural 2. phylum Gemmatimonadetes root 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Lentic 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Gemmatimonadetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Gemmatimonadetes root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Gemmatimonadetes root:Engineered:Solid waste:Composting:Grass 1.0 phylum Gemmatimonadetes root:Environmental:Aquatic:Marine:Volcanic 1.0 phylum Gemmatimonadetes root:Host-associated:Annelida:Digestive system 1.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 phylum Gemmatimonadetes root:Environmental:Terrestrial:Agricultural field 1.0 -phylum Gemmatimonadetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lake 40.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Pond 5.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 28.0 -class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 29.0 -class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 30.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 30.0 +class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 class Betaproteobacteria root:Host-associated:Birds:Digestive system:Fecal 9.0 class Betaproteobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -class Betaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 182.0 -class Betaproteobacteria root:Environmental:Aquatic:Marine 183.0 +class Betaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 189.0 +class Betaproteobacteria root:Environmental:Aquatic:Marine 195.0 class Betaproteobacteria root:Host-associated:Fish 5.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 -class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 46.0 +class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 48.0 class Betaproteobacteria root:Host-associated:Mammals:Digestive system 20.0 class Betaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 17.0 class Betaproteobacteria root:Environmental:Terrestrial:Geologic 3.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Forest soil 26.0 class Betaproteobacteria root:Environmental:Aquatic:Lentic:Brackish 7.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 -class Betaproteobacteria root:Host-associated:Human 21.0 +class Betaproteobacteria root:Host-associated:Human 22.0 class Betaproteobacteria root:Host-associated:Plants 32.0 class Betaproteobacteria root:Environmental:Aquatic:Estuary:Sediment 10.0 class Betaproteobacteria root:Engineered:Food production:Silage fermentation 1.0 -class Betaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 13.0 +class Betaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 14.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Agricultural 50.0 class Betaproteobacteria root:Engineered:Bioreactor 68.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 9.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 27.0 -class Betaproteobacteria root:Engineered:Wastewater:Activated Sludge 81.0 +class Betaproteobacteria root:Engineered:Wastewater:Activated Sludge 82.0 class Betaproteobacteria root:Host-associated:Human:Skin 29.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Permafrost 13.0 -class Betaproteobacteria root:Mixed 24.0 -class Betaproteobacteria root:Host-associated:Mammals 15.0 +class Betaproteobacteria root:Mixed 25.0 +class Betaproteobacteria root:Host-associated:Mammals 16.0 class Betaproteobacteria root:Host-associated:Amphibia 5.0 -class Betaproteobacteria root:Host-associated:Human:Digestive system:Intestine 3.0 -class Betaproteobacteria root:Engineered:Food production:Fermented beverages 10.0 +class Betaproteobacteria root:Host-associated:Human:Digestive system:Intestine 4.0 +class Betaproteobacteria root:Engineered:Food production:Fermented beverages 11.0 class Betaproteobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Betaproteobacteria root:Engineered:Wastewater 29.0 class Betaproteobacteria root:Host-associated:Human:Reproductive system:Vagina 8.0 -class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 54.0 -class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral 61.0 -class Betaproteobacteria root:Engineered:Food production:Dairy products 21.0 +class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 57.0 +class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral 62.0 +class Betaproteobacteria root:Engineered:Food production:Dairy products 22.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Contaminated 17.0 class Betaproteobacteria root:Host-associated:Plants:Phylloplane 12.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -class Betaproteobacteria root:Host-associated:Plants:Rhizosphere 62.0 +class Betaproteobacteria root:Host-associated:Plants:Rhizosphere 64.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -class Betaproteobacteria root:Environmental:Terrestrial:Soil 218.0 -class Betaproteobacteria root:Environmental:Aquatic:Marine:Sediment 49.0 -class Betaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +class Betaproteobacteria root:Environmental:Terrestrial:Soil 220.0 +class Betaproteobacteria root:Environmental:Aquatic:Marine:Sediment 50.0 +class Betaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 10.0 +class Betaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 class Betaproteobacteria root:Environmental:Aquatic:Sediment 21.0 class Betaproteobacteria root:Environmental:Aquatic 11.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 4.0 class Betaproteobacteria root:Engineered:Biogas plant:Wet fermentation 6.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 class Betaproteobacteria root:Host-associated:Porifera 8.0 -class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +class Betaproteobacteria root:Engineered:Lab enrichment 9.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Wetlands 8.0 class Betaproteobacteria root:Engineered:Lab Synthesis 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Grasslands 11.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 class Betaproteobacteria root:Host-associated:Birds:Digestive system:Ceca 9.0 +class Betaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 29.0 class Betaproteobacteria root:Host-associated:Human:Digestive system 35.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater 16.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater 17.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 class Betaproteobacteria root:Environmental:Aquatic:Thermal springs 4.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 9.0 @@ -3821,7 +3887,7 @@ class Betaproteobacteria root:Engineered:Solid waste:Composting 21.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Desert 13.0 -class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 36.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 37.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 class Betaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 5.0 @@ -3834,8 +3900,7 @@ class Betaproteobacteria root:Environmental:Terrestrial:Deep subsurface 2.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Betaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 15.0 -class Betaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 27.0 -class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 7.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 8.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 class Betaproteobacteria root:Engineered:Food production:Fermented seafood 2.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic 4.0 @@ -3849,11 +3914,10 @@ class Betaproteobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 class Betaproteobacteria root:Engineered:Wastewater:Industrial wastewater 17.0 class Betaproteobacteria root:Engineered:Modeled 4.0 -class Betaproteobacteria root:Host-associated:Insecta:Digestive system 10.0 +class Betaproteobacteria root:Host-associated:Insecta:Digestive system 11.0 class Betaproteobacteria root:Host-associated 8.0 class Betaproteobacteria root:Host-associated:Mollusca 2.0 -class Betaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -class Betaproteobacteria root:Host-associated:Fish:Digestive system 1.0 +class Betaproteobacteria root:Host-associated:Fish:Digestive system 2.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Mine 4.0 class Betaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Sand 5.0 @@ -3869,15 +3933,17 @@ class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contamina class Betaproteobacteria root:Host-associated:Human:Reproductive system:Female 1.0 class Betaproteobacteria root:Engineered:Solid waste 1.0 class Betaproteobacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 class Betaproteobacteria root:Environmental:Aquatic:Thermal springs:Sediment 2.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 4.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 19.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 21.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -class Betaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +class Betaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 3.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Pelagic 12.0 -class Betaproteobacteria root:Engineered:Wastewater:Water and sludge 18.0 +class Betaproteobacteria root:Engineered:Wastewater:Water and sludge 20.0 +class Betaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Betaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 class Betaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -3889,18 +3955,16 @@ class Betaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-c class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 class Betaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 class Betaproteobacteria root:Host-associated:Reptile:Oral cavity 1.0 -class Betaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 class Betaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 class Betaproteobacteria root:Host-associated:Fish:Digestive system:Intestine 3.0 -class Betaproteobacteria root:Host-associated:Insecta 12.0 +class Betaproteobacteria root:Host-associated:Insecta 13.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 class Betaproteobacteria root:Host-associated:Plants:Phylloplane:Endophytes 2.0 -class Betaproteobacteria root:Engineered:Built environment 13.0 +class Betaproteobacteria root:Engineered:Built environment 14.0 class Betaproteobacteria root:Host-associated:Birds:Digestive system 3.0 -class Betaproteobacteria root:Engineered:Lab enrichment 9.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Boreal forest 2.0 class Betaproteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 class Betaproteobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 @@ -3930,30 +3994,32 @@ class Betaproteobacteria root:Host-associated:Fish:Skin 3.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Betaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Betaproteobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Betaproteobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Betaproteobacteria root:Host-associated:Arthropoda 4.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 -class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Betaproteobacteria root:Host-associated:Fungi 1.0 class Betaproteobacteria root:Engineered:Bioremediation 3.0 class Betaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system 4.0 class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Betaproteobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 class Betaproteobacteria root:Engineered:Bioremediation:Hydrocarbon 2.0 class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 class Betaproteobacteria root:Engineered:Biotransformation 4.0 class Betaproteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 -class Betaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Betaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Betaproteobacteria root:Host-associated:Mammals:Skin 3.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 class Betaproteobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Oil reservoir 1.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Betaproteobacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +class Betaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Soil:Mine drainage 1.0 class Betaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 class Betaproteobacteria root:Host-associated:Birds:Respiratory system 2.0 @@ -3976,6 +4042,7 @@ class Betaproteobacteria root:Host-associated:Mammals:Nervous system:Brain 1.0 class Betaproteobacteria root:Environmental:Terrestrial:Volcanic 3.0 class Betaproteobacteria root:Environmental:Aquatic:Lentic 2.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 +class Betaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Betaproteobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Betaproteobacteria root:Engineered:Solid waste:Composting:Grass 1.0 class Betaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 @@ -3991,79 +4058,82 @@ class Betaproteobacteria root:Environmental:Terrestrial:Agricultural field 1.0 class Betaproteobacteria root:Host-associated:Mammals:Milk 1.0 class Betaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Betaproteobacteria root:Host-associated:Annelida 1.0 -class Betaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Betaproteobacteria root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 class Betaproteobacteria root:Host-associated:Spiralia 1.0 class Betaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Betaproteobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lake 41.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Pond 6.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 26.0 -class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 21.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 28.0 +class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 22.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 class Alphaproteobacteria root:Host-associated:Birds:Digestive system:Fecal 3.0 class Alphaproteobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Alphaproteobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Alphaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 75.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine 347.0 +class Alphaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 78.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine 369.0 class Alphaproteobacteria root:Host-associated:Fish 5.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 19.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 83.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 86.0 class Alphaproteobacteria root:Host-associated:Mammals:Digestive system 13.0 class Alphaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 19.0 class Alphaproteobacteria root:Environmental:Terrestrial:Geologic 3.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Forest soil 28.0 class Alphaproteobacteria root:Environmental:Aquatic:Lentic:Brackish 16.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 18.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 19.0 class Alphaproteobacteria root:Host-associated:Human 12.0 -class Alphaproteobacteria root:Host-associated:Plants 51.0 +class Alphaproteobacteria root:Host-associated:Plants 53.0 class Alphaproteobacteria root:Environmental:Aquatic:Estuary:Sediment 15.0 class Alphaproteobacteria root:Engineered:Food production:Silage fermentation 1.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 4.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Agricultural 51.0 class Alphaproteobacteria root:Engineered:Bioreactor 72.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 8.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 10.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 27.0 -class Alphaproteobacteria root:Engineered:Wastewater:Activated Sludge 63.0 +class Alphaproteobacteria root:Engineered:Wastewater:Activated Sludge 64.0 class Alphaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 class Alphaproteobacteria root:Host-associated:Human:Skin 30.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Permafrost 16.0 -class Alphaproteobacteria root:Mixed 31.0 -class Alphaproteobacteria root:Host-associated:Mammals 15.0 +class Alphaproteobacteria root:Mixed 33.0 +class Alphaproteobacteria root:Host-associated:Mammals 16.0 class Alphaproteobacteria root:Host-associated:Amphibia 5.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system:Intestine 1.0 -class Alphaproteobacteria root:Engineered:Food production:Fermented beverages 9.0 +class Alphaproteobacteria root:Engineered:Food production:Fermented beverages 10.0 class Alphaproteobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Alphaproteobacteria root:Engineered:Wastewater 22.0 class Alphaproteobacteria root:Host-associated:Human:Reproductive system:Vagina 3.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 60.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 63.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system:Oral 10.0 -class Alphaproteobacteria root:Engineered:Food production:Dairy products 20.0 +class Alphaproteobacteria root:Engineered:Food production:Dairy products 21.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Contaminated 16.0 class Alphaproteobacteria root:Host-associated:Plants:Phylloplane 10.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -class Alphaproteobacteria root:Host-associated:Plants:Rhizosphere 64.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 27.0 +class Alphaproteobacteria root:Host-associated:Plants:Rhizosphere 66.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 28.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -class Alphaproteobacteria root:Environmental:Terrestrial:Soil 239.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Sediment 137.0 -class Alphaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +class Alphaproteobacteria root:Environmental:Terrestrial:Soil 242.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Sediment 139.0 +class Alphaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 11.0 +class Alphaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 class Alphaproteobacteria root:Environmental:Aquatic:Sediment 27.0 class Alphaproteobacteria root:Environmental:Aquatic 14.0 +class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Alphaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Alphaproteobacteria root:Engineered:Biogas plant:Wet fermentation 6.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 10.0 class Alphaproteobacteria root:Host-associated:Porifera 20.0 +class Alphaproteobacteria root:Engineered:Lab enrichment 9.0 class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 12.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Wetlands 10.0 class Alphaproteobacteria root:Engineered:Lab Synthesis 1.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Grasslands 18.0 class Alphaproteobacteria root:Host-associated:Birds:Digestive system:Ceca 2.0 class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Alphaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 32.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system 10.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater 16.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater 17.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 6.0 class Alphaproteobacteria root:Environmental:Aquatic:Thermal springs 4.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 21.0 @@ -4077,7 +4147,7 @@ class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Large in class Alphaproteobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 class Alphaproteobacteria root:Host-associated:Algae:Red algae 9.0 class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 -class Alphaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 5.0 +class Alphaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 6.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 12.0 class Alphaproteobacteria root:Engineered:Lab enrichment:Defined media 11.0 class Alphaproteobacteria root:Host-associated:Plants:Root 12.0 @@ -4088,8 +4158,7 @@ class Alphaproteobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Alphaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Alphaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 4.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 17.0 -class Alphaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 30.0 -class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 5.0 +class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 6.0 class Alphaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 class Alphaproteobacteria root:Engineered:Food production:Fermented seafood 2.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic 5.0 @@ -4102,12 +4171,11 @@ class Alphaproteobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5. class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 7.0 class Alphaproteobacteria root:Engineered:Wastewater:Industrial wastewater 17.0 class Alphaproteobacteria root:Engineered:Modeled 4.0 -class Alphaproteobacteria root:Host-associated:Insecta:Digestive system 10.0 +class Alphaproteobacteria root:Host-associated:Insecta:Digestive system 11.0 class Alphaproteobacteria root:Host-associated 9.0 class Alphaproteobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class Alphaproteobacteria root:Host-associated:Mollusca 7.0 -class Alphaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -class Alphaproteobacteria root:Host-associated:Fish:Digestive system 2.0 +class Alphaproteobacteria root:Host-associated:Fish:Digestive system 3.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Mine 4.0 class Alphaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Sand 7.0 @@ -4122,16 +4190,17 @@ class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water:D class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 8.0 class Alphaproteobacteria root:Host-associated:Human:Reproductive system:Female 2.0 class Alphaproteobacteria root:Engineered:Solid waste 1.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 class Alphaproteobacteria root:Environmental:Aquatic:Thermal springs:Sediment 5.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 20.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 22.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 -class Alphaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 +class Alphaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 7.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Pelagic 14.0 -class Alphaproteobacteria root:Engineered:Wastewater:Water and sludge 18.0 -class Alphaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Alphaproteobacteria root:Engineered:Wastewater:Water and sludge 20.0 +class Alphaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +class Alphaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 8.0 class Alphaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 class Alphaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -4143,18 +4212,16 @@ class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil- class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 7.0 class Alphaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 class Alphaproteobacteria root:Host-associated:Reptile:Oral cavity 1.0 -class Alphaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 class Alphaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 class Alphaproteobacteria root:Host-associated:Fish:Digestive system:Intestine 4.0 -class Alphaproteobacteria root:Host-associated:Insecta 14.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 +class Alphaproteobacteria root:Host-associated:Insecta 15.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 3.0 class Alphaproteobacteria root:Host-associated:Plants:Phylloplane:Endophytes 2.0 -class Alphaproteobacteria root:Engineered:Built environment 13.0 +class Alphaproteobacteria root:Engineered:Built environment 14.0 class Alphaproteobacteria root:Host-associated:Birds:Digestive system 4.0 -class Alphaproteobacteria root:Engineered:Lab enrichment 9.0 class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Boreal forest 2.0 class Alphaproteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 class Alphaproteobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 @@ -4183,13 +4250,13 @@ class Alphaproteobacteria root:Engineered:Industrial production 1.0 class Alphaproteobacteria root:Host-associated:Fish:Skin 3.0 class Alphaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 7.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Alphaproteobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Alphaproteobacteria root:Environmental:Air 1.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Alphaproteobacteria root:Host-associated:Arthropoda 4.0 class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +class Alphaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 6.0 class Alphaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Alphaproteobacteria root:Host-associated:Fungi 1.0 class Alphaproteobacteria root:Engineered:Bioremediation 3.0 @@ -4201,7 +4268,7 @@ class Alphaproteobacteria root:Engineered:Bioremediation:Hydrocarbon 1.0 class Alphaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 class Alphaproteobacteria root:Engineered:Biotransformation 4.0 class Alphaproteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 -class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Alphaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Alphaproteobacteria root:Host-associated:Mammals:Skin 3.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 class Alphaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 @@ -4235,6 +4302,7 @@ class Alphaproteobacteria root:Environmental:Terrestrial:Volcanic 3.0 class Alphaproteobacteria root:Environmental:Aquatic:Lentic 2.0 class Alphaproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 class Alphaproteobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +class Alphaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Alphaproteobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Alphaproteobacteria root:Host-associated:Protozoa 1.0 class Alphaproteobacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -4253,69 +4321,71 @@ class Alphaproteobacteria root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Alphaproteobacteria root:Host-associated:Invertebrates:Cnidaria 1.0 class Alphaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 class Alphaproteobacteria root:Environmental:Terrestrial:Agricultural field 1.0 +class Alphaproteobacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Alphaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 class Alphaproteobacteria root:Engineered:Solid waste:Solid animal waste 1.0 class Alphaproteobacteria root:Host-associated:Annelida 1.0 -class Alphaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Alphaproteobacteria root:Host-associated:Spiralia 1.0 class Alphaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Alphaproteobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Lake 31.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Pond 3.0 -class Actinobacteria root:Environmental:Aquatic:Freshwater:Sediment 15.0 +class Actinobacteria root:Environmental:Aquatic:Freshwater:Sediment 17.0 class Actinobacteria root:Host-associated:Mammals:Digestive system:Fecal 31.0 -class Actinobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +class Actinobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 class Actinobacteria root:Host-associated:Birds:Digestive system:Fecal 6.0 class Actinobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 class Actinobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 196.0 -class Actinobacteria root:Environmental:Aquatic:Marine 219.0 +class Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 206.0 +class Actinobacteria root:Environmental:Aquatic:Marine 232.0 class Actinobacteria root:Host-associated:Fish 6.0 class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 -class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic 50.0 -class Actinobacteria root:Host-associated:Mammals:Digestive system 16.0 +class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic 52.0 +class Actinobacteria root:Host-associated:Mammals:Digestive system 17.0 class Actinobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 class Actinobacteria root:Environmental:Terrestrial:Geologic 3.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Forest soil 27.0 class Actinobacteria root:Environmental:Aquatic:Lentic:Brackish 2.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 -class Actinobacteria root:Host-associated:Human 23.0 -class Actinobacteria root:Host-associated:Plants 43.0 +class Actinobacteria root:Host-associated:Human 24.0 +class Actinobacteria root:Host-associated:Plants 44.0 class Actinobacteria root:Environmental:Aquatic:Estuary:Sediment 7.0 class Actinobacteria root:Engineered:Food production:Silage fermentation 1.0 -class Actinobacteria root:Host-associated:Human:Digestive system:Large intestine 14.0 +class Actinobacteria root:Host-associated:Human:Digestive system:Large intestine 15.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Agricultural 42.0 class Actinobacteria root:Engineered:Bioreactor 75.0 -class Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 +class Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 8.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 -class Actinobacteria root:Engineered:Wastewater:Activated Sludge 66.0 +class Actinobacteria root:Engineered:Wastewater:Activated Sludge 67.0 class Actinobacteria root:Host-associated:Human:Skin 30.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Permafrost 13.0 -class Actinobacteria root:Mixed 27.0 +class Actinobacteria root:Mixed 29.0 class Actinobacteria root:Host-associated:Mammals 15.0 class Actinobacteria root:Host-associated:Amphibia 5.0 -class Actinobacteria root:Host-associated:Human:Digestive system:Intestine 3.0 -class Actinobacteria root:Engineered:Food production:Fermented beverages 10.0 +class Actinobacteria root:Host-associated:Human:Digestive system:Intestine 4.0 +class Actinobacteria root:Engineered:Food production:Fermented beverages 11.0 class Actinobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Actinobacteria root:Engineered:Wastewater 18.0 class Actinobacteria root:Host-associated:Human:Reproductive system:Vagina 16.0 -class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 53.0 -class Actinobacteria root:Host-associated:Human:Digestive system:Oral 64.0 -class Actinobacteria root:Engineered:Food production:Dairy products 26.0 +class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 54.0 +class Actinobacteria root:Host-associated:Human:Digestive system:Oral 65.0 +class Actinobacteria root:Engineered:Food production:Dairy products 27.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Contaminated 15.0 class Actinobacteria root:Host-associated:Plants:Phylloplane 11.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -class Actinobacteria root:Host-associated:Plants:Rhizosphere 56.0 +class Actinobacteria root:Host-associated:Plants:Rhizosphere 58.0 class Actinobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 10.0 -class Actinobacteria root:Environmental:Terrestrial:Soil 184.0 +class Actinobacteria root:Environmental:Terrestrial:Soil 187.0 class Actinobacteria root:Environmental:Aquatic:Marine:Sediment 47.0 -class Actinobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 10.0 +class Actinobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 class Actinobacteria root:Environmental:Aquatic:Sediment 11.0 class Actinobacteria root:Environmental:Aquatic 10.0 +class Actinobacteria root:Host-associated:Mammals:Digestive system:Midgut 4.0 class Actinobacteria root:Engineered:Biogas plant:Wet fermentation 5.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 class Actinobacteria root:Host-associated:Porifera 3.0 +class Actinobacteria root:Engineered:Lab enrichment 7.0 class Actinobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Wetlands 4.0 class Actinobacteria root:Engineered:Lab Synthesis 1.0 @@ -4323,6 +4393,7 @@ class Actinobacteria root:Environmental:Terrestrial:Soil:Grasslands 17.0 class Actinobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 class Actinobacteria root:Host-associated:Birds:Digestive system:Ceca 3.0 class Actinobacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Actinobacteria root:Host-associated:Plants:Rhizosphere:Soil 28.0 class Actinobacteria root:Host-associated:Human:Digestive system 34.0 class Actinobacteria root:Environmental:Aquatic:Freshwater 11.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 11.0 @@ -4332,10 +4403,10 @@ class Actinobacteria root:Engineered:Solid waste:Composting 24.0 class Actinobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 7.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Desert 14.0 -class Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 26.0 +class Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 27.0 class Actinobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 13.0 class Actinobacteria root:Host-associated:Algae:Red algae 2.0 -class Actinobacteria root:Host-associated:Arthropoda:Digestive system:Gut 6.0 +class Actinobacteria root:Host-associated:Arthropoda:Digestive system:Gut 7.0 class Actinobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 class Actinobacteria root:Engineered:Lab enrichment:Defined media 10.0 class Actinobacteria root:Host-associated:Plants:Root 11.0 @@ -4345,8 +4416,7 @@ class Actinobacteria root:Environmental:Terrestrial:Deep subsurface 4.0 class Actinobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Actinobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 11.0 -class Actinobacteria root:Host-associated:Plants:Rhizosphere:Soil 26.0 -class Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine 8.0 +class Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine 9.0 class Actinobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 class Actinobacteria root:Engineered:Food production:Fermented seafood 2.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Lentic 4.0 @@ -4360,7 +4430,7 @@ class Actinobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 class Actinobacteria root:Engineered:Wastewater:Industrial wastewater 10.0 class Actinobacteria root:Engineered:Modeled 3.0 -class Actinobacteria root:Host-associated:Insecta:Digestive system 7.0 +class Actinobacteria root:Host-associated:Insecta:Digestive system 8.0 class Actinobacteria root:Host-associated 8.0 class Actinobacteria root:Host-associated:Mollusca 2.0 class Actinobacteria root:Host-associated:Fish:Digestive system 1.0 @@ -4379,15 +4449,16 @@ class Actinobacteria root:Environmental:Aquatic:Freshwater:Drinking water:Delive class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 class Actinobacteria root:Host-associated:Human:Reproductive system:Female 2.0 class Actinobacteria root:Engineered:Solid waste 1.0 -class Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 +class Actinobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 class Actinobacteria root:Environmental:Aquatic:Thermal springs:Sediment 3.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 3.0 -class Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater 12.0 +class Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater 14.0 class Actinobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -class Actinobacteria root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +class Actinobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 class Actinobacteria root:Environmental:Aquatic:Marine:Pelagic 12.0 -class Actinobacteria root:Engineered:Wastewater:Water and sludge 14.0 +class Actinobacteria root:Engineered:Wastewater:Water and sludge 16.0 +class Actinobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 8.0 class Actinobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 5.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Actinobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -4399,17 +4470,15 @@ class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-conta class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 class Actinobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 class Actinobacteria root:Host-associated:Reptile:Oral cavity 1.0 -class Actinobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 8.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 class Actinobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Crop 2.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 class Actinobacteria root:Host-associated:Fish:Digestive system:Intestine 2.0 -class Actinobacteria root:Host-associated:Insecta 12.0 +class Actinobacteria root:Host-associated:Insecta 13.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -class Actinobacteria root:Engineered:Built environment 14.0 +class Actinobacteria root:Engineered:Built environment 15.0 class Actinobacteria root:Host-associated:Birds:Digestive system 5.0 -class Actinobacteria root:Engineered:Lab enrichment 7.0 class Actinobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 class Actinobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 @@ -4435,7 +4504,7 @@ class Actinobacteria root:Host-associated:Fish:Skin 2.0 class Actinobacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 5.0 class Actinobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -class Actinobacteria root:Host-associated:Mammals:Digestive system:Midgut 3.0 +class Actinobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Actinobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Actinobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Actinobacteria root:Host-associated:Arthropoda 3.0 @@ -4446,13 +4515,14 @@ class Actinobacteria root:Engineered:Bioremediation 3.0 class Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 class Actinobacteria root:Host-associated:Human:Respiratory system 4.0 class Actinobacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Actinobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Actinobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 class Actinobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 class Actinobacteria root:Engineered:Bioremediation:Hydrocarbon 1.0 class Actinobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 class Actinobacteria root:Engineered:Biotransformation 3.0 class Actinobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -class Actinobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Actinobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Actinobacteria root:Host-associated:Mammals:Skin 3.0 class Actinobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Actinobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 @@ -4476,6 +4546,7 @@ class Actinobacteria root:Host-associated:Mammals:Nervous system:Brain 1.0 class Actinobacteria root:Environmental:Terrestrial:Volcanic 2.0 class Actinobacteria root:Environmental:Aquatic:Lentic 2.0 class Actinobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 +class Actinobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Actinobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Actinobacteria root:Host-associated:Protozoa 1.0 class Actinobacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -4490,14 +4561,13 @@ class Actinobacteria root:Environmental:Terrestrial:Agricultural field 1.0 class Actinobacteria root:Host-associated:Mammals:Milk 1.0 class Actinobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Actinobacteria root:Host-associated:Annelida 1.0 -class Actinobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Actinobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Lake 20.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Pond 2.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Sediment 7.0 -class Acidimicrobiia root:Environmental:Aquatic:Marine 165.0 +class Acidimicrobiia root:Environmental:Aquatic:Marine 170.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 -class Acidimicrobiia root:Environmental:Aquatic:Marine:Oceanic 45.0 +class Acidimicrobiia root:Environmental:Aquatic:Marine:Oceanic 46.0 class Acidimicrobiia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Forest soil 4.0 class Acidimicrobiia root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -4518,7 +4588,7 @@ class Acidimicrobiia root:Host-associated:Mammals 3.0 class Acidimicrobiia root:Host-associated:Amphibia 1.0 class Acidimicrobiia root:Engineered:Wastewater 4.0 class Acidimicrobiia root:Host-associated:Human:Reproductive system:Vagina 1.0 -class Acidimicrobiia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 52.0 +class Acidimicrobiia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 54.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Contaminated 5.0 class Acidimicrobiia root:Host-associated:Plants:Phylloplane 1.0 class Acidimicrobiia root:Host-associated:Plants:Rhizosphere 7.0 @@ -4531,8 +4601,10 @@ class Acidimicrobiia root:Environmental:Aquatic:Sediment 6.0 class Acidimicrobiia root:Environmental:Aquatic 3.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Acidimicrobiia root:Host-associated:Porifera 18.0 +class Acidimicrobiia root:Engineered:Lab enrichment 1.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Wetlands 3.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Grasslands 5.0 +class Acidimicrobiia root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater 3.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 9.0 @@ -4542,13 +4614,12 @@ class Acidimicrobiia root:Engineered:Solid waste:Composting 5.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Drinking water 2.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Desert 8.0 class Acidimicrobiia root:Host-associated:Algae:Red algae 7.0 -class Acidimicrobiia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +class Acidimicrobiia root:Host-associated:Arthropoda:Digestive system:Gut 2.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class Acidimicrobiia root:Host-associated:Plants:Root 1.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 5.0 class Acidimicrobiia root:Environmental:Terrestrial:Deep subsurface 1.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -class Acidimicrobiia root:Host-associated:Plants:Rhizosphere:Soil 4.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Lentic 3.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 5.0 class Acidimicrobiia root:Environmental:Aquatic:Estuary 30.0 @@ -4571,15 +4642,14 @@ class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Groundwater 6.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Marginal Sea 5.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Pelagic 11.0 class Acidimicrobiia root:Engineered:Wastewater:Water and sludge 4.0 +class Acidimicrobiia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Acidimicrobiia root:Host-associated:Invertebrates:Echinodermata 1.0 class Acidimicrobiia root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 class Acidimicrobiia root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 2.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -class Acidimicrobiia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Acidimicrobiia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Acidimicrobiia root:Host-associated:Insecta 1.0 -class Acidimicrobiia root:Engineered:Lab enrichment 1.0 class Acidimicrobiia root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 class Acidimicrobiia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 @@ -4611,79 +4681,83 @@ class Acidimicrobiia root:Engineered:Wastewater:Nutrient removal:Biological phos class Acidimicrobiia root 1.0 class Acidimicrobiia root:Environmental:Terrestrial:Volcanic 3.0 class Acidimicrobiia root:Environmental:Aquatic:Lentic 2.0 +class Acidimicrobiia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Acidimicrobiia root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 class Acidimicrobiia root:Host-associated:Algae:Brown Algae 1.0 class Acidimicrobiia root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Acidimicrobiia root:Environmental:Terrestrial:Agricultural field 1.0 -class Acidimicrobiia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lake 32.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Pond 6.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 29.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 47.0 -class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 31.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 49.0 +class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 class Gammaproteobacteria root:Host-associated:Birds:Digestive system:Fecal 8.0 class Gammaproteobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 4.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Gammaproteobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Gammaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 198.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine 351.0 +class Gammaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 209.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine 373.0 class Gammaproteobacteria root:Host-associated:Fish 6.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 20.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 83.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system 26.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 86.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system 27.0 class Gammaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 17.0 class Gammaproteobacteria root:Environmental:Terrestrial:Geologic 3.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Forest soil 26.0 class Gammaproteobacteria root:Environmental:Aquatic:Lentic:Brackish 6.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 21.0 -class Gammaproteobacteria root:Host-associated:Human 22.0 -class Gammaproteobacteria root:Host-associated:Plants 56.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 22.0 +class Gammaproteobacteria root:Host-associated:Human 23.0 +class Gammaproteobacteria root:Host-associated:Plants 57.0 class Gammaproteobacteria root:Environmental:Aquatic:Estuary:Sediment 15.0 class Gammaproteobacteria root:Engineered:Food production:Silage fermentation 1.0 -class Gammaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 15.0 +class Gammaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 16.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Agricultural 47.0 class Gammaproteobacteria root:Engineered:Bioreactor 57.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 9.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 29.0 -class Gammaproteobacteria root:Engineered:Wastewater:Activated Sludge 68.0 +class Gammaproteobacteria root:Engineered:Wastewater:Activated Sludge 69.0 class Gammaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 class Gammaproteobacteria root:Host-associated:Human:Skin 30.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Permafrost 10.0 -class Gammaproteobacteria root:Mixed 32.0 -class Gammaproteobacteria root:Host-associated:Mammals 16.0 +class Gammaproteobacteria root:Mixed 33.0 +class Gammaproteobacteria root:Host-associated:Mammals 17.0 class Gammaproteobacteria root:Host-associated:Amphibia 5.0 -class Gammaproteobacteria root:Host-associated:Human:Digestive system:Intestine 3.0 -class Gammaproteobacteria root:Engineered:Food production:Fermented beverages 12.0 +class Gammaproteobacteria root:Host-associated:Human:Digestive system:Intestine 4.0 +class Gammaproteobacteria root:Engineered:Food production:Fermented beverages 13.0 class Gammaproteobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Gammaproteobacteria root:Engineered:Wastewater 28.0 class Gammaproteobacteria root:Host-associated:Human:Reproductive system:Vagina 15.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 60.0 -class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral 59.0 -class Gammaproteobacteria root:Engineered:Food production:Dairy products 26.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 63.0 +class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral 60.0 +class Gammaproteobacteria root:Engineered:Food production:Dairy products 28.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Contaminated 17.0 class Gammaproteobacteria root:Host-associated:Plants:Phylloplane 12.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Silt 1.0 -class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere 62.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 30.0 -class Gammaproteobacteria root:Environmental:Terrestrial:Soil 221.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Sediment 155.0 -class Gammaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 +class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere 64.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 31.0 +class Gammaproteobacteria root:Environmental:Terrestrial:Soil 224.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Sediment 158.0 +class Gammaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 14.0 +class Gammaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 class Gammaproteobacteria root:Environmental:Aquatic:Sediment 30.0 class Gammaproteobacteria root:Environmental:Aquatic 14.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Gammaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Gammaproteobacteria root:Engineered:Biogas plant:Wet fermentation 5.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 class Gammaproteobacteria root:Host-associated:Porifera 20.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 +class Gammaproteobacteria root:Engineered:Lab enrichment 10.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 18.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Wetlands 10.0 class Gammaproteobacteria root:Engineered:Lab Synthesis 1.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Grasslands 15.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 class Gammaproteobacteria root:Host-associated:Birds:Digestive system:Ceca 8.0 class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 32.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system 37.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater 12.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater 13.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 8.0 class Gammaproteobacteria root:Environmental:Aquatic:Thermal springs 2.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 20.0 @@ -4693,11 +4767,11 @@ class Gammaproteobacteria root:Engineered:Solid waste:Composting 24.0 class Gammaproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water 5.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Desert 14.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 40.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 41.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 10.0 class Gammaproteobacteria root:Host-associated:Algae:Red algae 9.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 -class Gammaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 6.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 +class Gammaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 7.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 12.0 class Gammaproteobacteria root:Engineered:Lab enrichment:Defined media 12.0 class Gammaproteobacteria root:Host-associated:Plants:Root 12.0 @@ -4708,8 +4782,7 @@ class Gammaproteobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 class Gammaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 19.0 -class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 30.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 11.0 +class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 12.0 class Gammaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 class Gammaproteobacteria root:Engineered:Food production:Fermented seafood 2.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic 4.0 @@ -4723,12 +4796,11 @@ class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5. class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 class Gammaproteobacteria root:Engineered:Wastewater:Industrial wastewater 17.0 class Gammaproteobacteria root:Engineered:Modeled 5.0 -class Gammaproteobacteria root:Host-associated:Insecta:Digestive system 10.0 +class Gammaproteobacteria root:Host-associated:Insecta:Digestive system 11.0 class Gammaproteobacteria root:Host-associated 12.0 class Gammaproteobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class Gammaproteobacteria root:Host-associated:Mollusca 7.0 -class Gammaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -class Gammaproteobacteria root:Host-associated:Fish:Digestive system 2.0 +class Gammaproteobacteria root:Host-associated:Fish:Digestive system 3.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Mine 4.0 class Gammaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Sand 6.0 @@ -4739,21 +4811,22 @@ class Gammaproteobacteria root:Environmental:Aquatic:Marine:Brackish 12.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Clay 3.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Crop:Agricultural land 4.0 class Gammaproteobacteria root:Host-associated:Fish:Digestive system:Foregut 4.0 -class Gammaproteobacteria root:Engineered:Bioreactor:Continuous culture 12.0 +class Gammaproteobacteria root:Engineered:Bioreactor:Continuous culture 13.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 2.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 8.0 class Gammaproteobacteria root:Host-associated:Human:Reproductive system:Female 2.0 class Gammaproteobacteria root:Engineered:Solid waste 1.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 class Gammaproteobacteria root:Environmental:Aquatic:Thermal springs:Sediment 4.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 19.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 21.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 4.0 -class Gammaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +class Gammaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Pelagic 14.0 -class Gammaproteobacteria root:Engineered:Wastewater:Water and sludge 23.0 -class Gammaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Gammaproteobacteria root:Engineered:Wastewater:Water and sludge 25.0 +class Gammaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +class Gammaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 12.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 class Gammaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 4.0 @@ -4767,18 +4840,17 @@ class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil- class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 11.0 class Gammaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 class Gammaproteobacteria root:Host-associated:Reptile:Oral cavity 1.0 -class Gammaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 +class Gammaproteobacteria root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Ice 6.0 class Gammaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Crop 3.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 class Gammaproteobacteria root:Host-associated:Fish:Digestive system:Intestine 4.0 -class Gammaproteobacteria root:Host-associated:Insecta 14.0 +class Gammaproteobacteria root:Host-associated:Insecta 15.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 class Gammaproteobacteria root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -class Gammaproteobacteria root:Engineered:Built environment 13.0 +class Gammaproteobacteria root:Engineered:Built environment 14.0 class Gammaproteobacteria root:Host-associated:Birds:Digestive system 6.0 -class Gammaproteobacteria root:Engineered:Lab enrichment 10.0 class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Boreal forest 1.0 class Gammaproteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 class Gammaproteobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 @@ -4810,14 +4882,14 @@ class Gammaproteobacteria root:Host-associated:Fish:Skin 3.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Gammaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 7.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Gammaproteobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Gammaproteobacteria root:Environmental:Air 2.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Gammaproteobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Gammaproteobacteria root:Host-associated:Arthropoda 4.0 class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +class Gammaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 class Gammaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Gammaproteobacteria root:Host-associated:Fungi 1.0 class Gammaproteobacteria root:Engineered:Bioremediation 3.0 @@ -4830,10 +4902,10 @@ class Gammaproteobacteria root:Engineered:Bioremediation:Hydrocarbon 2.0 class Gammaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 class Gammaproteobacteria root:Engineered:Biotransformation 4.0 class Gammaproteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 -class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Gammaproteobacteria root:Host-associated:Mammals:Skin 3.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 -class Gammaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +class Gammaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 class Gammaproteobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Gammaproteobacteria root:Environmental:Terrestrial:Oil reservoir 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 @@ -4867,6 +4939,7 @@ class Gammaproteobacteria root:Environmental:Terrestrial:Volcanic 3.0 class Gammaproteobacteria root:Environmental:Aquatic:Lentic 1.0 class Gammaproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +class Gammaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Gammaproteobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Gammaproteobacteria root:Host-associated:Protozoa 1.0 class Gammaproteobacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -4886,10 +4959,10 @@ class Gammaproteobacteria root:Environmental:Terrestrial:Soil:Clay:Oil-contamina class Gammaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 class Gammaproteobacteria root:Environmental:Terrestrial:Agricultural field 1.0 class Gammaproteobacteria root:Host-associated:Mammals:Milk 1.0 +class Gammaproteobacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Gammaproteobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Gammaproteobacteria root:Engineered:Solid waste:Solid animal waste 1.0 class Gammaproteobacteria root:Host-associated:Annelida 1.0 -class Gammaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Gammaproteobacteria root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 class Gammaproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Gammaproteobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 @@ -4915,6 +4988,7 @@ class Opitutae root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Opitutae root:Environmental:Aquatic:Sediment 1.0 class Opitutae root:Environmental:Aquatic 2.0 class Opitutae root:Host-associated:Porifera 1.0 +class Opitutae root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Opitutae root:Environmental:Aquatic:Freshwater 2.0 class Opitutae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 4.0 class Opitutae root:Environmental:Aquatic:Marine:Coastal 6.0 @@ -4922,7 +4996,6 @@ class Opitutae root:Engineered:Solid waste:Composting 6.0 class Opitutae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 class Opitutae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Opitutae root:Engineered:Food production 1.0 -class Opitutae root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Opitutae root:Environmental:Aquatic:Freshwater:Lentic 2.0 class Opitutae root:Environmental:Aquatic:Estuary 17.0 class Opitutae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -4933,13 +5006,14 @@ class Opitutae root:Environmental:Terrestrial:Soil:Mine 1.0 class Opitutae root:Environmental:Aquatic:Marine:Brackish 1.0 class Opitutae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 class Opitutae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -class Opitutae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 +class Opitutae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 class Opitutae root:Environmental:Aquatic:Marine:Pelagic 4.0 class Opitutae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Opitutae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Opitutae root:Engineered:Industrial production 1.0 class Opitutae root:Host-associated:Fish:Skin 1.0 class Opitutae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +class Opitutae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Opitutae root:Host-associated:Algae:Brown Algae 1.0 class Methylacidiphilae root:Environmental:Aquatic:Freshwater:Lake 2.0 class Methylacidiphilae root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -4948,12 +5022,12 @@ class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lake 17.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Pond 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Sediment 5.0 class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Fecal 21.0 -class Verrucomicrobiae root:Host-associated:Human:Digestive system:Large intestine:Fecal 91.0 -class Verrucomicrobiae root:Environmental:Aquatic:Marine 119.0 +class Verrucomicrobiae root:Host-associated:Human:Digestive system:Large intestine:Fecal 93.0 +class Verrucomicrobiae root:Environmental:Aquatic:Marine 122.0 class Verrucomicrobiae root:Host-associated:Fish 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic 22.0 -class Verrucomicrobiae root:Host-associated:Mammals:Digestive system 15.0 +class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic 23.0 +class Verrucomicrobiae root:Host-associated:Mammals:Digestive system 16.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Forest soil 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 class Verrucomicrobiae root:Host-associated:Human 1.0 @@ -4964,7 +5038,7 @@ class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Agricultural 3.0 class Verrucomicrobiae root:Engineered:Bioreactor 7.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 -class Verrucomicrobiae root:Engineered:Wastewater:Activated Sludge 5.0 +class Verrucomicrobiae root:Engineered:Wastewater:Activated Sludge 6.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Permafrost 2.0 class Verrucomicrobiae root:Mixed 7.0 class Verrucomicrobiae root:Host-associated:Mammals 2.0 @@ -4979,14 +5053,18 @@ class Verrucomicrobiae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil 27.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Sediment 25.0 class Verrucomicrobiae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Verrucomicrobiae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Sediment 6.0 class Verrucomicrobiae root:Environmental:Aquatic 4.0 +class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Midgut 5.0 class Verrucomicrobiae root:Engineered:Biogas plant:Wet fermentation 2.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 class Verrucomicrobiae root:Host-associated:Porifera 1.0 +class Verrucomicrobiae root:Engineered:Lab enrichment 1.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Grasslands 2.0 class Verrucomicrobiae root:Host-associated:Birds:Digestive system:Ceca 1.0 +class Verrucomicrobiae root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Verrucomicrobiae root:Host-associated:Human:Digestive system 7.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -5004,8 +5082,7 @@ class Verrucomicrobiae root:Host-associated:Plants:Root 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 class Verrucomicrobiae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -class Verrucomicrobiae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Large intestine 6.0 +class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Large intestine 7.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Estuary 6.0 @@ -5022,7 +5099,7 @@ class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 class Verrucomicrobiae root:Engineered:Bioreactor:Continuous culture 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 class Verrucomicrobiae root:Engineered:Solid waste 1.0 -class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 @@ -5037,11 +5114,10 @@ class Verrucomicrobiae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-con class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 class Verrucomicrobiae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Verrucomicrobiae root:Host-associated:Fish:Digestive system:Intestine 1.0 -class Verrucomicrobiae root:Host-associated:Insecta 1.0 +class Verrucomicrobiae root:Host-associated:Insecta 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Verrucomicrobiae root:Engineered:Built environment 1.0 class Verrucomicrobiae root:Host-associated:Birds:Digestive system 1.0 -class Verrucomicrobiae root:Engineered:Lab enrichment 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Verrucomicrobiae root:Host-associated:Animal:Digestive system:Fecal 1.0 class Verrucomicrobiae root:Host-associated:Algae 2.0 @@ -5050,13 +5126,14 @@ class Verrucomicrobiae root:Host-associated:Birds 1.0 class Verrucomicrobiae root:Environmental 1.0 class Verrucomicrobiae root:Environmental:Aquatic:Aquaculture 2.0 class Verrucomicrobiae root:Host-associated:Fish:Skin 2.0 -class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Midgut 3.0 class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 +class Verrucomicrobiae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Verrucomicrobiae root:Host-associated:Fungi 1.0 class Verrucomicrobiae root:Engineered:Bioremediation 2.0 class Verrucomicrobiae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 class Verrucomicrobiae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +class Verrucomicrobiae root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Verrucomicrobiae root:Host-associated:Mollusca:Digestive system 1.0 class Verrucomicrobiae root:Host-associated:Human:Circulatory system:Blood 1.0 class Verrucomicrobiae root:Host-associated:Cnidaria 1.0 @@ -5069,64 +5146,68 @@ class Verrucomicrobiae root:Engineered:Wastewater:Nutrient removal:Nitrogen remo class Verrucomicrobiae root:Host-associated:Mammals:Excretory system 1.0 class Verrucomicrobiae root:Host-associated:Algae:Brown Algae 1.0 class Verrucomicrobiae root:Host-associated:Mammals:Milk 1.0 +class Verrucomicrobiae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lake 23.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Pond 5.0 -class Flavobacteriia root:Environmental:Aquatic:Freshwater:Sediment 7.0 +class Flavobacteriia root:Environmental:Aquatic:Freshwater:Sediment 8.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system:Fecal 6.0 -class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 +class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 class Flavobacteriia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Flavobacteriia root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -class Flavobacteriia root:Environmental:Aquatic:Marine 293.0 +class Flavobacteriia root:Environmental:Aquatic:Marine 315.0 class Flavobacteriia root:Host-associated:Fish 5.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic 75.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic 78.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system 3.0 class Flavobacteriia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 class Flavobacteriia root:Environmental:Terrestrial:Geologic 2.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Forest soil 2.0 class Flavobacteriia root:Environmental:Aquatic:Lentic:Brackish 7.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 12.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 13.0 class Flavobacteriia root:Host-associated:Human 11.0 class Flavobacteriia root:Host-associated:Plants 15.0 class Flavobacteriia root:Environmental:Aquatic:Estuary:Sediment 11.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Large intestine 1.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Agricultural 4.0 class Flavobacteriia root:Engineered:Bioreactor 23.0 -class Flavobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 +class Flavobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 9.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 11.0 -class Flavobacteriia root:Engineered:Wastewater:Activated Sludge 22.0 +class Flavobacteriia root:Engineered:Wastewater:Activated Sludge 23.0 class Flavobacteriia root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 class Flavobacteriia root:Host-associated:Human:Skin 21.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Permafrost 1.0 -class Flavobacteriia root:Mixed 15.0 +class Flavobacteriia root:Mixed 16.0 class Flavobacteriia root:Host-associated:Mammals 4.0 class Flavobacteriia root:Host-associated:Amphibia 4.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Intestine 1.0 -class Flavobacteriia root:Engineered:Food production:Fermented beverages 2.0 +class Flavobacteriia root:Engineered:Food production:Fermented beverages 3.0 class Flavobacteriia root:Engineered:Wastewater 12.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 59.0 -class Flavobacteriia root:Host-associated:Human:Digestive system:Oral 48.0 -class Flavobacteriia root:Engineered:Food production:Dairy products 20.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 61.0 +class Flavobacteriia root:Host-associated:Human:Digestive system:Oral 49.0 +class Flavobacteriia root:Engineered:Food production:Dairy products 21.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Contaminated 4.0 class Flavobacteriia root:Host-associated:Plants:Phylloplane 8.0 class Flavobacteriia root:Host-associated:Plants:Rhizosphere 15.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Coastal:Sediment 23.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Coastal:Sediment 24.0 class Flavobacteriia root:Environmental:Terrestrial:Soil 34.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Sediment 90.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Sediment 91.0 class Flavobacteriia root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lotic 6.0 class Flavobacteriia root:Environmental:Aquatic:Sediment 11.0 class Flavobacteriia root:Environmental:Aquatic 10.0 +class Flavobacteriia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Flavobacteriia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Flavobacteriia root:Engineered:Biogas plant:Wet fermentation 1.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 class Flavobacteriia root:Host-associated:Porifera 12.0 +class Flavobacteriia root:Engineered:Lab enrichment 6.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Wetlands 3.0 class Flavobacteriia root:Engineered:Lab Synthesis 1.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Flavobacteriia root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Flavobacteriia root:Host-associated:Human:Digestive system 5.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater 10.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -5141,7 +5222,7 @@ class Flavobacteriia root:Environmental:Terrestrial:Soil:Desert 4.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 9.0 class Flavobacteriia root:Host-associated:Algae:Red algae 9.0 -class Flavobacteriia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +class Flavobacteriia root:Host-associated:Arthropoda:Digestive system:Gut 2.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Hydrothermal vents 8.0 class Flavobacteriia root:Engineered:Lab enrichment:Defined media 1.0 class Flavobacteriia root:Host-associated:Plants:Root 4.0 @@ -5151,8 +5232,7 @@ class Flavobacteriia root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Flavobacteriia root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Flavobacteriia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -class Flavobacteriia root:Host-associated:Plants:Rhizosphere:Soil 5.0 -class Flavobacteriia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +class Flavobacteriia root:Host-associated:Mammals:Digestive system:Large intestine 2.0 class Flavobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal 3.0 class Flavobacteriia root:Engineered:Food production:Fermented seafood 2.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lentic 4.0 @@ -5163,11 +5243,11 @@ class Flavobacteriia root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Flavobacteriia root:Engineered:Wastewater:Industrial wastewater 8.0 class Flavobacteriia root:Engineered:Modeled 3.0 -class Flavobacteriia root:Host-associated:Insecta:Digestive system 6.0 +class Flavobacteriia root:Host-associated:Insecta:Digestive system 7.0 class Flavobacteriia root:Host-associated 5.0 class Flavobacteriia root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class Flavobacteriia root:Host-associated:Mollusca 4.0 -class Flavobacteriia root:Host-associated:Fish:Digestive system 1.0 +class Flavobacteriia root:Host-associated:Fish:Digestive system 2.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Sand 4.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Ice:Glacier 4.0 @@ -5177,15 +5257,16 @@ class Flavobacteriia root:Engineered:Bioreactor:Continuous culture 5.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 class Flavobacteriia root:Engineered:Solid waste 1.0 -class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +class Flavobacteriia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 6.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -class Flavobacteriia root:Environmental:Aquatic:Freshwater:Groundwater 13.0 +class Flavobacteriia root:Environmental:Aquatic:Freshwater:Groundwater 15.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -class Flavobacteriia root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +class Flavobacteriia root:Environmental:Aquatic:Marine:Marginal Sea 6.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Pelagic 14.0 -class Flavobacteriia root:Engineered:Wastewater:Water and sludge 9.0 -class Flavobacteriia root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Flavobacteriia root:Engineered:Wastewater:Water and sludge 11.0 +class Flavobacteriia root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +class Flavobacteriia root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone 2.0 class Flavobacteriia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 class Flavobacteriia root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -5194,14 +5275,12 @@ class Flavobacteriia root:Host-associated:Mammals:Gastrointestinal tract 1.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Benthic 10.0 class Flavobacteriia root:Host-associated:Reptile:Oral cavity 1.0 -class Flavobacteriia root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Ice 5.0 class Flavobacteriia root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Flavobacteriia root:Host-associated:Fish:Digestive system:Intestine 2.0 -class Flavobacteriia root:Host-associated:Insecta 8.0 +class Flavobacteriia root:Host-associated:Insecta 9.0 class Flavobacteriia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -class Flavobacteriia root:Engineered:Built environment 6.0 -class Flavobacteriia root:Engineered:Lab enrichment 6.0 +class Flavobacteriia root:Engineered:Built environment 7.0 class Flavobacteriia root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 class Flavobacteriia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 @@ -5223,7 +5302,6 @@ class Flavobacteriia root:Engineered:Industrial production 1.0 class Flavobacteriia root:Host-associated:Fish:Skin 3.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Flavobacteriia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 6.0 -class Flavobacteriia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Flavobacteriia root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Flavobacteriia root:Host-associated:Arthropoda 3.0 @@ -5233,6 +5311,7 @@ class Flavobacteriia root:Host-associated:Fungi 1.0 class Flavobacteriia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Flavobacteriia root:Host-associated:Human:Respiratory system 4.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Flavobacteriia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Flavobacteriia root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 class Flavobacteriia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 class Flavobacteriia root:Engineered:Biotransformation 2.0 @@ -5240,10 +5319,11 @@ class Flavobacteriia root:Engineered:Biotransformation:Mixed alcohol bioreactor class Flavobacteriia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Flavobacteriia root:Host-associated:Mammals:Skin 3.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 -class Flavobacteriia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +class Flavobacteriia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 class Flavobacteriia root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Flavobacteriia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Flavobacteriia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +class Flavobacteriia root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Flavobacteriia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 class Flavobacteriia root:Host-associated:Birds:Respiratory system 2.0 class Flavobacteriia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -5285,30 +5365,33 @@ class Holophagae root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Holophagae root:Environmental:Terrestrial:Soil 4.0 class Holophagae root:Environmental:Aquatic:Marine:Sediment 1.0 class Holophagae root:Environmental:Aquatic:Sediment 1.0 +class Holophagae root:Engineered:Lab enrichment 1.0 +class Holophagae root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Holophagae root:Host-associated:Plants:Root 1.0 class Holophagae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 class Holophagae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Holophagae root:Engineered:Wastewater:Industrial wastewater 1.0 class Holophagae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -class Holophagae root:Engineered:Lab enrichment 1.0 class Holophagae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 class Holophagae root:Engineered 1.0 class Holophagae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +class Holophagae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Holophagae root:Engineered:Bioremediation 1.0 +class Holophagae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Holophagae root:Host-associated:Microbial 1.0 class Holophagae root:Environmental:Aquatic:Marine:Volcanic 1.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Lake 36.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Pond 5.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater:Sediment 22.0 -order Burkholderiales root:Host-associated:Mammals:Digestive system:Fecal 27.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater:Sediment 24.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Fecal 28.0 order Burkholderiales root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 order Burkholderiales root:Host-associated:Birds:Digestive system:Fecal 6.0 order Burkholderiales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -order Burkholderiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 147.0 -order Burkholderiales root:Environmental:Aquatic:Marine 65.0 +order Burkholderiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 154.0 +order Burkholderiales root:Environmental:Aquatic:Marine 74.0 order Burkholderiales root:Host-associated:Fish 2.0 order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 -order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic 14.0 +order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic 15.0 order Burkholderiales root:Host-associated:Mammals:Digestive system 16.0 order Burkholderiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 12.0 order Burkholderiales root:Environmental:Terrestrial:Geologic 3.0 @@ -5318,48 +5401,52 @@ order Burkholderiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt mar order Burkholderiales root:Host-associated:Human 10.0 order Burkholderiales root:Host-associated:Plants 25.0 order Burkholderiales root:Environmental:Aquatic:Estuary:Sediment 7.0 -order Burkholderiales root:Host-associated:Human:Digestive system:Large intestine 12.0 +order Burkholderiales root:Host-associated:Human:Digestive system:Large intestine 13.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Agricultural 30.0 order Burkholderiales root:Engineered:Bioreactor 51.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 18.0 -order Burkholderiales root:Engineered:Wastewater:Activated Sludge 63.0 +order Burkholderiales root:Engineered:Wastewater:Activated Sludge 64.0 order Burkholderiales root:Host-associated:Human:Skin 11.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Permafrost 6.0 -order Burkholderiales root:Mixed 13.0 +order Burkholderiales root:Mixed 15.0 order Burkholderiales root:Host-associated:Mammals 8.0 order Burkholderiales root:Host-associated:Amphibia 4.0 -order Burkholderiales root:Host-associated:Human:Digestive system:Intestine 2.0 -order Burkholderiales root:Engineered:Food production:Fermented beverages 6.0 +order Burkholderiales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Burkholderiales root:Engineered:Food production:Fermented beverages 7.0 order Burkholderiales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Burkholderiales root:Engineered:Wastewater 27.0 order Burkholderiales root:Host-associated:Human:Reproductive system:Vagina 2.0 order Burkholderiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 49.0 -order Burkholderiales root:Host-associated:Human:Digestive system:Oral 17.0 -order Burkholderiales root:Engineered:Food production:Dairy products 11.0 +order Burkholderiales root:Host-associated:Human:Digestive system:Oral 18.0 +order Burkholderiales root:Engineered:Food production:Dairy products 12.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Contaminated 10.0 order Burkholderiales root:Host-associated:Plants:Phylloplane 12.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Silt 1.0 -order Burkholderiales root:Host-associated:Plants:Rhizosphere 56.0 +order Burkholderiales root:Host-associated:Plants:Rhizosphere 57.0 order Burkholderiales root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -order Burkholderiales root:Environmental:Terrestrial:Soil 158.0 -order Burkholderiales root:Environmental:Aquatic:Marine:Sediment 29.0 -order Burkholderiales root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +order Burkholderiales root:Environmental:Terrestrial:Soil 160.0 +order Burkholderiales root:Environmental:Aquatic:Marine:Sediment 31.0 +order Burkholderiales root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +order Burkholderiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Lotic 6.0 order Burkholderiales root:Environmental:Aquatic:Sediment 16.0 order Burkholderiales root:Environmental:Aquatic 10.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Burkholderiales root:Engineered:Biogas plant:Wet fermentation 5.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Tropical rainforest 8.0 order Burkholderiales root:Host-associated:Porifera 3.0 -order Burkholderiales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +order Burkholderiales root:Engineered:Lab enrichment 7.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Burkholderiales root:Engineered:Lab Synthesis 1.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Grasslands 4.0 order Burkholderiales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 order Burkholderiales root:Host-associated:Birds:Digestive system:Ceca 7.0 +order Burkholderiales root:Host-associated:Plants:Rhizosphere:Soil 24.0 order Burkholderiales root:Host-associated:Human:Digestive system 29.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater 15.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater 16.0 order Burkholderiales root:Environmental:Aquatic:Thermal springs 2.0 order Burkholderiales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 order Burkholderiales root:Environmental:Aquatic:Marine:Coastal 13.0 @@ -5367,7 +5454,7 @@ order Burkholderiales root:Engineered:Solid waste:Composting 14.0 order Burkholderiales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 3.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Drinking water 5.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Desert 8.0 -order Burkholderiales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 29.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 30.0 order Burkholderiales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 5.0 order Burkholderiales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Burkholderiales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 @@ -5379,8 +5466,7 @@ order Burkholderiales root:Engineered:Food production 6.0 order Burkholderiales root:Environmental:Terrestrial:Deep subsurface 1.0 order Burkholderiales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -order Burkholderiales root:Host-associated:Plants:Rhizosphere:Soil 23.0 -order Burkholderiales root:Host-associated:Mammals:Digestive system:Large intestine 7.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Large intestine 8.0 order Burkholderiales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 order Burkholderiales root:Engineered:Food production:Fermented seafood 2.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Lentic 4.0 @@ -5391,10 +5477,9 @@ order Burkholderiales root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 order Burkholderiales root:Engineered:Wastewater:Industrial wastewater 17.0 order Burkholderiales root:Engineered:Modeled 2.0 -order Burkholderiales root:Host-associated:Insecta:Digestive system 5.0 +order Burkholderiales root:Host-associated:Insecta:Digestive system 6.0 order Burkholderiales root:Host-associated 5.0 order Burkholderiales root:Host-associated:Mollusca 1.0 -order Burkholderiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Burkholderiales root:Host-associated:Fish:Digestive system 1.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Mine 4.0 order Burkholderiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 @@ -5409,15 +5494,16 @@ order Burkholderiales root:Engineered:Bioreactor:Continuous culture 8.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 order Burkholderiales root:Engineered:Solid waste 1.0 order Burkholderiales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 5.0 order Burkholderiales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 order Burkholderiales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater 16.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater 18.0 order Burkholderiales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Burkholderiales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Burkholderiales root:Environmental:Aquatic:Marine:Pelagic 4.0 -order Burkholderiales root:Engineered:Wastewater:Water and sludge 16.0 +order Burkholderiales root:Engineered:Wastewater:Water and sludge 18.0 +order Burkholderiales root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 order Burkholderiales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 order Burkholderiales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Burkholderiales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -5427,18 +5513,16 @@ order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater:Mine dra order Burkholderiales root:Host-associated:Mammals:Gastrointestinal tract 2.0 order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Burkholderiales root:Host-associated:Reptile:Oral cavity 1.0 -order Burkholderiales root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Ice 6.0 order Burkholderiales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Crop 1.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 order Burkholderiales root:Host-associated:Fish:Digestive system:Intestine 2.0 -order Burkholderiales root:Host-associated:Insecta 5.0 +order Burkholderiales root:Host-associated:Insecta 6.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 order Burkholderiales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -order Burkholderiales root:Engineered:Built environment 7.0 +order Burkholderiales root:Engineered:Built environment 8.0 order Burkholderiales root:Host-associated:Birds:Digestive system 1.0 -order Burkholderiales root:Engineered:Lab enrichment 7.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Boreal forest 2.0 order Burkholderiales root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 order Burkholderiales root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 @@ -5466,11 +5550,11 @@ order Burkholderiales root:Host-associated:Fish:Skin 2.0 order Burkholderiales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 order Burkholderiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 -order Burkholderiales root:Host-associated:Mammals:Digestive system:Midgut 1.0 +order Burkholderiales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Burkholderiales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Burkholderiales root:Host-associated:Arthropoda 2.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -order Burkholderiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +order Burkholderiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 order Burkholderiales root:Host-associated:Fungi 1.0 order Burkholderiales root:Engineered:Bioremediation 3.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 @@ -5478,11 +5562,12 @@ order Burkholderiales root:Engineered:Bioremediation:Hydrocarbon 2.0 order Burkholderiales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 order Burkholderiales root:Engineered:Biotransformation 2.0 order Burkholderiales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -order Burkholderiales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +order Burkholderiales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 order Burkholderiales root:Host-associated:Mammals:Skin 1.0 order Burkholderiales root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 order Burkholderiales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Burkholderiales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +order Burkholderiales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Burkholderiales root:Environmental:Terrestrial:Soil:Mine drainage 1.0 order Burkholderiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order Burkholderiales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 @@ -5496,6 +5581,7 @@ order Burkholderiales root:Engineered:Wastewater:Nutrient removal:Biological pho order Burkholderiales root:Environmental:Terrestrial:Volcanic 1.0 order Burkholderiales root:Environmental:Aquatic:Lentic 2.0 order Burkholderiales root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 +order Burkholderiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 order Burkholderiales root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order Burkholderiales root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 order Burkholderiales root:Host-associated:Microbial 1.0 @@ -5506,7 +5592,6 @@ order Burkholderiales root:Environmental:Aquatic:Thermal springs:Near-boiling (> order Burkholderiales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 order Burkholderiales root:Environmental:Terrestrial:Agricultural field 1.0 order Burkholderiales root:Host-associated:Mammals:Milk 1.0 -order Burkholderiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Burkholderiales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Burkholderiales root:Host-associated:Spiralia 1.0 order Burkholderiales root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 @@ -5522,12 +5607,12 @@ order Verrucomicrobiales root:Environmental:Aquatic:Freshwater:Lake 10.0 order Verrucomicrobiales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Freshwater:Sediment 2.0 order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Fecal 22.0 -order Verrucomicrobiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 78.0 -order Verrucomicrobiales root:Environmental:Aquatic:Marine 29.0 +order Verrucomicrobiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 80.0 +order Verrucomicrobiales root:Environmental:Aquatic:Marine 31.0 order Verrucomicrobiales root:Host-associated:Fish 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oceanic 8.0 -order Verrucomicrobiales root:Host-associated:Mammals:Digestive system 13.0 +order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oceanic 9.0 +order Verrucomicrobiales root:Host-associated:Mammals:Digestive system 14.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 order Verrucomicrobiales root:Host-associated:Human 1.0 order Verrucomicrobiales root:Host-associated:Plants 2.0 @@ -5545,12 +5630,16 @@ order Verrucomicrobiales root:Engineered:Food production:Dairy products 1.0 order Verrucomicrobiales root:Host-associated:Plants:Rhizosphere 4.0 order Verrucomicrobiales root:Environmental:Terrestrial:Soil 6.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Sediment 17.0 +order Verrucomicrobiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Sediment 1.0 order Verrucomicrobiales root:Environmental:Aquatic 2.0 +order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Midgut 5.0 order Verrucomicrobiales root:Engineered:Biogas plant:Wet fermentation 1.0 order Verrucomicrobiales root:Host-associated:Porifera 2.0 +order Verrucomicrobiales root:Engineered:Lab enrichment 1.0 order Verrucomicrobiales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Verrucomicrobiales root:Host-associated:Birds:Digestive system:Ceca 1.0 +order Verrucomicrobiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Verrucomicrobiales root:Host-associated:Human:Digestive system 8.0 order Verrucomicrobiales root:Environmental:Aquatic:Freshwater 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -5564,7 +5653,6 @@ order Verrucomicrobiales root:Host-associated:Algae:Red algae 3.0 order Verrucomicrobiales root:Engineered:Lab enrichment:Defined media 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Verrucomicrobiales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -order Verrucomicrobiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Large intestine 7.0 order Verrucomicrobiales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Estuary 9.0 @@ -5591,24 +5679,24 @@ order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Verrucomicrobiales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 order Verrucomicrobiales root:Host-associated:Insecta 1.0 order Verrucomicrobiales root:Host-associated:Birds:Digestive system 1.0 -order Verrucomicrobiales root:Engineered:Lab enrichment 1.0 order Verrucomicrobiales root:Host-associated:Animal:Digestive system:Fecal 1.0 order Verrucomicrobiales root:Host-associated:Algae 2.0 order Verrucomicrobiales root:Host-associated:Birds 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Aquaculture 1.0 order Verrucomicrobiales root:Host-associated:Fish:Skin 1.0 -order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Verrucomicrobiales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 order Verrucomicrobiales root:Engineered:Bioremediation 1.0 order Verrucomicrobiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 order Verrucomicrobiales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +order Verrucomicrobiales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Verrucomicrobiales root:Host-associated:Human:Circulatory system:Blood 1.0 order Verrucomicrobiales root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 order Verrucomicrobiales root:Host-associated:Mammals:Excretory system 1.0 +order Verrucomicrobiales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Lake 4.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Sediment 13.0 +order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Sediment 15.0 order Nitrosomonadales root:Environmental:Aquatic:Marine 65.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Oceanic 18.0 order Nitrosomonadales root:Host-associated:Mammals:Digestive system 1.0 @@ -5619,13 +5707,13 @@ order Nitrosomonadales root:Host-associated:Plants 2.0 order Nitrosomonadales root:Environmental:Aquatic:Estuary:Sediment 3.0 order Nitrosomonadales root:Environmental:Terrestrial:Soil:Agricultural 5.0 order Nitrosomonadales root:Engineered:Bioreactor 9.0 -order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 22.0 -order Nitrosomonadales root:Engineered:Wastewater:Activated Sludge 14.0 +order Nitrosomonadales root:Engineered:Wastewater:Activated Sludge 15.0 order Nitrosomonadales root:Environmental:Terrestrial:Soil:Permafrost 1.0 order Nitrosomonadales root:Mixed 5.0 order Nitrosomonadales root:Engineered:Wastewater 4.0 -order Nitrosomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 11.0 +order Nitrosomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 12.0 order Nitrosomonadales root:Environmental:Terrestrial:Soil:Contaminated 2.0 order Nitrosomonadales root:Host-associated:Plants:Phylloplane 1.0 order Nitrosomonadales root:Host-associated:Plants:Rhizosphere 1.0 @@ -5651,11 +5739,13 @@ order Nitrosomonadales root:Engineered:Bioreactor:Continuous culture 2.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 order Nitrosomonadales root:Engineered:Solid waste 1.0 +order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 -order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 -order Nitrosomonadales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater 4.0 +order Nitrosomonadales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Pelagic 7.0 order Nitrosomonadales root:Engineered:Wastewater:Water and sludge 4.0 +order Nitrosomonadales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -5669,8 +5759,9 @@ order Nitrosomonadales root:Engineered:Industrial production 1.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 order Nitrosomonadales root:Host-associated:Arthropoda 1.0 order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +order Nitrosomonadales root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 order Nitrosomonadales root:Engineered:Bioremediation:Hydrocarbon 1.0 +order Nitrosomonadales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Nitrosomonadales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 order Nitrosomonadales root:Environmental:Terrestrial:Soil:Loam 1.0 order Nitrosomonadales root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -5686,56 +5777,58 @@ order Holophagales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Holophagales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 order Holophagales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Holophagales root:Environmental:Terrestrial:Soil 2.0 -order Holophagales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Holophagales root:Engineered:Lab enrichment 1.0 +order Holophagales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Holophagales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Holophagales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 order Holophagales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +order Holophagales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Holophagales root:Engineered:Bioremediation 1.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lake 23.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Pond 5.0 -order Flavobacteriales root:Environmental:Aquatic:Freshwater:Sediment 6.0 +order Flavobacteriales root:Environmental:Aquatic:Freshwater:Sediment 7.0 order Flavobacteriales root:Host-associated:Mammals:Digestive system:Fecal 4.0 -order Flavobacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 9.0 +order Flavobacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 10.0 order Flavobacteriales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 order Flavobacteriales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 order Flavobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 -order Flavobacteriales root:Environmental:Aquatic:Marine 291.0 +order Flavobacteriales root:Environmental:Aquatic:Marine 312.0 order Flavobacteriales root:Host-associated:Fish 5.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic 73.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic 76.0 order Flavobacteriales root:Host-associated:Mammals:Digestive system 3.0 order Flavobacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Forest soil 2.0 order Flavobacteriales root:Environmental:Aquatic:Lentic:Brackish 7.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 12.0 order Flavobacteriales root:Host-associated:Human 6.0 order Flavobacteriales root:Host-associated:Plants 10.0 order Flavobacteriales root:Environmental:Aquatic:Estuary:Sediment 12.0 order Flavobacteriales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Agricultural 2.0 order Flavobacteriales root:Engineered:Bioreactor 21.0 -order Flavobacteriales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 +order Flavobacteriales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 -order Flavobacteriales root:Engineered:Wastewater:Activated Sludge 22.0 +order Flavobacteriales root:Engineered:Wastewater:Activated Sludge 23.0 order Flavobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 order Flavobacteriales root:Host-associated:Human:Skin 4.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Permafrost 1.0 -order Flavobacteriales root:Mixed 15.0 +order Flavobacteriales root:Mixed 16.0 order Flavobacteriales root:Host-associated:Mammals 1.0 order Flavobacteriales root:Host-associated:Amphibia 4.0 order Flavobacteriales root:Host-associated:Human:Digestive system:Intestine 1.0 -order Flavobacteriales root:Engineered:Food production:Fermented beverages 1.0 +order Flavobacteriales root:Engineered:Food production:Fermented beverages 2.0 order Flavobacteriales root:Engineered:Wastewater 14.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 59.0 -order Flavobacteriales root:Host-associated:Human:Digestive system:Oral 32.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 61.0 +order Flavobacteriales root:Host-associated:Human:Digestive system:Oral 33.0 order Flavobacteriales root:Engineered:Food production:Dairy products 15.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Contaminated 2.0 order Flavobacteriales root:Host-associated:Plants:Phylloplane 8.0 order Flavobacteriales root:Host-associated:Plants:Rhizosphere 16.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Coastal:Sediment 23.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Coastal:Sediment 24.0 order Flavobacteriales root:Environmental:Terrestrial:Soil 29.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Sediment 88.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Sediment 89.0 order Flavobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lotic 6.0 order Flavobacteriales root:Environmental:Aquatic:Sediment 11.0 @@ -5743,9 +5836,11 @@ order Flavobacteriales root:Environmental:Aquatic 7.0 order Flavobacteriales root:Engineered:Biogas plant:Wet fermentation 2.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Flavobacteriales root:Host-associated:Porifera 9.0 +order Flavobacteriales root:Engineered:Lab enrichment 6.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Flavobacteriales root:Engineered:Lab Synthesis 1.0 order Flavobacteriales root:Host-associated:Mammals:Digestive system:Stomach 1.0 +order Flavobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Flavobacteriales root:Host-associated:Human:Digestive system 3.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater 9.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 @@ -5759,6 +5854,7 @@ order Flavobacteriales root:Environmental:Terrestrial:Soil:Desert 2.0 order Flavobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 order Flavobacteriales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 8.0 order Flavobacteriales root:Host-associated:Algae:Red algae 9.0 +order Flavobacteriales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Hydrothermal vents 8.0 order Flavobacteriales root:Engineered:Lab enrichment:Defined media 1.0 order Flavobacteriales root:Host-associated:Plants:Root 3.0 @@ -5768,8 +5864,7 @@ order Flavobacteriales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Flavobacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 order Flavobacteriales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -order Flavobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 -order Flavobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +order Flavobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 order Flavobacteriales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lentic 4.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 @@ -5793,15 +5888,16 @@ order Flavobacteriales root:Engineered:Bioreactor:Continuous culture 5.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 6.0 order Flavobacteriales root:Engineered:Solid waste 1.0 -order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +order Flavobacteriales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 5.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -order Flavobacteriales root:Environmental:Aquatic:Freshwater:Groundwater 9.0 +order Flavobacteriales root:Environmental:Aquatic:Freshwater:Groundwater 11.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -order Flavobacteriales root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +order Flavobacteriales root:Environmental:Aquatic:Marine:Marginal Sea 6.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Pelagic 14.0 -order Flavobacteriales root:Engineered:Wastewater:Water and sludge 10.0 -order Flavobacteriales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Flavobacteriales root:Engineered:Wastewater:Water and sludge 12.0 +order Flavobacteriales root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +order Flavobacteriales root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 order Flavobacteriales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Flavobacteriales root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -5810,15 +5906,13 @@ order Flavobacteriales root:Host-associated:Mammals:Gastrointestinal tract 1.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Benthic 10.0 order Flavobacteriales root:Host-associated:Reptile:Oral cavity 1.0 -order Flavobacteriales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Ice 4.0 order Flavobacteriales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 order Flavobacteriales root:Host-associated:Fish:Digestive system:Intestine 2.0 -order Flavobacteriales root:Host-associated:Insecta 5.0 +order Flavobacteriales root:Host-associated:Insecta 6.0 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Flavobacteriales root:Engineered:Built environment 1.0 -order Flavobacteriales root:Engineered:Lab enrichment 6.0 +order Flavobacteriales root:Engineered:Built environment 2.0 order Flavobacteriales root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 order Flavobacteriales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 @@ -5845,6 +5939,7 @@ order Flavobacteriales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3 order Flavobacteriales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Flavobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 order Flavobacteriales root:Host-associated:Human:Respiratory system 1.0 +order Flavobacteriales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Flavobacteriales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order Flavobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 order Flavobacteriales root:Engineered:Biotransformation 1.0 @@ -5852,9 +5947,10 @@ order Flavobacteriales root:Engineered:Biotransformation:Mixed alcohol bioreacto order Flavobacteriales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Flavobacteriales root:Host-associated:Mammals:Skin 3.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 -order Flavobacteriales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Flavobacteriales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 order Flavobacteriales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Flavobacteriales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +order Flavobacteriales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Flavobacteriales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order Flavobacteriales root:Host-associated:Birds:Respiratory system 2.0 order Flavobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -5890,17 +5986,18 @@ order Opitutales root:Environmental:Terrestrial:Soil 2.0 order Opitutales root:Environmental:Aquatic:Marine:Sediment 1.0 order Opitutales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Opitutales root:Environmental:Aquatic:Sediment 1.0 +order Opitutales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Opitutales root:Engineered:Solid waste:Composting 3.0 order Opitutales root:Environmental:Aquatic:Freshwater:Drinking water 1.0 order Opitutales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -order Opitutales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Opitutales root:Environmental:Aquatic:Estuary 5.0 order Opitutales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +order Opitutales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Puniceicoccales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Puniceicoccales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Puniceicoccales root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Puniceicoccales root:Environmental:Aquatic:Marine 39.0 -order Puniceicoccales root:Environmental:Aquatic:Marine:Oceanic 12.0 +order Puniceicoccales root:Environmental:Aquatic:Marine:Oceanic 13.0 order Puniceicoccales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Puniceicoccales root:Environmental:Aquatic:Lentic:Brackish 1.0 order Puniceicoccales root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -5918,9 +6015,10 @@ order Puniceicoccales root:Environmental:Aquatic:Non-marine Saline and Alkaline: order Puniceicoccales root:Host-associated:Algae:Brown Algae 1.0 order Pelagibacterales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Pelagibacterales root:Environmental:Aquatic:Freshwater:Pond 3.0 -order Pelagibacterales root:Environmental:Aquatic:Marine 217.0 +order Pelagibacterales root:Environmental:Aquatic:Freshwater:Sediment 1.0 +order Pelagibacterales root:Environmental:Aquatic:Marine 225.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Pelagibacterales root:Environmental:Aquatic:Marine:Oceanic 58.0 +order Pelagibacterales root:Environmental:Aquatic:Marine:Oceanic 60.0 order Pelagibacterales root:Environmental:Aquatic:Lentic:Brackish 2.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Pelagibacterales root:Host-associated:Plants 1.0 @@ -5928,7 +6026,7 @@ order Pelagibacterales root:Environmental:Aquatic:Estuary:Sediment 2.0 order Pelagibacterales root:Engineered:Bioreactor 1.0 order Pelagibacterales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Pelagibacterales root:Mixed 4.0 -order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 20.0 +order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 22.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Pelagibacterales root:Environmental:Terrestrial:Soil 2.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Sediment 12.0 @@ -5951,10 +6049,11 @@ order Pelagibacterales root:Environmental:Aquatic:Marine:Brackish 1.0 order Pelagibacterales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -order Pelagibacterales root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +order Pelagibacterales root:Environmental:Aquatic:Marine:Marginal Sea 6.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Pelagic 10.0 -order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 +order Pelagibacterales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Pelagibacterales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 order Pelagibacterales root:Host-associated:Insecta 1.0 order Pelagibacterales root:Engineered:Built environment 1.0 order Pelagibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -5969,27 +6068,27 @@ order Pelagibacterales root 1.0 order Pelagibacterales root:Host-associated:Algae:Brown Algae 2.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Lake 6.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Methylococcales root:Environmental:Aquatic:Marine 33.0 -order Methylococcales root:Environmental:Aquatic:Marine:Oceanic 11.0 +order Methylococcales root:Environmental:Aquatic:Marine 34.0 +order Methylococcales root:Environmental:Aquatic:Marine:Oceanic 12.0 order Methylococcales root:Host-associated:Plants 1.0 order Methylococcales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Methylococcales root:Engineered:Bioreactor 2.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Methylococcales root:Environmental:Terrestrial:Soil:Permafrost 1.0 -order Methylococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +order Methylococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 order Methylococcales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Methylococcales root:Environmental:Terrestrial:Soil 3.0 order Methylococcales root:Environmental:Aquatic:Marine:Sediment 13.0 order Methylococcales root:Environmental:Aquatic:Sediment 6.0 order Methylococcales root:Environmental:Aquatic 1.0 order Methylococcales root:Host-associated:Porifera 1.0 +order Methylococcales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Methylococcales root:Environmental:Aquatic:Freshwater 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Coastal 3.0 order Methylococcales root:Environmental:Aquatic:Marine:Cold seeps 4.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -order Methylococcales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Methylococcales root:Environmental:Aquatic:Estuary 1.0 order Methylococcales root:Engineered:Wastewater:Industrial wastewater 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -5999,6 +6098,7 @@ order Methylococcales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Groundwater 5.0 +order Methylococcales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Methylococcales root:Environmental:Aquatic:Marine:Pelagic 2.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Methylococcales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 @@ -6010,9 +6110,9 @@ family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lake 28.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Pond 2.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Sediment 8.0 family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -family Comamonadaceae root:Environmental:Aquatic:Marine 21.0 +family Comamonadaceae root:Environmental:Aquatic:Marine 22.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -family Comamonadaceae root:Environmental:Aquatic:Marine:Oceanic 4.0 +family Comamonadaceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Comamonadaceae root:Host-associated:Mammals:Digestive system 1.0 family Comamonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 family Comamonadaceae root:Environmental:Terrestrial:Geologic 3.0 @@ -6028,13 +6128,14 @@ family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 family Comamonadaceae root:Engineered:Wastewater:Activated Sludge 42.0 family Comamonadaceae root:Host-associated:Human:Skin 4.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Permafrost 4.0 -family Comamonadaceae root:Mixed 3.0 +family Comamonadaceae root:Mixed 4.0 family Comamonadaceae root:Host-associated:Mammals 2.0 family Comamonadaceae root:Host-associated:Amphibia 5.0 +family Comamonadaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Comamonadaceae root:Engineered:Food production:Fermented beverages 3.0 family Comamonadaceae root:Engineered:Wastewater 14.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 18.0 -family Comamonadaceae root:Host-associated:Human:Digestive system:Oral 2.0 +family Comamonadaceae root:Host-associated:Human:Digestive system:Oral 3.0 family Comamonadaceae root:Engineered:Food production:Dairy products 5.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Contaminated 5.0 family Comamonadaceae root:Host-associated:Plants:Phylloplane 8.0 @@ -6042,17 +6143,19 @@ family Comamonadaceae root:Host-associated:Plants:Rhizosphere 22.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Wetlands 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil 87.0 -family Comamonadaceae root:Environmental:Aquatic:Marine:Sediment 11.0 +family Comamonadaceae root:Environmental:Aquatic:Marine:Sediment 12.0 family Comamonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lotic 6.0 family Comamonadaceae root:Environmental:Aquatic:Sediment 6.0 family Comamonadaceae root:Environmental:Aquatic 5.0 family Comamonadaceae root:Engineered:Biogas plant:Wet fermentation 3.0 family Comamonadaceae root:Host-associated:Porifera 2.0 +family Comamonadaceae root:Engineered:Lab enrichment 2.0 family Comamonadaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Wetlands 4.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 -family Comamonadaceae root:Environmental:Aquatic:Freshwater 11.0 +family Comamonadaceae root:Host-associated:Plants:Rhizosphere:Soil 13.0 +family Comamonadaceae root:Environmental:Aquatic:Freshwater 12.0 family Comamonadaceae root:Environmental:Aquatic:Thermal springs 1.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -6066,7 +6169,6 @@ family Comamonadaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Comamonadaceae root:Engineered:Lab enrichment:Defined media 1.0 family Comamonadaceae root:Host-associated:Plants:Root 5.0 family Comamonadaceae root:Engineered:Food production 3.0 -family Comamonadaceae root:Host-associated:Plants:Rhizosphere:Soil 13.0 family Comamonadaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lentic 4.0 family Comamonadaceae root:Environmental:Aquatic:Estuary 11.0 @@ -6075,7 +6177,7 @@ family Comamonadaceae root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 6.0 family Comamonadaceae root:Engineered:Wastewater:Industrial wastewater 15.0 family Comamonadaceae root:Engineered:Modeled 1.0 -family Comamonadaceae root:Host-associated:Insecta:Digestive system 3.0 +family Comamonadaceae root:Host-associated:Insecta:Digestive system 4.0 family Comamonadaceae root:Host-associated 3.0 family Comamonadaceae root:Host-associated:Mollusca 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -6085,11 +6187,11 @@ family Comamonadaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land family Comamonadaceae root:Engineered:Bioreactor:Continuous culture 5.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Comamonadaceae root:Engineered:Solid waste 1.0 -family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 +family Comamonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 4.0 family Comamonadaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -family Comamonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 11.0 -family Comamonadaceae root:Engineered:Wastewater:Water and sludge 15.0 +family Comamonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 13.0 +family Comamonadaceae root:Engineered:Wastewater:Water and sludge 17.0 family Comamonadaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Comamonadaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Comamonadaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 @@ -6099,11 +6201,10 @@ family Comamonadaceae root:Environmental:Aquatic:Freshwater:Ice 6.0 family Comamonadaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Crop 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 -family Comamonadaceae root:Host-associated:Insecta 3.0 +family Comamonadaceae root:Host-associated:Insecta 4.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Comamonadaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Comamonadaceae root:Engineered:Built environment 1.0 -family Comamonadaceae root:Engineered:Lab enrichment 2.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family Comamonadaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Comamonadaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -6120,23 +6221,24 @@ family Comamonadaceae root:Host-associated:Fish:Skin 1.0 family Comamonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 family Comamonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 family Comamonadaceae root:Host-associated:Arthropoda 1.0 -family Comamonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Comamonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Comamonadaceae root:Host-associated:Fungi 1.0 family Comamonadaceae root:Engineered:Bioremediation 2.0 family Comamonadaceae root:Engineered:Bioremediation:Hydrocarbon 1.0 family Comamonadaceae root:Engineered:Biotransformation 1.0 family Comamonadaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 +family Comamonadaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Comamonadaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 family Comamonadaceae root:Host-associated:Mollusca:Digestive system 2.0 family Comamonadaceae root:Host-associated:Human:Circulatory system 1.0 family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 family Comamonadaceae root:Environmental:Aquatic:Lentic 1.0 +family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 family Comamonadaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 family Comamonadaceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Comamonadaceae root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 -family Comamonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Comamonadaceae root:Host-associated:Spiralia 1.0 family Comamonadaceae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 family Holophagaceae root:Environmental:Aquatic:Freshwater:Lake 4.0 @@ -6149,21 +6251,23 @@ family Holophagaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4 family Holophagaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Holophagaceae root:Environmental:Terrestrial:Soil 3.0 family Holophagaceae root:Environmental:Aquatic:Sediment 1.0 +family Holophagaceae root:Engineered:Lab enrichment 1.0 family Holophagaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 family Holophagaceae root:Engineered:Wastewater:Industrial wastewater 1.0 -family Holophagaceae root:Engineered:Lab enrichment 1.0 family Holophagaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Holophagaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +family Holophagaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Holophagaceae root:Engineered:Bioremediation 1.0 +family Holophagaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Lake 10.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Pond 2.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 family Burkholderiaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Burkholderiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -family Burkholderiaceae root:Environmental:Aquatic:Marine 35.0 +family Burkholderiaceae root:Environmental:Aquatic:Marine 36.0 family Burkholderiaceae root:Host-associated:Fish 1.0 family Burkholderiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 -family Burkholderiaceae root:Environmental:Aquatic:Marine:Oceanic 8.0 +family Burkholderiaceae root:Environmental:Aquatic:Marine:Oceanic 9.0 family Burkholderiaceae root:Host-associated:Mammals:Digestive system 1.0 family Burkholderiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil:Forest soil 6.0 @@ -6172,7 +6276,7 @@ family Burkholderiaceae root:Host-associated:Plants 3.0 family Burkholderiaceae root:Environmental:Aquatic:Estuary:Sediment 4.0 family Burkholderiaceae root:Engineered:Bioreactor 16.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 -family Burkholderiaceae root:Engineered:Wastewater:Activated Sludge 5.0 +family Burkholderiaceae root:Engineered:Wastewater:Activated Sludge 6.0 family Burkholderiaceae root:Host-associated:Human:Skin 1.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 family Burkholderiaceae root:Mixed 3.0 @@ -6180,19 +6284,20 @@ family Burkholderiaceae root:Host-associated:Mammals 6.0 family Burkholderiaceae root:Engineered:Food production:Fermented beverages 1.0 family Burkholderiaceae root:Engineered:Wastewater 3.0 family Burkholderiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 22.0 -family Burkholderiaceae root:Host-associated:Human:Digestive system:Oral 5.0 +family Burkholderiaceae root:Host-associated:Human:Digestive system:Oral 6.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Burkholderiaceae root:Host-associated:Plants:Phylloplane 2.0 family Burkholderiaceae root:Host-associated:Plants:Rhizosphere 10.0 family Burkholderiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil 18.0 -family Burkholderiaceae root:Environmental:Aquatic:Marine:Sediment 9.0 -family Burkholderiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Burkholderiaceae root:Environmental:Aquatic:Marine:Sediment 10.0 +family Burkholderiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Lotic 3.0 family Burkholderiaceae root:Environmental:Aquatic:Sediment 2.0 family Burkholderiaceae root:Environmental:Aquatic 1.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 5.0 family Burkholderiaceae root:Host-associated:Porifera 1.0 +family Burkholderiaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Burkholderiaceae root:Host-associated:Human:Digestive system 2.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater 2.0 family Burkholderiaceae root:Environmental:Aquatic:Thermal springs 1.0 @@ -6209,7 +6314,7 @@ family Burkholderiaceae root:Host-associated:Plants:Root 4.0 family Burkholderiaceae root:Engineered:Food production 1.0 family Burkholderiaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Burkholderiaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 +family Burkholderiaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Burkholderiaceae root:Environmental:Aquatic:Estuary 9.0 family Burkholderiaceae root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 family Burkholderiaceae root:Engineered:Wastewater:Industrial wastewater 3.0 @@ -6242,6 +6347,7 @@ family Burkholderiaceae root:Host-associated:Birds 1.0 family Burkholderiaceae root:Engineered 1.0 family Burkholderiaceae root:Host-associated:Plants:Rhizome 1.0 family Burkholderiaceae root:Engineered:Industrial production 1.0 +family Burkholderiaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Burkholderiaceae root:Host-associated:Fungi 1.0 family Burkholderiaceae root:Engineered:Bioremediation 1.0 family Burkholderiaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 @@ -6266,25 +6372,26 @@ family Opitutaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Opitutaceae root:Environmental:Aquatic:Sediment 1.0 family Opitutaceae root:Environmental:Aquatic 1.0 family Opitutaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Opitutaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Opitutaceae root:Environmental:Aquatic:Freshwater 1.0 family Opitutaceae root:Engineered:Solid waste:Composting 5.0 family Opitutaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -family Opitutaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Opitutaceae root:Environmental:Aquatic:Estuary 7.0 family Opitutaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Opitutaceae root:Engineered:Wastewater:Industrial wastewater 1.0 -family Opitutaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Opitutaceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 family Opitutaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Opitutaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +family Opitutaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Verrucomicrobia subdivision 6 root:Environmental:Aquatic:Freshwater:Lake 2.0 family Verrucomicrobia subdivision 6 root:Environmental:Aquatic:Marine 1.0 family Puniceicoccaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Puniceicoccaceae root:Environmental:Aquatic:Freshwater:Pond 2.0 -family Puniceicoccaceae root:Environmental:Aquatic:Marine 49.0 -family Puniceicoccaceae root:Environmental:Aquatic:Marine:Oceanic 18.0 +family Puniceicoccaceae root:Environmental:Aquatic:Marine 50.0 +family Puniceicoccaceae root:Environmental:Aquatic:Marine:Oceanic 19.0 family Puniceicoccaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Puniceicoccaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 -family Puniceicoccaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 18.0 +family Puniceicoccaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 19.0 family Puniceicoccaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Puniceicoccaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Puniceicoccaceae root:Host-associated:Porifera 2.0 @@ -6308,7 +6415,7 @@ family Nitrosomonadaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 family Nitrosomonadaceae root:Environmental:Terrestrial:Soil:Agricultural 7.0 family Nitrosomonadaceae root:Engineered:Bioreactor 3.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 11.0 -family Nitrosomonadaceae root:Engineered:Wastewater:Activated Sludge 5.0 +family Nitrosomonadaceae root:Engineered:Wastewater:Activated Sludge 6.0 family Nitrosomonadaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 family Nitrosomonadaceae root:Mixed 5.0 family Nitrosomonadaceae root:Engineered:Wastewater 1.0 @@ -6317,7 +6424,7 @@ family Nitrosomonadaceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 family Nitrosomonadaceae root:Host-associated:Plants:Rhizosphere 3.0 family Nitrosomonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -family Nitrosomonadaceae root:Environmental:Terrestrial:Soil 28.0 +family Nitrosomonadaceae root:Environmental:Terrestrial:Soil 29.0 family Nitrosomonadaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Nitrosomonadaceae root:Environmental:Aquatic:Sediment 6.0 family Nitrosomonadaceae root:Environmental:Aquatic 1.0 @@ -6343,6 +6450,7 @@ family Nitrosomonadaceae root:Engineered:Modeled:Simulated communities (DNA mixt family Nitrosomonadaceae root:Environmental 1.0 family Nitrosomonadaceae root:Engineered 1.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +family Nitrosomonadaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 family Nitrosomonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -6358,6 +6466,7 @@ family Chitinophagaceae root:Host-associated:Human:Digestive system:Large intest family Chitinophagaceae root:Environmental:Aquatic:Marine 5.0 family Chitinophagaceae root:Host-associated:Fish 1.0 family Chitinophagaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +family Chitinophagaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Chitinophagaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Forest soil 18.0 family Chitinophagaceae root:Host-associated:Human 1.0 @@ -6370,7 +6479,7 @@ family Chitinophagaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 11. family Chitinophagaceae root:Engineered:Wastewater:Activated Sludge 27.0 family Chitinophagaceae root:Host-associated:Human:Skin 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Permafrost 8.0 -family Chitinophagaceae root:Mixed 11.0 +family Chitinophagaceae root:Mixed 12.0 family Chitinophagaceae root:Host-associated:Mammals 5.0 family Chitinophagaceae root:Host-associated:Amphibia 2.0 family Chitinophagaceae root:Engineered:Wastewater 9.0 @@ -6379,14 +6488,16 @@ family Chitinophagaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 family Chitinophagaceae root:Host-associated:Plants:Rhizosphere 41.0 family Chitinophagaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -family Chitinophagaceae root:Environmental:Terrestrial:Soil 114.0 +family Chitinophagaceae root:Environmental:Terrestrial:Soil 116.0 family Chitinophagaceae root:Environmental:Aquatic:Marine:Sediment 7.0 family Chitinophagaceae root:Environmental:Aquatic:Freshwater:Lotic 3.0 family Chitinophagaceae root:Environmental:Aquatic:Sediment 3.0 family Chitinophagaceae root:Environmental:Aquatic 2.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 +family Chitinophagaceae root:Engineered:Lab enrichment 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Grasslands 7.0 +family Chitinophagaceae root:Host-associated:Plants:Rhizosphere:Soil 14.0 family Chitinophagaceae root:Host-associated:Human:Digestive system 2.0 family Chitinophagaceae root:Environmental:Aquatic:Freshwater 4.0 family Chitinophagaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -6400,7 +6511,6 @@ family Chitinophagaceae root:Engineered:Lab enrichment:Defined media 1.0 family Chitinophagaceae root:Host-associated:Plants:Root 5.0 family Chitinophagaceae root:Environmental:Terrestrial:Deep subsurface 4.0 family Chitinophagaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Chitinophagaceae root:Host-associated:Plants:Rhizosphere:Soil 14.0 family Chitinophagaceae root:Environmental:Aquatic:Freshwater:Lentic 4.0 family Chitinophagaceae root:Environmental:Aquatic:Estuary 14.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -6425,7 +6535,6 @@ family Chitinophagaceae root:Environmental:Terrestrial:Soil:Crop 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 family Chitinophagaceae root:Host-associated:Insecta 3.0 family Chitinophagaceae root:Engineered:Built environment 1.0 -family Chitinophagaceae root:Engineered:Lab enrichment 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family Chitinophagaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Chitinophagaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 4.0 @@ -6444,6 +6553,7 @@ family Chitinophagaceae root:Host-associated:Cnidaria 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Loam 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 3.0 family Chitinophagaceae root:Environmental:Aquatic:Lentic 1.0 +family Chitinophagaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Chitinophagaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 family Chitinophagaceae root:Engineered:Solid waste:Composting:Grass 1.0 family Chitinophagaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 @@ -6502,21 +6612,23 @@ family Legionellaceae root:Environmental:Aquatic:Freshwater 1.0 family Legionellaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Legionellaceae root:Engineered:Solid waste:Composting 1.0 family Legionellaceae root:Engineered:Wastewater:Industrial wastewater 1.0 +family Legionellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Legionellaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Legionellaceae root:Engineered:Industrial production 1.0 family Legionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Nitrosospira root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Nitrosospira root:Environmental:Aquatic:Marine 1.0 -genus Nitrosospira root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Nitrosospira root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Nitrosospira root:Environmental:Terrestrial:Soil 1.0 genus Nitrosospira root:Environmental:Aquatic:Marine:Coastal 1.0 +genus Nitrosospira root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Nitrosospira root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Lake 3.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 genus Ilumatobacter root:Environmental:Aquatic:Marine 25.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Ilumatobacter root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Ilumatobacter root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 genus Ilumatobacter root:Environmental:Aquatic:Estuary:Sediment 5.0 genus Ilumatobacter root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -6528,11 +6640,12 @@ genus Ilumatobacter root:Mixed 2.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 32.0 genus Ilumatobacter root:Host-associated:Plants:Rhizosphere 1.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -genus Ilumatobacter root:Environmental:Terrestrial:Soil 1.0 +genus Ilumatobacter root:Environmental:Terrestrial:Soil 2.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Sediment 12.0 genus Ilumatobacter root:Environmental:Aquatic:Sediment 1.0 genus Ilumatobacter root:Environmental:Aquatic 1.0 genus Ilumatobacter root:Host-associated:Porifera 1.0 +genus Ilumatobacter root:Engineered:Lab enrichment 1.0 genus Ilumatobacter root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater 1.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -6540,6 +6653,7 @@ genus Ilumatobacter root:Environmental:Aquatic:Marine:Coastal 4.0 genus Ilumatobacter root:Engineered:Solid waste:Composting 1.0 genus Ilumatobacter root:Environmental:Terrestrial:Soil:Desert 1.0 genus Ilumatobacter root:Host-associated:Algae:Red algae 6.0 +genus Ilumatobacter root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Ilumatobacter root:Environmental:Aquatic:Estuary 19.0 @@ -6550,7 +6664,6 @@ genus Ilumatobacter root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Ilumatobacter root:Environmental:Aquatic:Marine:Pelagic 4.0 genus Ilumatobacter root:Host-associated:Invertebrates:Echinodermata 1.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 -genus Ilumatobacter root:Engineered:Lab enrichment 1.0 genus Ilumatobacter root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 genus Ilumatobacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 genus Ilumatobacter root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -6560,7 +6673,7 @@ genus Polynucleobacter root:Environmental:Aquatic:Freshwater:Pond 2.0 genus Polynucleobacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Polynucleobacter root:Environmental:Aquatic:Marine 2.0 genus Polynucleobacter root:Host-associated:Fish 1.0 -genus Polynucleobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Polynucleobacter root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Polynucleobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Polynucleobacter root:Mixed 1.0 genus Polynucleobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 @@ -6596,7 +6709,8 @@ genus Legionella root:Environmental:Aquatic:Freshwater 1.0 genus Legionella root:Environmental:Aquatic:Marine:Coastal 2.0 genus Legionella root:Engineered:Solid waste:Composting 1.0 genus Legionella root:Engineered:Wastewater:Industrial wastewater 1.0 -genus Legionella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Legionella root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +genus Legionella root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Legionella root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 genus Legionella root:Engineered:Industrial production 1.0 genus Legionella root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 @@ -6617,12 +6731,15 @@ genus Opitutus root:Engineered:Solid waste:Composting 2.0 genus Opitutus root:Environmental:Aquatic:Estuary 8.0 genus Opitutus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Opitutus root:Engineered:Bioremediation 1.0 +genus Opitutus root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Lacunisphaera root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Lacunisphaera root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Lacunisphaera root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Lacunisphaera root:Environmental:Terrestrial:Soil 1.0 genus Lacunisphaera root:Environmental:Aquatic:Sediment 1.0 genus Lacunisphaera root:Environmental:Aquatic:Estuary 1.0 +genus Lacunisphaera root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Lacunisphaera root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Crenothrix root:Environmental:Aquatic:Freshwater:Lake 4.0 genus Crenothrix root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Crenothrix root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -6643,15 +6760,15 @@ genus Limnohabitans root:Mixed 1.0 genus Limnohabitans root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Limnohabitans root:Environmental:Terrestrial:Soil 5.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Limnohabitans root:Engineered:Lab enrichment 1.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater 2.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Limnohabitans root:Engineered:Wastewater:Industrial wastewater 1.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -genus Limnohabitans root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +genus Limnohabitans root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Limnohabitans root:Engineered:Wastewater:Water and sludge 2.0 -genus Limnohabitans root:Engineered:Lab enrichment 1.0 genus Limnohabitans root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Limnohabitans root:Host-associated:Animal 1.0 genus Limnohabitans root:Environmental:Aquatic:Aquaculture 1.0 @@ -6697,6 +6814,7 @@ genus Fluviicola root:Host-associated:Arthropoda 1.0 genus Fluviicola root:Engineered:Solid waste:Composting:Grass 1.0 genus Fluviicola root:Host-associated:Mollusca:Digestive system:Glands 1.0 species Bacteroidetes bacterium SCGC AAA027-G08 root:Environmental:Aquatic:Freshwater:Lake 3.0 +species Bacteroidetes bacterium SCGC AAA027-G08 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Bacteroidetes bacterium SCGC AAA027-G08 root:Environmental:Aquatic:Estuary:Sediment 3.0 species Bacteroidetes bacterium SCGC AAA027-G08 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 42.0 species Bacteroidetes bacterium SCGC AAA027-G08 root:Environmental:Aquatic:Freshwater 1.0 @@ -6724,6 +6842,7 @@ species actinobacterium SCGC AAA027-L06 root:Environmental:Aquatic:Freshwater:Le species actinobacterium SCGC AAA027-L06 root:Environmental:Aquatic:Estuary 13.0 species actinobacterium SCGC AAA027-L06 root:Engineered:Wastewater:Water and sludge 1.0 species Actinobacteria bacterium IMCC26077 root:Environmental:Aquatic:Freshwater:Lake 3.0 +species Actinobacteria bacterium IMCC26077 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Actinobacteria bacterium IMCC26077 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 species Acidimicrobiia bacterium BACL6 MAG-120322-bin79 root:Environmental:Aquatic:Freshwater:Lake 1.0 species Acidimicrobiia bacterium BACL6 MAG-120322-bin79 root:Environmental:Aquatic:Marine 5.0 @@ -6741,6 +6860,7 @@ species actinobacterium SCGC AAA028-I14 root:Environmental:Aquatic:Freshwater:Gr species Candidatus Methylopumilus planktonicus root:Environmental:Aquatic:Freshwater:Lake 1.0 species Candidatus Methylopumilus planktonicus root:Engineered:Wastewater:Water and sludge 1.0 species beta proteobacterium SCGC AAA028-K02 root:Environmental:Aquatic:Freshwater:Lake 1.0 +species beta proteobacterium SCGC AAA028-K02 root:Environmental:Aquatic:Marine:Oceanic 1.0 species beta proteobacterium SCGC AAA028-K02 root:Environmental:Aquatic:Estuary:Sediment 1.0 species beta proteobacterium SCGC AAA028-K02 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 23.0 species beta proteobacterium SCGC AAA028-K02 root:Environmental:Aquatic:Freshwater 1.0 @@ -6803,16 +6923,20 @@ superkingdom Root root:Environmental:Aquatic:Freshwater:Wetlands 1.0 superkingdom Root root:Environmental:Terrestrial:Soil 214.0 superkingdom Root root:Environmental:Aquatic:Marine:Sediment 5.0 superkingdom Root root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 +superkingdom Root root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Root root:Environmental:Aquatic:Freshwater:Lotic 3.0 superkingdom Root root:Environmental:Aquatic 5.0 +superkingdom Root root:Host-associated:Mammals:Digestive system:Midgut 2.0 superkingdom Root root:Engineered:Biogas plant:Wet fermentation 4.0 superkingdom Root root:Environmental:Terrestrial:Soil:Tropical rainforest 7.0 superkingdom Root root:Host-associated:Porifera 2.0 +superkingdom Root root:Engineered:Lab enrichment 7.0 superkingdom Root root:Host-associated:Mammals:Digestive system:Stomach:Rumen 23.0 superkingdom Root root:Environmental:Terrestrial:Soil:Wetlands 13.0 superkingdom Root root:Environmental:Terrestrial:Soil:Grasslands 18.0 superkingdom Root root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 superkingdom Root root:Host-associated:Birds:Digestive system:Ceca 4.0 +superkingdom Root root:Host-associated:Plants:Rhizosphere:Soil 28.0 superkingdom Root root:Host-associated:Human:Digestive system 4.0 superkingdom Root root:Environmental:Aquatic:Freshwater 12.0 superkingdom Root root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -6834,7 +6958,6 @@ superkingdom Root root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4. superkingdom Root root:Engineered:Food production 12.0 superkingdom Root root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 superkingdom Root root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -superkingdom Root root:Host-associated:Plants:Rhizosphere:Soil 28.0 superkingdom Root root:Host-associated:Mammals:Digestive system:Large intestine 5.0 superkingdom Root root:Engineered:Food production:Fermented seafood 2.0 superkingdom Root root:Environmental:Aquatic:Freshwater:Lentic 3.0 @@ -6845,11 +6968,10 @@ superkingdom Root root:Host-associated:Plants:Rhizosphere:Forest soil 6.0 superkingdom Root root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 superkingdom Root root:Engineered:Wastewater:Industrial wastewater 8.0 superkingdom Root root:Engineered:Modeled 4.0 -superkingdom Root root:Host-associated:Insecta:Digestive system 4.0 +superkingdom Root root:Host-associated:Insecta:Digestive system 5.0 superkingdom Root root:Host-associated 10.0 superkingdom Root root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 superkingdom Root root:Host-associated:Mollusca 2.0 -superkingdom Root root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 superkingdom Root root:Environmental:Terrestrial:Soil:Mine 3.0 superkingdom Root root:Environmental:Terrestrial:Soil:Sand 5.0 superkingdom Root root:Environmental:Aquatic:Freshwater:Ice:Glacier 6.0 @@ -6880,7 +7002,6 @@ superkingdom Root root:Host-associated:Fish:Digestive system:Intestine 1.0 superkingdom Root root:Host-associated:Insecta 6.0 superkingdom Root root:Host-associated:Plants:Phylloplane:Endophytes 1.0 superkingdom Root root:Engineered:Built environment 1.0 -superkingdom Root root:Engineered:Lab enrichment 7.0 superkingdom Root root:Environmental:Terrestrial:Soil:Boreal forest 3.0 superkingdom Root root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 superkingdom Root root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -6904,7 +7025,6 @@ superkingdom Root root:Environmental:Aquatic:Aquaculture 1.0 superkingdom Root root:Host-associated:Fish:Skin 1.0 superkingdom Root root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 superkingdom Root root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -superkingdom Root root:Host-associated:Mammals:Digestive system:Midgut 2.0 superkingdom Root root:Environmental:Air 2.0 superkingdom Root root:Host-associated:Arthropoda 2.0 superkingdom Root root:Host-associated:Fungi 1.0 @@ -6939,6 +7059,7 @@ superkingdom Root root:Host-associated:Mammals:Nervous system:Brain 1.0 superkingdom Root root:Environmental:Terrestrial:Volcanic 1.0 superkingdom Root root:Environmental:Aquatic:Lentic 2.0 superkingdom Root root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 +superkingdom Root root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 superkingdom Root root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 superkingdom Root root:Host-associated:Protozoa 1.0 superkingdom Root root:Engineered:Solid waste:Composting:Grass 1.0 @@ -6956,7 +7077,6 @@ superkingdom Root root:Environmental:Terrestrial:Agricultural field 1.0 superkingdom Root root:Host-associated:Mammals:Milk 1.0 superkingdom Root root:Engineered:Solid waste:Solid animal waste 1.0 superkingdom Root root:Host-associated:Annelida 1.0 -superkingdom Root root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 superkingdom Root root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 superkingdom Root root:Host-associated:Spiralia 1.0 superkingdom Root root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 @@ -7006,16 +7126,20 @@ kingdom Bacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 kingdom Bacteria root:Environmental:Terrestrial:Soil 188.0 kingdom Bacteria root:Environmental:Aquatic:Marine:Sediment 5.0 kingdom Bacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 +kingdom Bacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater:Lotic 3.0 kingdom Bacteria root:Environmental:Aquatic 5.0 +kingdom Bacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 kingdom Bacteria root:Engineered:Biogas plant:Wet fermentation 4.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 7.0 kingdom Bacteria root:Host-associated:Porifera 2.0 +kingdom Bacteria root:Engineered:Lab enrichment 7.0 kingdom Bacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 23.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Wetlands 11.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Grasslands 13.0 kingdom Bacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 kingdom Bacteria root:Host-associated:Birds:Digestive system:Ceca 4.0 +kingdom Bacteria root:Host-associated:Plants:Rhizosphere:Soil 28.0 kingdom Bacteria root:Host-associated:Human:Digestive system 3.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater 12.0 kingdom Bacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -7037,7 +7161,6 @@ kingdom Bacteria root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 kingdom Bacteria root:Engineered:Food production 12.0 kingdom Bacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -kingdom Bacteria root:Host-associated:Plants:Rhizosphere:Soil 28.0 kingdom Bacteria root:Host-associated:Mammals:Digestive system:Large intestine 5.0 kingdom Bacteria root:Engineered:Food production:Fermented seafood 2.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater:Lentic 3.0 @@ -7048,11 +7171,10 @@ kingdom Bacteria root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 8.0 kingdom Bacteria root:Engineered:Wastewater:Industrial wastewater 8.0 kingdom Bacteria root:Engineered:Modeled 4.0 -kingdom Bacteria root:Host-associated:Insecta:Digestive system 4.0 +kingdom Bacteria root:Host-associated:Insecta:Digestive system 5.0 kingdom Bacteria root:Host-associated 10.0 kingdom Bacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 kingdom Bacteria root:Host-associated:Mollusca 2.0 -kingdom Bacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Mine 3.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Sand 5.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater:Ice:Glacier 6.0 @@ -7083,7 +7205,6 @@ kingdom Bacteria root:Host-associated:Fish:Digestive system:Intestine 1.0 kingdom Bacteria root:Host-associated:Insecta 6.0 kingdom Bacteria root:Host-associated:Plants:Phylloplane:Endophytes 1.0 kingdom Bacteria root:Engineered:Built environment 1.0 -kingdom Bacteria root:Engineered:Lab enrichment 7.0 kingdom Bacteria root:Environmental:Terrestrial:Soil:Boreal forest 2.0 kingdom Bacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 kingdom Bacteria root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -7107,7 +7228,6 @@ kingdom Bacteria root:Environmental:Aquatic:Aquaculture 1.0 kingdom Bacteria root:Host-associated:Fish:Skin 1.0 kingdom Bacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 kingdom Bacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -kingdom Bacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 kingdom Bacteria root:Environmental:Air 2.0 kingdom Bacteria root:Host-associated:Arthropoda 2.0 kingdom Bacteria root:Engineered:Bioremediation 2.0 @@ -7141,6 +7261,7 @@ kingdom Bacteria root:Host-associated:Mammals:Nervous system:Brain 1.0 kingdom Bacteria root:Environmental:Terrestrial:Volcanic 1.0 kingdom Bacteria root:Environmental:Aquatic:Lentic 2.0 kingdom Bacteria root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 +kingdom Bacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Bacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 kingdom Bacteria root:Host-associated:Protozoa 1.0 kingdom Bacteria root:Engineered:Solid waste:Composting:Grass 1.0 @@ -7158,7 +7279,6 @@ kingdom Bacteria root:Environmental:Terrestrial:Agricultural field 1.0 kingdom Bacteria root:Host-associated:Mammals:Milk 1.0 kingdom Bacteria root:Engineered:Solid waste:Solid animal waste 1.0 kingdom Bacteria root:Host-associated:Annelida 1.0 -kingdom Bacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Bacteria root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 kingdom Bacteria root:Host-associated:Spiralia 1.0 kingdom Bacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 @@ -7166,22 +7286,22 @@ kingdom Bacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Lake 37.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Pond 4.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Sediment 9.0 -phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Fecal 47.0 +phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Fecal 48.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 phylum Cyanobacteria root:Host-associated:Birds:Digestive system:Fecal 7.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 phylum Cyanobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Cyanobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 144.0 -phylum Cyanobacteria root:Environmental:Aquatic:Marine 193.0 +phylum Cyanobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 150.0 +phylum Cyanobacteria root:Environmental:Aquatic:Marine 199.0 phylum Cyanobacteria root:Host-associated:Fish 4.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 -phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic 53.0 -phylum Cyanobacteria root:Host-associated:Mammals:Digestive system 23.0 +phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic 56.0 +phylum Cyanobacteria root:Host-associated:Mammals:Digestive system 24.0 phylum Cyanobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 11.0 phylum Cyanobacteria root:Environmental:Terrestrial:Geologic 2.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Forest soil 7.0 phylum Cyanobacteria root:Environmental:Aquatic:Lentic:Brackish 2.0 -phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 6.0 +phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 7.0 phylum Cyanobacteria root:Host-associated:Human 5.0 phylum Cyanobacteria root:Host-associated:Plants 28.0 phylum Cyanobacteria root:Environmental:Aquatic:Estuary:Sediment 5.0 @@ -7189,42 +7309,46 @@ phylum Cyanobacteria root:Engineered:Food production:Silage fermentation 1.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Large intestine 11.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Agricultural 13.0 phylum Cyanobacteria root:Engineered:Bioreactor 12.0 -phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 7.0 phylum Cyanobacteria root:Engineered:Wastewater:Activated Sludge 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Cyanobacteria root:Host-associated:Human:Skin 22.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Permafrost 4.0 -phylum Cyanobacteria root:Mixed 20.0 +phylum Cyanobacteria root:Mixed 21.0 phylum Cyanobacteria root:Host-associated:Mammals 9.0 phylum Cyanobacteria root:Host-associated:Amphibia 4.0 -phylum Cyanobacteria root:Host-associated:Human:Digestive system:Intestine 1.0 -phylum Cyanobacteria root:Engineered:Food production:Fermented beverages 4.0 +phylum Cyanobacteria root:Host-associated:Human:Digestive system:Intestine 2.0 +phylum Cyanobacteria root:Engineered:Food production:Fermented beverages 5.0 phylum Cyanobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Cyanobacteria root:Engineered:Wastewater 5.0 phylum Cyanobacteria root:Host-associated:Human:Reproductive system:Vagina 8.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 45.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Oral 6.0 -phylum Cyanobacteria root:Engineered:Food production:Dairy products 15.0 +phylum Cyanobacteria root:Engineered:Food production:Dairy products 16.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Contaminated 6.0 phylum Cyanobacteria root:Host-associated:Plants:Phylloplane 8.0 -phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere 18.0 +phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere 19.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 9.0 -phylum Cyanobacteria root:Environmental:Terrestrial:Soil 66.0 +phylum Cyanobacteria root:Environmental:Terrestrial:Soil 67.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Sediment 28.0 -phylum Cyanobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +phylum Cyanobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 10.0 +phylum Cyanobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Lotic 6.0 phylum Cyanobacteria root:Environmental:Aquatic:Sediment 10.0 phylum Cyanobacteria root:Environmental:Aquatic 10.0 +phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Midgut 3.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 phylum Cyanobacteria root:Host-associated:Porifera 13.0 -phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 20.0 +phylum Cyanobacteria root:Engineered:Lab enrichment 5.0 +phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 21.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Wetlands 4.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Grasslands 3.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 phylum Cyanobacteria root:Host-associated:Birds:Digestive system:Ceca 8.0 +phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere:Soil 16.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system 17.0 -phylum Cyanobacteria root:Environmental:Aquatic:Freshwater 11.0 +phylum Cyanobacteria root:Environmental:Aquatic:Freshwater 12.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 phylum Cyanobacteria root:Environmental:Aquatic:Thermal springs 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 17.0 @@ -7246,7 +7370,6 @@ phylum Cyanobacteria root:Engineered:Food production 9.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Cyanobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 7.0 -phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere:Soil 14.0 phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Large intestine 12.0 phylum Cyanobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 phylum Cyanobacteria root:Engineered:Food production:Fermented seafood 2.0 @@ -7259,12 +7382,11 @@ phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 phylum Cyanobacteria root:Engineered:Wastewater:Industrial wastewater 3.0 phylum Cyanobacteria root:Engineered:Modeled 4.0 -phylum Cyanobacteria root:Host-associated:Insecta:Digestive system 5.0 +phylum Cyanobacteria root:Host-associated:Insecta:Digestive system 6.0 phylum Cyanobacteria root:Host-associated 10.0 phylum Cyanobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Cyanobacteria root:Host-associated:Mollusca 4.0 -phylum Cyanobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Cyanobacteria root:Host-associated:Fish:Digestive system 1.0 +phylum Cyanobacteria root:Host-associated:Fish:Digestive system 2.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Mine 2.0 phylum Cyanobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -7272,7 +7394,7 @@ phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacier 9.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Brackish 7.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 phylum Cyanobacteria root:Host-associated:Fish:Digestive system:Foregut 3.0 -phylum Cyanobacteria root:Engineered:Bioreactor:Continuous culture 4.0 +phylum Cyanobacteria root:Engineered:Bioreactor:Continuous culture 5.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 phylum Cyanobacteria root:Host-associated:Human:Reproductive system:Female 1.0 @@ -7281,9 +7403,10 @@ phylum Cyanobacteria root:Environmental:Aquatic:Thermal springs:Sediment 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Groundwater 13.0 -phylum Cyanobacteria root:Environmental:Aquatic:Marine:Marginal Sea 3.0 +phylum Cyanobacteria root:Environmental:Aquatic:Marine:Marginal Sea 4.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Pelagic 8.0 -phylum Cyanobacteria root:Engineered:Wastewater:Water and sludge 6.0 +phylum Cyanobacteria root:Engineered:Wastewater:Water and sludge 7.0 +phylum Cyanobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 11.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Cyanobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 @@ -7293,18 +7416,16 @@ phylum Cyanobacteria root:Host-associated:Mammals:Gastrointestinal tract 3.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 phylum Cyanobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -phylum Cyanobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 10.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Ice 5.0 phylum Cyanobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Crop 1.0 phylum Cyanobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 phylum Cyanobacteria root:Host-associated:Fish:Digestive system:Intestine 2.0 -phylum Cyanobacteria root:Host-associated:Insecta 9.0 +phylum Cyanobacteria root:Host-associated:Insecta 10.0 phylum Cyanobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 phylum Cyanobacteria root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Cyanobacteria root:Engineered:Built environment 7.0 +phylum Cyanobacteria root:Engineered:Built environment 8.0 phylum Cyanobacteria root:Host-associated:Birds:Digestive system 5.0 -phylum Cyanobacteria root:Engineered:Lab enrichment 5.0 phylum Cyanobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 phylum Cyanobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 2.0 @@ -7327,7 +7448,6 @@ phylum Cyanobacteria root:Host-associated:Plants:Rhizome 1.0 phylum Cyanobacteria root:Environmental:Aquatic:Aquaculture 2.0 phylum Cyanobacteria root:Host-associated:Fish:Skin 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 -phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Cyanobacteria root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Cyanobacteria root:Host-associated:Arthropoda 2.0 @@ -7343,6 +7463,7 @@ phylum Cyanobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor phylum Cyanobacteria root:Host-associated:Mammals:Skin 2.0 phylum Cyanobacteria root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 phylum Cyanobacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +phylum Cyanobacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Cyanobacteria root:Host-associated:Birds:Respiratory system 2.0 phylum Cyanobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 phylum Cyanobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 3.0 @@ -7392,15 +7513,17 @@ phylum Chlorobi root:Environmental:Aquatic:Freshwater:Wetlands 1.0 phylum Chlorobi root:Environmental:Terrestrial:Soil 16.0 phylum Chlorobi root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Lotic 3.0 +phylum Chlorobi root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Chlorobi root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +phylum Chlorobi root:Engineered:Lab enrichment 1.0 phylum Chlorobi root:Environmental:Terrestrial:Soil:Wetlands 6.0 +phylum Chlorobi root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater 2.0 phylum Chlorobi root:Engineered:Solid waste:Composting 3.0 phylum Chlorobi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 phylum Chlorobi root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 phylum Chlorobi root:Engineered:Food production 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -phylum Chlorobi root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Lentic 2.0 phylum Chlorobi root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 phylum Chlorobi root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 @@ -7413,11 +7536,10 @@ phylum Chlorobi root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Groundwater 4.0 phylum Chlorobi root:Engineered:Wastewater:Water and sludge 1.0 +phylum Chlorobi root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Chlorobi root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 phylum Chlorobi root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -phylum Chlorobi root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -phylum Chlorobi root:Engineered:Lab enrichment 1.0 phylum Chlorobi root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 phylum Chlorobi root:Engineered:Modeled:Simulated communities (DNA mixture) 2.0 @@ -7425,7 +7547,6 @@ phylum Chlorobi root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 4 phylum Chlorobi root:Engineered 1.0 phylum Chlorobi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 phylum Chlorobi root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -phylum Chlorobi root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Chlorobi root:Host-associated:Arthropoda 1.0 phylum Chlorobi root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Chlorobi root:Engineered:Biotransformation 1.0 @@ -7435,10 +7556,10 @@ phylum Chlorobi root:Engineered:Wastewater:Nutrient removal:Dissolved organics ( phylum Chlorobi root:Host-associated:Mollusca:Digestive system 1.0 phylum Chlorobi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 phylum Chlorobi root:Environmental:Aquatic:Lentic 1.0 +phylum Chlorobi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Chlorobi root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 phylum Chlorobi root:Host-associated:Microbial 1.0 phylum Chlorobi root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 -phylum Chlorobi root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Chloroplast root:Environmental:Aquatic:Freshwater:Lake 16.0 class Chloroplast root:Environmental:Aquatic:Freshwater:Pond 1.0 class Chloroplast root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -7472,9 +7593,11 @@ class Chloroplast root:Engineered:Modeled:Simulated communities (microbial mixtu class Chloroplast root:Environmental:Aquatic:Freshwater:Lotic 3.0 class Chloroplast root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Chloroplast root:Host-associated:Porifera 1.0 +class Chloroplast root:Engineered:Lab enrichment 4.0 class Chloroplast root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 class Chloroplast root:Environmental:Terrestrial:Soil:Wetlands 1.0 class Chloroplast root:Host-associated:Birds:Digestive system:Ceca 1.0 +class Chloroplast root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Chloroplast root:Host-associated:Human:Digestive system 1.0 class Chloroplast root:Environmental:Aquatic:Freshwater 5.0 class Chloroplast root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -7488,12 +7611,11 @@ class Chloroplast root:Host-associated:Mammals:Digestive system:Large intestine: class Chloroplast root:Host-associated:Arthropoda:Digestive system:Gut 3.0 class Chloroplast root:Host-associated:Plants:Root 3.0 class Chloroplast root:Engineered:Food production 6.0 -class Chloroplast root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Chloroplast root:Host-associated:Mammals:Digestive system:Large intestine 2.0 class Chloroplast root:Engineered:Food production:Fermented seafood 1.0 class Chloroplast root:Environmental:Aquatic:Freshwater:Lentic 3.0 class Chloroplast root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 -class Chloroplast root:Host-associated:Insecta:Digestive system 1.0 +class Chloroplast root:Host-associated:Insecta:Digestive system 2.0 class Chloroplast root:Host-associated 6.0 class Chloroplast root:Host-associated:Mollusca 2.0 class Chloroplast root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -7513,7 +7635,6 @@ class Chloroplast root:Environmental:Terrestrial:Soil:Crop 1.0 class Chloroplast root:Host-associated:Fish:Digestive system:Intestine 1.0 class Chloroplast root:Host-associated:Insecta 3.0 class Chloroplast root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -class Chloroplast root:Engineered:Lab enrichment 4.0 class Chloroplast root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 class Chloroplast root:Engineered:Food production:Fermented vegetables 6.0 class Chloroplast root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -7549,32 +7670,35 @@ class Anaerolineae root:Environmental:Aquatic:Estuary:Sediment 7.0 class Anaerolineae root:Host-associated:Human:Digestive system:Large intestine 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Agricultural 12.0 class Anaerolineae root:Engineered:Bioreactor 39.0 -class Anaerolineae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +class Anaerolineae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 19.0 class Anaerolineae root:Engineered:Wastewater:Activated Sludge 49.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Permafrost 2.0 class Anaerolineae root:Mixed 6.0 -class Anaerolineae root:Host-associated:Mammals 1.0 +class Anaerolineae root:Host-associated:Mammals 2.0 class Anaerolineae root:Engineered:Food production:Fermented beverages 2.0 class Anaerolineae root:Engineered:Wastewater 5.0 class Anaerolineae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +class Anaerolineae root:Host-associated:Human:Digestive system:Oral 1.0 class Anaerolineae root:Engineered:Food production:Dairy products 3.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Contaminated 4.0 -class Anaerolineae root:Host-associated:Plants:Rhizosphere 8.0 -class Anaerolineae root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 +class Anaerolineae root:Host-associated:Plants:Rhizosphere 10.0 +class Anaerolineae root:Environmental:Aquatic:Marine:Coastal:Sediment 20.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Wetlands 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil 45.0 -class Anaerolineae root:Environmental:Aquatic:Marine:Sediment 84.0 +class Anaerolineae root:Environmental:Aquatic:Marine:Sediment 86.0 class Anaerolineae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Anaerolineae root:Environmental:Aquatic:Sediment 16.0 class Anaerolineae root:Environmental:Aquatic 3.0 class Anaerolineae root:Engineered:Biogas plant:Wet fermentation 4.0 class Anaerolineae root:Host-associated:Porifera 10.0 +class Anaerolineae root:Engineered:Lab enrichment 7.0 class Anaerolineae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Wetlands 6.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Grasslands 2.0 class Anaerolineae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +class Anaerolineae root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Anaerolineae root:Host-associated:Human:Digestive system 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater 3.0 class Anaerolineae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -7584,6 +7708,7 @@ class Anaerolineae root:Environmental:Aquatic:Marine:Cold seeps 5.0 class Anaerolineae root:Engineered:Solid waste:Composting 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Desert 3.0 class Anaerolineae root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 +class Anaerolineae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 class Anaerolineae root:Environmental:Aquatic:Marine:Hydrothermal vents 4.0 class Anaerolineae root:Engineered:Lab enrichment:Defined media 10.0 class Anaerolineae root:Host-associated:Plants:Root 1.0 @@ -7591,7 +7716,6 @@ class Anaerolineae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4 class Anaerolineae root:Engineered:Food production 1.0 class Anaerolineae root:Environmental:Terrestrial:Deep subsurface 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 15.0 -class Anaerolineae root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Anaerolineae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 class Anaerolineae root:Engineered:Wastewater:Industrial wastewater 7.0 @@ -7601,7 +7725,7 @@ class Anaerolineae root:Environmental:Terrestrial:Soil:Clay 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class Anaerolineae root:Engineered:Bioreactor:Continuous culture 8.0 class Anaerolineae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 -class Anaerolineae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +class Anaerolineae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 class Anaerolineae root:Environmental:Aquatic:Thermal springs:Sediment 3.0 class Anaerolineae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 @@ -7618,7 +7742,6 @@ class Anaerolineae root:Host-associated:Fish:Digestive system:Intestine 1.0 class Anaerolineae root:Host-associated:Insecta 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Anaerolineae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -class Anaerolineae root:Engineered:Lab enrichment 7.0 class Anaerolineae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 class Anaerolineae root:Engineered:Biogas plant 2.0 class Anaerolineae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 @@ -7627,10 +7750,11 @@ class Anaerolineae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminate class Anaerolineae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 class Anaerolineae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 class Anaerolineae root:Engineered 1.0 +class Anaerolineae root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Anaerolineae root:Host-associated:Arthropoda 1.0 class Anaerolineae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -class Anaerolineae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +class Anaerolineae root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 class Anaerolineae root:Engineered:Bioremediation 1.0 class Anaerolineae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Anaerolineae root:Engineered:Bioremediation:Hydrocarbon 1.0 @@ -7648,6 +7772,7 @@ class Anaerolineae root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 class Anaerolineae root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 class Anaerolineae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 class Anaerolineae root:Environmental:Aquatic:Marine:Wetlands 1.0 +class Anaerolineae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Anaerolineae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Anaerolineae root:Host-associated:Microbial 1.0 class Anaerolineae root:Environmental:Aquatic:Marine:Volcanic 1.0 @@ -7657,7 +7782,6 @@ class Anaerolineae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C class Anaerolineae root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Anaerolineae root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 class Anaerolineae root:Engineered:Solid waste:Solid animal waste 1.0 -class Anaerolineae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Anaerolineae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Nostocophycideae root:Environmental:Aquatic:Freshwater:Lake 7.0 class Nostocophycideae root:Environmental:Aquatic:Marine 2.0 @@ -7686,7 +7810,7 @@ order Actinomycetales root:Host-associated:Human:Digestive system:Oral:Saliva 25 order Actinomycetales root:Host-associated:Birds:Digestive system:Fecal 2.0 order Actinomycetales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 order Actinomycetales root:Host-associated:Human:Digestive system:Large intestine:Fecal 30.0 -order Actinomycetales root:Environmental:Aquatic:Marine 9.0 +order Actinomycetales root:Environmental:Aquatic:Marine 10.0 order Actinomycetales root:Host-associated:Fish 3.0 order Actinomycetales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Actinomycetales root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -7694,7 +7818,7 @@ order Actinomycetales root:Host-associated:Mammals:Digestive system 2.0 order Actinomycetales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 order Actinomycetales root:Environmental:Terrestrial:Geologic 1.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Forest soil 21.0 -order Actinomycetales root:Host-associated:Human 14.0 +order Actinomycetales root:Host-associated:Human 15.0 order Actinomycetales root:Host-associated:Plants 18.0 order Actinomycetales root:Engineered:Food production:Silage fermentation 1.0 order Actinomycetales root:Host-associated:Human:Digestive system:Large intestine 2.0 @@ -7710,7 +7834,7 @@ order Actinomycetales root:Engineered:Food production:Fermented beverages 3.0 order Actinomycetales root:Engineered:Wastewater 1.0 order Actinomycetales root:Host-associated:Human:Reproductive system:Vagina 10.0 order Actinomycetales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 -order Actinomycetales root:Host-associated:Human:Digestive system:Oral 53.0 +order Actinomycetales root:Host-associated:Human:Digestive system:Oral 54.0 order Actinomycetales root:Engineered:Food production:Dairy products 20.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Contaminated 10.0 order Actinomycetales root:Host-associated:Plants:Phylloplane 7.0 @@ -7724,10 +7848,12 @@ order Actinomycetales root:Environmental:Aquatic:Freshwater:Lotic 3.0 order Actinomycetales root:Environmental:Aquatic 1.0 order Actinomycetales root:Engineered:Biogas plant:Wet fermentation 3.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Tropical rainforest 5.0 +order Actinomycetales root:Engineered:Lab enrichment 4.0 order Actinomycetales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Grasslands 12.0 order Actinomycetales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 +order Actinomycetales root:Host-associated:Plants:Rhizosphere:Soil 19.0 order Actinomycetales root:Host-associated:Human:Digestive system 7.0 order Actinomycetales root:Environmental:Aquatic:Freshwater 6.0 order Actinomycetales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -7742,7 +7868,6 @@ order Actinomycetales root:Host-associated:Arthropoda:Digestive system:Gut 4.0 order Actinomycetales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Actinomycetales root:Host-associated:Plants:Root 3.0 order Actinomycetales root:Engineered:Food production 6.0 -order Actinomycetales root:Host-associated:Plants:Rhizosphere:Soil 19.0 order Actinomycetales root:Host-associated:Mammals:Digestive system:Large intestine 3.0 order Actinomycetales root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 order Actinomycetales root:Engineered:Food production:Fermented seafood 2.0 @@ -7753,7 +7878,7 @@ order Actinomycetales root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Oil-contaminated 6.0 order Actinomycetales root:Engineered:Wastewater:Industrial wastewater 5.0 order Actinomycetales root:Engineered:Modeled 2.0 -order Actinomycetales root:Host-associated:Insecta:Digestive system 2.0 +order Actinomycetales root:Host-associated:Insecta:Digestive system 3.0 order Actinomycetales root:Host-associated 4.0 order Actinomycetales root:Host-associated:Mollusca 1.0 order Actinomycetales root:Environmental:Terrestrial:Soil:Mine 3.0 @@ -7781,7 +7906,6 @@ order Actinomycetales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Actinomycetales root:Host-associated:Insecta 4.0 order Actinomycetales root:Engineered:Built environment 2.0 order Actinomycetales root:Host-associated:Birds:Digestive system 1.0 -order Actinomycetales root:Engineered:Lab enrichment 4.0 order Actinomycetales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 2.0 order Actinomycetales root:Engineered:Biogas plant 1.0 order Actinomycetales root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -7818,6 +7942,7 @@ order Actinomycetales root:Host-associated:Mammals:Nervous system:Brain 1.0 order Actinomycetales root:Environmental:Terrestrial:Volcanic 1.0 order Actinomycetales root:Environmental:Aquatic:Lentic 2.0 order Actinomycetales root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 +order Actinomycetales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Actinomycetales root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order Actinomycetales root:Host-associated:Protozoa 1.0 order Actinomycetales root:Engineered:Solid waste:Composting:Grass 1.0 @@ -7826,7 +7951,6 @@ order Actinomycetales root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1. order Actinomycetales root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 order Actinomycetales root:Environmental:Terrestrial:Agricultural field 1.0 order Actinomycetales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -order Actinomycetales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Actinomycetales root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 order Rickettsiales root:Environmental:Aquatic:Freshwater:Lake 16.0 order Rickettsiales root:Host-associated:Mammals:Digestive system:Fecal 4.0 @@ -7846,17 +7970,19 @@ order Rickettsiales root:Host-associated:Mammals 1.0 order Rickettsiales root:Host-associated:Amphibia 1.0 order Rickettsiales root:Host-associated:Human:Digestive system:Intestine 1.0 order Rickettsiales root:Engineered:Food production:Fermented beverages 2.0 -order Rickettsiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +order Rickettsiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 order Rickettsiales root:Engineered:Food production:Dairy products 1.0 order Rickettsiales root:Host-associated:Plants:Phylloplane 3.0 order Rickettsiales root:Host-associated:Plants:Rhizosphere 1.0 order Rickettsiales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Rickettsiales root:Environmental:Terrestrial:Soil 9.0 +order Rickettsiales root:Environmental:Terrestrial:Soil 10.0 order Rickettsiales root:Environmental:Aquatic:Marine:Sediment 1.0 order Rickettsiales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Rickettsiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Rickettsiales root:Environmental:Aquatic:Freshwater:Lotic 2.0 order Rickettsiales root:Host-associated:Porifera 1.0 order Rickettsiales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +order Rickettsiales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Rickettsiales root:Host-associated:Human:Digestive system 1.0 order Rickettsiales root:Environmental:Aquatic:Freshwater 3.0 order Rickettsiales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 @@ -7871,10 +7997,9 @@ order Rickettsiales root:Engineered:Food production 5.0 order Rickettsiales root:Environmental:Terrestrial:Deep subsurface 1.0 order Rickettsiales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Rickettsiales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -order Rickettsiales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Rickettsiales root:Environmental:Aquatic:Freshwater:Lentic 3.0 order Rickettsiales root:Environmental:Aquatic:Estuary 1.0 -order Rickettsiales root:Host-associated:Insecta:Digestive system 3.0 +order Rickettsiales root:Host-associated:Insecta:Digestive system 4.0 order Rickettsiales root:Host-associated 5.0 order Rickettsiales root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 order Rickettsiales root:Host-associated:Mollusca 1.0 @@ -7891,11 +8016,11 @@ order Rickettsiales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Rickettsiales root:Environmental:Aquatic:Marine:Pelagic 1.0 order Rickettsiales root:Engineered:Wastewater:Water and sludge 1.0 order Rickettsiales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Rickettsiales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Rickettsiales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Rickettsiales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Rickettsiales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 order Rickettsiales root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -order Rickettsiales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Rickettsiales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Rickettsiales root:Host-associated:Insecta 4.0 order Rickettsiales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 @@ -7918,18 +8043,19 @@ order Rickettsiales root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 order Rickettsiales root:Host-associated:Algae:Brown Algae 1.0 order Rickettsiales root:Host-associated:Invertebrates:Cnidaria 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Lake 3.0 -order Rhodocyclales root:Environmental:Aquatic:Freshwater:Sediment 8.0 +order Rhodocyclales root:Environmental:Aquatic:Freshwater:Sediment 9.0 order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -order Rhodocyclales root:Environmental:Aquatic:Marine 2.0 +order Rhodocyclales root:Environmental:Aquatic:Marine 3.0 order Rhodocyclales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Rhodocyclales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Rhodocyclales root:Host-associated:Human 1.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Agricultural 4.0 order Rhodocyclales root:Engineered:Bioreactor 15.0 -order Rhodocyclales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +order Rhodocyclales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 5.0 -order Rhodocyclales root:Engineered:Wastewater:Activated Sludge 43.0 +order Rhodocyclales root:Engineered:Wastewater:Activated Sludge 44.0 +order Rhodocyclales root:Mixed 1.0 order Rhodocyclales root:Host-associated:Amphibia 2.0 order Rhodocyclales root:Engineered:Wastewater 14.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Contaminated 3.0 @@ -7941,8 +8067,10 @@ order Rhodocyclales root:Environmental:Aquatic:Marine:Sediment 7.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Rhodocyclales root:Environmental:Aquatic:Sediment 4.0 order Rhodocyclales root:Environmental:Aquatic 1.0 +order Rhodocyclales root:Engineered:Lab enrichment 1.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Rhodocyclales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +order Rhodocyclales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater 4.0 order Rhodocyclales root:Environmental:Aquatic:Thermal springs 2.0 order Rhodocyclales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -7953,7 +8081,6 @@ order Rhodocyclales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Rhodocyclales root:Engineered:Lab enrichment:Defined media 1.0 order Rhodocyclales root:Host-associated:Plants:Root 2.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -order Rhodocyclales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Rhodocyclales root:Engineered:Wastewater:Industrial wastewater 11.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Mine 2.0 @@ -7964,18 +8091,18 @@ order Rhodocyclales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1 order Rhodocyclales root:Engineered:Bioreactor:Continuous culture 5.0 order Rhodocyclales root:Engineered:Solid waste 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Groundwater 8.0 -order Rhodocyclales root:Engineered:Wastewater:Water and sludge 7.0 +order Rhodocyclales root:Engineered:Wastewater:Water and sludge 8.0 order Rhodocyclales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Rhodocyclales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Ice 1.0 -order Rhodocyclales root:Engineered:Lab enrichment 1.0 order Rhodocyclales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Rhodocyclales root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 order Rhodocyclales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 5.0 order Rhodocyclales root:Engineered 2.0 order Rhodocyclales root:Environmental:Aquatic:Aquaculture 1.0 order Rhodocyclales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +order Rhodocyclales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Rhodocyclales root:Engineered:Bioremediation 2.0 order Rhodocyclales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 order Rhodocyclales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -7985,9 +8112,9 @@ order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Dissolved organi order Rhodocyclales root:Host-associated:Human:Circulatory system 1.0 order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 order Rhodocyclales root:Environmental:Aquatic:Lentic 1.0 +order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order Rhodocyclales root:Host-associated:Microbial 1.0 -order Rhodocyclales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Rhodocyclales root:Host-associated:Spiralia 1.0 order Stramenopiles root:Environmental:Aquatic:Freshwater:Lake 9.0 order Stramenopiles root:Environmental:Aquatic:Marine 13.0 @@ -8039,6 +8166,7 @@ order Methylophilales root:Environmental:Aquatic:Freshwater:Wetlands 1.0 order Methylophilales root:Environmental:Terrestrial:Soil 2.0 order Methylophilales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Methylophilales root:Environmental:Aquatic:Freshwater:Lotic 1.0 +order Methylophilales root:Engineered:Lab enrichment 1.0 order Methylophilales root:Environmental:Aquatic:Freshwater 4.0 order Methylophilales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Methylophilales root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -8050,7 +8178,6 @@ order Methylophilales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 order Methylophilales root:Engineered:Wastewater:Water and sludge 1.0 order Methylophilales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 order Methylophilales root:Host-associated:Insecta 1.0 -order Methylophilales root:Engineered:Lab enrichment 1.0 order Methylophilales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Methylophilales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 order Methylophilales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -8061,9 +8188,9 @@ order H39 root:Environmental:Aquatic:Freshwater:Lake 1.0 order H39 root:Environmental:Aquatic 1.0 order Acidimicrobiales root:Environmental:Aquatic:Freshwater:Lake 16.0 order Acidimicrobiales root:Environmental:Aquatic:Freshwater:Sediment 4.0 -order Acidimicrobiales root:Environmental:Aquatic:Marine 25.0 +order Acidimicrobiales root:Environmental:Aquatic:Marine 26.0 order Acidimicrobiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -order Acidimicrobiales root:Environmental:Aquatic:Marine:Oceanic 6.0 +order Acidimicrobiales root:Environmental:Aquatic:Marine:Oceanic 7.0 order Acidimicrobiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 order Acidimicrobiales root:Environmental:Terrestrial:Soil:Forest soil 3.0 order Acidimicrobiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -8091,6 +8218,7 @@ order Acidimicrobiales root:Environmental:Aquatic 1.0 order Acidimicrobiales root:Host-associated:Porifera 3.0 order Acidimicrobiales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Acidimicrobiales root:Environmental:Terrestrial:Soil:Grasslands 8.0 +order Acidimicrobiales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Acidimicrobiales root:Environmental:Aquatic:Freshwater 2.0 order Acidimicrobiales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Acidimicrobiales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -8102,7 +8230,6 @@ order Acidimicrobiales root:Host-associated:Algae:Red algae 5.0 order Acidimicrobiales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Acidimicrobiales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 order Acidimicrobiales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Acidimicrobiales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Acidimicrobiales root:Environmental:Aquatic:Freshwater:Lentic 2.0 order Acidimicrobiales root:Environmental:Aquatic:Estuary 19.0 order Acidimicrobiales root:Host-associated:Animal:Digestive system 1.0 @@ -8133,8 +8260,8 @@ order Acidimicrobiales root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 order Acidimicrobiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 order Acidimicrobiales root:Environmental:Terrestrial:Volcanic 1.0 order Acidimicrobiales root:Environmental:Aquatic:Lentic 2.0 -order Acidimicrobiales root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 order Acidimicrobiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +order Acidimicrobiales root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 order Nostocales root:Environmental:Aquatic:Freshwater:Lake 8.0 order Nostocales root:Environmental:Aquatic:Marine 10.0 order Nostocales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -8145,7 +8272,8 @@ order Nostocales root:Host-associated:Plants 1.0 order Nostocales root:Environmental:Terrestrial:Soil:Permafrost 2.0 order Nostocales root:Mixed 2.0 order Nostocales root:Host-associated:Plants:Phylloplane 1.0 -order Nostocales root:Environmental:Terrestrial:Soil 1.0 +order Nostocales root:Host-associated:Plants:Rhizosphere 1.0 +order Nostocales root:Environmental:Terrestrial:Soil 2.0 order Nostocales root:Environmental:Aquatic:Marine:Sediment 2.0 order Nostocales root:Environmental:Aquatic:Sediment 1.0 order Nostocales root:Environmental:Aquatic 3.0 @@ -8160,51 +8288,51 @@ order Nostocales root:Environmental:Aquatic:Freshwater:Ice:Glacier 3.0 order Nostocales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Nostocales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Nostocales root:Engineered:Wastewater:Water and sludge 1.0 -order Nostocales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +order Nostocales root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 order Nostocales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 19.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Pond 5.0 -family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 5.0 +family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 6.0 family Flavobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 family Flavobacteriaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 family Flavobacteriaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine 281.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine 302.0 family Flavobacteriaceae root:Host-associated:Fish 5.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 11.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 73.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 76.0 family Flavobacteriaceae root:Host-associated:Mammals:Digestive system 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Flavobacteriaceae root:Environmental:Aquatic:Lentic:Brackish 2.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 12.0 family Flavobacteriaceae root:Host-associated:Human 5.0 family Flavobacteriaceae root:Host-associated:Plants 8.0 family Flavobacteriaceae root:Environmental:Aquatic:Estuary:Sediment 12.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Flavobacteriaceae root:Engineered:Bioreactor 21.0 -family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 +family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 family Flavobacteriaceae root:Engineered:Wastewater:Activated Sludge 23.0 family Flavobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 family Flavobacteriaceae root:Host-associated:Human:Skin 7.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Flavobacteriaceae root:Mixed 13.0 +family Flavobacteriaceae root:Mixed 14.0 family Flavobacteriaceae root:Host-associated:Amphibia 4.0 family Flavobacteriaceae root:Engineered:Food production:Fermented beverages 2.0 family Flavobacteriaceae root:Engineered:Wastewater 13.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 57.0 -family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral 28.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 59.0 +family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral 29.0 family Flavobacteriaceae root:Engineered:Food production:Dairy products 3.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 family Flavobacteriaceae root:Host-associated:Plants:Phylloplane 6.0 family Flavobacteriaceae root:Host-associated:Plants:Rhizosphere 24.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 23.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil 30.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine:Sediment 89.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine:Sediment 90.0 family Flavobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic 5.0 family Flavobacteriaceae root:Environmental:Aquatic:Sediment 11.0 @@ -8212,10 +8340,12 @@ family Flavobacteriaceae root:Environmental:Aquatic 4.0 family Flavobacteriaceae root:Engineered:Biogas plant:Wet fermentation 2.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Flavobacteriaceae root:Host-associated:Porifera 12.0 +family Flavobacteriaceae root:Engineered:Lab enrichment 3.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 family Flavobacteriaceae root:Engineered:Lab Synthesis 1.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Flavobacteriaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +family Flavobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater 8.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -8228,6 +8358,7 @@ family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Desert 3.0 family Flavobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 7.0 family Flavobacteriaceae root:Host-associated:Algae:Red algae 9.0 +family Flavobacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 family Flavobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 family Flavobacteriaceae root:Host-associated:Plants:Root 3.0 @@ -8237,7 +8368,7 @@ family Flavobacteriaceae root:Environmental:Aquatic:Marine:Neritic zone 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 family Flavobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -family Flavobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 +family Flavobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Flavobacteriaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 4.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 @@ -8250,7 +8381,7 @@ family Flavobacteriaceae root:Host-associated:Insecta:Digestive system 3.0 family Flavobacteriaceae root:Host-associated 5.0 family Flavobacteriaceae root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 family Flavobacteriaceae root:Host-associated:Mollusca 4.0 -family Flavobacteriaceae root:Host-associated:Fish:Digestive system 1.0 +family Flavobacteriaceae root:Host-associated:Fish:Digestive system 2.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Sand 4.0 family Flavobacteriaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 4.0 @@ -8260,15 +8391,16 @@ family Flavobacteriaceae root:Engineered:Bioreactor:Continuous culture 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 5.0 family Flavobacteriaceae root:Engineered:Solid waste 1.0 -family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater 9.0 +family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater 11.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -family Flavobacteriaceae root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +family Flavobacteriaceae root:Environmental:Aquatic:Marine:Marginal Sea 6.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Pelagic 14.0 -family Flavobacteriaceae root:Engineered:Wastewater:Water and sludge 6.0 -family Flavobacteriaceae root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +family Flavobacteriaceae root:Engineered:Wastewater:Water and sludge 8.0 +family Flavobacteriaceae root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +family Flavobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone 2.0 family Flavobacteriaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Flavobacteriaceae root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -8276,14 +8408,12 @@ family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 10.0 family Flavobacteriaceae root:Host-associated:Reptile:Oral cavity 1.0 -family Flavobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Ice 4.0 family Flavobacteriaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 family Flavobacteriaceae root:Host-associated:Fish:Digestive system:Intestine 2.0 -family Flavobacteriaceae root:Host-associated:Insecta 3.0 +family Flavobacteriaceae root:Host-associated:Insecta 4.0 family Flavobacteriaceae root:Engineered:Built environment 2.0 -family Flavobacteriaceae root:Engineered:Lab enrichment 3.0 family Flavobacteriaceae root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 family Flavobacteriaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 @@ -8307,11 +8437,13 @@ family Flavobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Micro family Flavobacteriaceae root:Host-associated:Arthropoda 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +family Flavobacteriaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 family Flavobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 family Flavobacteriaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Flavobacteriaceae root:Host-associated:Mammals:Skin 3.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +family Flavobacteriaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Flavobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 family Flavobacteriaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 family Flavobacteriaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -8349,7 +8481,7 @@ family ACK-M1 root:Engineered:Bioreactor:Continuous culture:Marine sediment inoc family ACK-M1 root:Environmental:Aquatic:Lentic 2.0 family Pelagibacteraceae root:Environmental:Aquatic:Freshwater:Lake 14.0 family Pelagibacteraceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Pelagibacteraceae root:Environmental:Aquatic:Marine 104.0 +family Pelagibacteraceae root:Environmental:Aquatic:Marine 105.0 family Pelagibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Pelagibacteraceae root:Environmental:Aquatic:Marine:Oceanic 30.0 family Pelagibacteraceae root:Environmental:Aquatic:Lentic:Brackish 2.0 @@ -8378,10 +8510,11 @@ family Pelagibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contamina family Pelagibacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Pelagibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 family Pelagibacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +family Pelagibacteraceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Pelagibacteraceae root:Environmental:Aquatic:Marine:Pelagic 7.0 family Pelagibacteraceae root:Engineered:Wastewater:Water and sludge 1.0 -family Pelagibacteraceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Pelagibacteraceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Pelagibacteraceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Pelagibacteraceae root:Host-associated:Insecta 1.0 family Pelagibacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Pelagibacteraceae root:Engineered 2.0 @@ -8403,7 +8536,7 @@ family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Rhodocyclaceae root:Engineered:Bioreactor 2.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 -family Rhodocyclaceae root:Engineered:Wastewater:Activated Sludge 11.0 +family Rhodocyclaceae root:Engineered:Wastewater:Activated Sludge 12.0 family Rhodocyclaceae root:Host-associated:Amphibia 3.0 family Rhodocyclaceae root:Engineered:Food production:Fermented beverages 1.0 family Rhodocyclaceae root:Engineered:Wastewater 3.0 @@ -8417,14 +8550,15 @@ family Rhodocyclaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Sediment 2.0 family Rhodocyclaceae root:Environmental:Aquatic 1.0 +family Rhodocyclaceae root:Engineered:Lab enrichment 1.0 family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Rhodocyclaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +family Rhodocyclaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater 3.0 family Rhodocyclaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 family Rhodocyclaceae root:Engineered:Lab enrichment:Defined media 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Rhodocyclaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family Rhodocyclaceae root:Engineered:Wastewater:Industrial wastewater 7.0 family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Mine 2.0 @@ -8438,7 +8572,6 @@ family Rhodocyclaceae root:Engineered:Wastewater:Water and sludge 9.0 family Rhodocyclaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 -family Rhodocyclaceae root:Engineered:Lab enrichment 1.0 family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family Rhodocyclaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 @@ -8454,11 +8587,11 @@ family Rhodocyclaceae root:Host-associated:Human:Circulatory system 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 family Rhodocyclaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 family Rhodocyclaceae root:Environmental:Aquatic:Lentic 1.0 +family Rhodocyclaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Rhodocyclaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 family Rhodocyclaceae root:Host-associated:Microbial 1.0 family Rhodocyclaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 family Rhodocyclaceae root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 -family Rhodocyclaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Rhodocyclaceae root:Host-associated:Spiralia 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Lake 15.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Pond 1.0 @@ -8491,7 +8624,9 @@ family Oxalobacteraceae root:Engineered:Modeled:Simulated communities (microbial family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Lotic 4.0 family Oxalobacteraceae root:Environmental:Aquatic 1.0 family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +family Oxalobacteraceae root:Engineered:Lab enrichment 4.0 family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Oxalobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 8.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater 5.0 family Oxalobacteraceae root:Environmental:Aquatic:Thermal springs 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -8502,7 +8637,6 @@ family Oxalobacteraceae root:Host-associated:Human:Digestive system:Oral:Subging family Oxalobacteraceae root:Host-associated:Plants:Root 2.0 family Oxalobacteraceae root:Engineered:Food production 3.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Oxalobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 8.0 family Oxalobacteraceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 family Oxalobacteraceae root:Engineered:Food production:Fermented seafood 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -8517,14 +8651,13 @@ family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Clay 1.0 family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family Oxalobacteraceae root:Engineered:Bioreactor:Continuous culture 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 -family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 6.0 +family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 8.0 family Oxalobacteraceae root:Engineered:Wastewater:Water and sludge 2.0 family Oxalobacteraceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Ice 5.0 family Oxalobacteraceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Oxalobacteraceae root:Engineered:Built environment 2.0 -family Oxalobacteraceae root:Engineered:Lab enrichment 4.0 family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family Oxalobacteraceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Oxalobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -8533,8 +8666,9 @@ family Oxalobacteraceae root:Environmental 2.0 family Oxalobacteraceae root:Host-associated:Animal 1.0 family Oxalobacteraceae root:Engineered 1.0 family Oxalobacteraceae root:Host-associated:Plants:Rhizome 1.0 -family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +family Oxalobacteraceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 family Oxalobacteraceae root:Engineered:Bioremediation 2.0 +family Oxalobacteraceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Oxalobacteraceae root:Host-associated:Human:Circulatory system 1.0 family Oxalobacteraceae root:Environmental:Aquatic:Lentic 2.0 family Oxalobacteraceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 @@ -8546,9 +8680,9 @@ family C111 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family C111 root:Environmental:Terrestrial:Soil 5.0 family C111 root:Environmental:Aquatic:Freshwater:Lotic 2.0 family C111 root:Environmental:Aquatic 1.0 +family C111 root:Host-associated:Plants:Rhizosphere:Soil 1.0 family C111 root:Environmental:Aquatic:Freshwater 2.0 family C111 root:Environmental:Aquatic:Marine:Coastal 2.0 -family C111 root:Host-associated:Plants:Rhizosphere:Soil 1.0 family C111 root:Environmental:Aquatic:Freshwater:Lentic 2.0 family C111 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family C111 root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 @@ -8589,10 +8723,10 @@ family Methylophilaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Methylophilaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Methylophilaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Methylophilaceae root:Environmental:Aquatic:Sediment 3.0 +family Methylophilaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Methylophilaceae root:Environmental:Aquatic:Freshwater 4.0 family Methylophilaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Methylophilaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Methylophilaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Methylophilaceae root:Environmental:Aquatic:Estuary 3.0 family Methylophilaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Methylophilaceae root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -8629,15 +8763,16 @@ genus CandidatusSolibacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1. genus CandidatusSolibacter root:Environmental:Terrestrial:Soil 87.0 genus CandidatusSolibacter root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 +genus CandidatusSolibacter root:Engineered:Lab enrichment 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Wetlands 7.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Grasslands 6.0 +genus CandidatusSolibacter root:Host-associated:Plants:Rhizosphere:Soil 10.0 genus CandidatusSolibacter root:Environmental:Aquatic:Freshwater 2.0 genus CandidatusSolibacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus CandidatusSolibacter root:Engineered:Solid waste:Composting 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Desert 8.0 genus CandidatusSolibacter root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus CandidatusSolibacter root:Host-associated:Plants:Root 2.0 -genus CandidatusSolibacter root:Host-associated:Plants:Rhizosphere:Soil 10.0 genus CandidatusSolibacter root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus CandidatusSolibacter root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 @@ -8647,23 +8782,22 @@ genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Crop:Agricultural genus CandidatusSolibacter root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus CandidatusSolibacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus CandidatusSolibacter root:Engineered:Wastewater:Water and sludge 1.0 -genus CandidatusSolibacter root:Engineered:Lab enrichment 1.0 genus CandidatusSolibacter root:Engineered:Bioremediation 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus CandidatusSolibacter root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Soil:Mine drainage 1.0 genus CandidatusSolibacter root:Environmental:Terrestrial:Volcanic 1.0 genus CandidatusSolibacter root:Environmental:Aquatic:Lentic 1.0 +genus CandidatusSolibacter root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus CandidatusSolibacter root:Host-associated:Protozoa 1.0 genus CandidatusSolibacter root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 -genus CandidatusSolibacter root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lake 14.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Pond 3.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Sediment 6.0 genus Flavobacterium root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Flavobacterium root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -genus Flavobacterium root:Environmental:Aquatic:Marine 40.0 +genus Flavobacterium root:Environmental:Aquatic:Marine 41.0 genus Flavobacterium root:Host-associated:Fish 1.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Oceanic 6.0 @@ -8679,24 +8813,25 @@ genus Flavobacterium root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 11.0 genus Flavobacterium root:Engineered:Wastewater:Activated Sludge 14.0 genus Flavobacterium root:Environmental:Terrestrial:Soil:Permafrost 3.0 -genus Flavobacterium root:Mixed 3.0 +genus Flavobacterium root:Mixed 4.0 genus Flavobacterium root:Host-associated:Mammals 1.0 genus Flavobacterium root:Host-associated:Amphibia 2.0 genus Flavobacterium root:Engineered:Food production:Fermented beverages 1.0 genus Flavobacterium root:Engineered:Wastewater 10.0 -genus Flavobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 36.0 +genus Flavobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 37.0 genus Flavobacterium root:Engineered:Food production:Dairy products 1.0 genus Flavobacterium root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Flavobacterium root:Host-associated:Plants:Phylloplane 4.0 genus Flavobacterium root:Host-associated:Plants:Rhizosphere 28.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -genus Flavobacterium root:Environmental:Terrestrial:Soil 26.0 +genus Flavobacterium root:Environmental:Terrestrial:Soil 27.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Sediment 9.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lotic 4.0 genus Flavobacterium root:Environmental:Aquatic:Sediment 2.0 genus Flavobacterium root:Environmental:Aquatic 1.0 genus Flavobacterium root:Host-associated:Porifera 1.0 genus Flavobacterium root:Engineered:Lab Synthesis 1.0 +genus Flavobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Flavobacterium root:Host-associated:Human:Digestive system 1.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater 5.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Coastal 6.0 @@ -8705,7 +8840,6 @@ genus Flavobacterium root:Environmental:Aquatic:Freshwater:Drinking water 2.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Flavobacterium root:Host-associated:Plants:Root 4.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -genus Flavobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lentic 2.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Flavobacterium root:Environmental:Aquatic:Estuary 22.0 @@ -8720,18 +8854,19 @@ genus Flavobacterium root:Engineered:Bioreactor:Continuous culture 2.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Flavobacterium root:Engineered:Solid waste 1.0 -genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +genus Flavobacterium root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -genus Flavobacterium root:Environmental:Aquatic:Freshwater:Groundwater 4.0 +genus Flavobacterium root:Environmental:Aquatic:Freshwater:Groundwater 6.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -genus Flavobacterium root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Flavobacterium root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Pelagic 3.0 -genus Flavobacterium root:Engineered:Wastewater:Water and sludge 5.0 +genus Flavobacterium root:Engineered:Wastewater:Water and sludge 6.0 genus Flavobacterium root:Host-associated:Reptile:Oral cavity 1.0 genus Flavobacterium root:Environmental:Aquatic:Freshwater:Ice 4.0 genus Flavobacterium root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 genus Flavobacterium root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 +genus Flavobacterium root:Host-associated:Insecta 1.0 genus Flavobacterium root:Engineered:Built environment 1.0 genus Flavobacterium root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 genus Flavobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -8752,8 +8887,8 @@ genus Flavobacterium root:Engineered:Wastewater:Industrial wastewater:Petrochemi genus Skermanella root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Skermanella root:Environmental:Aquatic:Marine 4.0 genus Skermanella root:Mixed 1.0 -genus Skermanella root:Environmental:Terrestrial:Soil:Desert 1.0 genus Skermanella root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Skermanella root:Environmental:Terrestrial:Soil:Desert 1.0 genus Skermanella root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Skermanella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Nitrosomonas root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -8763,8 +8898,8 @@ genus Nitrosomonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 genus Nitrosomonas root:Environmental:Aquatic:Marine:Oceanic 3.0 genus Nitrosomonas root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Nitrosomonas root:Engineered:Bioreactor 3.0 -genus Nitrosomonas root:Engineered:Wastewater:Activated Sludge 8.0 -genus Nitrosomonas root:Environmental:Aquatic:Marine:Sediment 9.0 +genus Nitrosomonas root:Engineered:Wastewater:Activated Sludge 9.0 +genus Nitrosomonas root:Environmental:Aquatic:Marine:Sediment 10.0 genus Nitrosomonas root:Environmental:Aquatic 1.0 genus Nitrosomonas root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 genus Nitrosomonas root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -8784,11 +8919,12 @@ genus Achromobacter root:Environmental:Aquatic:Freshwater:Wetlands 1.0 genus Achromobacter root:Environmental:Terrestrial:Soil 5.0 genus Achromobacter root:Environmental:Aquatic 1.0 genus Achromobacter root:Host-associated:Porifera 1.0 +genus Achromobacter root:Engineered:Lab enrichment 1.0 +genus Achromobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Achromobacter root:Engineered:Solid waste:Composting 1.0 genus Achromobacter root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Achromobacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Achromobacter root:Environmental:Terrestrial:Soil:Sand 1.0 -genus Achromobacter root:Engineered:Lab enrichment 1.0 genus Achromobacter root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Achromobacter root:Host-associated:Human:Circulatory system 1.0 genus Sediminibacterium root:Environmental:Aquatic:Freshwater:Lake 13.0 @@ -8811,13 +8947,13 @@ genus Sediminibacterium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Sediminibacterium root:Environmental:Aquatic:Freshwater:Lotic 3.0 genus Sediminibacterium root:Environmental:Aquatic:Sediment 1.0 genus Sediminibacterium root:Environmental:Aquatic 1.0 +genus Sediminibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Sediminibacterium root:Environmental:Aquatic:Freshwater 1.0 genus Sediminibacterium root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Sediminibacterium root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Sediminibacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Sediminibacterium root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Sediminibacterium root:Engineered:Food production 1.0 -genus Sediminibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Sediminibacterium root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Sediminibacterium root:Engineered:Modeled 1.0 genus Sediminibacterium root:Host-associated:Insecta:Digestive system 2.0 @@ -8863,6 +8999,8 @@ genus Planctomyces root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Planctomyces root:Environmental:Terrestrial:Soil 15.0 genus Planctomyces root:Environmental:Aquatic:Marine:Sediment 1.0 genus Planctomyces root:Host-associated:Porifera 1.0 +genus Planctomyces root:Engineered:Lab enrichment 1.0 +genus Planctomyces root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Planctomyces root:Environmental:Aquatic:Freshwater 1.0 genus Planctomyces root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Planctomyces root:Environmental:Aquatic:Marine:Coastal 3.0 @@ -8870,7 +9008,6 @@ genus Planctomyces root:Engineered:Solid waste:Composting 2.0 genus Planctomyces root:Environmental:Terrestrial:Soil:Desert 1.0 genus Planctomyces root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Planctomyces root:Engineered:Food production 1.0 -genus Planctomyces root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Planctomyces root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 genus Planctomyces root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Planctomyces root:Host-associated:Insecta:Digestive system 1.0 @@ -8881,7 +9018,6 @@ genus Planctomyces root:Environmental:Aquatic:Freshwater:Drinking water:Delivery genus Planctomyces root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Planctomyces root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 genus Planctomyces root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 -genus Planctomyces root:Engineered:Lab enrichment 1.0 genus Planctomyces root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Planctomyces root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Planctomyces root:Host-associated:Arthropoda 1.0 @@ -8914,13 +9050,13 @@ genus Thiobacillus root:Environmental:Aquatic:Marine:Sediment 3.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Thiobacillus root:Environmental:Aquatic:Sediment 8.0 genus Thiobacillus root:Environmental:Terrestrial:Soil:Wetlands 3.0 +genus Thiobacillus root:Host-associated:Plants:Rhizosphere:Soil 4.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater 3.0 genus Thiobacillus root:Environmental:Aquatic:Marine:Coastal 1.0 genus Thiobacillus root:Engineered:Lab enrichment:Defined media 1.0 genus Thiobacillus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Thiobacillus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -genus Thiobacillus root:Host-associated:Plants:Rhizosphere:Soil 4.0 genus Thiobacillus root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 genus Thiobacillus root:Engineered:Wastewater:Industrial wastewater 4.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -8936,7 +9072,7 @@ genus Thiobacillus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminate genus Thiobacillus root:Environmental 1.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Thiobacillus root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -genus Thiobacillus root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Thiobacillus root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 genus Thiobacillus root:Engineered:Bioremediation 1.0 genus Thiobacillus root:Engineered:Biotransformation 1.0 genus Thiobacillus root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 @@ -9007,68 +9143,74 @@ phylum Candidatus Nomurabacteria root:Environmental:Aquatic:Estuary 1.0 phylum Candidatus Nomurabacteria root:Engineered:Wastewater:Industrial wastewater 1.0 phylum Candidatus Nomurabacteria root:Host-associated:Insecta:Digestive system 1.0 phylum Candidatus Nomurabacteria root:Environmental:Terrestrial:Soil:Clay 1.0 -phylum Candidatus Nomurabacteria root:Engineered:Wastewater:Water and sludge 2.0 +phylum Candidatus Nomurabacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +phylum Candidatus Nomurabacteria root:Engineered:Wastewater:Water and sludge 3.0 phylum Candidatus Nomurabacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 +phylum Candidatus Nomurabacteria root:Host-associated:Insecta 1.0 phylum Candidatus Nomurabacteria root:Environmental:Terrestrial:Soil:Loam 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lake 20.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Pond 1.0 -class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 24.0 +class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 25.0 class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 29.0 class Deltaproteobacteria root:Host-associated:Birds:Digestive system:Fecal 8.0 class Deltaproteobacteria root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 4.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -class Deltaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 88.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine 246.0 +class Deltaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 93.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine 249.0 class Deltaproteobacteria root:Host-associated:Fish 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 20.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 54.0 -class Deltaproteobacteria root:Host-associated:Mammals:Digestive system 13.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic 56.0 +class Deltaproteobacteria root:Host-associated:Mammals:Digestive system 14.0 class Deltaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 16.0 class Deltaproteobacteria root:Environmental:Terrestrial:Geologic 3.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Forest soil 23.0 class Deltaproteobacteria root:Environmental:Aquatic:Lentic:Brackish 3.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 14.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 15.0 class Deltaproteobacteria root:Host-associated:Human 4.0 class Deltaproteobacteria root:Host-associated:Plants 19.0 class Deltaproteobacteria root:Environmental:Aquatic:Estuary:Sediment 15.0 -class Deltaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 9.0 +class Deltaproteobacteria root:Host-associated:Human:Digestive system:Large intestine 10.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Agricultural 38.0 class Deltaproteobacteria root:Engineered:Bioreactor 38.0 -class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 +class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 28.0 -class Deltaproteobacteria root:Engineered:Wastewater:Activated Sludge 63.0 +class Deltaproteobacteria root:Engineered:Wastewater:Activated Sludge 64.0 class Deltaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 class Deltaproteobacteria root:Host-associated:Human:Skin 3.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Permafrost 11.0 -class Deltaproteobacteria root:Mixed 19.0 -class Deltaproteobacteria root:Host-associated:Mammals 3.0 +class Deltaproteobacteria root:Mixed 21.0 +class Deltaproteobacteria root:Host-associated:Mammals 4.0 class Deltaproteobacteria root:Host-associated:Amphibia 2.0 class Deltaproteobacteria root:Engineered:Food production:Fermented beverages 1.0 class Deltaproteobacteria root:Engineered:Wastewater 14.0 class Deltaproteobacteria root:Host-associated:Human:Reproductive system:Vagina 1.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 16.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 19.0 class Deltaproteobacteria root:Host-associated:Human:Digestive system:Oral 2.0 class Deltaproteobacteria root:Engineered:Food production:Dairy products 5.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Contaminated 10.0 class Deltaproteobacteria root:Host-associated:Plants:Phylloplane 5.0 -class Deltaproteobacteria root:Host-associated:Plants:Rhizosphere 51.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 30.0 +class Deltaproteobacteria root:Host-associated:Plants:Rhizosphere 53.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 31.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -class Deltaproteobacteria root:Environmental:Terrestrial:Soil 179.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Sediment 146.0 -class Deltaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +class Deltaproteobacteria root:Environmental:Terrestrial:Soil 181.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Sediment 149.0 +class Deltaproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +class Deltaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Sediment 24.0 class Deltaproteobacteria root:Environmental:Aquatic 12.0 +class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Deltaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Deltaproteobacteria root:Engineered:Biogas plant:Wet fermentation 4.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Tropical rainforest 7.0 class Deltaproteobacteria root:Host-associated:Porifera 18.0 +class Deltaproteobacteria root:Engineered:Lab enrichment 7.0 class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Wetlands 9.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Grasslands 14.0 class Deltaproteobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 class Deltaproteobacteria root:Host-associated:Birds:Digestive system:Ceca 3.0 +class Deltaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 19.0 class Deltaproteobacteria root:Host-associated:Human:Digestive system 11.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater 7.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 8.0 @@ -9080,10 +9222,10 @@ class Deltaproteobacteria root:Engineered:Solid waste:Composting 8.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water 1.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Desert 10.0 class Deltaproteobacteria root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 29.0 +class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 30.0 class Deltaproteobacteria root:Host-associated:Algae:Red algae 2.0 class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -class Deltaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +class Deltaproteobacteria root:Host-associated:Arthropoda:Digestive system:Gut 2.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 12.0 class Deltaproteobacteria root:Engineered:Lab enrichment:Defined media 10.0 class Deltaproteobacteria root:Host-associated:Plants:Root 5.0 @@ -9093,8 +9235,8 @@ class Deltaproteobacteria root:Environmental:Terrestrial:Deep subsurface 2.0 class Deltaproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 class Deltaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 21.0 -class Deltaproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 19.0 class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 6.0 +class Deltaproteobacteria root:Engineered:Food production:Fermented seafood 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 6.0 class Deltaproteobacteria root:Environmental:Aquatic:Estuary 24.0 @@ -9109,7 +9251,6 @@ class Deltaproteobacteria root:Host-associated:Insecta:Digestive system 4.0 class Deltaproteobacteria root:Host-associated 5.0 class Deltaproteobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class Deltaproteobacteria root:Host-associated:Mollusca 5.0 -class Deltaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Deltaproteobacteria root:Host-associated:Fish:Digestive system 1.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Mine 1.0 class Deltaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 @@ -9123,16 +9264,17 @@ class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Drinking water:D class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 class Deltaproteobacteria root:Engineered:Solid waste 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 class Deltaproteobacteria root:Environmental:Aquatic:Thermal springs:Sediment 5.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 7.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Photic zone 3.0 -class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 12.0 +class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 13.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -class Deltaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +class Deltaproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 6.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Pelagic 7.0 -class Deltaproteobacteria root:Engineered:Wastewater:Water and sludge 11.0 -class Deltaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Deltaproteobacteria root:Engineered:Wastewater:Water and sludge 12.0 +class Deltaproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +class Deltaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 class Deltaproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone 3.0 class Deltaproteobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -9141,7 +9283,6 @@ class Deltaproteobacteria root:Host-associated:Mammals:Gastrointestinal tract 2. class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 11.0 class Deltaproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -class Deltaproteobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Crop 2.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Deltaproteobacteria root:Host-associated:Fish:Digestive system:Intestine 3.0 @@ -9149,7 +9290,6 @@ class Deltaproteobacteria root:Host-associated:Insecta 3.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Deltaproteobacteria root:Engineered:Built environment 1.0 class Deltaproteobacteria root:Host-associated:Birds:Digestive system 2.0 -class Deltaproteobacteria root:Engineered:Lab enrichment 7.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Boreal forest 1.0 class Deltaproteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 class Deltaproteobacteria root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -9178,12 +9318,12 @@ class Deltaproteobacteria root:Engineered:Industrial production 1.0 class Deltaproteobacteria root:Host-associated:Fish:Skin 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 5.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Deltaproteobacteria root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Deltaproteobacteria root:Host-associated:Arthropoda 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 +class Deltaproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 5.0 class Deltaproteobacteria root:Engineered:Bioremediation 2.0 class Deltaproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 2.0 @@ -9191,7 +9331,7 @@ class Deltaproteobacteria root:Engineered:Bioremediation:Hydrocarbon 1.0 class Deltaproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 class Deltaproteobacteria root:Engineered:Biotransformation 1.0 class Deltaproteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Deltaproteobacteria root:Host-associated:Mammals:Skin 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 class Deltaproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 @@ -9215,6 +9355,7 @@ class Deltaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological class Deltaproteobacteria root:Engineered:Solid waste:Composting:Bioreactor 1.0 class Deltaproteobacteria root 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 +class Deltaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Deltaproteobacteria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class Deltaproteobacteria root:Host-associated:Microbial 1.0 class Deltaproteobacteria root:Host-associated:Mammals:Excretory system 1.0 @@ -9227,25 +9368,26 @@ class Deltaproteobacteria root:Environmental:Aquatic:Thermal springs:Near-boilin class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Deltaproteobacteria root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 class Deltaproteobacteria root:Host-associated:Mammals:Milk 1.0 +class Deltaproteobacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Deltaproteobacteria root:Host-associated:Annelida 1.0 -class Deltaproteobacteria root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Deltaproteobacteria root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 class Deltaproteobacteria root:Host-associated:Spiralia 1.0 class Deltaproteobacteria root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Lake 5.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Sediment 5.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -class Phycisphaerae root:Environmental:Aquatic:Marine 49.0 +class Phycisphaerae root:Environmental:Aquatic:Marine 52.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 -class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic 14.0 +class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic 15.0 class Phycisphaerae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 class Phycisphaerae root:Environmental:Terrestrial:Soil:Forest soil 2.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 class Phycisphaerae root:Environmental:Aquatic:Estuary:Sediment 2.0 class Phycisphaerae root:Environmental:Terrestrial:Soil:Agricultural 1.0 class Phycisphaerae root:Engineered:Bioreactor 10.0 +class Phycisphaerae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 5.0 -class Phycisphaerae root:Engineered:Wastewater:Activated Sludge 10.0 +class Phycisphaerae root:Engineered:Wastewater:Activated Sludge 11.0 class Phycisphaerae root:Mixed 1.0 class Phycisphaerae root:Engineered:Wastewater 2.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 @@ -9253,10 +9395,11 @@ class Phycisphaerae root:Host-associated:Plants:Rhizosphere 3.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Coastal:Sediment 9.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Wetlands 1.0 class Phycisphaerae root:Environmental:Terrestrial:Soil 10.0 -class Phycisphaerae root:Environmental:Aquatic:Marine:Sediment 63.0 +class Phycisphaerae root:Environmental:Aquatic:Marine:Sediment 66.0 class Phycisphaerae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Phycisphaerae root:Environmental:Aquatic:Sediment 3.0 class Phycisphaerae root:Environmental:Aquatic 1.0 +class Phycisphaerae root:Engineered:Lab enrichment 1.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 4.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Coastal 7.0 @@ -9280,10 +9423,9 @@ class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4 class Phycisphaerae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 class Phycisphaerae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 class Phycisphaerae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Ice 1.0 -class Phycisphaerae root:Engineered:Lab enrichment 1.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Phycisphaerae root:Engineered:Biogas plant 1.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 @@ -9291,6 +9433,7 @@ class Phycisphaerae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hy class Phycisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Phycisphaerae root:Host-associated:Arthropoda 1.0 class Phycisphaerae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 +class Phycisphaerae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Phycisphaerae root:Engineered:Bioremediation:Hydrocarbon 1.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 class Phycisphaerae root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 @@ -9299,16 +9442,16 @@ class Phycisphaerae root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbi class Phycisphaerae root:Host-associated:Microbial 1.0 class Phycisphaerae root:Host-associated:Annelida:Digestive system 1.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Lake 10.0 -class Planctomycetia root:Environmental:Aquatic:Freshwater:Sediment 4.0 +class Planctomycetia root:Environmental:Aquatic:Freshwater:Sediment 5.0 class Planctomycetia root:Host-associated:Mammals:Digestive system:Fecal 1.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -class Planctomycetia root:Environmental:Aquatic:Marine 79.0 +class Planctomycetia root:Environmental:Aquatic:Marine 81.0 class Planctomycetia root:Host-associated:Fish 2.0 class Planctomycetia root:Environmental:Aquatic:Marine:Oceanic:Sediment 7.0 -class Planctomycetia root:Environmental:Aquatic:Marine:Oceanic 20.0 +class Planctomycetia root:Environmental:Aquatic:Marine:Oceanic 21.0 class Planctomycetia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Forest soil 10.0 -class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 6.0 +class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 7.0 class Planctomycetia root:Host-associated:Human 2.0 class Planctomycetia root:Host-associated:Plants 7.0 class Planctomycetia root:Environmental:Aquatic:Estuary:Sediment 3.0 @@ -9325,20 +9468,22 @@ class Planctomycetia root:Host-associated:Amphibia 1.0 class Planctomycetia root:Engineered:Food production:Fermented beverages 1.0 class Planctomycetia root:Engineered:Wastewater 4.0 class Planctomycetia root:Host-associated:Human:Reproductive system:Vagina 1.0 -class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Contaminated 3.0 class Planctomycetia root:Host-associated:Plants:Rhizosphere 10.0 class Planctomycetia root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 -class Planctomycetia root:Environmental:Terrestrial:Soil 45.0 -class Planctomycetia root:Environmental:Aquatic:Marine:Sediment 41.0 +class Planctomycetia root:Environmental:Terrestrial:Soil 48.0 +class Planctomycetia root:Environmental:Aquatic:Marine:Sediment 42.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Lotic 2.0 class Planctomycetia root:Environmental:Aquatic:Sediment 2.0 class Planctomycetia root:Environmental:Aquatic 2.0 class Planctomycetia root:Engineered:Biogas plant:Wet fermentation 1.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 class Planctomycetia root:Host-associated:Porifera 2.0 +class Planctomycetia root:Engineered:Lab enrichment 1.0 class Planctomycetia root:Engineered:Lab Synthesis 1.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Grasslands 6.0 +class Planctomycetia root:Host-associated:Plants:Rhizosphere:Soil 6.0 class Planctomycetia root:Environmental:Aquatic:Freshwater 6.0 class Planctomycetia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 5.0 @@ -9348,6 +9493,7 @@ class Planctomycetia root:Engineered:Solid waste:Composting 5.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Drinking water 4.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Desert 2.0 class Planctomycetia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +class Planctomycetia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Planctomycetia root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class Planctomycetia root:Engineered:Lab enrichment:Defined media 9.0 class Planctomycetia root:Host-associated:Plants:Root 3.0 @@ -9355,7 +9501,6 @@ class Planctomycetia root:Environmental:Aquatic:Marine:Oil-contaminated sediment class Planctomycetia root:Environmental:Terrestrial:Deep subsurface 2.0 class Planctomycetia root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Planctomycetia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -class Planctomycetia root:Host-associated:Plants:Rhizosphere:Soil 6.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Planctomycetia root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 class Planctomycetia root:Environmental:Aquatic:Estuary 2.0 @@ -9366,6 +9511,7 @@ class Planctomycetia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Planctomycetia root:Engineered:Wastewater:Industrial wastewater 1.0 class Planctomycetia root:Host-associated 2.0 class Planctomycetia root:Host-associated:Mollusca 1.0 +class Planctomycetia root:Host-associated:Fish:Digestive system 1.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Sand 2.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -9381,6 +9527,7 @@ class Planctomycetia root:Environmental:Aquatic:Marine:Marginal Sea 4.0 class Planctomycetia root:Environmental:Aquatic:Marine:Pelagic 2.0 class Planctomycetia root:Engineered:Wastewater:Water and sludge 1.0 class Planctomycetia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Planctomycetia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Planctomycetia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 @@ -9390,10 +9537,10 @@ class Planctomycetia root:Environmental:Terrestrial:Soil:Crop 1.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Planctomycetia root:Host-associated:Fish:Digestive system:Intestine 1.0 class Planctomycetia root:Host-associated:Insecta 2.0 +class Planctomycetia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Planctomycetia root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Planctomycetia root:Engineered:Built environment 2.0 class Planctomycetia root:Host-associated:Birds:Digestive system 1.0 -class Planctomycetia root:Engineered:Lab enrichment 1.0 class Planctomycetia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 class Planctomycetia root:Environmental 1.0 @@ -9402,6 +9549,7 @@ class Planctomycetia root:Engineered 2.0 class Planctomycetia root:Host-associated:Fish:Skin 1.0 class Planctomycetia root:Host-associated:Arthropoda 2.0 class Planctomycetia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 +class Planctomycetia root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Planctomycetia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Planctomycetia root:Environmental:Terrestrial:Soil:Uranium contaminated 2.0 class Planctomycetia root:Engineered:Biotransformation 2.0 @@ -9420,7 +9568,7 @@ class Planctomycetia root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Planctomycetia root:Host-associated:Invertebrates:Cnidaria 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lake 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Sediment 7.0 -class Gemmatimonadetes root:Environmental:Aquatic:Marine 37.0 +class Gemmatimonadetes root:Environmental:Aquatic:Marine 38.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic 8.0 class Gemmatimonadetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -9439,14 +9587,15 @@ class Gemmatimonadetes root:Host-associated:Mammals 1.0 class Gemmatimonadetes root:Engineered:Wastewater 2.0 class Gemmatimonadetes root:Environmental:Terrestrial:Soil:Contaminated 7.0 class Gemmatimonadetes root:Host-associated:Plants:Rhizosphere 22.0 -class Gemmatimonadetes root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 +class Gemmatimonadetes root:Environmental:Aquatic:Marine:Coastal:Sediment 12.0 class Gemmatimonadetes root:Environmental:Terrestrial:Soil 44.0 -class Gemmatimonadetes root:Environmental:Aquatic:Marine:Sediment 39.0 +class Gemmatimonadetes root:Environmental:Aquatic:Marine:Sediment 40.0 class Gemmatimonadetes root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 class Gemmatimonadetes root:Environmental:Aquatic:Sediment 4.0 class Gemmatimonadetes root:Environmental:Aquatic 4.0 class Gemmatimonadetes root:Host-associated:Porifera 9.0 class Gemmatimonadetes root:Environmental:Terrestrial:Soil:Grasslands 3.0 +class Gemmatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 10.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -9460,7 +9609,6 @@ class Gemmatimonadetes root:Engineered:Lab enrichment:Defined media 1.0 class Gemmatimonadetes root:Host-associated:Plants:Root 2.0 class Gemmatimonadetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Gemmatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 9.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 class Gemmatimonadetes root:Environmental:Aquatic:Estuary 1.0 @@ -9476,14 +9624,15 @@ class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Marginal Sea 2.0 class Gemmatimonadetes root:Engineered:Wastewater:Water and sludge 1.0 -class Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 class Gemmatimonadetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Gemmatimonadetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 class Gemmatimonadetes root:Environmental:Terrestrial:Soil:Crop 2.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 class Gemmatimonadetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 class Gemmatimonadetes root:Environmental 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 +class Gemmatimonadetes root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 class Gemmatimonadetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 class Gemmatimonadetes root:Engineered:Bioremediation 1.0 @@ -9493,9 +9642,9 @@ class Gemmatimonadetes root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1 class Gemmatimonadetes root:Environmental:Terrestrial:Soil:Mine drainage 1.0 class Gemmatimonadetes root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 class Gemmatimonadetes root 1.0 +class Gemmatimonadetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 class Gemmatimonadetes root:Environmental:Aquatic:Marine:Volcanic 1.0 class Gemmatimonadetes root:Host-associated:Annelida:Digestive system 1.0 -class Gemmatimonadetes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Solibacteres root:Environmental:Aquatic:Freshwater:Lake 2.0 class Solibacteres root:Environmental:Aquatic:Freshwater:Sediment 2.0 class Solibacteres root:Environmental:Aquatic:Marine 2.0 @@ -9514,15 +9663,16 @@ class Solibacteres root:Engineered:Modeled:Simulated communities (microbial mixt class Solibacteres root:Environmental:Aquatic:Sediment 1.0 class Solibacteres root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 class Solibacteres root:Host-associated:Porifera 9.0 +class Solibacteres root:Engineered:Lab enrichment 1.0 class Solibacteres root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Solibacteres root:Environmental:Terrestrial:Soil:Grasslands 3.0 +class Solibacteres root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Solibacteres root:Environmental:Aquatic:Freshwater 1.0 class Solibacteres root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 class Solibacteres root:Environmental:Aquatic:Marine:Coastal 1.0 class Solibacteres root:Environmental:Terrestrial:Soil:Desert 1.0 class Solibacteres root:Host-associated:Plants:Root 2.0 class Solibacteres root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -class Solibacteres root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Solibacteres root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Solibacteres root:Engineered:Wastewater:Industrial wastewater 1.0 class Solibacteres root:Host-associated:Insecta:Digestive system 1.0 @@ -9530,7 +9680,6 @@ class Solibacteres root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 class Solibacteres root:Environmental:Aquatic:Marine:Brackish 1.0 class Solibacteres root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class Solibacteres root:Environmental:Aquatic:Thermal springs:Sediment 1.0 -class Solibacteres root:Engineered:Lab enrichment 1.0 class Solibacteres root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 class Solibacteres root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Solibacteres root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 @@ -9538,6 +9687,7 @@ class Solibacteres root:Environmental:Terrestrial:Volcanic 1.0 class Solibacteres root:Host-associated:Protozoa 1.0 class Saprospiria root:Environmental:Aquatic:Freshwater:Lake 2.0 class Saprospiria root:Environmental:Aquatic:Freshwater:Pond 1.0 +class Saprospiria root:Environmental:Aquatic:Freshwater:Sediment 1.0 class Saprospiria root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Saprospiria root:Environmental:Aquatic:Marine 58.0 class Saprospiria root:Host-associated:Fish 1.0 @@ -9572,8 +9722,9 @@ class Saprospiria root:Environmental:Aquatic:Marine:Brackish 4.0 class Saprospiria root:Host-associated:Fish:Digestive system:Foregut 1.0 class Saprospiria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 class Saprospiria root:Environmental:Aquatic:Marine:Pelagic 7.0 -class Saprospiria root:Engineered:Wastewater:Water and sludge 3.0 +class Saprospiria root:Engineered:Wastewater:Water and sludge 4.0 class Saprospiria root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Saprospiria root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Saprospiria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 class Saprospiria root:Host-associated:Fish:Digestive system:Intestine 1.0 class Saprospiria root:Host-associated:Insecta 1.0 @@ -9607,7 +9758,7 @@ order Phycisphaerales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary order Phycisphaerales root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 order Phycisphaerales root:Environmental:Aquatic:Freshwater:Wetlands 1.0 order Phycisphaerales root:Environmental:Terrestrial:Soil 1.0 -order Phycisphaerales root:Environmental:Aquatic:Marine:Sediment 27.0 +order Phycisphaerales root:Environmental:Aquatic:Marine:Sediment 28.0 order Phycisphaerales root:Environmental:Aquatic:Sediment 2.0 order Phycisphaerales root:Environmental:Aquatic 1.0 order Phycisphaerales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -9650,26 +9801,28 @@ order Myxococcales root:Environmental:Terrestrial:Soil:Agricultural 19.0 order Myxococcales root:Engineered:Bioreactor 7.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 -order Myxococcales root:Engineered:Wastewater:Activated Sludge 15.0 +order Myxococcales root:Engineered:Wastewater:Activated Sludge 16.0 order Myxococcales root:Environmental:Terrestrial:Soil:Permafrost 3.0 order Myxococcales root:Mixed 10.0 order Myxococcales root:Host-associated:Amphibia 1.0 order Myxococcales root:Engineered:Wastewater 6.0 -order Myxococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +order Myxococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 order Myxococcales root:Host-associated:Human:Digestive system:Oral 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Contaminated 5.0 order Myxococcales root:Host-associated:Plants:Phylloplane 2.0 -order Myxococcales root:Host-associated:Plants:Rhizosphere 28.0 +order Myxococcales root:Host-associated:Plants:Rhizosphere 30.0 order Myxococcales root:Environmental:Aquatic:Marine:Coastal:Sediment 14.0 -order Myxococcales root:Environmental:Terrestrial:Soil 70.0 +order Myxococcales root:Environmental:Terrestrial:Soil 72.0 order Myxococcales root:Environmental:Aquatic:Marine:Sediment 55.0 order Myxococcales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Myxococcales root:Environmental:Aquatic:Sediment 7.0 order Myxococcales root:Environmental:Aquatic 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Tropical rainforest 5.0 order Myxococcales root:Host-associated:Porifera 8.0 +order Myxococcales root:Engineered:Lab enrichment 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Grasslands 7.0 +order Myxococcales root:Host-associated:Plants:Rhizosphere:Soil 11.0 order Myxococcales root:Environmental:Aquatic:Freshwater 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 order Myxococcales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -9681,7 +9834,6 @@ order Myxococcales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Myxococcales root:Engineered:Lab enrichment:Defined media 3.0 order Myxococcales root:Host-associated:Plants:Root 3.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -order Myxococcales root:Host-associated:Plants:Rhizosphere:Soil 11.0 order Myxococcales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 order Myxococcales root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 order Myxococcales root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -9699,31 +9851,32 @@ order Myxococcales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1. order Myxococcales root:Engineered:Solid waste 1.0 order Myxococcales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 +order Myxococcales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 order Myxococcales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Myxococcales root:Engineered:Wastewater:Water and sludge 3.0 +order Myxococcales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Myxococcales root:Host-associated:Invertebrates:Echinodermata 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 -order Myxococcales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Crop 1.0 -order Myxococcales root:Engineered:Lab enrichment 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 order Myxococcales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Myxococcales root:Environmental 2.0 +order Myxococcales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Storm water 1.0 order Myxococcales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 5.0 -order Myxococcales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +order Myxococcales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Myxococcales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order Myxococcales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 order Myxococcales root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 order Myxococcales root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 +order Myxococcales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 order Myxococcales root:Environmental:Aquatic:Marine:Volcanic 1.0 order Myxococcales root:Host-associated:Annelida:Digestive system 1.0 order Myxococcales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 -order Myxococcales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Sediment 3.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 @@ -9747,7 +9900,7 @@ order Planctomycetales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary order Planctomycetales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Planctomycetales root:Host-associated:Plants:Rhizosphere 7.0 order Planctomycetales root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 -order Planctomycetales root:Environmental:Terrestrial:Soil 20.0 +order Planctomycetales root:Environmental:Terrestrial:Soil 21.0 order Planctomycetales root:Environmental:Aquatic:Marine:Sediment 29.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Planctomycetales root:Environmental:Aquatic:Sediment 1.0 @@ -9755,6 +9908,7 @@ order Planctomycetales root:Environmental:Aquatic 1.0 order Planctomycetales root:Engineered:Biogas plant:Wet fermentation 1.0 order Planctomycetales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 order Planctomycetales root:Host-associated:Porifera 3.0 +order Planctomycetales root:Engineered:Lab enrichment 1.0 order Planctomycetales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Planctomycetales root:Environmental:Aquatic:Freshwater 1.0 order Planctomycetales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -9763,6 +9917,7 @@ order Planctomycetales root:Environmental:Aquatic:Marine:Coastal 9.0 order Planctomycetales root:Engineered:Solid waste:Composting 3.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Drinking water 2.0 order Planctomycetales root:Environmental:Terrestrial:Soil:Desert 1.0 +order Planctomycetales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Planctomycetales root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order Planctomycetales root:Engineered:Lab enrichment:Defined media 8.0 order Planctomycetales root:Host-associated:Plants:Root 1.0 @@ -9788,7 +9943,6 @@ order Planctomycetales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 order Planctomycetales root:Host-associated:Insecta 2.0 order Planctomycetales root:Engineered:Built environment 2.0 order Planctomycetales root:Host-associated:Birds:Digestive system 1.0 -order Planctomycetales root:Engineered:Lab enrichment 1.0 order Planctomycetales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Planctomycetales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Planctomycetales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -9824,7 +9978,7 @@ order Gemmatimonadales root:Engineered:Wastewater 2.0 order Gemmatimonadales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 order Gemmatimonadales root:Environmental:Terrestrial:Soil:Contaminated 3.0 order Gemmatimonadales root:Host-associated:Plants:Rhizosphere 20.0 -order Gemmatimonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +order Gemmatimonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Gemmatimonadales root:Environmental:Terrestrial:Soil 25.0 order Gemmatimonadales root:Environmental:Aquatic:Marine:Sediment 9.0 order Gemmatimonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -9849,7 +10003,7 @@ order Gemmatimonadales root:Environmental:Terrestrial:Soil:Mine 1.0 order Gemmatimonadales root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 order Gemmatimonadales root:Environmental:Terrestrial:Soil:Clay 1.0 order Gemmatimonadales root:Engineered:Bioreactor:Continuous culture 1.0 -order Gemmatimonadales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +order Gemmatimonadales root:Environmental:Aquatic:Freshwater:Groundwater 2.0 order Gemmatimonadales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Gemmatimonadales root:Environmental:Terrestrial:Soil:Crop 2.0 order Gemmatimonadales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -9860,15 +10014,16 @@ order Gemmatimonadales root:Engineered:Bioremediation 1.0 order Gemmatimonadales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 order Gemmatimonadales root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 order Gemmatimonadales root 1.0 +order Gemmatimonadales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Gemmatimonadales root:Host-associated:Microbial 1.0 order Gemmatimonadales root:Host-associated:Annelida:Digestive system 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Lake 10.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Rhodospirillales root:Host-associated:Mammals:Digestive system:Fecal 14.0 -order Rhodospirillales root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -order Rhodospirillales root:Environmental:Aquatic:Marine 90.0 +order Rhodospirillales root:Host-associated:Mammals:Digestive system:Fecal 15.0 +order Rhodospirillales root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 +order Rhodospirillales root:Environmental:Aquatic:Marine 97.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -order Rhodospirillales root:Environmental:Aquatic:Marine:Oceanic 32.0 +order Rhodospirillales root:Environmental:Aquatic:Marine:Oceanic 33.0 order Rhodospirillales root:Host-associated:Mammals:Digestive system 6.0 order Rhodospirillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Forest soil 16.0 @@ -9878,34 +10033,38 @@ order Rhodospirillales root:Host-associated:Human 4.0 order Rhodospirillales root:Host-associated:Plants 14.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Agricultural 19.0 order Rhodospirillales root:Engineered:Bioreactor 15.0 +order Rhodospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 order Rhodospirillales root:Engineered:Wastewater:Activated Sludge 1.0 order Rhodospirillales root:Host-associated:Human:Skin 6.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Permafrost 5.0 order Rhodospirillales root:Mixed 11.0 -order Rhodospirillales root:Host-associated:Mammals 3.0 +order Rhodospirillales root:Host-associated:Mammals 4.0 order Rhodospirillales root:Host-associated:Amphibia 1.0 order Rhodospirillales root:Engineered:Food production:Fermented beverages 7.0 order Rhodospirillales root:Engineered:Wastewater 5.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 order Rhodospirillales root:Host-associated:Human:Digestive system:Oral 1.0 -order Rhodospirillales root:Engineered:Food production:Dairy products 2.0 +order Rhodospirillales root:Engineered:Food production:Dairy products 3.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Contaminated 9.0 order Rhodospirillales root:Host-associated:Plants:Phylloplane 4.0 -order Rhodospirillales root:Host-associated:Plants:Rhizosphere 12.0 +order Rhodospirillales root:Host-associated:Plants:Rhizosphere 13.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -order Rhodospirillales root:Environmental:Terrestrial:Soil 111.0 -order Rhodospirillales root:Environmental:Aquatic:Marine:Sediment 14.0 +order Rhodospirillales root:Environmental:Terrestrial:Soil 112.0 +order Rhodospirillales root:Environmental:Aquatic:Marine:Sediment 15.0 order Rhodospirillales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Rhodospirillales root:Environmental:Aquatic:Sediment 3.0 order Rhodospirillales root:Environmental:Aquatic 1.0 +order Rhodospirillales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Tropical rainforest 8.0 order Rhodospirillales root:Host-associated:Porifera 8.0 -order Rhodospirillales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +order Rhodospirillales root:Engineered:Lab enrichment 1.0 +order Rhodospirillales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Grasslands 7.0 +order Rhodospirillales root:Host-associated:Plants:Rhizosphere:Soil 14.0 order Rhodospirillales root:Host-associated:Human:Digestive system 1.0 -order Rhodospirillales root:Environmental:Aquatic:Freshwater 6.0 +order Rhodospirillales root:Environmental:Aquatic:Freshwater 7.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 order Rhodospirillales root:Environmental:Aquatic:Thermal springs 1.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 10.0 @@ -9914,14 +10073,13 @@ order Rhodospirillales root:Engineered:Solid waste:Composting 3.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Drinking water 1.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Desert 9.0 order Rhodospirillales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 -order Rhodospirillales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +order Rhodospirillales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 order Rhodospirillales root:Engineered:Lab enrichment:Defined media 9.0 order Rhodospirillales root:Host-associated:Plants:Root 2.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 order Rhodospirillales root:Engineered:Food production 3.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -order Rhodospirillales root:Host-associated:Plants:Rhizosphere:Soil 13.0 order Rhodospirillales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 order Rhodospirillales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 4.0 @@ -9931,7 +10089,7 @@ order Rhodospirillales root:Host-associated:Animal:Digestive system 2.0 order Rhodospirillales root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Rhodospirillales root:Engineered:Wastewater:Industrial wastewater 3.0 -order Rhodospirillales root:Host-associated:Insecta:Digestive system 3.0 +order Rhodospirillales root:Host-associated:Insecta:Digestive system 4.0 order Rhodospirillales root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 order Rhodospirillales root:Host-associated:Fish:Digestive system 1.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Sand 3.0 @@ -9950,15 +10108,14 @@ order Rhodospirillales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Pelagic 4.0 order Rhodospirillales root:Engineered:Wastewater:Water and sludge 3.0 order Rhodospirillales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Rhodospirillales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Rhodospirillales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 2.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 -order Rhodospirillales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Ice 2.0 order Rhodospirillales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -order Rhodospirillales root:Host-associated:Insecta 3.0 -order Rhodospirillales root:Engineered:Built environment 3.0 -order Rhodospirillales root:Engineered:Lab enrichment 1.0 +order Rhodospirillales root:Host-associated:Insecta 4.0 +order Rhodospirillales root:Engineered:Built environment 4.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Rhodospirillales root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -9972,6 +10129,7 @@ order Rhodospirillales root:Engineered 2.0 order Rhodospirillales root:Host-associated:Plants:Rhizome 1.0 order Rhodospirillales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 +order Rhodospirillales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Rhodospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 order Rhodospirillales root:Host-associated:Arthropoda 1.0 order Rhodospirillales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -10024,22 +10182,22 @@ order Solibacterales root:Environmental:Aquatic:Marine:Sediment 1.0 order Solibacterales root:Environmental:Aquatic:Sediment 3.0 order Solibacterales root:Environmental:Terrestrial:Soil:Tropical rainforest 8.0 order Solibacterales root:Host-associated:Porifera 8.0 +order Solibacterales root:Engineered:Lab enrichment 1.0 order Solibacterales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Solibacterales root:Environmental:Terrestrial:Soil:Grasslands 4.0 +order Solibacterales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Solibacterales root:Environmental:Aquatic:Freshwater 1.0 order Solibacterales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 order Solibacterales root:Environmental:Aquatic:Marine:Coastal 2.0 order Solibacterales root:Environmental:Terrestrial:Soil:Desert 2.0 order Solibacterales root:Host-associated:Plants:Root 2.0 order Solibacterales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -order Solibacterales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Solibacterales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Solibacterales root:Host-associated:Insecta:Digestive system 1.0 order Solibacterales root:Environmental:Terrestrial:Soil:Mine 1.0 order Solibacterales root:Environmental:Aquatic:Marine:Brackish 1.0 order Solibacterales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 order Solibacterales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 -order Solibacterales root:Engineered:Lab enrichment 1.0 order Solibacterales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Solibacterales root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 order Solibacterales root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -10050,7 +10208,7 @@ order Saprospirales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Saprospirales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 order Saprospirales root:Environmental:Aquatic:Marine 38.0 order Saprospirales root:Host-associated:Fish 1.0 -order Saprospirales root:Environmental:Aquatic:Marine:Oceanic 6.0 +order Saprospirales root:Environmental:Aquatic:Marine:Oceanic 7.0 order Saprospirales root:Host-associated:Plants 2.0 order Saprospirales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Saprospirales root:Engineered:Bioreactor 2.0 @@ -10100,13 +10258,13 @@ order Cytophagales root:Environmental:Aquatic:Freshwater:Lake 8.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Pond 2.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Sediment 2.0 order Cytophagales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -order Cytophagales root:Environmental:Aquatic:Marine 44.0 +order Cytophagales root:Environmental:Aquatic:Marine 50.0 order Cytophagales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 order Cytophagales root:Environmental:Aquatic:Marine:Oceanic 23.0 order Cytophagales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 order Cytophagales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Cytophagales root:Environmental:Aquatic:Lentic:Brackish 5.0 -order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 order Cytophagales root:Host-associated:Plants 10.0 order Cytophagales root:Environmental:Aquatic:Estuary:Sediment 5.0 order Cytophagales root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -10119,18 +10277,20 @@ order Cytophagales root:Mixed 6.0 order Cytophagales root:Host-associated:Mammals 1.0 order Cytophagales root:Host-associated:Amphibia 1.0 order Cytophagales root:Engineered:Wastewater 5.0 -order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 39.0 +order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 40.0 order Cytophagales root:Host-associated:Human:Digestive system:Oral 1.0 order Cytophagales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Cytophagales root:Host-associated:Plants:Phylloplane 2.0 order Cytophagales root:Host-associated:Plants:Rhizosphere 8.0 order Cytophagales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 order Cytophagales root:Environmental:Terrestrial:Soil 27.0 -order Cytophagales root:Environmental:Aquatic:Marine:Sediment 24.0 +order Cytophagales root:Environmental:Aquatic:Marine:Sediment 25.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Cytophagales root:Environmental:Aquatic:Sediment 5.0 order Cytophagales root:Environmental:Aquatic 1.0 order Cytophagales root:Host-associated:Porifera 2.0 +order Cytophagales root:Engineered:Lab enrichment 1.0 +order Cytophagales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Cytophagales root:Environmental:Aquatic:Freshwater 4.0 order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 5.0 order Cytophagales root:Environmental:Aquatic:Marine:Coastal 6.0 @@ -10142,7 +10302,6 @@ order Cytophagales root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order Cytophagales root:Engineered:Lab enrichment:Defined media 1.0 order Cytophagales root:Host-associated:Plants:Root 2.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -order Cytophagales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Cytophagales root:Environmental:Aquatic:Estuary 21.0 order Cytophagales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -10162,19 +10321,18 @@ order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2. order Cytophagales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Groundwater 4.0 order Cytophagales root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -order Cytophagales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +order Cytophagales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 order Cytophagales root:Environmental:Aquatic:Marine:Pelagic 10.0 order Cytophagales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Cytophagales root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 order Cytophagales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Cytophagales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Cytophagales root:Host-associated:Reptile:Oral cavity 1.0 -order Cytophagales root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Ice 4.0 order Cytophagales root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Cytophagales root:Engineered:Built environment 2.0 -order Cytophagales root:Engineered:Lab enrichment 1.0 order Cytophagales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Cytophagales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Cytophagales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 @@ -10184,6 +10342,7 @@ order Cytophagales root:Engineered 2.0 order Cytophagales root:Environmental:Aquatic:Aquaculture 1.0 order Cytophagales root:Host-associated:Fish:Skin 1.0 order Cytophagales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 +order Cytophagales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Cytophagales root:Host-associated:Arthropoda 1.0 order Cytophagales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 order Cytophagales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 @@ -10198,15 +10357,15 @@ order Cytophagales root:Host-associated:Algae:Brown Algae 1.0 order Cytophagales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 order Cytophagales root:Host-associated:Microbial:Bacteria 1.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Lake 14.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Sediment 12.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Sediment 14.0 order Rhizobiales root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Rhizobiales root:Host-associated:Birds:Digestive system:Fecal 1.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 order Rhizobiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -order Rhizobiales root:Environmental:Aquatic:Marine 49.0 +order Rhizobiales root:Environmental:Aquatic:Marine 64.0 order Rhizobiales root:Host-associated:Fish 3.0 order Rhizobiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 -order Rhizobiales root:Environmental:Aquatic:Marine:Oceanic 5.0 +order Rhizobiales root:Environmental:Aquatic:Marine:Oceanic 6.0 order Rhizobiales root:Host-associated:Mammals:Digestive system 2.0 order Rhizobiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 order Rhizobiales root:Environmental:Terrestrial:Geologic 3.0 @@ -10214,21 +10373,21 @@ order Rhizobiales root:Environmental:Terrestrial:Soil:Forest soil 25.0 order Rhizobiales root:Environmental:Aquatic:Lentic:Brackish 6.0 order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Rhizobiales root:Host-associated:Human 5.0 -order Rhizobiales root:Host-associated:Plants 30.0 +order Rhizobiales root:Host-associated:Plants 32.0 order Rhizobiales root:Environmental:Aquatic:Estuary:Sediment 6.0 order Rhizobiales root:Engineered:Food production:Silage fermentation 1.0 order Rhizobiales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Agricultural 47.0 order Rhizobiales root:Engineered:Bioreactor 55.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 9.0 -order Rhizobiales root:Engineered:Wastewater:Activated Sludge 35.0 +order Rhizobiales root:Engineered:Wastewater:Activated Sludge 36.0 order Rhizobiales root:Host-associated:Human:Skin 9.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Permafrost 14.0 -order Rhizobiales root:Mixed 18.0 +order Rhizobiales root:Mixed 19.0 order Rhizobiales root:Host-associated:Mammals 12.0 order Rhizobiales root:Host-associated:Amphibia 5.0 -order Rhizobiales root:Engineered:Food production:Fermented beverages 2.0 +order Rhizobiales root:Engineered:Food production:Fermented beverages 3.0 order Rhizobiales root:Engineered:Wastewater 13.0 order Rhizobiales root:Host-associated:Human:Reproductive system:Vagina 1.0 order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 @@ -10237,12 +10396,12 @@ order Rhizobiales root:Engineered:Food production:Dairy products 4.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Contaminated 13.0 order Rhizobiales root:Host-associated:Plants:Phylloplane 8.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Silt 1.0 -order Rhizobiales root:Host-associated:Plants:Rhizosphere 58.0 +order Rhizobiales root:Host-associated:Plants:Rhizosphere 60.0 order Rhizobiales root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -order Rhizobiales root:Environmental:Terrestrial:Soil 199.0 -order Rhizobiales root:Environmental:Aquatic:Marine:Sediment 48.0 -order Rhizobiales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +order Rhizobiales root:Environmental:Terrestrial:Soil 202.0 +order Rhizobiales root:Environmental:Aquatic:Marine:Sediment 49.0 +order Rhizobiales root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Lotic 4.0 order Rhizobiales root:Environmental:Aquatic:Sediment 10.0 order Rhizobiales root:Environmental:Aquatic 7.0 @@ -10250,11 +10409,13 @@ order Rhizobiales root:Engineered:Bioreactor:Continuous culture:Marine sediment order Rhizobiales root:Engineered:Biogas plant:Wet fermentation 2.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 order Rhizobiales root:Host-associated:Porifera 6.0 +order Rhizobiales root:Engineered:Lab enrichment 6.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Wetlands 8.0 order Rhizobiales root:Engineered:Lab Synthesis 1.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Grasslands 15.0 +order Rhizobiales root:Host-associated:Plants:Rhizosphere:Soil 27.0 order Rhizobiales root:Host-associated:Human:Digestive system 5.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater 7.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater 8.0 order Rhizobiales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 order Rhizobiales root:Environmental:Aquatic:Thermal springs 1.0 order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 6.0 @@ -10272,7 +10433,6 @@ order Rhizobiales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1. order Rhizobiales root:Engineered:Food production 2.0 order Rhizobiales root:Environmental:Terrestrial:Deep subsurface 4.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 11.0 -order Rhizobiales root:Host-associated:Plants:Rhizosphere:Soil 26.0 order Rhizobiales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 order Rhizobiales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 order Rhizobiales root:Engineered:Food production:Fermented seafood 1.0 @@ -10284,7 +10444,7 @@ order Rhizobiales root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Oil-contaminated 4.0 order Rhizobiales root:Engineered:Wastewater:Industrial wastewater 14.0 order Rhizobiales root:Engineered:Modeled 1.0 -order Rhizobiales root:Host-associated:Insecta:Digestive system 5.0 +order Rhizobiales root:Host-associated:Insecta:Digestive system 6.0 order Rhizobiales root:Host-associated 5.0 order Rhizobiales root:Host-associated:Mollusca 2.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Mine 4.0 @@ -10296,13 +10456,14 @@ order Rhizobiales root:Host-associated:Fish:Digestive system:Foregut 2.0 order Rhizobiales root:Engineered:Bioreactor:Continuous culture 9.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 2.0 order Rhizobiales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 order Rhizobiales root:Environmental:Aquatic:Thermal springs:Sediment 3.0 order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater 9.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater 11.0 order Rhizobiales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Rhizobiales root:Engineered:Wastewater:Water and sludge 8.0 order Rhizobiales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Rhizobiales root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Rhizobiales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Rhizobiales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 @@ -10310,16 +10471,14 @@ order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainag order Rhizobiales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Rhizobiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Rhizobiales root:Host-associated:Reptile:Oral cavity 1.0 -order Rhizobiales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Ice 3.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Crop 3.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Loam:Forest soil 3.0 order Rhizobiales root:Host-associated:Fish:Digestive system:Intestine 2.0 order Rhizobiales root:Host-associated:Insecta 7.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Rhizobiales root:Engineered:Built environment 9.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 +order Rhizobiales root:Engineered:Built environment 10.0 order Rhizobiales root:Host-associated:Birds:Digestive system 1.0 -order Rhizobiales root:Engineered:Lab enrichment 6.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Rhizobiales root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 order Rhizobiales root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 @@ -10343,9 +10502,10 @@ order Rhizobiales root:Host-associated:Plants:Rhizome 1.0 order Rhizobiales root:Environmental:Aquatic:Aquaculture 1.0 order Rhizobiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +order Rhizobiales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Rhizobiales root:Environmental:Aquatic:Freshwater:Storm water 1.0 order Rhizobiales root:Host-associated:Arthropoda 2.0 -order Rhizobiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +order Rhizobiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 order Rhizobiales root:Host-associated:Fungi 1.0 order Rhizobiales root:Engineered:Bioremediation 2.0 order Rhizobiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 @@ -10354,6 +10514,7 @@ order Rhizobiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alka order Rhizobiales root:Engineered:Bioremediation:Hydrocarbon 1.0 order Rhizobiales root:Engineered:Biotransformation 3.0 order Rhizobiales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 +order Rhizobiales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Rhizobiales root:Host-associated:Mammals:Skin 2.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Mine drainage 1.0 order Rhizobiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 @@ -10365,6 +10526,7 @@ order Rhizobiales root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 2.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Loam 1.0 order Rhizobiales root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 order Rhizobiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 +order Rhizobiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 order Rhizobiales root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order Rhizobiales root:Host-associated:Protozoa 1.0 order Rhizobiales root:Engineered:Solid waste:Composting:Grass 1.0 @@ -10376,11 +10538,10 @@ order Rhizobiales root:Engineered:Wastewater:Industrial wastewater:Petrochemical order Rhizobiales root:Host-associated:Annelida:Digestive system 1.0 order Rhizobiales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 order Rhizobiales root:Environmental:Terrestrial:Agricultural field 1.0 -order Rhizobiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Rhizobiales root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Sediment 9.0 -family Gemmatimonadaceae root:Environmental:Aquatic:Marine 24.0 +family Gemmatimonadaceae root:Environmental:Aquatic:Marine 25.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Gemmatimonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -10394,17 +10555,18 @@ family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Permafrost 3.0 family Gemmatimonadaceae root:Mixed 5.0 family Gemmatimonadaceae root:Host-associated:Mammals 1.0 family Gemmatimonadaceae root:Engineered:Wastewater 2.0 -family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 13.0 +family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 14.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 family Gemmatimonadaceae root:Host-associated:Plants:Rhizosphere 12.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -family Gemmatimonadaceae root:Environmental:Terrestrial:Soil 33.0 +family Gemmatimonadaceae root:Environmental:Terrestrial:Soil 34.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Sediment 13.0 family Gemmatimonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Sediment 7.0 family Gemmatimonadaceae root:Environmental:Aquatic 3.0 family Gemmatimonadaceae root:Host-associated:Porifera 2.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Grasslands 4.0 +family Gemmatimonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater 2.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Gemmatimonadaceae root:Engineered:Solid waste:Composting 1.0 @@ -10415,7 +10577,6 @@ family Gemmatimonadaceae root:Engineered:Lab enrichment:Defined media 3.0 family Gemmatimonadaceae root:Host-associated:Plants:Root 1.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -family Gemmatimonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 family Gemmatimonadaceae root:Environmental:Aquatic:Estuary 5.0 family Gemmatimonadaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -10424,6 +10585,7 @@ family Gemmatimonadaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Clay 1.0 +family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Crop 2.0 @@ -10437,6 +10599,7 @@ family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminat family Gemmatimonadaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 family Gemmatimonadaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 family Gemmatimonadaceae root 1.0 +family Gemmatimonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Gemmatimonadaceae root:Host-associated:Annelida:Digestive system 1.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Lake 6.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 @@ -10457,18 +10620,20 @@ family Acetobacteraceae root:Host-associated:Mammals 1.0 family Acetobacteraceae root:Engineered:Food production:Fermented beverages 5.0 family Acetobacteraceae root:Engineered:Wastewater 2.0 family Acetobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Acetobacteraceae root:Engineered:Food production:Dairy products 1.0 family Acetobacteraceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Acetobacteraceae root:Host-associated:Plants:Phylloplane 4.0 family Acetobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 family Acetobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -family Acetobacteraceae root:Environmental:Terrestrial:Soil 25.0 +family Acetobacteraceae root:Environmental:Terrestrial:Soil 26.0 family Acetobacteraceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Acetobacteraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Acetobacteraceae root:Environmental:Aquatic:Sediment 1.0 family Acetobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 family Acetobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Acetobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 4.0 -family Acetobacteraceae root:Environmental:Aquatic:Freshwater 2.0 +family Acetobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 3.0 +family Acetobacteraceae root:Environmental:Aquatic:Freshwater 3.0 family Acetobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Acetobacteraceae root:Engineered:Solid waste:Composting 1.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 @@ -10478,11 +10643,10 @@ family Acetobacteraceae root:Engineered:Lab enrichment:Defined media 2.0 family Acetobacteraceae root:Host-associated:Plants:Root 1.0 family Acetobacteraceae root:Engineered:Food production 3.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Acetobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Acetobacteraceae root:Environmental:Aquatic:Estuary 1.0 family Acetobacteraceae root:Host-associated:Animal:Digestive system 1.0 family Acetobacteraceae root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 -family Acetobacteraceae root:Host-associated:Insecta:Digestive system 2.0 +family Acetobacteraceae root:Host-associated:Insecta:Digestive system 3.0 family Acetobacteraceae root:Host-associated 1.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 6.0 family Acetobacteraceae root:Host-associated:Human:Reproductive system:Female 1.0 @@ -10492,7 +10656,7 @@ family Acetobacteraceae root:Environmental:Terrestrial:Rock-dwelling (subaerial family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Acetobacteraceae root:Host-associated:Reptile:Oral cavity 1.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Ice 2.0 -family Acetobacteraceae root:Host-associated:Insecta 3.0 +family Acetobacteraceae root:Host-associated:Insecta 4.0 family Acetobacteraceae root:Engineered:Built environment 1.0 family Acetobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Acetobacteraceae root:Host-associated:Algae 1.0 @@ -10511,7 +10675,7 @@ family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 family Planctomycetaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Planctomycetaceae root:Environmental:Aquatic:Marine 27.0 +family Planctomycetaceae root:Environmental:Aquatic:Marine 28.0 family Planctomycetaceae root:Host-associated:Fish 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Oceanic 14.0 @@ -10535,7 +10699,9 @@ family Planctomycetaceae root:Environmental:Aquatic:Marine:Sediment 24.0 family Planctomycetaceae root:Environmental:Aquatic 1.0 family Planctomycetaceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Planctomycetaceae root:Host-associated:Porifera 3.0 +family Planctomycetaceae root:Engineered:Lab enrichment 1.0 family Planctomycetaceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 +family Planctomycetaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -10543,10 +10709,10 @@ family Planctomycetaceae root:Environmental:Aquatic:Marine:Coastal 13.0 family Planctomycetaceae root:Engineered:Solid waste:Composting 2.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 family Planctomycetaceae root:Environmental:Terrestrial:Soil:Desert 1.0 +family Planctomycetaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Planctomycetaceae root:Engineered:Lab enrichment:Defined media 8.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Planctomycetaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Planctomycetaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 family Planctomycetaceae root:Host-associated:Mollusca 1.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -10559,7 +10725,6 @@ family Planctomycetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-c family Planctomycetaceae root:Host-associated:Insecta 1.0 family Planctomycetaceae root:Engineered:Built environment 2.0 family Planctomycetaceae root:Host-associated:Birds:Digestive system 1.0 -family Planctomycetaceae root:Engineered:Lab enrichment 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 family Planctomycetaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 family Planctomycetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 @@ -10586,7 +10751,7 @@ family Phycisphaeraceae root:Mixed 1.0 family Phycisphaeraceae root:Engineered:Wastewater 2.0 family Phycisphaeraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Phycisphaeraceae root:Environmental:Terrestrial:Soil 2.0 -family Phycisphaeraceae root:Environmental:Aquatic:Marine:Sediment 20.0 +family Phycisphaeraceae root:Environmental:Aquatic:Marine:Sediment 21.0 family Phycisphaeraceae root:Environmental:Aquatic:Sediment 2.0 family Phycisphaeraceae root:Environmental:Aquatic 2.0 family Phycisphaeraceae root:Host-associated:Porifera 1.0 @@ -10601,6 +10766,7 @@ family Phycisphaeraceae root:Host-associated:Mollusca 1.0 family Phycisphaeraceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Phycisphaeraceae root:Engineered:Bioreactor:Continuous culture 1.0 family Phycisphaeraceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 +family Phycisphaeraceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Phycisphaeraceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Phycisphaeraceae root:Environmental:Aquatic:Marine:Pelagic 2.0 family Phycisphaeraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -10617,15 +10783,16 @@ family Bryobacteraceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Bryobacteraceae root:Host-associated:Plants 1.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Bryobacteraceae root:Mixed 3.0 +family Bryobacteraceae root:Host-associated:Plants:Rhizosphere 2.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil 14.0 family Bryobacteraceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Bryobacteraceae root:Environmental:Aquatic:Sediment 2.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Bryobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Bryobacteraceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Bryobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Bryobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Bryobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Bryobacteraceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 family Chthoniobacteraceae root:Environmental:Aquatic:Freshwater:Lake 4.0 @@ -10639,7 +10806,7 @@ family Chthoniobacteraceae root:Mixed 5.0 family Chthoniobacteraceae root:Engineered:Food production:Fermented beverages 1.0 family Chthoniobacteraceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Chthoniobacteraceae root:Host-associated:Plants:Rhizosphere 4.0 -family Chthoniobacteraceae root:Environmental:Terrestrial:Soil 30.0 +family Chthoniobacteraceae root:Environmental:Terrestrial:Soil 32.0 family Chthoniobacteraceae root:Environmental:Aquatic:Sediment 1.0 family Chthoniobacteraceae root:Environmental:Aquatic 1.0 family Chthoniobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 @@ -10662,7 +10829,7 @@ family Polyangiaceae root:Engineered:Wastewater:Activated Sludge 2.0 family Polyangiaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 family Polyangiaceae root:Engineered:Wastewater 1.0 family Polyangiaceae root:Host-associated:Plants:Rhizosphere 5.0 -family Polyangiaceae root:Environmental:Terrestrial:Soil 4.0 +family Polyangiaceae root:Environmental:Terrestrial:Soil 5.0 family Polyangiaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Polyangiaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Polyangiaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -10670,6 +10837,7 @@ family Leptolyngbyaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Leptolyngbyaceae root:Environmental:Aquatic:Marine 1.0 family Leptolyngbyaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Leptolyngbyaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Leptolyngbyaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Leptolyngbyaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Leptolyngbyaceae root:Environmental:Aquatic:Sediment 1.0 family Leptolyngbyaceae root:Environmental:Aquatic 1.0 @@ -10690,13 +10858,14 @@ genus Bryobacter root:Environmental:Terrestrial:Soil:Permafrost 4.0 genus Bryobacter root:Mixed 6.0 genus Bryobacter root:Host-associated:Amphibia 1.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 -genus Bryobacter root:Host-associated:Plants:Rhizosphere 10.0 -genus Bryobacter root:Environmental:Terrestrial:Soil 63.0 +genus Bryobacter root:Host-associated:Plants:Rhizosphere 12.0 +genus Bryobacter root:Environmental:Terrestrial:Soil 64.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Bryobacter root:Environmental:Aquatic:Sediment 5.0 genus Bryobacter root:Environmental:Aquatic 1.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Grasslands 5.0 +genus Bryobacter root:Host-associated:Plants:Rhizosphere:Soil 7.0 genus Bryobacter root:Environmental:Aquatic:Freshwater 1.0 genus Bryobacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Drinking water 1.0 @@ -10705,7 +10874,6 @@ genus Bryobacter root:Engineered:Lab enrichment:Defined media 1.0 genus Bryobacter root:Host-associated:Plants:Root 1.0 genus Bryobacter root:Environmental:Terrestrial:Deep subsurface 2.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -genus Bryobacter root:Host-associated:Plants:Rhizosphere:Soil 6.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Bryobacter root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -10725,6 +10893,7 @@ genus Bryobacter root:Engineered:Built environment 1.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Boreal forest 1.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Bryobacter root:Environmental 1.0 +genus Bryobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Bryobacter root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 genus Bryobacter root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Bryobacter root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 @@ -10739,7 +10908,7 @@ genus Chthoniobacter root:Mixed 3.0 genus Chthoniobacter root:Engineered:Food production:Fermented beverages 1.0 genus Chthoniobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Chthoniobacter root:Host-associated:Plants:Rhizosphere 3.0 -genus Chthoniobacter root:Environmental:Terrestrial:Soil 23.0 +genus Chthoniobacter root:Environmental:Terrestrial:Soil 25.0 genus Chthoniobacter root:Environmental:Aquatic:Sediment 1.0 genus Chthoniobacter root:Environmental:Terrestrial:Soil:Desert 1.0 genus Chthoniobacter root:Engineered:Wastewater:Water and sludge 1.0 @@ -10747,7 +10916,7 @@ genus Chthoniobacter root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 genus Chthoniobacter root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Gemmatimonas root:Environmental:Aquatic:Freshwater:Lake 6.0 genus Gemmatimonas root:Environmental:Aquatic:Freshwater:Sediment 2.0 -genus Gemmatimonas root:Environmental:Aquatic:Marine 24.0 +genus Gemmatimonas root:Environmental:Aquatic:Marine 25.0 genus Gemmatimonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Gemmatimonas root:Environmental:Aquatic:Marine:Oceanic 7.0 genus Gemmatimonas root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -10760,7 +10929,7 @@ genus Gemmatimonas root:Engineered:Wastewater:Activated Sludge 2.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Gemmatimonas root:Mixed 1.0 genus Gemmatimonas root:Engineered:Wastewater 2.0 -genus Gemmatimonas root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 27.0 +genus Gemmatimonas root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 28.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Gemmatimonas root:Host-associated:Plants:Rhizosphere 7.0 genus Gemmatimonas root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -10770,6 +10939,7 @@ genus Gemmatimonas root:Environmental:Aquatic:Sediment 1.0 genus Gemmatimonas root:Environmental:Aquatic 3.0 genus Gemmatimonas root:Host-associated:Porifera 2.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Wetlands 2.0 +genus Gemmatimonas root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Gemmatimonas root:Environmental:Aquatic:Freshwater 2.0 genus Gemmatimonas root:Environmental:Aquatic:Marine:Coastal 1.0 genus Gemmatimonas root:Engineered:Solid waste:Composting 1.0 @@ -10779,7 +10949,6 @@ genus Gemmatimonas root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Gemmatimonas root:Engineered:Lab enrichment:Defined media 3.0 genus Gemmatimonas root:Host-associated:Plants:Root 1.0 genus Gemmatimonas root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Gemmatimonas root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Gemmatimonas root:Environmental:Aquatic:Estuary 10.0 genus Gemmatimonas root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -10793,6 +10962,7 @@ genus Gemmatimonas root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Mine drainage 1.0 genus Gemmatimonas root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Gemmatimonas root 1.0 +genus Gemmatimonas root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Leptospira root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Leptospira root:Engineered:Bioreactor 1.0 genus Leptospira root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -10810,9 +10980,9 @@ genus Terrimonas root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 12.0 genus Terrimonas root:Host-associated:Plants:Rhizosphere 1.0 genus Terrimonas root:Environmental:Terrestrial:Soil 6.0 genus Terrimonas root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Terrimonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Terrimonas root:Engineered:Solid waste:Composting 1.0 genus Terrimonas root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Terrimonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Terrimonas root:Environmental:Aquatic:Estuary 4.0 genus Terrimonas root:Engineered:Wastewater:Industrial wastewater 1.0 genus Terrimonas root:Engineered:Wastewater:Water and sludge 2.0 @@ -10840,8 +11010,9 @@ genus Roseomonas root:Host-associated:Plants:Rhizosphere 1.0 genus Roseomonas root:Environmental:Terrestrial:Soil 16.0 genus Roseomonas root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 genus Roseomonas root:Environmental:Terrestrial:Soil:Wetlands 2.0 -genus Roseomonas root:Environmental:Aquatic:Marine:Coastal 1.0 genus Roseomonas root:Host-associated:Plants:Rhizosphere:Soil 2.0 +genus Roseomonas root:Environmental:Aquatic:Freshwater 1.0 +genus Roseomonas root:Environmental:Aquatic:Marine:Coastal 1.0 genus Roseomonas root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Roseomonas root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Roseomonas root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -10855,8 +11026,9 @@ genus Candidatus Kapabacteria root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Candidatus Kapabacteria root:Engineered:Bioreactor 1.0 genus Candidatus Kapabacteria root:Engineered:Wastewater 1.0 genus Nocardioides root:Environmental:Aquatic:Freshwater:Lake 1.0 +genus Nocardioides root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Nocardioides root:Host-associated:Mammals:Digestive system:Fecal 1.0 -genus Nocardioides root:Environmental:Aquatic:Marine 43.0 +genus Nocardioides root:Environmental:Aquatic:Marine 44.0 genus Nocardioides root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Nocardioides root:Environmental:Terrestrial:Geologic 1.0 genus Nocardioides root:Environmental:Terrestrial:Soil:Forest soil 4.0 @@ -10870,19 +11042,19 @@ genus Nocardioides root:Mixed 1.0 genus Nocardioides root:Host-associated:Mammals 3.0 genus Nocardioides root:Host-associated:Amphibia 1.0 genus Nocardioides root:Environmental:Terrestrial:Soil:Contaminated 1.0 -genus Nocardioides root:Host-associated:Plants:Rhizosphere 7.0 +genus Nocardioides root:Host-associated:Plants:Rhizosphere 8.0 genus Nocardioides root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Nocardioides root:Environmental:Terrestrial:Soil 10.0 +genus Nocardioides root:Environmental:Terrestrial:Soil 11.0 genus Nocardioides root:Environmental:Aquatic:Marine:Sediment 1.0 genus Nocardioides root:Environmental:Aquatic:Sediment 2.0 genus Nocardioides root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Nocardioides root:Host-associated:Mammals:Digestive system:Stomach 1.0 +genus Nocardioides root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Nocardioides root:Engineered:Solid waste:Composting 1.0 genus Nocardioides root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Nocardioides root:Engineered:Lab enrichment:Defined media 6.0 genus Nocardioides root:Host-associated:Plants:Root 2.0 genus Nocardioides root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -genus Nocardioides root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Nocardioides root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Nocardioides root:Host-associated:Mollusca 1.0 genus Nocardioides root:Environmental:Terrestrial:Soil:Crop 2.0 @@ -10922,6 +11094,7 @@ species Enhydrobacter aerosaccus root:Host-associated:Mammals 1.0 species Enhydrobacter aerosaccus root:Engineered:Biotransformation 1.0 species Ephemera danica root:Environmental:Aquatic:Freshwater:Lake 1.0 species Ephemera danica root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Ephemera danica root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Ephemera danica root:Environmental:Aquatic:Estuary:Sediment 1.0 species Ephemera danica root:Environmental:Aquatic:Marine:Sediment 1.0 species Ephemera danica root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -10933,6 +11106,7 @@ species Ephemera danica root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Ephemera danica root:Engineered 1.0 species Ephemera danica root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 species Nocardioides sp. JGI 0001009-J09 root:Environmental:Aquatic:Freshwater:Lake 1.0 +species Nocardioides sp. JGI 0001009-J09 root:Environmental:Terrestrial:Soil 1.0 species Nocardioides sp. JGI 0001009-J09 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Nocardioides sp. JGI 0001009-J09 root:Host-associated:Plants:Root 1.0 species Nocardioides sp. JGI 0001009-J09 root:Host-associated:Insecta:Digestive system 1.0 @@ -10940,15 +11114,15 @@ species Pajaroellobacter abortibovis root:Environmental:Aquatic:Freshwater:Lake species Paraurostyla sp. PUJRC G6 root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Lake 9.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Pond 3.0 -phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Sediment 14.0 +phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Sediment 15.0 phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Fecal 20.0 phylum Euryarchaeota root:Host-associated:Birds:Digestive system:Fecal 4.0 phylum Euryarchaeota root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 5.0 -phylum Euryarchaeota root:Host-associated:Human:Digestive system:Large intestine:Fecal 101.0 -phylum Euryarchaeota root:Environmental:Aquatic:Marine 192.0 +phylum Euryarchaeota root:Host-associated:Human:Digestive system:Large intestine:Fecal 105.0 +phylum Euryarchaeota root:Environmental:Aquatic:Marine 199.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oceanic 56.0 -phylum Euryarchaeota root:Host-associated:Mammals:Digestive system 14.0 +phylum Euryarchaeota root:Host-associated:Mammals:Digestive system 16.0 phylum Euryarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 7.0 phylum Euryarchaeota root:Environmental:Terrestrial:Geologic 1.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -10965,33 +11139,37 @@ phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 phylum Euryarchaeota root:Engineered:Wastewater:Activated Sludge 51.0 phylum Euryarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Permafrost 7.0 -phylum Euryarchaeota root:Mixed 6.0 +phylum Euryarchaeota root:Mixed 8.0 phylum Euryarchaeota root:Host-associated:Mammals 3.0 phylum Euryarchaeota root:Host-associated:Amphibia 1.0 phylum Euryarchaeota root:Host-associated:Human:Digestive system:Intestine 2.0 phylum Euryarchaeota root:Engineered:Food production:Fermented beverages 6.0 phylum Euryarchaeota root:Engineered:Wastewater 10.0 phylum Euryarchaeota root:Host-associated:Human:Reproductive system:Vagina 1.0 -phylum Euryarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 27.0 -phylum Euryarchaeota root:Host-associated:Human:Digestive system:Oral 3.0 +phylum Euryarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 29.0 +phylum Euryarchaeota root:Host-associated:Human:Digestive system:Oral 4.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Contaminated 2.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Silt 1.0 phylum Euryarchaeota root:Host-associated:Plants:Rhizosphere 5.0 -phylum Euryarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 10.0 +phylum Euryarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Wetlands 1.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil 37.0 -phylum Euryarchaeota root:Environmental:Aquatic:Marine:Sediment 80.0 +phylum Euryarchaeota root:Environmental:Aquatic:Marine:Sediment 82.0 phylum Euryarchaeota root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +phylum Euryarchaeota root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 phylum Euryarchaeota root:Environmental:Aquatic:Sediment 8.0 phylum Euryarchaeota root:Environmental:Aquatic 3.0 +phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Midgut 3.0 phylum Euryarchaeota root:Engineered:Biogas plant:Wet fermentation 9.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 phylum Euryarchaeota root:Host-associated:Porifera 3.0 +phylum Euryarchaeota root:Engineered:Lab enrichment 5.0 phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Stomach:Rumen 21.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Wetlands 5.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Grasslands 3.0 phylum Euryarchaeota root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 phylum Euryarchaeota root:Host-associated:Birds:Digestive system:Ceca 2.0 +phylum Euryarchaeota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Euryarchaeota root:Host-associated:Human:Digestive system 12.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater 3.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 6.0 @@ -11002,8 +11180,8 @@ phylum Euryarchaeota root:Environmental:Aquatic:Marine:Cold seeps 7.0 phylum Euryarchaeota root:Engineered:Solid waste:Composting 6.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Desert 4.0 phylum Euryarchaeota root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 21.0 -phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 22.0 +phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 phylum Euryarchaeota root:Host-associated:Arthropoda:Digestive system:Gut 3.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 phylum Euryarchaeota root:Engineered:Lab enrichment:Defined media 6.0 @@ -11013,7 +11191,6 @@ phylum Euryarchaeota root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Euryarchaeota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -phylum Euryarchaeota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Large intestine 4.0 phylum Euryarchaeota root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 @@ -11026,7 +11203,6 @@ phylum Euryarchaeota root:Engineered:Modeled 2.0 phylum Euryarchaeota root:Host-associated:Insecta:Digestive system 1.0 phylum Euryarchaeota root:Host-associated 4.0 phylum Euryarchaeota root:Host-associated:Mollusca 1.0 -phylum Euryarchaeota root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Euryarchaeota root:Host-associated:Fish:Digestive system 1.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Mine 1.0 phylum Euryarchaeota root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -11043,19 +11219,19 @@ phylum Euryarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Sediment phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Groundwater 6.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -phylum Euryarchaeota root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +phylum Euryarchaeota root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Pelagic 7.0 -phylum Euryarchaeota root:Engineered:Wastewater:Water and sludge 12.0 +phylum Euryarchaeota root:Engineered:Wastewater:Water and sludge 13.0 +phylum Euryarchaeota root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +phylum Euryarchaeota root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Euryarchaeota root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 phylum Euryarchaeota root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 phylum Euryarchaeota root:Host-associated:Mammals:Gastrointestinal tract 2.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -phylum Euryarchaeota root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Euryarchaeota root:Environmental:Terrestrial:Soil:Crop 1.0 phylum Euryarchaeota root:Engineered:Built environment 1.0 phylum Euryarchaeota root:Host-associated:Birds:Digestive system 3.0 -phylum Euryarchaeota root:Engineered:Lab enrichment 5.0 phylum Euryarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Euryarchaeota root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 2.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 2.0 @@ -11076,12 +11252,11 @@ phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Lotic:Acidic 1.0 phylum Euryarchaeota root:Host-associated:Fish:Skin 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 5.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -phylum Euryarchaeota root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Euryarchaeota root:Environmental:Air 1.0 phylum Euryarchaeota root:Host-associated:Arthropoda 1.0 phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +phylum Euryarchaeota root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 phylum Euryarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 phylum Euryarchaeota root:Host-associated:Human:Respiratory system 1.0 phylum Euryarchaeota root:Engineered:Bioremediation:Hydrocarbon 1.0 @@ -11111,69 +11286,73 @@ phylum Euryarchaeota root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 phylum Euryarchaeota root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lake 23.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Pond 3.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Sediment 24.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Fecal 72.0 -phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Sediment 26.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Fecal 75.0 +phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 phylum Firmicutes root:Host-associated:Birds:Digestive system:Fecal 13.0 phylum Firmicutes root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 2.0 phylum Firmicutes root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Firmicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 217.0 -phylum Firmicutes root:Environmental:Aquatic:Marine 143.0 +phylum Firmicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 228.0 +phylum Firmicutes root:Environmental:Aquatic:Marine 146.0 phylum Firmicutes root:Host-associated:Fish 6.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Sediment 15.0 -phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic 18.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system 35.0 -phylum Firmicutes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 19.0 +phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic 19.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system 37.0 +phylum Firmicutes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 20.0 phylum Firmicutes root:Environmental:Terrestrial:Geologic 3.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Forest soil 23.0 phylum Firmicutes root:Environmental:Aquatic:Lentic:Brackish 2.0 -phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 9.0 -phylum Firmicutes root:Host-associated:Human 23.0 +phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 10.0 +phylum Firmicutes root:Host-associated:Human 24.0 phylum Firmicutes root:Host-associated:Plants 42.0 phylum Firmicutes root:Environmental:Aquatic:Estuary:Sediment 9.0 phylum Firmicutes root:Engineered:Food production:Silage fermentation 1.0 -phylum Firmicutes root:Host-associated:Human:Digestive system:Large intestine 16.0 +phylum Firmicutes root:Host-associated:Human:Digestive system:Large intestine 17.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Agricultural 43.0 phylum Firmicutes root:Engineered:Bioreactor 104.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 7.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 9.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 28.0 phylum Firmicutes root:Engineered:Wastewater:Activated Sludge 75.0 phylum Firmicutes root:Host-associated:Human:Skin 30.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Permafrost 12.0 -phylum Firmicutes root:Mixed 29.0 -phylum Firmicutes root:Host-associated:Mammals 19.0 +phylum Firmicutes root:Mixed 31.0 +phylum Firmicutes root:Host-associated:Mammals 20.0 phylum Firmicutes root:Host-associated:Amphibia 5.0 -phylum Firmicutes root:Host-associated:Human:Digestive system:Intestine 3.0 -phylum Firmicutes root:Engineered:Food production:Fermented beverages 14.0 +phylum Firmicutes root:Host-associated:Human:Digestive system:Intestine 4.0 +phylum Firmicutes root:Engineered:Food production:Fermented beverages 15.0 phylum Firmicutes root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Firmicutes root:Engineered:Wastewater 25.0 phylum Firmicutes root:Host-associated:Human:Reproductive system:Vagina 16.0 -phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 9.0 -phylum Firmicutes root:Host-associated:Human:Digestive system:Oral 65.0 -phylum Firmicutes root:Engineered:Food production:Dairy products 27.0 +phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 10.0 +phylum Firmicutes root:Host-associated:Human:Digestive system:Oral 66.0 +phylum Firmicutes root:Engineered:Food production:Dairy products 29.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Contaminated 17.0 phylum Firmicutes root:Host-associated:Plants:Phylloplane 11.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Silt 1.0 -phylum Firmicutes root:Host-associated:Plants:Rhizosphere 46.0 -phylum Firmicutes root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 -phylum Firmicutes root:Environmental:Terrestrial:Soil 202.0 -phylum Firmicutes root:Environmental:Aquatic:Marine:Sediment 101.0 -phylum Firmicutes root:Engineered:Modeled:Simulated communities (microbial mixture) 11.0 +phylum Firmicutes root:Host-associated:Plants:Rhizosphere 48.0 +phylum Firmicutes root:Environmental:Aquatic:Marine:Coastal:Sediment 20.0 +phylum Firmicutes root:Environmental:Terrestrial:Soil 204.0 +phylum Firmicutes root:Environmental:Aquatic:Marine:Sediment 102.0 +phylum Firmicutes root:Engineered:Modeled:Simulated communities (microbial mixture) 13.0 +phylum Firmicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lotic 6.0 phylum Firmicutes root:Environmental:Aquatic:Sediment 20.0 phylum Firmicutes root:Environmental:Aquatic 9.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Midgut 6.0 phylum Firmicutes root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 phylum Firmicutes root:Engineered:Biogas plant:Wet fermentation 11.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Tropical rainforest 8.0 phylum Firmicutes root:Host-associated:Porifera 8.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +phylum Firmicutes root:Engineered:Lab enrichment 10.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Wetlands 9.0 phylum Firmicutes root:Engineered:Lab Synthesis 1.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Grasslands 12.0 phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 phylum Firmicutes root:Host-associated:Birds:Digestive system:Ceca 10.0 phylum Firmicutes root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Firmicutes root:Host-associated:Plants:Rhizosphere:Soil 27.0 phylum Firmicutes root:Host-associated:Human:Digestive system 39.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater 10.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -11187,11 +11366,11 @@ phylum Firmicutes root:Host-associated:Human:Respiratory system:Pulmonary system phylum Firmicutes root:Environmental:Aquatic:Freshwater:Drinking water 4.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Desert 14.0 phylum Firmicutes root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 62.0 phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Firmicutes root:Host-associated:Algae:Red algae 3.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 -phylum Firmicutes root:Host-associated:Arthropoda:Digestive system:Gut 7.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 +phylum Firmicutes root:Host-associated:Arthropoda:Digestive system:Gut 8.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Hydrothermal vents 7.0 phylum Firmicutes root:Engineered:Lab enrichment:Defined media 12.0 phylum Firmicutes root:Host-associated:Plants:Root 11.0 @@ -11201,10 +11380,9 @@ phylum Firmicutes root:Environmental:Terrestrial:Deep subsurface 2.0 phylum Firmicutes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Firmicutes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 11.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 16.0 -phylum Firmicutes root:Host-associated:Plants:Rhizosphere:Soil 25.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Large intestine 15.0 phylum Firmicutes root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -phylum Firmicutes root:Engineered:Food production:Fermented seafood 2.0 +phylum Firmicutes root:Engineered:Food production:Fermented seafood 3.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lentic 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Firmicutes root:Environmental:Aquatic:Estuary 11.0 @@ -11216,12 +11394,11 @@ phylum Firmicutes root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Oil-contaminated 7.0 phylum Firmicutes root:Engineered:Wastewater:Industrial wastewater 14.0 phylum Firmicutes root:Engineered:Modeled 5.0 -phylum Firmicutes root:Host-associated:Insecta:Digestive system 10.0 +phylum Firmicutes root:Host-associated:Insecta:Digestive system 11.0 phylum Firmicutes root:Host-associated 10.0 phylum Firmicutes root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum Firmicutes root:Host-associated:Mollusca 3.0 -phylum Firmicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Firmicutes root:Host-associated:Fish:Digestive system 2.0 +phylum Firmicutes root:Host-associated:Fish:Digestive system 3.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Mine 4.0 phylum Firmicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Sand 5.0 @@ -11238,16 +11415,17 @@ phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 4.0 phylum Firmicutes root:Host-associated:Human:Reproductive system:Female 2.0 phylum Firmicutes root:Engineered:Solid waste 1.0 phylum Firmicutes root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 phylum Firmicutes root:Environmental:Aquatic:Thermal springs:Sediment 5.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Groundwater 16.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Groundwater 17.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Marginal Sea 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Pelagic 4.0 -phylum Firmicutes root:Engineered:Wastewater:Water and sludge 22.0 +phylum Firmicutes root:Engineered:Wastewater:Water and sludge 24.0 phylum Firmicutes root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +phylum Firmicutes root:Host-associated:Invertebrates:Cnidaria:Coral 8.0 phylum Firmicutes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone 3.0 phylum Firmicutes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 4.0 @@ -11261,18 +11439,17 @@ phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contamin phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 phylum Firmicutes root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Firmicutes root:Host-associated:Reptile:Oral cavity 1.0 -phylum Firmicutes root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 +phylum Firmicutes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Ice 6.0 phylum Firmicutes root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Crop 3.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 phylum Firmicutes root:Host-associated:Fish:Digestive system:Intestine 4.0 -phylum Firmicutes root:Host-associated:Insecta 12.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 +phylum Firmicutes root:Host-associated:Insecta 13.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 3.0 phylum Firmicutes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Firmicutes root:Engineered:Built environment 12.0 +phylum Firmicutes root:Engineered:Built environment 13.0 phylum Firmicutes root:Host-associated:Birds:Digestive system 7.0 -phylum Firmicutes root:Engineered:Lab enrichment 10.0 phylum Firmicutes root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Firmicutes root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 @@ -11302,33 +11479,35 @@ phylum Firmicutes root:Host-associated:Fish:Skin 2.0 phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Firmicutes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 7.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -phylum Firmicutes root:Host-associated:Mammals:Digestive system:Midgut 3.0 +phylum Firmicutes root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Firmicutes root:Environmental:Air 1.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Firmicutes root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Firmicutes root:Host-associated:Arthropoda 4.0 phylum Firmicutes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 -phylum Firmicutes root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +phylum Firmicutes root:Environmental:Aquatic:Freshwater:Pond:Sediment 4.0 phylum Firmicutes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 phylum Firmicutes root:Host-associated:Fungi 1.0 phylum Firmicutes root:Engineered:Bioremediation 3.0 phylum Firmicutes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 4.0 phylum Firmicutes root:Host-associated:Human:Respiratory system 4.0 phylum Firmicutes root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Firmicutes root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 phylum Firmicutes root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Firmicutes root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 phylum Firmicutes root:Engineered:Biotransformation 4.0 phylum Firmicutes root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 -phylum Firmicutes root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +phylum Firmicutes root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 phylum Firmicutes root:Host-associated:Mammals:Skin 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 -phylum Firmicutes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +phylum Firmicutes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 phylum Firmicutes root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 phylum Firmicutes root:Environmental:Terrestrial:Oil reservoir 1.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 phylum Firmicutes root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +phylum Firmicutes root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 phylum Firmicutes root:Environmental:Terrestrial:Soil:Mine drainage 1.0 phylum Firmicutes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 @@ -11356,6 +11535,7 @@ phylum Firmicutes root:Environmental:Terrestrial:Volcanic 3.0 phylum Firmicutes root:Environmental:Aquatic:Lentic 1.0 phylum Firmicutes root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Wetlands 1.0 +phylum Firmicutes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 phylum Firmicutes root:Host-associated:Protozoa 1.0 phylum Firmicutes root:Engineered:Solid waste:Composting:Grass 1.0 phylum Firmicutes root:Host-associated:Invertebrates 1.0 @@ -11374,9 +11554,9 @@ phylum Firmicutes root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 phylum Firmicutes root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 phylum Firmicutes root:Environmental:Terrestrial:Agricultural field 1.0 phylum Firmicutes root:Host-associated:Mammals:Milk 1.0 +phylum Firmicutes root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Firmicutes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 phylum Firmicutes root:Engineered:Solid waste:Solid animal waste 1.0 -phylum Firmicutes root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Firmicutes root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 phylum Firmicutes root:Host-associated:Spiralia 1.0 phylum Firmicutes root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 @@ -11395,7 +11575,7 @@ class Spartobacteria root:Mixed 4.0 class Spartobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 class Spartobacteria root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Spartobacteria root:Host-associated:Plants:Rhizosphere 10.0 -class Spartobacteria root:Environmental:Terrestrial:Soil 24.0 +class Spartobacteria root:Environmental:Terrestrial:Soil 26.0 class Spartobacteria root:Environmental:Aquatic:Marine:Sediment 1.0 class Spartobacteria root:Environmental:Aquatic:Sediment 1.0 class Spartobacteria root:Environmental:Aquatic 1.0 @@ -11433,26 +11613,26 @@ order Frankiales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Frankiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Lake 11.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Pond 4.0 -order Rhodobacterales root:Environmental:Aquatic:Freshwater:Sediment 3.0 +order Rhodobacterales root:Environmental:Aquatic:Freshwater:Sediment 4.0 order Rhodobacterales root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 order Rhodobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -order Rhodobacterales root:Environmental:Aquatic:Marine 278.0 +order Rhodobacterales root:Environmental:Aquatic:Marine 297.0 order Rhodobacterales root:Host-associated:Fish 4.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 -order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic 68.0 +order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic 70.0 order Rhodobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 order Rhodobacterales root:Environmental:Terrestrial:Geologic 1.0 order Rhodobacterales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Rhodobacterales root:Environmental:Aquatic:Lentic:Brackish 15.0 -order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 +order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 12.0 order Rhodobacterales root:Host-associated:Plants 6.0 order Rhodobacterales root:Environmental:Aquatic:Estuary:Sediment 10.0 order Rhodobacterales root:Engineered:Food production:Silage fermentation 1.0 order Rhodobacterales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Rhodobacterales root:Environmental:Terrestrial:Soil:Agricultural 3.0 order Rhodobacterales root:Engineered:Bioreactor 17.0 -order Rhodobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 +order Rhodobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 order Rhodobacterales root:Engineered:Wastewater:Activated Sludge 19.0 order Rhodobacterales root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 @@ -11461,13 +11641,13 @@ order Rhodobacterales root:Mixed 12.0 order Rhodobacterales root:Host-associated:Mammals 5.0 order Rhodobacterales root:Host-associated:Amphibia 1.0 order Rhodobacterales root:Engineered:Wastewater 3.0 -order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 53.0 +order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 56.0 order Rhodobacterales root:Host-associated:Plants:Phylloplane 1.0 order Rhodobacterales root:Host-associated:Plants:Rhizosphere 1.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 18.0 order Rhodobacterales root:Environmental:Terrestrial:Soil 15.0 -order Rhodobacterales root:Environmental:Aquatic:Marine:Sediment 62.0 -order Rhodobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +order Rhodobacterales root:Environmental:Aquatic:Marine:Sediment 63.0 +order Rhodobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Rhodobacterales root:Environmental:Aquatic:Sediment 9.0 order Rhodobacterales root:Environmental:Aquatic 5.0 @@ -11484,7 +11664,7 @@ order Rhodobacterales root:Environmental:Aquatic:Freshwater:Drinking water 3.0 order Rhodobacterales root:Environmental:Terrestrial:Soil:Desert 7.0 order Rhodobacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 order Rhodobacterales root:Host-associated:Algae:Red algae 8.0 -order Rhodobacterales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +order Rhodobacterales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 order Rhodobacterales root:Engineered:Lab enrichment:Defined media 6.0 order Rhodobacterales root:Host-associated:Plants:Root 1.0 @@ -11509,23 +11689,23 @@ order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated order Rhodobacterales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 5.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -order Rhodobacterales root:Environmental:Aquatic:Freshwater:Groundwater 8.0 +order Rhodobacterales root:Environmental:Aquatic:Freshwater:Groundwater 9.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -order Rhodobacterales root:Environmental:Aquatic:Marine:Marginal Sea 4.0 +order Rhodobacterales root:Environmental:Aquatic:Marine:Marginal Sea 5.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Pelagic 14.0 order Rhodobacterales root:Engineered:Wastewater:Water and sludge 1.0 -order Rhodobacterales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Rhodobacterales root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +order Rhodobacterales root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 order Rhodobacterales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Rhodobacterales root:Host-associated:Invertebrates:Echinodermata 1.0 order Rhodobacterales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -order Rhodobacterales root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 order Rhodobacterales root:Host-associated:Fish:Digestive system:Intestine 3.0 order Rhodobacterales root:Host-associated:Insecta 2.0 order Rhodobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Rhodobacterales root:Engineered:Built environment 2.0 +order Rhodobacterales root:Engineered:Built environment 3.0 order Rhodobacterales root:Host-associated:Birds:Digestive system 1.0 order Rhodobacterales root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 @@ -11564,6 +11744,7 @@ order Rhodobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents:Micro order Rhodobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 order Rhodobacterales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 order Rhodobacterales root:Environmental:Aquatic:Lentic 1.0 +order Rhodobacterales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 order Rhodobacterales root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 order Rhodobacterales root:Host-associated:Mollusca:Digestive system:Glands 1.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Volcanic 1.0 @@ -11571,14 +11752,13 @@ order Rhodobacterales root:Host-associated:Algae:Brown Algae 2.0 order Rhodobacterales root:Host-associated:Microbial:Bacteria 1.0 order Rhodobacterales root:Environmental:Aquatic:Marine:Oil seeps 1.0 order Rhodobacterales root:Host-associated:Invertebrates:Cnidaria 1.0 -order Rhodobacterales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lake 10.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Sediment 5.0 -order Sphingomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 -order Sphingomonadales root:Environmental:Aquatic:Marine 80.0 +order Sphingomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +order Sphingomonadales root:Environmental:Aquatic:Marine 98.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic 8.0 +order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic 10.0 order Sphingomonadales root:Host-associated:Mammals:Digestive system 1.0 order Sphingomonadales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 order Sphingomonadales root:Environmental:Terrestrial:Geologic 2.0 @@ -11607,7 +11787,7 @@ order Sphingomonadales root:Environmental:Terrestrial:Soil:Contaminated 5.0 order Sphingomonadales root:Host-associated:Plants:Phylloplane 8.0 order Sphingomonadales root:Host-associated:Plants:Rhizosphere 27.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -order Sphingomonadales root:Environmental:Terrestrial:Soil 74.0 +order Sphingomonadales root:Environmental:Terrestrial:Soil 75.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Sediment 14.0 order Sphingomonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lotic 2.0 @@ -11615,9 +11795,11 @@ order Sphingomonadales root:Environmental:Aquatic:Sediment 3.0 order Sphingomonadales root:Environmental:Aquatic 2.0 order Sphingomonadales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Sphingomonadales root:Host-associated:Porifera 2.0 +order Sphingomonadales root:Engineered:Lab enrichment 1.0 order Sphingomonadales root:Environmental:Terrestrial:Soil:Grasslands 3.0 +order Sphingomonadales root:Host-associated:Plants:Rhizosphere:Soil 13.0 order Sphingomonadales root:Host-associated:Human:Digestive system 2.0 -order Sphingomonadales root:Environmental:Aquatic:Freshwater 5.0 +order Sphingomonadales root:Environmental:Aquatic:Freshwater 6.0 order Sphingomonadales root:Environmental:Aquatic:Thermal springs 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Coastal 5.0 order Sphingomonadales root:Engineered:Solid waste:Composting 5.0 @@ -11630,7 +11812,6 @@ order Sphingomonadales root:Host-associated:Plants:Root 6.0 order Sphingomonadales root:Engineered:Food production 2.0 order Sphingomonadales root:Environmental:Terrestrial:Deep subsurface 1.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -order Sphingomonadales root:Host-associated:Plants:Rhizosphere:Soil 12.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 order Sphingomonadales root:Environmental:Aquatic:Estuary 12.0 @@ -11649,25 +11830,25 @@ order Sphingomonadales root:Engineered:Bioreactor:Continuous culture 2.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 2.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 order Sphingomonadales root:Host-associated:Human:Reproductive system:Female 1.0 -order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +order Sphingomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 order Sphingomonadales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -order Sphingomonadales root:Environmental:Aquatic:Freshwater:Groundwater 11.0 +order Sphingomonadales root:Environmental:Aquatic:Freshwater:Groundwater 12.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Pelagic 1.0 order Sphingomonadales root:Engineered:Wastewater:Water and sludge 3.0 order Sphingomonadales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Sphingomonadales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Ice 2.0 order Sphingomonadales root:Environmental:Terrestrial:Soil:Crop 1.0 order Sphingomonadales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -order Sphingomonadales root:Host-associated:Insecta 1.0 +order Sphingomonadales root:Host-associated:Insecta 2.0 order Sphingomonadales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Sphingomonadales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Sphingomonadales root:Engineered:Built environment 4.0 -order Sphingomonadales root:Engineered:Lab enrichment 1.0 order Sphingomonadales root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 order Sphingomonadales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Sphingomonadales root:Host-associated:Algae 2.0 @@ -11690,7 +11871,7 @@ order Sphingomonadales root:Engineered:Bioremediation 1.0 order Sphingomonadales root:Host-associated:Human:Respiratory system 1.0 order Sphingomonadales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order Sphingomonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 -order Sphingomonadales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +order Sphingomonadales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 order Sphingomonadales root:Host-associated:Mammals:Skin 1.0 order Sphingomonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Sphingomonadales root:Host-associated:Human:Circulatory system 1.0 @@ -11704,18 +11885,20 @@ order Sphingomonadales root:Environmental:Terrestrial:Agricultural field 1.0 order Synechococcales root:Environmental:Aquatic:Freshwater:Lake 15.0 order Synechococcales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Synechococcales root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 -order Synechococcales root:Environmental:Aquatic:Marine 114.0 +order Synechococcales root:Environmental:Aquatic:Marine 117.0 order Synechococcales root:Host-associated:Fish 1.0 order Synechococcales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -order Synechococcales root:Environmental:Aquatic:Marine:Oceanic 39.0 +order Synechococcales root:Environmental:Aquatic:Marine:Oceanic 41.0 order Synechococcales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 order Synechococcales root:Environmental:Aquatic:Lentic:Brackish 1.0 +order Synechococcales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Synechococcales root:Host-associated:Plants 2.0 order Synechococcales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Synechococcales root:Host-associated:Human:Digestive system:Large intestine 2.0 order Synechococcales root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 order Synechococcales root:Mixed 7.0 order Synechococcales root:Host-associated:Mammals 1.0 +order Synechococcales root:Host-associated:Human:Digestive system:Intestine 1.0 order Synechococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 19.0 order Synechococcales root:Engineered:Food production:Dairy products 1.0 order Synechococcales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -11752,8 +11935,8 @@ order Synechococcales root:Environmental:Aquatic:Freshwater:Groundwater 2.0 order Synechococcales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Synechococcales root:Environmental:Aquatic:Marine:Pelagic 5.0 order Synechococcales root:Engineered:Wastewater:Water and sludge 2.0 -order Synechococcales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Synechococcales root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 +order Synechococcales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Synechococcales root:Host-associated:Insecta 2.0 order Synechococcales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 order Synechococcales root:Engineered 2.0 @@ -11772,6 +11955,7 @@ order Chitinophagales root:Host-associated:Human:Digestive system:Large intestin order Chitinophagales root:Environmental:Aquatic:Marine 4.0 order Chitinophagales root:Host-associated:Fish 1.0 order Chitinophagales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +order Chitinophagales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Chitinophagales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Chitinophagales root:Environmental:Terrestrial:Soil:Forest soil 4.0 order Chitinophagales root:Host-associated:Human 1.0 @@ -11781,7 +11965,7 @@ order Chitinophagales root:Environmental:Terrestrial:Soil:Agricultural 8.0 order Chitinophagales root:Engineered:Bioreactor 11.0 order Chitinophagales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 order Chitinophagales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 -order Chitinophagales root:Engineered:Wastewater:Activated Sludge 23.0 +order Chitinophagales root:Engineered:Wastewater:Activated Sludge 24.0 order Chitinophagales root:Mixed 10.0 order Chitinophagales root:Host-associated:Mammals 3.0 order Chitinophagales root:Host-associated:Amphibia 1.0 @@ -11789,13 +11973,13 @@ order Chitinophagales root:Engineered:Wastewater 7.0 order Chitinophagales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30.0 order Chitinophagales root:Host-associated:Plants:Rhizosphere 28.0 order Chitinophagales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -order Chitinophagales root:Environmental:Terrestrial:Soil 34.0 +order Chitinophagales root:Environmental:Terrestrial:Soil 36.0 order Chitinophagales root:Environmental:Aquatic:Marine:Sediment 6.0 order Chitinophagales root:Environmental:Aquatic:Sediment 3.0 order Chitinophagales root:Environmental:Aquatic 1.0 order Chitinophagales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Chitinophagales root:Host-associated:Human:Digestive system 2.0 -order Chitinophagales root:Environmental:Aquatic:Freshwater 1.0 +order Chitinophagales root:Environmental:Aquatic:Freshwater 2.0 order Chitinophagales root:Environmental:Aquatic:Marine:Coastal 2.0 order Chitinophagales root:Engineered:Solid waste:Composting 6.0 order Chitinophagales root:Environmental:Aquatic:Freshwater:Drinking water 3.0 @@ -11861,24 +12045,24 @@ family Sporichthyaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Sporichthyaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Lake 11.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Pond 4.0 -family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 +family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 family Rhodobacteraceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine 285.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine 304.0 family Rhodobacteraceae root:Host-associated:Fish 5.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oceanic 72.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oceanic 75.0 family Rhodobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Lentic:Brackish 13.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 13.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 14.0 family Rhodobacteraceae root:Host-associated:Plants 7.0 family Rhodobacteraceae root:Environmental:Aquatic:Estuary:Sediment 11.0 family Rhodobacteraceae root:Engineered:Food production:Silage fermentation 1.0 family Rhodobacteraceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 4.0 family Rhodobacteraceae root:Engineered:Bioreactor 18.0 -family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 +family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 family Rhodobacteraceae root:Engineered:Wastewater:Activated Sludge 24.0 family Rhodobacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 @@ -11887,13 +12071,13 @@ family Rhodobacteraceae root:Mixed 16.0 family Rhodobacteraceae root:Host-associated:Mammals 4.0 family Rhodobacteraceae root:Host-associated:Amphibia 1.0 family Rhodobacteraceae root:Engineered:Wastewater 5.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 52.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 55.0 family Rhodobacteraceae root:Host-associated:Plants:Phylloplane 1.0 family Rhodobacteraceae root:Host-associated:Plants:Rhizosphere 2.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 18.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil 21.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Sediment 78.0 -family Rhodobacteraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Sediment 79.0 +family Rhodobacteraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 6.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Sediment 9.0 family Rhodobacteraceae root:Environmental:Aquatic 6.0 @@ -11901,6 +12085,7 @@ family Rhodobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sed family Rhodobacteraceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Rhodobacteraceae root:Host-associated:Porifera 12.0 +family Rhodobacteraceae root:Engineered:Lab enrichment 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater 7.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 19.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Coastal 50.0 @@ -11910,7 +12095,7 @@ family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Drinking water 3.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil:Desert 7.0 family Rhodobacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Rhodobacteraceae root:Host-associated:Algae:Red algae 7.0 -family Rhodobacteraceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +family Rhodobacteraceae root:Host-associated:Arthropoda:Digestive system:Gut 2.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 family Rhodobacteraceae root:Engineered:Lab enrichment:Defined media 6.0 family Rhodobacteraceae root:Host-associated:Plants:Root 1.0 @@ -11935,12 +12120,13 @@ family Rhodobacteraceae root:Engineered:Solid waste 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 4.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 6.0 -family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 8.0 +family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 9.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 3.0 -family Rhodobacteraceae root:Environmental:Aquatic:Marine:Marginal Sea 5.0 +family Rhodobacteraceae root:Environmental:Aquatic:Marine:Marginal Sea 6.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Pelagic 13.0 family Rhodobacteraceae root:Engineered:Wastewater:Water and sludge 2.0 -family Rhodobacteraceae root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +family Rhodobacteraceae root:Engineered:Lab enrichment:Defined media:Marine media 3.0 +family Rhodobacteraceae root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone 2.0 family Rhodobacteraceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Rhodobacteraceae root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -11948,13 +12134,11 @@ family Rhodobacteraceae root:Environmental:Terrestrial:Rock-dwelling (subaerial family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -family Rhodobacteraceae root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 family Rhodobacteraceae root:Host-associated:Fish:Digestive system:Intestine 3.0 family Rhodobacteraceae root:Host-associated:Insecta 2.0 family Rhodobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -family Rhodobacteraceae root:Engineered:Built environment 2.0 +family Rhodobacteraceae root:Engineered:Built environment 3.0 family Rhodobacteraceae root:Host-associated:Birds:Digestive system 1.0 -family Rhodobacteraceae root:Engineered:Lab enrichment 1.0 family Rhodobacteraceae root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 family Rhodobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -11994,6 +12178,7 @@ family Rhodobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Mic family Rhodobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 family Rhodobacteraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Lentic 1.0 +family Rhodobacteraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 family Rhodobacteraceae root:Host-associated:Invertebrates 1.0 family Rhodobacteraceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 family Rhodobacteraceae root:Host-associated:Mollusca:Digestive system:Glands 1.0 @@ -12002,7 +12187,6 @@ family Rhodobacteraceae root:Host-associated:Algae:Brown Algae 2.0 family Rhodobacteraceae root:Host-associated:Microbial:Bacteria 1.0 family Rhodobacteraceae root:Environmental:Aquatic:Marine:Oil seeps 1.0 family Rhodobacteraceae root:Host-associated:Invertebrates:Cnidaria 1.0 -family Rhodobacteraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Lake 8.0 family Verrucomicrobiaceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 family Verrucomicrobiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 17.0 @@ -12022,8 +12206,11 @@ family Verrucomicrobiaceae root:Host-associated:Plants:Rhizosphere 3.0 family Verrucomicrobiaceae root:Environmental:Terrestrial:Soil 2.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Sediment 12.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Sediment 2.0 +family Verrucomicrobiaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Verrucomicrobiaceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Verrucomicrobiaceae root:Host-associated:Porifera 1.0 +family Verrucomicrobiaceae root:Engineered:Lab enrichment 1.0 +family Verrucomicrobiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater 2.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Coastal 8.0 family Verrucomicrobiaceae root:Engineered:Solid waste:Composting 3.0 @@ -12032,7 +12219,6 @@ family Verrucomicrobiaceae root:Host-associated:Mammals:Digestive system:Large i family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 family Verrucomicrobiaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Verrucomicrobiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Verrucomicrobiaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Estuary 5.0 @@ -12045,7 +12231,7 @@ family Verrucomicrobiaceae root:Host-associated:Mollusca 1.0 family Verrucomicrobiaceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 family Verrucomicrobiaceae root:Engineered:Bioreactor:Continuous culture 1.0 -family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 @@ -12053,11 +12239,9 @@ family Verrucomicrobiaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil family Verrucomicrobiaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Verrucomicrobiaceae root:Host-associated:Insecta 1.0 family Verrucomicrobiaceae root:Host-associated:Birds:Digestive system 1.0 -family Verrucomicrobiaceae root:Engineered:Lab enrichment 1.0 family Verrucomicrobiaceae root:Host-associated:Algae 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -family Verrucomicrobiaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 family Verrucomicrobiaceae root:Engineered:Bioremediation 1.0 family Verrucomicrobiaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -12078,19 +12262,21 @@ family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 17.0 family Anaerolineaceae root:Engineered:Wastewater:Activated Sludge 45.0 family Anaerolineaceae root:Environmental:Terrestrial:Soil:Permafrost 3.0 family Anaerolineaceae root:Mixed 3.0 +family Anaerolineaceae root:Host-associated:Mammals 1.0 family Anaerolineaceae root:Engineered:Wastewater 6.0 -family Anaerolineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Anaerolineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Anaerolineaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Anaerolineaceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 -family Anaerolineaceae root:Host-associated:Plants:Rhizosphere 2.0 +family Anaerolineaceae root:Host-associated:Plants:Rhizosphere 4.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 family Anaerolineaceae root:Environmental:Terrestrial:Soil 11.0 -family Anaerolineaceae root:Environmental:Aquatic:Marine:Sediment 62.0 +family Anaerolineaceae root:Environmental:Aquatic:Marine:Sediment 64.0 family Anaerolineaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Anaerolineaceae root:Environmental:Aquatic:Sediment 11.0 family Anaerolineaceae root:Environmental:Aquatic 3.0 family Anaerolineaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Anaerolineaceae root:Engineered:Lab enrichment 3.0 family Anaerolineaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Anaerolineaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -12104,8 +12290,10 @@ family Anaerolineaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 11.0 family Anaerolineaceae root:Engineered:Wastewater:Industrial wastewater 2.0 family Anaerolineaceae root:Engineered:Bioreactor:Continuous culture 2.0 +family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Anaerolineaceae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 +family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Anaerolineaceae root:Engineered:Wastewater:Water and sludge 1.0 @@ -12114,7 +12302,6 @@ family Anaerolineaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -family Anaerolineaceae root:Engineered:Lab enrichment 3.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 family Anaerolineaceae root:Engineered:Biogas plant 2.0 family Anaerolineaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -12122,12 +12309,13 @@ family Anaerolineaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 3.0 family Anaerolineaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 -family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 family Anaerolineaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 family Anaerolineaceae root 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Wetlands 1.0 +family Anaerolineaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Anaerolineaceae root:Host-associated:Microbial 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Volcanic 1.0 family Anaerolineaceae root:Environmental:Aquatic:Marine:Oil seeps 1.0 @@ -12136,7 +12324,7 @@ family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Pond 4.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Microbacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 family Microbacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -family Microbacteriaceae root:Environmental:Aquatic:Marine 35.0 +family Microbacteriaceae root:Environmental:Aquatic:Marine 36.0 family Microbacteriaceae root:Host-associated:Fish 1.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Oceanic 9.0 @@ -12144,7 +12332,7 @@ family Microbacteriaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Microbacteriaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Microbacteriaceae root:Host-associated:Human 2.0 -family Microbacteriaceae root:Host-associated:Plants 14.0 +family Microbacteriaceae root:Host-associated:Plants 15.0 family Microbacteriaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 family Microbacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Microbacteriaceae root:Engineered:Bioreactor 12.0 @@ -12163,7 +12351,9 @@ family Microbacteriaceae root:Environmental:Terrestrial:Soil 10.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Microbacteriaceae root:Environmental:Aquatic:Sediment 1.0 +family Microbacteriaceae root:Engineered:Lab enrichment 3.0 family Microbacteriaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Microbacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater 4.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Coastal 11.0 @@ -12173,7 +12363,6 @@ family Microbacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1. family Microbacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 family Microbacteriaceae root:Host-associated:Plants:Root 2.0 family Microbacteriaceae root:Engineered:Food production 2.0 -family Microbacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Microbacteriaceae root:Environmental:Aquatic:Estuary 12.0 family Microbacteriaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -12188,14 +12377,13 @@ family Microbacteriaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater 4.0 -family Microbacteriaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +family Microbacteriaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Microbacteriaceae root:Environmental:Aquatic:Marine:Pelagic 3.0 family Microbacteriaceae root:Engineered:Wastewater:Water and sludge 2.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Microbacteriaceae root:Environmental:Aquatic:Freshwater:Ice 3.0 -family Microbacteriaceae root:Host-associated:Insecta 4.0 -family Microbacteriaceae root:Engineered:Built environment 3.0 -family Microbacteriaceae root:Engineered:Lab enrichment 3.0 +family Microbacteriaceae root:Host-associated:Insecta 5.0 +family Microbacteriaceae root:Engineered:Built environment 4.0 family Microbacteriaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Microbacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Microbacteriaceae root:Host-associated:Birds 2.0 @@ -12215,10 +12403,10 @@ family Microbacteriaceae root:Engineered:Solid waste:Composting:Grass 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Lake 8.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Sediment 7.0 family Sphingomonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 -family Sphingomonadaceae root:Environmental:Aquatic:Marine 42.0 +family Sphingomonadaceae root:Environmental:Aquatic:Marine 45.0 family Sphingomonadaceae root:Host-associated:Fish 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -family Sphingomonadaceae root:Environmental:Aquatic:Marine:Oceanic 4.0 +family Sphingomonadaceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Sphingomonadaceae root:Host-associated:Mammals:Digestive system 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 family Sphingomonadaceae root:Environmental:Terrestrial:Geologic 2.0 @@ -12246,17 +12434,19 @@ family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Contaminated 7.0 family Sphingomonadaceae root:Host-associated:Plants:Phylloplane 7.0 family Sphingomonadaceae root:Host-associated:Plants:Rhizosphere 41.0 family Sphingomonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -family Sphingomonadaceae root:Environmental:Terrestrial:Soil 84.0 +family Sphingomonadaceae root:Environmental:Terrestrial:Soil 85.0 family Sphingomonadaceae root:Environmental:Aquatic:Marine:Sediment 12.0 family Sphingomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Sphingomonadaceae root:Environmental:Aquatic 1.0 family Sphingomonadaceae root:Host-associated:Porifera 1.0 +family Sphingomonadaceae root:Engineered:Lab enrichment 1.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Grasslands 6.0 family Sphingomonadaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +family Sphingomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 15.0 family Sphingomonadaceae root:Host-associated:Human:Digestive system 1.0 -family Sphingomonadaceae root:Environmental:Aquatic:Freshwater 5.0 +family Sphingomonadaceae root:Environmental:Aquatic:Freshwater 6.0 family Sphingomonadaceae root:Environmental:Aquatic:Marine:Coastal 3.0 family Sphingomonadaceae root:Engineered:Solid waste:Composting 2.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Drinking water 5.0 @@ -12265,7 +12455,6 @@ family Sphingomonadaceae root:Host-associated:Plants:Root 7.0 family Sphingomonadaceae root:Engineered:Food production 2.0 family Sphingomonadaceae root:Environmental:Terrestrial:Deep subsurface 2.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Sphingomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 14.0 family Sphingomonadaceae root:Environmental:Aquatic:Estuary 16.0 family Sphingomonadaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -12281,19 +12470,20 @@ family Sphingomonadaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Sphingomonadaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Sphingomonadaceae root:Host-associated:Human:Reproductive system:Female 1.0 +family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Thermal springs:Sediment 3.0 -family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 7.0 +family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 8.0 family Sphingomonadaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Sphingomonadaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Sphingomonadaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Ice 2.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Crop 2.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -family Sphingomonadaceae root:Host-associated:Insecta 1.0 +family Sphingomonadaceae root:Host-associated:Insecta 2.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Sphingomonadaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Sphingomonadaceae root:Engineered:Built environment 4.0 -family Sphingomonadaceae root:Engineered:Lab enrichment 1.0 family Sphingomonadaceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Sphingomonadaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Sphingomonadaceae root:Host-associated:Algae 2.0 @@ -12308,6 +12498,7 @@ family Sphingomonadaceae root:Environmental:Aquatic:Aquaculture 1.0 family Sphingomonadaceae root:Engineered:Industrial production 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +family Sphingomonadaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Sphingomonadaceae root:Host-associated:Arthropoda 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Sphingomonadaceae root:Host-associated:Fungi 1.0 @@ -12321,6 +12512,7 @@ family Sphingomonadaceae root:Host-associated:Mollusca:Digestive system 1.0 family Sphingomonadaceae root:Host-associated:Human:Circulatory system 1.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Loam 1.0 family Sphingomonadaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 2.0 +family Sphingomonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Sphingomonadaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 family Sphingomonadaceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Sphingomonadaceae root:Environmental:Terrestrial:Agricultural field 1.0 @@ -12351,6 +12543,7 @@ family Cytophagaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Cytophagaceae root:Environmental:Aquatic:Sediment 1.0 family Cytophagaceae root:Environmental:Aquatic 1.0 family Cytophagaceae root:Host-associated:Porifera 1.0 +family Cytophagaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Cytophagaceae root:Environmental:Aquatic:Freshwater 2.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -12359,7 +12552,6 @@ family Cytophagaceae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 family Cytophagaceae root:Environmental:Terrestrial:Soil:Desert 2.0 family Cytophagaceae root:Host-associated:Algae:Red algae 4.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -family Cytophagaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Cytophagaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Cytophagaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -12374,8 +12566,8 @@ family Cytophagaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Cytophagaceae root:Environmental:Aquatic:Marine:Pelagic 3.0 family Cytophagaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -family Cytophagaceae root:Host-associated:Reptile:Oral cavity 1.0 family Cytophagaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Cytophagaceae root:Host-associated:Reptile:Oral cavity 1.0 family Cytophagaceae root:Environmental:Aquatic:Freshwater:Ice 3.0 family Cytophagaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Cytophagaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 @@ -12451,29 +12643,30 @@ genus Mycobacterium root:Engineered:Wastewater 1.0 genus Mycobacterium root:Environmental:Terrestrial:Soil:Contaminated 3.0 genus Mycobacterium root:Host-associated:Plants:Rhizosphere 12.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -genus Mycobacterium root:Environmental:Terrestrial:Soil 21.0 +genus Mycobacterium root:Environmental:Terrestrial:Soil 22.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Sediment 10.0 genus Mycobacterium root:Environmental:Aquatic:Sediment 3.0 genus Mycobacterium root:Environmental:Aquatic 3.0 genus Mycobacterium root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Mycobacterium root:Host-associated:Porifera 1.0 genus Mycobacterium root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Mycobacterium root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Coastal 4.0 genus Mycobacterium root:Engineered:Solid waste:Composting 4.0 genus Mycobacterium root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Mycobacterium root:Host-associated:Plants:Root 3.0 genus Mycobacterium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Mycobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 genus Mycobacterium root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 genus Mycobacterium root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Mycobacterium root:Engineered:Wastewater:Industrial wastewater 4.0 genus Mycobacterium root:Engineered:Bioreactor:Continuous culture 1.0 genus Mycobacterium root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 +genus Mycobacterium root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Mycobacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Mycobacterium root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -genus Mycobacterium root:Engineered:Wastewater:Water and sludge 1.0 +genus Mycobacterium root:Engineered:Wastewater:Water and sludge 2.0 genus Mycobacterium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Mycobacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Mycobacterium root:Environmental:Terrestrial:Soil:Crop 1.0 @@ -12487,6 +12680,7 @@ genus Mycobacterium root:Host-associated:Fungi 1.0 genus Mycobacterium root:Engineered:Bioremediation 1.0 genus Mycobacterium root:Engineered:Bioremediation:Hydrocarbon 1.0 genus Mycobacterium root:Engineered:Biotransformation 2.0 +genus Mycobacterium root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Mycobacterium root:Host-associated:Mollusca:Digestive system 1.0 genus Mycobacterium root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Mycobacterium root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 @@ -12502,12 +12696,13 @@ genus Pirellula root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 genus Pirellula root:Engineered:Wastewater 1.0 genus Pirellula root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Pirellula root:Host-associated:Plants:Rhizosphere 1.0 -genus Pirellula root:Environmental:Terrestrial:Soil 5.0 +genus Pirellula root:Environmental:Terrestrial:Soil 6.0 genus Pirellula root:Environmental:Aquatic:Marine:Sediment 8.0 genus Pirellula root:Environmental:Aquatic:Sediment 1.0 genus Pirellula root:Engineered:Biogas plant:Wet fermentation 1.0 genus Pirellula root:Environmental:Aquatic:Marine:Coastal 1.0 genus Pirellula root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 +genus Pirellula root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Pirellula root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 genus Pirellula root:Host-associated:Invertebrates:Cnidaria 1.0 genus Pseudarcicella root:Environmental:Aquatic:Freshwater:Lake 3.0 @@ -12523,10 +12718,11 @@ species uncultured bacterium root:Environmental:Aquatic:Freshwater:Lake 8.0 species uncultured bacterium root:Environmental:Aquatic:Freshwater:Pond 1.0 species uncultured bacterium root:Environmental:Aquatic:Freshwater:Sediment 2.0 species uncultured bacterium root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species uncultured bacterium root:Environmental:Aquatic:Marine 118.0 +species uncultured bacterium root:Environmental:Aquatic:Marine 119.0 species uncultured bacterium root:Host-associated:Fish 2.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Oceanic 33.0 +species uncultured bacterium root:Host-associated:Mammals:Digestive system 1.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 species uncultured bacterium root:Host-associated:Plants 5.0 species uncultured bacterium root:Environmental:Aquatic:Estuary:Sediment 4.0 @@ -12572,10 +12768,10 @@ species uncultured bacterium root:Environmental:Aquatic:Marine:Marginal Sea 5.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Pelagic 6.0 species uncultured bacterium root:Engineered:Wastewater:Water and sludge 1.0 species uncultured bacterium root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +species uncultured bacterium root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Intertidal zone 1.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 species uncultured bacterium root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -species uncultured bacterium root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 species uncultured bacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 species uncultured bacterium root:Host-associated:Fish:Digestive system:Intestine 2.0 species uncultured bacterium root:Host-associated:Insecta 1.0 @@ -12630,10 +12826,11 @@ species Burkholderiales bacterium X4 root:Environmental:Terrestrial:Soil:Contami species Burkholderiales bacterium X4 root:Environmental:Terrestrial:Soil 1.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Marine:Sediment 2.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Sediment 3.0 +species Burkholderiales bacterium X4 root:Engineered:Lab enrichment 1.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Marine:Coastal 1.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 +species Burkholderiales bacterium X4 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Burkholderiales bacterium X4 root:Engineered:Lab enrichment 1.0 species Burkholderiales bacterium X4 root:Environmental 1.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 species Burkholderiales bacterium X4 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 @@ -12686,6 +12883,8 @@ species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Terre species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Terrestrial:Soil 1.0 species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Aquatic:Marine:Sediment 1.0 species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Aquatic:Sediment 3.0 +species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species NC10 bacterium enrichment culture clone Ino-F12 root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 species Limnolyngbya circumcreta root:Environmental:Aquatic:Freshwater:Lake 1.0 species Limnolyngbya circumcreta root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -12698,12 +12897,12 @@ phylum Synergistetes root:Host-associated:Mammals:Digestive system:Fecal 10.0 phylum Synergistetes root:Host-associated:Human:Digestive system:Oral:Saliva 20.0 phylum Synergistetes root:Host-associated:Birds:Digestive system:Fecal 8.0 phylum Synergistetes root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 4.0 -phylum Synergistetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 73.0 +phylum Synergistetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 76.0 phylum Synergistetes root:Environmental:Aquatic:Marine 4.0 phylum Synergistetes root:Host-associated:Mammals:Digestive system 7.0 phylum Synergistetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Synergistetes root:Environmental:Terrestrial:Soil:Forest soil 1.0 -phylum Synergistetes root:Host-associated:Human 7.0 +phylum Synergistetes root:Host-associated:Human 8.0 phylum Synergistetes root:Host-associated:Plants 2.0 phylum Synergistetes root:Host-associated:Human:Digestive system:Large intestine 4.0 phylum Synergistetes root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -12719,15 +12918,17 @@ phylum Synergistetes root:Engineered:Food production:Fermented beverages 4.0 phylum Synergistetes root:Engineered:Wastewater 5.0 phylum Synergistetes root:Host-associated:Human:Reproductive system:Vagina 12.0 phylum Synergistetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -phylum Synergistetes root:Host-associated:Human:Digestive system:Oral 46.0 +phylum Synergistetes root:Host-associated:Human:Digestive system:Oral 47.0 phylum Synergistetes root:Engineered:Food production:Dairy products 1.0 phylum Synergistetes root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Synergistetes root:Environmental:Terrestrial:Soil 4.0 phylum Synergistetes root:Environmental:Aquatic:Marine:Sediment 5.0 phylum Synergistetes root:Environmental:Aquatic:Sediment 1.0 phylum Synergistetes root:Environmental:Aquatic 1.0 +phylum Synergistetes root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Synergistetes root:Engineered:Biogas plant:Wet fermentation 10.0 -phylum Synergistetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 +phylum Synergistetes root:Engineered:Lab enrichment 3.0 +phylum Synergistetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 phylum Synergistetes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 phylum Synergistetes root:Host-associated:Birds:Digestive system:Ceca 5.0 phylum Synergistetes root:Host-associated:Human:Digestive system 8.0 @@ -12737,16 +12938,16 @@ phylum Synergistetes root:Environmental:Aquatic:Marine:Intertidal zone:Coral ree phylum Synergistetes root:Engineered:Solid waste:Composting 2.0 phylum Synergistetes root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 phylum Synergistetes root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -phylum Synergistetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 +phylum Synergistetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 phylum Synergistetes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Synergistetes root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum Synergistetes root:Engineered:Lab enrichment:Defined media 2.0 phylum Synergistetes root:Engineered:Food production 2.0 phylum Synergistetes root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Synergistetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 -phylum Synergistetes root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +phylum Synergistetes root:Host-associated:Mammals:Digestive system:Large intestine 2.0 phylum Synergistetes root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 -phylum Synergistetes root:Engineered:Food production:Fermented seafood 1.0 +phylum Synergistetes root:Engineered:Food production:Fermented seafood 2.0 phylum Synergistetes root:Engineered:Wastewater:Industrial wastewater 6.0 phylum Synergistetes root:Engineered:Modeled 1.0 phylum Synergistetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -12757,11 +12958,11 @@ phylum Synergistetes root:Engineered:Bioreactor:Continuous culture 5.0 phylum Synergistetes root:Host-associated:Human:Reproductive system:Female 1.0 phylum Synergistetes root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 phylum Synergistetes root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -phylum Synergistetes root:Engineered:Wastewater:Water and sludge 7.0 +phylum Synergistetes root:Engineered:Wastewater:Water and sludge 8.0 phylum Synergistetes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 phylum Synergistetes root:Host-associated:Mammals:Gastrointestinal tract 1.0 +phylum Synergistetes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Synergistetes root:Host-associated:Insecta 2.0 -phylum Synergistetes root:Engineered:Lab enrichment 3.0 phylum Synergistetes root:Host-associated:Animal:Digestive system:Fecal 2.0 phylum Synergistetes root:Engineered:Solid waste:Landfill 1.0 phylum Synergistetes root:Engineered:Biogas plant 9.0 @@ -12776,60 +12977,65 @@ phylum Synergistetes root:Host-associated:Mammals:Digestive system:Large intesti phylum Synergistetes root:Engineered:Biotransformation 1.0 phylum Synergistetes root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 phylum Synergistetes root:Environmental:Terrestrial:Oil reservoir 1.0 +phylum Synergistetes root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Synergistetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 phylum Synergistetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 phylum Synergistetes root:Host-associated:Human:Circulatory system:Blood 1.0 phylum Synergistetes root:Engineered:Solid waste:Composting:Bioreactor 1.0 phylum Synergistetes root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 +phylum Synergistetes root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Synergistetes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 phylum Synergistetes root:Engineered:Solid waste:Solid animal waste 1.0 phylum Synergistetes root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 phylum Synergistetes root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Lake 6.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Sediment 7.0 -phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Fecal 41.0 -phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Fecal 42.0 +phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 phylum Spirochaetes root:Host-associated:Birds:Digestive system:Fecal 7.0 phylum Spirochaetes root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 4.0 -phylum Spirochaetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 34.0 +phylum Spirochaetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 37.0 phylum Spirochaetes root:Environmental:Aquatic:Marine 20.0 phylum Spirochaetes root:Host-associated:Fish 1.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Oceanic 1.0 -phylum Spirochaetes root:Host-associated:Mammals:Digestive system 22.0 +phylum Spirochaetes root:Host-associated:Mammals:Digestive system 24.0 phylum Spirochaetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 phylum Spirochaetes root:Environmental:Terrestrial:Geologic 1.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Forest soil 1.0 -phylum Spirochaetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 -phylum Spirochaetes root:Host-associated:Human 11.0 +phylum Spirochaetes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 9.0 +phylum Spirochaetes root:Host-associated:Human 12.0 phylum Spirochaetes root:Host-associated:Plants 1.0 phylum Spirochaetes root:Environmental:Aquatic:Estuary:Sediment 2.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Large intestine 5.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Agricultural 3.0 phylum Spirochaetes root:Engineered:Bioreactor 31.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 -phylum Spirochaetes root:Engineered:Wastewater:Activated Sludge 51.0 +phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 9.0 +phylum Spirochaetes root:Engineered:Wastewater:Activated Sludge 52.0 phylum Spirochaetes root:Host-associated:Human:Skin 5.0 -phylum Spirochaetes root:Mixed 10.0 +phylum Spirochaetes root:Mixed 12.0 phylum Spirochaetes root:Host-associated:Mammals 6.0 phylum Spirochaetes root:Engineered:Food production:Fermented beverages 7.0 phylum Spirochaetes root:Engineered:Wastewater 11.0 phylum Spirochaetes root:Host-associated:Human:Reproductive system:Vagina 4.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral 59.0 -phylum Spirochaetes root:Engineered:Food production:Dairy products 3.0 +phylum Spirochaetes root:Engineered:Food production:Dairy products 4.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Contaminated 2.0 phylum Spirochaetes root:Host-associated:Plants:Phylloplane 1.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil 10.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Sediment 34.0 phylum Spirochaetes root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +phylum Spirochaetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 phylum Spirochaetes root:Environmental:Aquatic:Sediment 11.0 phylum Spirochaetes root:Environmental:Aquatic 5.0 +phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Midgut 3.0 phylum Spirochaetes root:Engineered:Biogas plant:Wet fermentation 8.0 phylum Spirochaetes root:Host-associated:Porifera 4.0 -phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 29.0 +phylum Spirochaetes root:Engineered:Lab enrichment 3.0 +phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 30.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Wetlands 2.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Grasslands 1.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 @@ -12847,7 +13053,7 @@ phylum Spirochaetes root:Environmental:Terrestrial:Soil:Desert 2.0 phylum Spirochaetes root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 28.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 -phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 +phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 phylum Spirochaetes root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum Spirochaetes root:Engineered:Lab enrichment:Defined media 3.0 phylum Spirochaetes root:Host-associated:Plants:Root 2.0 @@ -12857,6 +13063,7 @@ phylum Spirochaetes root:Host-associated:Birds:Digestive system:Digestive tube:C phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Large intestine 4.0 phylum Spirochaetes root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 +phylum Spirochaetes root:Engineered:Food production:Fermented seafood 1.0 phylum Spirochaetes root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 phylum Spirochaetes root:Host-associated:Animal:Digestive system 2.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -12865,8 +13072,7 @@ phylum Spirochaetes root:Engineered:Modeled 3.0 phylum Spirochaetes root:Host-associated:Insecta:Digestive system 1.0 phylum Spirochaetes root:Host-associated 4.0 phylum Spirochaetes root:Host-associated:Mollusca 1.0 -phylum Spirochaetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Spirochaetes root:Host-associated:Fish:Digestive system 2.0 +phylum Spirochaetes root:Host-associated:Fish:Digestive system 3.0 phylum Spirochaetes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 phylum Spirochaetes root:Environmental:Terrestrial:Soil:Sand 1.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 @@ -12882,15 +13088,16 @@ phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Groundwater 3.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Pelagic 2.0 phylum Spirochaetes root:Engineered:Wastewater:Water and sludge 9.0 +phylum Spirochaetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Spirochaetes root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 phylum Spirochaetes root:Host-associated:Mammals:Gastrointestinal tract 4.0 +phylum Spirochaetes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Spirochaetes root:Host-associated:Fish:Digestive system:Intestine 3.0 phylum Spirochaetes root:Host-associated:Insecta 1.0 phylum Spirochaetes root:Engineered:Built environment 1.0 phylum Spirochaetes root:Host-associated:Birds:Digestive system 4.0 -phylum Spirochaetes root:Engineered:Lab enrichment 3.0 phylum Spirochaetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 phylum Spirochaetes root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 2.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -12909,7 +13116,6 @@ phylum Spirochaetes root:Environmental:Aquatic:Aquaculture 1.0 phylum Spirochaetes root:Host-associated:Fish:Skin 1.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Spirochaetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 -phylum Spirochaetes root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Spirochaetes root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 phylum Spirochaetes root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 @@ -12937,19 +13143,19 @@ phylum Spirochaetes root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreacto phylum Tenericutes root:Environmental:Aquatic:Freshwater:Lake 2.0 phylum Tenericutes root:Environmental:Aquatic:Freshwater:Pond 3.0 phylum Tenericutes root:Environmental:Aquatic:Freshwater:Sediment 2.0 -phylum Tenericutes root:Host-associated:Mammals:Digestive system:Fecal 52.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system:Fecal 53.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 phylum Tenericutes root:Host-associated:Birds:Digestive system:Fecal 12.0 -phylum Tenericutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 144.0 -phylum Tenericutes root:Environmental:Aquatic:Marine 29.0 +phylum Tenericutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 148.0 +phylum Tenericutes root:Environmental:Aquatic:Marine 30.0 phylum Tenericutes root:Host-associated:Fish 2.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Oceanic 2.0 -phylum Tenericutes root:Host-associated:Mammals:Digestive system 25.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system 26.0 phylum Tenericutes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Tenericutes root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 -phylum Tenericutes root:Host-associated:Human 15.0 +phylum Tenericutes root:Host-associated:Human 16.0 phylum Tenericutes root:Host-associated:Plants 4.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Large intestine 8.0 phylum Tenericutes root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -12957,10 +13163,10 @@ phylum Tenericutes root:Engineered:Bioreactor 24.0 phylum Tenericutes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Tenericutes root:Engineered:Wastewater:Activated Sludge 7.0 phylum Tenericutes root:Host-associated:Human:Skin 3.0 -phylum Tenericutes root:Mixed 4.0 +phylum Tenericutes root:Mixed 5.0 phylum Tenericutes root:Host-associated:Mammals 10.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Intestine 2.0 -phylum Tenericutes root:Engineered:Food production:Fermented beverages 6.0 +phylum Tenericutes root:Engineered:Food production:Fermented beverages 7.0 phylum Tenericutes root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Tenericutes root:Engineered:Wastewater 6.0 phylum Tenericutes root:Host-associated:Human:Reproductive system:Vagina 15.0 @@ -12974,12 +13180,14 @@ phylum Tenericutes root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 phylum Tenericutes root:Environmental:Terrestrial:Soil 8.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Sediment 7.0 phylum Tenericutes root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +phylum Tenericutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 phylum Tenericutes root:Environmental:Aquatic:Freshwater:Lotic 2.0 phylum Tenericutes root:Environmental:Aquatic:Sediment 5.0 phylum Tenericutes root:Environmental:Aquatic 2.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system:Midgut 5.0 phylum Tenericutes root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 phylum Tenericutes root:Engineered:Biogas plant:Wet fermentation 5.0 -phylum Tenericutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 24.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 25.0 phylum Tenericutes root:Environmental:Terrestrial:Soil:Grasslands 2.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 phylum Tenericutes root:Host-associated:Birds:Digestive system:Ceca 8.0 @@ -12990,7 +13198,7 @@ phylum Tenericutes root:Environmental:Aquatic:Marine:Coastal 7.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Cold seeps 1.0 phylum Tenericutes root:Engineered:Solid waste:Composting 5.0 phylum Tenericutes root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 4.0 -phylum Tenericutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 52.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 53.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 9.0 phylum Tenericutes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 phylum Tenericutes root:Host-associated:Arthropoda:Digestive system:Gut 2.0 @@ -13000,6 +13208,7 @@ phylum Tenericutes root:Engineered:Food production 3.0 phylum Tenericutes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 phylum Tenericutes root:Host-associated:Mammals:Digestive system:Large intestine 12.0 phylum Tenericutes root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 +phylum Tenericutes root:Engineered:Food production:Fermented seafood 1.0 phylum Tenericutes root:Environmental:Aquatic:Estuary 13.0 phylum Tenericutes root:Host-associated:Animal:Digestive system 5.0 phylum Tenericutes root:Engineered:Wastewater:Industrial wastewater 3.0 @@ -13007,8 +13216,7 @@ phylum Tenericutes root:Engineered:Modeled 1.0 phylum Tenericutes root:Host-associated:Insecta:Digestive system 3.0 phylum Tenericutes root:Host-associated 8.0 phylum Tenericutes root:Host-associated:Mollusca 2.0 -phylum Tenericutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -phylum Tenericutes root:Host-associated:Fish:Digestive system 2.0 +phylum Tenericutes root:Host-associated:Fish:Digestive system 3.0 phylum Tenericutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 phylum Tenericutes root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -13021,6 +13229,7 @@ phylum Tenericutes root:Environmental:Aquatic:Freshwater:Lotic:Low land river sy phylum Tenericutes root:Environmental:Aquatic:Freshwater:Groundwater 4.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Pelagic 1.0 phylum Tenericutes root:Engineered:Wastewater:Water and sludge 4.0 +phylum Tenericutes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Tenericutes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -13030,7 +13239,7 @@ phylum Tenericutes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contami phylum Tenericutes root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 phylum Tenericutes root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum Tenericutes root:Host-associated:Reptile:Oral cavity 1.0 -phylum Tenericutes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +phylum Tenericutes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Tenericutes root:Host-associated:Fish:Digestive system:Intestine 2.0 phylum Tenericutes root:Host-associated:Insecta 1.0 phylum Tenericutes root:Engineered:Built environment 3.0 @@ -13051,7 +13260,6 @@ phylum Tenericutes root:Environmental:Aquatic:Aquaculture 2.0 phylum Tenericutes root:Host-associated:Fish:Skin 1.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 phylum Tenericutes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -phylum Tenericutes root:Host-associated:Mammals:Digestive system:Midgut 2.0 phylum Tenericutes root:Host-associated:Human:Digestive system:Oral:Throat 1.0 phylum Tenericutes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 phylum Tenericutes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 @@ -13061,6 +13269,7 @@ phylum Tenericutes root:Engineered:Biotransformation:Mixed alcohol bioreactor 3. phylum Tenericutes root:Host-associated:Mammals:Skin 1.0 phylum Tenericutes root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 phylum Tenericutes root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +phylum Tenericutes root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Tenericutes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 phylum Tenericutes root:Host-associated:Birds:Respiratory system 2.0 phylum Tenericutes root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 @@ -13082,30 +13291,33 @@ phylum Tenericutes root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor phylum Balneolaeota root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Balneolaeota root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Balneolaeota root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Balneolaeota root:Environmental:Aquatic:Marine 52.0 +phylum Balneolaeota root:Environmental:Aquatic:Marine 57.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Oceanic 8.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 phylum Balneolaeota root:Host-associated:Plants 1.0 phylum Balneolaeota root:Environmental:Aquatic:Estuary:Sediment 1.0 phylum Balneolaeota root:Engineered:Bioreactor 2.0 +phylum Balneolaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Balneolaeota root:Host-associated:Human:Digestive system:Oral 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Sediment 3.0 phylum Balneolaeota root:Environmental:Aquatic:Sediment 2.0 +phylum Balneolaeota root:Host-associated:Mammals:Digestive system:Midgut 1.0 +phylum Balneolaeota root:Engineered:Lab enrichment 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 4.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Coastal 16.0 phylum Balneolaeota root:Engineered:Solid waste:Composting 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 phylum Balneolaeota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +phylum Balneolaeota root:Engineered:Food production:Fermented seafood 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Brackish 2.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 phylum Balneolaeota root:Environmental:Aquatic:Marine:Pelagic 1.0 phylum Balneolaeota root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -phylum Balneolaeota root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 phylum Balneolaeota root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -phylum Balneolaeota root:Engineered:Lab enrichment 1.0 +phylum Balneolaeota root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 phylum Balneolaeota root:Engineered:Food production:Fermented vegetables 1.0 phylum Balneolaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 5.0 phylum Balneolaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 @@ -13119,7 +13331,7 @@ phylum Balneolaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Sa phylum Balneolaeota root:Host-associated:Algae:Brown Algae 1.0 phylum Balneolaeota root:Host-associated:Invertebrates:Cnidaria 1.0 phylum Deferribacteres root:Environmental:Aquatic:Freshwater:Lake 1.0 -phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Fecal 15.0 +phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Fecal 16.0 phylum Deferribacteres root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Deferribacteres root:Host-associated:Birds:Digestive system:Fecal 4.0 phylum Deferribacteres root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 @@ -13130,6 +13342,8 @@ phylum Deferribacteres root:Host-associated:Mammals 2.0 phylum Deferribacteres root:Host-associated:Human:Digestive system:Oral 5.0 phylum Deferribacteres root:Engineered:Food production:Dairy products 1.0 phylum Deferribacteres root:Environmental:Aquatic:Marine:Sediment 1.0 +phylum Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Deferribacteres root:Host-associated:Birds:Digestive system:Ceca 3.0 phylum Deferribacteres root:Host-associated:Human:Digestive system 2.0 phylum Deferribacteres root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 @@ -13137,10 +13351,9 @@ phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Large intes phylum Deferribacteres root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 phylum Deferribacteres root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Deferribacteres root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Large intestine 7.0 +phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Large intestine 8.0 phylum Deferribacteres root:Host-associated:Animal:Digestive system 3.0 phylum Deferribacteres root:Host-associated:Insecta:Digestive system 1.0 -phylum Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 phylum Deferribacteres root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract 1.0 @@ -13151,28 +13364,29 @@ phylum Deferribacteres root:Host-associated:Mammals:Digestive system:Large intes phylum Deferribacteres root:Host-associated:Mammals:Skin 1.0 phylum Deferribacteres root:Environmental:Terrestrial:Oil reservoir 1.0 phylum Deferribacteres root:Host-associated:Mammals:Milk 1.0 +phylum Deferribacteres root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Lake 11.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Pond 3.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Sediment 16.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Fecal 70.0 -class Bacteroidia root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Fecal 73.0 +class Bacteroidia root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 class Bacteroidia root:Host-associated:Birds:Digestive system:Fecal 13.0 class Bacteroidia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 class Bacteroidia root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Bacteroidia root:Host-associated:Human:Digestive system:Large intestine:Fecal 209.0 -class Bacteroidia root:Environmental:Aquatic:Marine 103.0 +class Bacteroidia root:Host-associated:Human:Digestive system:Large intestine:Fecal 220.0 +class Bacteroidia root:Environmental:Aquatic:Marine 106.0 class Bacteroidia root:Host-associated:Fish 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oceanic 11.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system 35.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system 37.0 class Bacteroidia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Bacteroidia root:Environmental:Aquatic:Lentic:Brackish 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 14.0 -class Bacteroidia root:Host-associated:Human 20.0 +class Bacteroidia root:Host-associated:Human 21.0 class Bacteroidia root:Host-associated:Plants 6.0 class Bacteroidia root:Environmental:Aquatic:Estuary:Sediment 5.0 -class Bacteroidia root:Host-associated:Human:Digestive system:Large intestine 16.0 +class Bacteroidia root:Host-associated:Human:Digestive system:Large intestine 17.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Agricultural 4.0 class Bacteroidia root:Engineered:Bioreactor 39.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 @@ -13180,16 +13394,16 @@ class Bacteroidia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 16.0 class Bacteroidia root:Engineered:Wastewater:Activated Sludge 53.0 class Bacteroidia root:Host-associated:Human:Skin 23.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Permafrost 6.0 -class Bacteroidia root:Mixed 15.0 -class Bacteroidia root:Host-associated:Mammals 11.0 +class Bacteroidia root:Mixed 17.0 +class Bacteroidia root:Host-associated:Mammals 12.0 class Bacteroidia root:Host-associated:Amphibia 3.0 -class Bacteroidia root:Host-associated:Human:Digestive system:Intestine 3.0 +class Bacteroidia root:Host-associated:Human:Digestive system:Intestine 4.0 class Bacteroidia root:Engineered:Food production:Fermented beverages 8.0 class Bacteroidia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Bacteroidia root:Engineered:Wastewater 19.0 class Bacteroidia root:Host-associated:Human:Reproductive system:Vagina 15.0 class Bacteroidia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 -class Bacteroidia root:Host-associated:Human:Digestive system:Oral 62.0 +class Bacteroidia root:Host-associated:Human:Digestive system:Oral 63.0 class Bacteroidia root:Engineered:Food production:Dairy products 15.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Contaminated 7.0 class Bacteroidia root:Host-associated:Plants:Phylloplane 3.0 @@ -13197,18 +13411,22 @@ class Bacteroidia root:Host-associated:Plants:Rhizosphere 4.0 class Bacteroidia root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 class Bacteroidia root:Environmental:Terrestrial:Soil 33.0 class Bacteroidia root:Environmental:Aquatic:Marine:Sediment 64.0 -class Bacteroidia root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 +class Bacteroidia root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +class Bacteroidia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 class Bacteroidia root:Environmental:Aquatic:Sediment 22.0 class Bacteroidia root:Environmental:Aquatic 4.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Midgut 6.0 class Bacteroidia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Bacteroidia root:Engineered:Biogas plant:Wet fermentation 8.0 class Bacteroidia root:Host-associated:Porifera 1.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +class Bacteroidia root:Engineered:Lab enrichment 7.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Wetlands 5.0 class Bacteroidia root:Engineered:Lab Synthesis 1.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Grasslands 3.0 class Bacteroidia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 class Bacteroidia root:Host-associated:Birds:Digestive system:Ceca 10.0 +class Bacteroidia root:Host-associated:Plants:Rhizosphere:Soil 5.0 class Bacteroidia root:Host-associated:Human:Digestive system 37.0 class Bacteroidia root:Environmental:Aquatic:Freshwater 6.0 class Bacteroidia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -13220,10 +13438,10 @@ class Bacteroidia root:Engineered:Solid waste:Composting 9.0 class Bacteroidia root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Desert 1.0 class Bacteroidia root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 60.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 class Bacteroidia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 class Bacteroidia root:Host-associated:Algae:Red algae 4.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 class Bacteroidia root:Host-associated:Arthropoda:Digestive system:Gut 5.0 class Bacteroidia root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class Bacteroidia root:Engineered:Lab enrichment:Defined media 6.0 @@ -13234,9 +13452,9 @@ class Bacteroidia root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Bacteroidia root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Bacteroidia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 11.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -class Bacteroidia root:Host-associated:Plants:Rhizosphere:Soil 5.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Large intestine 15.0 class Bacteroidia root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 +class Bacteroidia root:Engineered:Food production:Fermented seafood 1.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Lentic 2.0 class Bacteroidia root:Environmental:Aquatic:Estuary 3.0 class Bacteroidia root:Engineered:Modeled:Simulated communities (sequence read mixture) 7.0 @@ -13244,10 +13462,9 @@ class Bacteroidia root:Host-associated:Animal:Digestive system 6.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Bacteroidia root:Engineered:Wastewater:Industrial wastewater 12.0 class Bacteroidia root:Engineered:Modeled 2.0 -class Bacteroidia root:Host-associated:Insecta:Digestive system 5.0 +class Bacteroidia root:Host-associated:Insecta:Digestive system 6.0 class Bacteroidia root:Host-associated 7.0 -class Bacteroidia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -class Bacteroidia root:Host-associated:Fish:Digestive system 2.0 +class Bacteroidia root:Host-associated:Fish:Digestive system 3.0 class Bacteroidia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Sand 3.0 class Bacteroidia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 @@ -13259,13 +13476,15 @@ class Bacteroidia root:Engineered:Bioreactor:Continuous culture 8.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 class Bacteroidia root:Host-associated:Human:Reproductive system:Female 2.0 class Bacteroidia root:Engineered:Solid waste 1.0 -class Bacteroidia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +class Bacteroidia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 class Bacteroidia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Groundwater 4.0 class Bacteroidia root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 +class Bacteroidia root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Pelagic 7.0 -class Bacteroidia root:Engineered:Wastewater:Water and sludge 16.0 -class Bacteroidia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Bacteroidia root:Engineered:Wastewater:Water and sludge 18.0 +class Bacteroidia root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Bacteroidia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Bacteroidia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 class Bacteroidia root:Environmental:Aquatic:Marine:Intertidal zone 2.0 class Bacteroidia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -13276,13 +13495,13 @@ class Bacteroidia root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainag class Bacteroidia root:Host-associated:Mammals:Gastrointestinal tract 5.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oceanic:Benthic 9.0 class Bacteroidia root:Host-associated:Birds:Digestive system:Digestive tube 1.0 +class Bacteroidia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Bacteroidia root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Bacteroidia root:Host-associated:Fish:Digestive system:Intestine 2.0 -class Bacteroidia root:Host-associated:Insecta 5.0 +class Bacteroidia root:Host-associated:Insecta 6.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -class Bacteroidia root:Engineered:Built environment 9.0 +class Bacteroidia root:Engineered:Built environment 10.0 class Bacteroidia root:Host-associated:Birds:Digestive system 7.0 -class Bacteroidia root:Engineered:Lab enrichment 7.0 class Bacteroidia root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 class Bacteroidia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -13307,24 +13526,25 @@ class Bacteroidia root:Host-associated:Fish:Skin 1.0 class Bacteroidia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Bacteroidia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -class Bacteroidia root:Host-associated:Mammals:Digestive system:Midgut 3.0 class Bacteroidia root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Bacteroidia root:Host-associated:Arthropoda 2.0 class Bacteroidia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 -class Bacteroidia root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +class Bacteroidia root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 class Bacteroidia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Bacteroidia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 class Bacteroidia root:Host-associated:Human:Respiratory system 4.0 class Bacteroidia root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Bacteroidia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Bacteroidia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 class Bacteroidia root:Engineered:Biotransformation 2.0 class Bacteroidia root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 -class Bacteroidia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +class Bacteroidia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 class Bacteroidia root:Host-associated:Mammals:Skin 3.0 class Bacteroidia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Bacteroidia root:Environmental:Terrestrial:Oil reservoir 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Bacteroidia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +class Bacteroidia root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Bacteroidia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 class Bacteroidia root:Host-associated:Birds:Respiratory system 2.0 class Bacteroidia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 @@ -13348,35 +13568,36 @@ class Bacteroidia root:Environmental:Aquatic:Marine:Volcanic 1.0 class Bacteroidia root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Bacteroidia root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 class Bacteroidia root:Host-associated:Mammals:Milk 1.0 +class Bacteroidia root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Bacteroidia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Bacteroidia root:Engineered:Solid waste:Solid animal waste 1.0 class Bacteroidia root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Bacteroidia root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 class Clostridia root:Environmental:Aquatic:Freshwater:Lake 9.0 class Clostridia root:Environmental:Aquatic:Freshwater:Pond 2.0 -class Clostridia root:Environmental:Aquatic:Freshwater:Sediment 18.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Fecal 72.0 -class Clostridia root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +class Clostridia root:Environmental:Aquatic:Freshwater:Sediment 19.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Fecal 75.0 +class Clostridia root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 class Clostridia root:Host-associated:Birds:Digestive system:Fecal 13.0 class Clostridia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 class Clostridia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Clostridia root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Clostridia root:Host-associated:Human:Digestive system:Large intestine:Fecal 213.0 -class Clostridia root:Environmental:Aquatic:Marine 41.0 +class Clostridia root:Host-associated:Human:Digestive system:Large intestine:Fecal 224.0 +class Clostridia root:Environmental:Aquatic:Marine 42.0 class Clostridia root:Host-associated:Fish 2.0 class Clostridia root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 class Clostridia root:Environmental:Aquatic:Marine:Oceanic 2.0 -class Clostridia root:Host-associated:Mammals:Digestive system 35.0 -class Clostridia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 15.0 +class Clostridia root:Host-associated:Mammals:Digestive system 37.0 +class Clostridia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 16.0 class Clostridia root:Environmental:Terrestrial:Geologic 2.0 class Clostridia root:Environmental:Terrestrial:Soil:Forest soil 2.0 class Clostridia root:Environmental:Aquatic:Lentic:Brackish 1.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 5.0 -class Clostridia root:Host-associated:Human 18.0 +class Clostridia root:Host-associated:Human 19.0 class Clostridia root:Host-associated:Plants 12.0 class Clostridia root:Environmental:Aquatic:Estuary:Sediment 5.0 class Clostridia root:Engineered:Food production:Silage fermentation 1.0 -class Clostridia root:Host-associated:Human:Digestive system:Large intestine 15.0 +class Clostridia root:Host-associated:Human:Digestive system:Large intestine 16.0 class Clostridia root:Environmental:Terrestrial:Soil:Agricultural 13.0 class Clostridia root:Engineered:Bioreactor 61.0 class Clostridia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 @@ -13384,39 +13605,43 @@ class Clostridia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 class Clostridia root:Engineered:Wastewater:Activated Sludge 68.0 class Clostridia root:Host-associated:Human:Skin 23.0 class Clostridia root:Environmental:Terrestrial:Soil:Permafrost 4.0 -class Clostridia root:Mixed 12.0 -class Clostridia root:Host-associated:Mammals 13.0 +class Clostridia root:Mixed 14.0 +class Clostridia root:Host-associated:Mammals 14.0 class Clostridia root:Host-associated:Amphibia 4.0 -class Clostridia root:Host-associated:Human:Digestive system:Intestine 3.0 -class Clostridia root:Engineered:Food production:Fermented beverages 9.0 +class Clostridia root:Host-associated:Human:Digestive system:Intestine 4.0 +class Clostridia root:Engineered:Food production:Fermented beverages 10.0 class Clostridia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Clostridia root:Engineered:Wastewater 20.0 class Clostridia root:Host-associated:Human:Reproductive system:Vagina 16.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 -class Clostridia root:Host-associated:Human:Digestive system:Oral 62.0 -class Clostridia root:Engineered:Food production:Dairy products 24.0 +class Clostridia root:Host-associated:Human:Digestive system:Oral 63.0 +class Clostridia root:Engineered:Food production:Dairy products 25.0 class Clostridia root:Environmental:Terrestrial:Soil:Contaminated 7.0 class Clostridia root:Host-associated:Plants:Phylloplane 5.0 class Clostridia root:Environmental:Terrestrial:Soil:Silt 1.0 class Clostridia root:Host-associated:Plants:Rhizosphere 4.0 -class Clostridia root:Environmental:Aquatic:Marine:Coastal:Sediment 9.0 +class Clostridia root:Environmental:Aquatic:Marine:Coastal:Sediment 10.0 class Clostridia root:Environmental:Terrestrial:Soil 58.0 class Clostridia root:Environmental:Aquatic:Marine:Sediment 62.0 -class Clostridia root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +class Clostridia root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +class Clostridia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 class Clostridia root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Clostridia root:Environmental:Aquatic:Sediment 15.0 class Clostridia root:Environmental:Aquatic 3.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Midgut 6.0 class Clostridia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Clostridia root:Engineered:Biogas plant:Wet fermentation 11.0 class Clostridia root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Clostridia root:Host-associated:Porifera 3.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +class Clostridia root:Engineered:Lab enrichment 8.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 class Clostridia root:Environmental:Terrestrial:Soil:Wetlands 5.0 class Clostridia root:Engineered:Lab Synthesis 1.0 class Clostridia root:Environmental:Terrestrial:Soil:Grasslands 2.0 class Clostridia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 class Clostridia root:Host-associated:Birds:Digestive system:Ceca 10.0 class Clostridia root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Clostridia root:Host-associated:Plants:Rhizosphere:Soil 6.0 class Clostridia root:Host-associated:Human:Digestive system 39.0 class Clostridia root:Environmental:Aquatic:Freshwater 5.0 class Clostridia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -13430,9 +13655,9 @@ class Clostridia root:Host-associated:Human:Respiratory system:Pulmonary system: class Clostridia root:Environmental:Aquatic:Freshwater:Drinking water 2.0 class Clostridia root:Environmental:Terrestrial:Soil:Desert 4.0 class Clostridia root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 62.0 class Clostridia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 class Clostridia root:Host-associated:Arthropoda:Digestive system:Gut 5.0 class Clostridia root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Clostridia root:Engineered:Lab enrichment:Defined media 11.0 @@ -13443,10 +13668,9 @@ class Clostridia root:Environmental:Terrestrial:Deep subsurface 1.0 class Clostridia root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 3.0 class Clostridia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 10.0 class Clostridia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 13.0 -class Clostridia root:Host-associated:Plants:Rhizosphere:Soil 6.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Large intestine 15.0 class Clostridia root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 -class Clostridia root:Engineered:Food production:Fermented seafood 2.0 +class Clostridia root:Engineered:Food production:Fermented seafood 3.0 class Clostridia root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Clostridia root:Environmental:Aquatic:Estuary 7.0 class Clostridia root:Host-associated:Human:Skin:Naris 1.0 @@ -13455,11 +13679,10 @@ class Clostridia root:Host-associated:Animal:Digestive system 6.0 class Clostridia root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 class Clostridia root:Engineered:Wastewater:Industrial wastewater 13.0 class Clostridia root:Engineered:Modeled 4.0 -class Clostridia root:Host-associated:Insecta:Digestive system 6.0 +class Clostridia root:Host-associated:Insecta:Digestive system 7.0 class Clostridia root:Host-associated 6.0 class Clostridia root:Host-associated:Mollusca 1.0 -class Clostridia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -class Clostridia root:Host-associated:Fish:Digestive system 2.0 +class Clostridia root:Host-associated:Fish:Digestive system 3.0 class Clostridia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 class Clostridia root:Environmental:Terrestrial:Soil:Sand 3.0 class Clostridia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 @@ -13471,12 +13694,13 @@ class Clostridia root:Engineered:Bioreactor:Continuous culture 10.0 class Clostridia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 class Clostridia root:Host-associated:Human:Reproductive system:Female 2.0 class Clostridia root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -class Clostridia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +class Clostridia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 class Clostridia root:Environmental:Aquatic:Thermal springs:Sediment 2.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 -class Clostridia root:Environmental:Aquatic:Freshwater:Groundwater 9.0 +class Clostridia root:Environmental:Aquatic:Freshwater:Groundwater 10.0 class Clostridia root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -class Clostridia root:Engineered:Wastewater:Water and sludge 21.0 +class Clostridia root:Engineered:Wastewater:Water and sludge 23.0 +class Clostridia root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 class Clostridia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone 2.0 class Clostridia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -13486,16 +13710,15 @@ class Clostridia root:Host-associated:Mammals:Gastrointestinal tract 5.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 class Clostridia root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 class Clostridia root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -class Clostridia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Clostridia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Clostridia root:Environmental:Aquatic:Freshwater:Ice 1.0 class Clostridia root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Clostridia root:Host-associated:Fish:Digestive system:Intestine 3.0 -class Clostridia root:Host-associated:Insecta 7.0 -class Clostridia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +class Clostridia root:Host-associated:Insecta 8.0 +class Clostridia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 class Clostridia root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -class Clostridia root:Engineered:Built environment 7.0 +class Clostridia root:Engineered:Built environment 8.0 class Clostridia root:Host-associated:Birds:Digestive system 7.0 -class Clostridia root:Engineered:Lab enrichment 8.0 class Clostridia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Clostridia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 class Clostridia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -13519,7 +13742,6 @@ class Clostridia root:Environmental:Aquatic:Aquaculture 1.0 class Clostridia root:Host-associated:Fish:Skin 1.0 class Clostridia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Clostridia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 4.0 -class Clostridia root:Host-associated:Mammals:Digestive system:Midgut 3.0 class Clostridia root:Environmental:Air 1.0 class Clostridia root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Clostridia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -13529,16 +13751,18 @@ class Clostridia root:Engineered:Bioremediation 1.0 class Clostridia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 3.0 class Clostridia root:Host-associated:Human:Respiratory system 4.0 class Clostridia root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Clostridia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Clostridia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 class Clostridia root:Engineered:Biotransformation 3.0 class Clostridia root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 class Clostridia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Clostridia root:Host-associated:Mammals:Skin 3.0 -class Clostridia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +class Clostridia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 class Clostridia root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Clostridia root:Environmental:Terrestrial:Oil reservoir 1.0 class Clostridia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Clostridia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +class Clostridia root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Clostridia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 class Clostridia root:Host-associated:Birds:Respiratory system 2.0 class Clostridia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 @@ -13557,6 +13781,7 @@ class Clostridia root:Host-associated:Mammals:Nervous system:Brain 1.0 class Clostridia root:Environmental:Terrestrial:Volcanic 2.0 class Clostridia root:Host-associated:Human:Respiratory system:Pulmonary system 3.0 class Clostridia root:Environmental:Aquatic:Marine:Wetlands 1.0 +class Clostridia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Clostridia root:Host-associated:Invertebrates 1.0 class Clostridia root:Host-associated:Mammals:Excretory system 1.0 class Clostridia root:Host-associated:Annelida:Digestive system 1.0 @@ -13567,6 +13792,7 @@ class Clostridia root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 class Clostridia root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 class Clostridia root:Environmental:Terrestrial:Agricultural field 1.0 class Clostridia root:Host-associated:Mammals:Milk 1.0 +class Clostridia root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Clostridia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Clostridia root:Engineered:Solid waste:Solid animal waste 1.0 class Clostridia root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 @@ -13574,7 +13800,7 @@ class Clostridia root:Host-associated:Spiralia 1.0 class Clostridia root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Clostridia root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 class Methanomicrobia root:Environmental:Aquatic:Freshwater:Lake 4.0 -class Methanomicrobia root:Environmental:Aquatic:Freshwater:Sediment 13.0 +class Methanomicrobia root:Environmental:Aquatic:Freshwater:Sediment 14.0 class Methanomicrobia root:Host-associated:Mammals:Digestive system:Fecal 5.0 class Methanomicrobia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 4.0 class Methanomicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -13602,9 +13828,10 @@ class Methanomicrobia root:Host-associated:Plants:Rhizosphere 2.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 class Methanomicrobia root:Environmental:Aquatic:Freshwater:Wetlands 1.0 class Methanomicrobia root:Environmental:Terrestrial:Soil 15.0 -class Methanomicrobia root:Environmental:Aquatic:Marine:Sediment 34.0 +class Methanomicrobia root:Environmental:Aquatic:Marine:Sediment 35.0 class Methanomicrobia root:Environmental:Aquatic:Sediment 5.0 class Methanomicrobia root:Engineered:Biogas plant:Wet fermentation 6.0 +class Methanomicrobia root:Engineered:Lab enrichment 2.0 class Methanomicrobia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 class Methanomicrobia root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Methanomicrobia root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -13618,7 +13845,7 @@ class Methanomicrobia root:Environmental:Aquatic:Marine:Cold seeps 5.0 class Methanomicrobia root:Engineered:Solid waste:Composting 1.0 class Methanomicrobia root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 class Methanomicrobia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 -class Methanomicrobia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +class Methanomicrobia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Methanomicrobia root:Engineered:Lab enrichment:Defined media 1.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -13643,9 +13870,9 @@ class Methanomicrobia root:Engineered:Wastewater:Water and sludge 7.0 class Methanomicrobia root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +class Methanomicrobia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Methanomicrobia root:Environmental:Terrestrial:Soil:Crop 1.0 class Methanomicrobia root:Host-associated:Birds:Digestive system 1.0 -class Methanomicrobia root:Engineered:Lab enrichment 2.0 class Methanomicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Methanomicrobia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 class Methanomicrobia root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -13670,8 +13897,8 @@ class Methanomicrobia root:Engineered:Solid waste:Solid animal waste 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Lake 3.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Pond 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Sediment 3.0 -class Epsilonproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 15.0 -class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 8.0 +class Epsilonproteobacteria root:Host-associated:Mammals:Digestive system:Fecal 16.0 +class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 9.0 class Epsilonproteobacteria root:Host-associated:Birds:Digestive system:Fecal 3.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine 44.0 @@ -13697,7 +13924,7 @@ class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Intestin class Epsilonproteobacteria root:Engineered:Food production:Fermented beverages 1.0 class Epsilonproteobacteria root:Engineered:Wastewater 8.0 class Epsilonproteobacteria root:Host-associated:Human:Reproductive system:Vagina 2.0 -class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 +class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Oral 32.0 class Epsilonproteobacteria root:Engineered:Food production:Dairy products 1.0 class Epsilonproteobacteria root:Host-associated:Plants:Phylloplane 1.0 @@ -13706,14 +13933,17 @@ class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 7 class Epsilonproteobacteria root:Environmental:Terrestrial:Soil 7.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Sediment 39.0 class Epsilonproteobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Epsilonproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Sediment 6.0 class Epsilonproteobacteria root:Environmental:Aquatic 3.0 class Epsilonproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Epsilonproteobacteria root:Host-associated:Porifera 3.0 +class Epsilonproteobacteria root:Engineered:Lab enrichment 3.0 class Epsilonproteobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 class Epsilonproteobacteria root:Host-associated:Birds:Digestive system:Ceca 3.0 +class Epsilonproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system 4.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater 3.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 6.0 @@ -13731,7 +13961,6 @@ class Epsilonproteobacteria root:Engineered:Food production 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Epsilonproteobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -class Epsilonproteobacteria root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Epsilonproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine 4.0 class Epsilonproteobacteria root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 class Epsilonproteobacteria root:Host-associated:Animal:Digestive system 1.0 @@ -13741,7 +13970,6 @@ class Epsilonproteobacteria root:Engineered:Modeled 3.0 class Epsilonproteobacteria root:Host-associated 1.0 class Epsilonproteobacteria root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class Epsilonproteobacteria root:Host-associated:Mollusca 5.0 -class Epsilonproteobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Epsilonproteobacteria root:Environmental:Terrestrial:Soil:Sand 2.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -13756,7 +13984,8 @@ class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Groundwater 5. class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Pelagic 5.0 -class Epsilonproteobacteria root:Engineered:Wastewater:Water and sludge 5.0 +class Epsilonproteobacteria root:Engineered:Wastewater:Water and sludge 6.0 +class Epsilonproteobacteria root:Engineered:Lab enrichment:Defined media:Marine media 1.0 class Epsilonproteobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 class Epsilonproteobacteria root:Host-associated:Invertebrates:Echinodermata 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 @@ -13765,7 +13994,6 @@ class Epsilonproteobacteria root:Engineered:Bioremediation:Terephthalate:Wastewa class Epsilonproteobacteria root:Host-associated:Fish:Digestive system:Intestine 1.0 class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Epsilonproteobacteria root:Engineered:Built environment 1.0 -class Epsilonproteobacteria root:Engineered:Lab enrichment 3.0 class Epsilonproteobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 class Epsilonproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -13785,9 +14013,10 @@ class Epsilonproteobacteria root:Environmental:Aquatic:Non-marine Saline and Alk class Epsilonproteobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Epsilonproteobacteria root:Engineered:Bioremediation 2.0 class Epsilonproteobacteria root:Host-associated:Human:Respiratory system 2.0 +class Epsilonproteobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Epsilonproteobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 class Epsilonproteobacteria root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -class Epsilonproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +class Epsilonproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 class Epsilonproteobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 class Epsilonproteobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Epsilonproteobacteria root:Host-associated:Mollusca:Digestive system 1.0 @@ -13801,33 +14030,37 @@ class Epsilonproteobacteria root:Environmental:Aquatic:Marine:Wetlands 1.0 class Epsilonproteobacteria root:Host-associated:Mollusca:Digestive system:Glands 1.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Lake 2.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Sediment 2.0 -class Spirochaetia root:Host-associated:Mammals:Digestive system:Fecal 32.0 +class Spirochaetia root:Host-associated:Mammals:Digestive system:Fecal 33.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 class Spirochaetia root:Host-associated:Birds:Digestive system:Fecal 5.0 -class Spirochaetia root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +class Spirochaetia root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 class Spirochaetia root:Environmental:Aquatic:Marine 8.0 class Spirochaetia root:Host-associated:Fish 1.0 class Spirochaetia root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -class Spirochaetia root:Host-associated:Mammals:Digestive system 12.0 +class Spirochaetia root:Host-associated:Mammals:Digestive system 14.0 class Spirochaetia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 -class Spirochaetia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 +class Spirochaetia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 class Spirochaetia root:Environmental:Aquatic:Estuary:Sediment 2.0 class Spirochaetia root:Host-associated:Human:Digestive system:Large intestine 1.0 class Spirochaetia root:Engineered:Bioreactor 19.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 class Spirochaetia root:Engineered:Wastewater:Activated Sludge 29.0 -class Spirochaetia root:Mixed 5.0 +class Spirochaetia root:Mixed 6.0 class Spirochaetia root:Host-associated:Mammals 5.0 class Spirochaetia root:Engineered:Food production:Fermented beverages 1.0 class Spirochaetia root:Engineered:Wastewater 3.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral 17.0 +class Spirochaetia root:Engineered:Food production:Dairy products 1.0 class Spirochaetia root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 class Spirochaetia root:Environmental:Terrestrial:Soil 1.0 class Spirochaetia root:Environmental:Aquatic:Marine:Sediment 21.0 +class Spirochaetia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Spirochaetia root:Environmental:Aquatic:Sediment 4.0 +class Spirochaetia root:Host-associated:Mammals:Digestive system:Midgut 3.0 class Spirochaetia root:Engineered:Biogas plant:Wet fermentation 3.0 class Spirochaetia root:Host-associated:Porifera 3.0 -class Spirochaetia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 +class Spirochaetia root:Engineered:Lab enrichment 1.0 +class Spirochaetia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 10.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 class Spirochaetia root:Host-associated:Birds:Digestive system:Ceca 1.0 class Spirochaetia root:Host-associated:Human:Digestive system 2.0 @@ -13840,7 +14073,7 @@ class Spirochaetia root:Host-associated:Human:Respiratory system:Pulmonary syste class Spirochaetia root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 class Spirochaetia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 12.0 -class Spirochaetia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +class Spirochaetia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 class Spirochaetia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Spirochaetia root:Engineered:Lab enrichment:Defined media 1.0 class Spirochaetia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 @@ -13848,13 +14081,13 @@ class Spirochaetia root:Environmental:Terrestrial:Deep subsurface 1.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 class Spirochaetia root:Host-associated:Mammals:Digestive system:Large intestine 4.0 class Spirochaetia root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 +class Spirochaetia root:Engineered:Food production:Fermented seafood 1.0 class Spirochaetia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Spirochaetia root:Host-associated:Animal:Digestive system 1.0 class Spirochaetia root:Engineered:Wastewater:Industrial wastewater 1.0 class Spirochaetia root:Host-associated 1.0 class Spirochaetia root:Host-associated:Mollusca 1.0 -class Spirochaetia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -class Spirochaetia root:Host-associated:Fish:Digestive system 1.0 +class Spirochaetia root:Host-associated:Fish:Digestive system 2.0 class Spirochaetia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 class Spirochaetia root:Environmental:Terrestrial:Soil:Sand 1.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 3.0 @@ -13864,9 +14097,9 @@ class Spirochaetia root:Engineered:Bioreactor:Continuous culture 1.0 class Spirochaetia root:Environmental:Aquatic:Thermal springs:Sediment 1.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class Spirochaetia root:Host-associated:Mammals:Gastrointestinal tract 4.0 +class Spirochaetia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Spirochaetia root:Host-associated:Fish:Digestive system:Intestine 2.0 class Spirochaetia root:Host-associated:Birds:Digestive system 2.0 -class Spirochaetia root:Engineered:Lab enrichment 1.0 class Spirochaetia root:Host-associated:Animal:Digestive system:Fecal 2.0 class Spirochaetia root:Engineered:Solid waste:Landfill 1.0 class Spirochaetia root:Engineered:Biogas plant 4.0 @@ -13875,7 +14108,6 @@ class Spirochaetia root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 class Spirochaetia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 class Spirochaetia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 class Spirochaetia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -class Spirochaetia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 class Spirochaetia root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 class Spirochaetia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -13900,7 +14132,8 @@ class Synergistia root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Synergistia root:Environmental:Aquatic:Marine:Sediment 2.0 class Synergistia root:Environmental:Aquatic 1.0 class Synergistia root:Engineered:Biogas plant:Wet fermentation 8.0 -class Synergistia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 +class Synergistia root:Engineered:Lab enrichment 1.0 +class Synergistia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 class Synergistia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 class Synergistia root:Host-associated:Birds:Digestive system:Ceca 2.0 class Synergistia root:Host-associated:Human:Digestive system 1.0 @@ -13912,14 +14145,15 @@ class Synergistia root:Host-associated:Human:Digestive system:Oral:Subgingival p class Synergistia root:Engineered:Lab enrichment:Defined media 1.0 class Synergistia root:Environmental:Terrestrial:Deep subsurface 1.0 class Synergistia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +class Synergistia root:Engineered:Food production:Fermented seafood 1.0 class Synergistia root:Engineered:Wastewater:Industrial wastewater 2.0 class Synergistia root:Environmental:Terrestrial:Soil:Sand 1.0 class Synergistia root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class Synergistia root:Engineered:Bioreactor:Continuous culture 4.0 class Synergistia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 class Synergistia root:Engineered:Wastewater:Water and sludge 4.0 +class Synergistia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Synergistia root:Host-associated:Insecta 1.0 -class Synergistia root:Engineered:Lab enrichment 1.0 class Synergistia root:Engineered:Biogas plant 7.0 class Synergistia root:Host-associated:Birds 1.0 class Synergistia root:Engineered 1.0 @@ -13931,26 +14165,26 @@ class Synergistia root:Engineered:Solid waste:Solid animal waste 1.0 class Synergistia root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Lake 7.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Pond 2.0 -order Clostridiales root:Environmental:Aquatic:Freshwater:Sediment 18.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Fecal 72.0 -order Clostridiales root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +order Clostridiales root:Environmental:Aquatic:Freshwater:Sediment 19.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Fecal 75.0 +order Clostridiales root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 order Clostridiales root:Host-associated:Birds:Digestive system:Fecal 13.0 order Clostridiales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 order Clostridiales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -order Clostridiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 212.0 +order Clostridiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 223.0 order Clostridiales root:Environmental:Aquatic:Marine 31.0 order Clostridiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 7.0 order Clostridiales root:Environmental:Aquatic:Marine:Oceanic 1.0 -order Clostridiales root:Host-associated:Mammals:Digestive system 35.0 +order Clostridiales root:Host-associated:Mammals:Digestive system 37.0 order Clostridiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 9.0 order Clostridiales root:Environmental:Terrestrial:Soil:Forest soil 2.0 order Clostridiales root:Environmental:Aquatic:Lentic:Brackish 1.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 -order Clostridiales root:Host-associated:Human 16.0 +order Clostridiales root:Host-associated:Human 17.0 order Clostridiales root:Host-associated:Plants 6.0 order Clostridiales root:Environmental:Aquatic:Estuary:Sediment 4.0 -order Clostridiales root:Host-associated:Human:Digestive system:Large intestine 15.0 +order Clostridiales root:Host-associated:Human:Digestive system:Large intestine 16.0 order Clostridiales root:Environmental:Terrestrial:Soil:Agricultural 12.0 order Clostridiales root:Engineered:Bioreactor 59.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 @@ -13958,37 +14192,41 @@ order Clostridiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 14.0 order Clostridiales root:Engineered:Wastewater:Activated Sludge 66.0 order Clostridiales root:Host-associated:Human:Skin 15.0 order Clostridiales root:Environmental:Terrestrial:Soil:Permafrost 5.0 -order Clostridiales root:Mixed 9.0 -order Clostridiales root:Host-associated:Mammals 12.0 +order Clostridiales root:Mixed 11.0 +order Clostridiales root:Host-associated:Mammals 13.0 order Clostridiales root:Host-associated:Amphibia 1.0 -order Clostridiales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Clostridiales root:Host-associated:Human:Digestive system:Intestine 4.0 order Clostridiales root:Engineered:Food production:Fermented beverages 8.0 order Clostridiales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Clostridiales root:Engineered:Wastewater 19.0 order Clostridiales root:Host-associated:Human:Reproductive system:Vagina 16.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 -order Clostridiales root:Host-associated:Human:Digestive system:Oral 47.0 +order Clostridiales root:Host-associated:Human:Digestive system:Oral 48.0 order Clostridiales root:Engineered:Food production:Dairy products 16.0 order Clostridiales root:Environmental:Terrestrial:Soil:Contaminated 5.0 order Clostridiales root:Host-associated:Plants:Phylloplane 1.0 order Clostridiales root:Environmental:Terrestrial:Soil:Silt 1.0 order Clostridiales root:Host-associated:Plants:Rhizosphere 4.0 -order Clostridiales root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 +order Clostridiales root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 order Clostridiales root:Environmental:Terrestrial:Soil 51.0 order Clostridiales root:Environmental:Aquatic:Marine:Sediment 57.0 -order Clostridiales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +order Clostridiales root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +order Clostridiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Lotic 2.0 order Clostridiales root:Environmental:Aquatic:Sediment 15.0 order Clostridiales root:Environmental:Aquatic 3.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Midgut 6.0 order Clostridiales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 order Clostridiales root:Engineered:Biogas plant:Wet fermentation 11.0 order Clostridiales root:Host-associated:Porifera 2.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +order Clostridiales root:Engineered:Lab enrichment 6.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 order Clostridiales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Clostridiales root:Environmental:Terrestrial:Soil:Grasslands 2.0 order Clostridiales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 order Clostridiales root:Host-associated:Birds:Digestive system:Ceca 10.0 order Clostridiales root:Host-associated:Mammals:Digestive system:Stomach 1.0 +order Clostridiales root:Host-associated:Plants:Rhizosphere:Soil 5.0 order Clostridiales root:Host-associated:Human:Digestive system 37.0 order Clostridiales root:Environmental:Aquatic:Freshwater 4.0 order Clostridiales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 @@ -14000,9 +14238,9 @@ order Clostridiales root:Engineered:Solid waste:Composting 12.0 order Clostridiales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 6.0 order Clostridiales root:Environmental:Terrestrial:Soil:Desert 2.0 order Clostridiales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 60.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 61.0 order Clostridiales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 11.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 order Clostridiales root:Host-associated:Arthropoda:Digestive system:Gut 4.0 order Clostridiales root:Engineered:Lab enrichment:Defined media 11.0 order Clostridiales root:Host-associated:Plants:Root 1.0 @@ -14012,10 +14250,9 @@ order Clostridiales root:Environmental:Terrestrial:Deep subsurface 1.0 order Clostridiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 order Clostridiales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -order Clostridiales root:Host-associated:Plants:Rhizosphere:Soil 5.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Large intestine 15.0 order Clostridiales root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 -order Clostridiales root:Engineered:Food production:Fermented seafood 2.0 +order Clostridiales root:Engineered:Food production:Fermented seafood 3.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Clostridiales root:Environmental:Aquatic:Estuary 8.0 order Clostridiales root:Engineered:Modeled:Simulated communities (sequence read mixture) 8.0 @@ -14025,8 +14262,7 @@ order Clostridiales root:Engineered:Wastewater:Industrial wastewater 10.0 order Clostridiales root:Engineered:Modeled 3.0 order Clostridiales root:Host-associated:Insecta:Digestive system 3.0 order Clostridiales root:Host-associated 6.0 -order Clostridiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -order Clostridiales root:Host-associated:Fish:Digestive system 2.0 +order Clostridiales root:Host-associated:Fish:Digestive system 3.0 order Clostridiales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 order Clostridiales root:Environmental:Terrestrial:Soil:Sand 3.0 order Clostridiales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 2.0 @@ -14038,12 +14274,13 @@ order Clostridiales root:Engineered:Bioreactor:Continuous culture 10.0 order Clostridiales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 order Clostridiales root:Host-associated:Human:Reproductive system:Female 2.0 order Clostridiales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -order Clostridiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +order Clostridiales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 order Clostridiales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 -order Clostridiales root:Environmental:Aquatic:Freshwater:Groundwater 9.0 +order Clostridiales root:Environmental:Aquatic:Freshwater:Groundwater 10.0 order Clostridiales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -order Clostridiales root:Engineered:Wastewater:Water and sludge 18.0 +order Clostridiales root:Engineered:Wastewater:Water and sludge 19.0 +order Clostridiales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Clostridiales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 order Clostridiales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -14053,16 +14290,15 @@ order Clostridiales root:Host-associated:Mammals:Gastrointestinal tract 5.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Clostridiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 order Clostridiales root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -order Clostridiales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Clostridiales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Clostridiales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Clostridiales root:Host-associated:Fish:Digestive system:Intestine 3.0 -order Clostridiales root:Host-associated:Insecta 5.0 -order Clostridiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +order Clostridiales root:Host-associated:Insecta 6.0 +order Clostridiales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 2.0 order Clostridiales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Clostridiales root:Engineered:Built environment 6.0 order Clostridiales root:Host-associated:Birds:Digestive system 7.0 -order Clostridiales root:Engineered:Lab enrichment 6.0 order Clostridiales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Clostridiales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 order Clostridiales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -14086,24 +14322,25 @@ order Clostridiales root:Environmental:Aquatic:Aquaculture 1.0 order Clostridiales root:Host-associated:Fish:Skin 1.0 order Clostridiales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 order Clostridiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -order Clostridiales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Clostridiales root:Environmental:Aquatic:Freshwater:Storm water 1.0 order Clostridiales root:Environmental:Air 1.0 -order Clostridiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +order Clostridiales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Clostridiales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 order Clostridiales root:Engineered:Bioremediation 1.0 order Clostridiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 order Clostridiales root:Host-associated:Human:Respiratory system 3.0 order Clostridiales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +order Clostridiales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Clostridiales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 order Clostridiales root:Engineered:Biotransformation 2.0 order Clostridiales root:Engineered:Biotransformation:Mixed alcohol bioreactor 3.0 order Clostridiales root:Host-associated:Mammals:Skin 3.0 -order Clostridiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Clostridiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 order Clostridiales root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 order Clostridiales root:Environmental:Terrestrial:Oil reservoir 1.0 order Clostridiales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Clostridiales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +order Clostridiales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Clostridiales root:Environmental:Terrestrial:Soil:Mine drainage 1.0 order Clostridiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 2.0 order Clostridiales root:Host-associated:Birds:Respiratory system 2.0 @@ -14120,6 +14357,7 @@ order Clostridiales root:Host-associated:Mammals:Nervous system:Brain 1.0 order Clostridiales root:Environmental:Terrestrial:Volcanic 2.0 order Clostridiales root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 order Clostridiales root:Environmental:Aquatic:Marine:Wetlands 1.0 +order Clostridiales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Clostridiales root:Host-associated:Mammals:Excretory system 1.0 order Clostridiales root:Host-associated:Annelida:Digestive system 1.0 order Clostridiales root:Host-associated:Algae:Brown Algae 1.0 @@ -14127,6 +14365,7 @@ order Clostridiales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90 order Clostridiales root:Environmental:Aquatic:Marine:Oil seeps 1.0 order Clostridiales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 order Clostridiales root:Host-associated:Mammals:Milk 1.0 +order Clostridiales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Clostridiales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 order Clostridiales root:Engineered:Solid waste:Solid animal waste 1.0 order Clostridiales root:Host-associated:Spiralia 1.0 @@ -14149,11 +14388,12 @@ order Desulfuromonadales root:Mixed 1.0 order Desulfuromonadales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 order Desulfuromonadales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Desulfuromonadales root:Host-associated:Plants:Rhizosphere 1.0 -order Desulfuromonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 +order Desulfuromonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 9.0 order Desulfuromonadales root:Environmental:Terrestrial:Soil 21.0 order Desulfuromonadales root:Environmental:Aquatic:Marine:Sediment 29.0 order Desulfuromonadales root:Environmental:Aquatic:Sediment 6.0 order Desulfuromonadales root:Environmental:Aquatic 1.0 +order Desulfuromonadales root:Engineered:Lab enrichment 3.0 order Desulfuromonadales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Desulfuromonadales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Desulfuromonadales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -14180,7 +14420,6 @@ order Desulfuromonadales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Desulfuromonadales root:Host-associated:Invertebrates:Echinodermata 1.0 order Desulfuromonadales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Desulfuromonadales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Desulfuromonadales root:Engineered:Lab enrichment 3.0 order Desulfuromonadales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Desulfuromonadales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Desulfuromonadales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -14208,7 +14447,7 @@ order Desulfobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 order Desulfobacterales root:Environmental:Aquatic:Marine:Oceanic 2.0 order Desulfobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 order Desulfobacterales root:Environmental:Terrestrial:Geologic 1.0 -order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 13.0 +order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 14.0 order Desulfobacterales root:Host-associated:Plants 1.0 order Desulfobacterales root:Environmental:Aquatic:Estuary:Sediment 9.0 order Desulfobacterales root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -14220,17 +14459,18 @@ order Desulfobacterales root:Engineered:Wastewater:Activated Sludge 4.0 order Desulfobacterales root:Environmental:Terrestrial:Soil:Permafrost 2.0 order Desulfobacterales root:Mixed 2.0 order Desulfobacterales root:Engineered:Food production:Fermented beverages 1.0 -order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 +order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 9.0 order Desulfobacterales root:Engineered:Food production:Dairy products 1.0 order Desulfobacterales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Desulfobacterales root:Host-associated:Plants:Rhizosphere 3.0 -order Desulfobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 24.0 +order Desulfobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 25.0 order Desulfobacterales root:Environmental:Terrestrial:Soil 8.0 -order Desulfobacterales root:Environmental:Aquatic:Marine:Sediment 105.0 +order Desulfobacterales root:Environmental:Aquatic:Marine:Sediment 108.0 order Desulfobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Desulfobacterales root:Environmental:Aquatic:Sediment 10.0 order Desulfobacterales root:Environmental:Aquatic 3.0 order Desulfobacterales root:Host-associated:Porifera 1.0 +order Desulfobacterales root:Engineered:Lab enrichment 3.0 order Desulfobacterales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Desulfobacterales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Desulfobacterales root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -14266,7 +14506,6 @@ order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-co order Desulfobacterales root:Environmental:Aquatic:Marine:Oceanic:Benthic 8.0 order Desulfobacterales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Desulfobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Desulfobacterales root:Engineered:Lab enrichment 3.0 order Desulfobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 order Desulfobacterales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 order Desulfobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -14294,39 +14533,39 @@ order Desulfobacterales root:Host-associated:Annelida 1.0 order Desulfobacterales root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Lake 10.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Sediment 14.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Fecal 70.0 -order Bacteroidales root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Fecal 73.0 +order Bacteroidales root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 order Bacteroidales root:Host-associated:Birds:Digestive system:Fecal 13.0 order Bacteroidales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 6.0 order Bacteroidales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -order Bacteroidales root:Host-associated:Human:Digestive system:Large intestine:Fecal 205.0 -order Bacteroidales root:Environmental:Aquatic:Marine 23.0 +order Bacteroidales root:Host-associated:Human:Digestive system:Large intestine:Fecal 216.0 +order Bacteroidales root:Environmental:Aquatic:Marine 24.0 order Bacteroidales root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 order Bacteroidales root:Environmental:Aquatic:Marine:Oceanic 2.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system 34.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system 36.0 order Bacteroidales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Bacteroidales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 6.0 -order Bacteroidales root:Host-associated:Human 18.0 +order Bacteroidales root:Host-associated:Human 19.0 order Bacteroidales root:Host-associated:Plants 4.0 order Bacteroidales root:Environmental:Aquatic:Estuary:Sediment 4.0 -order Bacteroidales root:Host-associated:Human:Digestive system:Large intestine 14.0 +order Bacteroidales root:Host-associated:Human:Digestive system:Large intestine 15.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Agricultural 3.0 order Bacteroidales root:Engineered:Bioreactor 36.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 13.0 order Bacteroidales root:Engineered:Wastewater:Activated Sludge 53.0 order Bacteroidales root:Host-associated:Human:Skin 11.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Permafrost 5.0 -order Bacteroidales root:Mixed 10.0 -order Bacteroidales root:Host-associated:Mammals 9.0 +order Bacteroidales root:Mixed 12.0 +order Bacteroidales root:Host-associated:Mammals 10.0 order Bacteroidales root:Host-associated:Amphibia 3.0 -order Bacteroidales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Bacteroidales root:Host-associated:Human:Digestive system:Intestine 4.0 order Bacteroidales root:Engineered:Food production:Fermented beverages 7.0 order Bacteroidales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Bacteroidales root:Engineered:Wastewater 18.0 order Bacteroidales root:Host-associated:Human:Reproductive system:Vagina 15.0 order Bacteroidales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 -order Bacteroidales root:Host-associated:Human:Digestive system:Oral 61.0 +order Bacteroidales root:Host-associated:Human:Digestive system:Oral 62.0 order Bacteroidales root:Engineered:Food production:Dairy products 8.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Contaminated 4.0 order Bacteroidales root:Host-associated:Plants:Phylloplane 1.0 @@ -14334,15 +14573,19 @@ order Bacteroidales root:Host-associated:Plants:Rhizosphere 4.0 order Bacteroidales root:Environmental:Aquatic:Marine:Coastal:Sediment 13.0 order Bacteroidales root:Environmental:Terrestrial:Soil 27.0 order Bacteroidales root:Environmental:Aquatic:Marine:Sediment 54.0 -order Bacteroidales root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +order Bacteroidales root:Engineered:Modeled:Simulated communities (microbial mixture) 6.0 +order Bacteroidales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 order Bacteroidales root:Environmental:Aquatic:Sediment 14.0 order Bacteroidales root:Environmental:Aquatic 4.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Midgut 6.0 order Bacteroidales root:Engineered:Biogas plant:Wet fermentation 8.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +order Bacteroidales root:Engineered:Lab enrichment 6.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Grasslands 3.0 order Bacteroidales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 5.0 order Bacteroidales root:Host-associated:Birds:Digestive system:Ceca 10.0 +order Bacteroidales root:Host-associated:Plants:Rhizosphere:Soil 5.0 order Bacteroidales root:Host-associated:Human:Digestive system 36.0 order Bacteroidales root:Environmental:Aquatic:Freshwater 4.0 order Bacteroidales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 @@ -14354,9 +14597,9 @@ order Bacteroidales root:Engineered:Solid waste:Composting 7.0 order Bacteroidales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Desert 1.0 order Bacteroidales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 59.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 60.0 order Bacteroidales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 order Bacteroidales root:Host-associated:Arthropoda:Digestive system:Gut 3.0 order Bacteroidales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Bacteroidales root:Engineered:Lab enrichment:Defined media 8.0 @@ -14366,9 +14609,9 @@ order Bacteroidales root:Engineered:Food production 3.0 order Bacteroidales root:Environmental:Terrestrial:Deep subsurface 1.0 order Bacteroidales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -order Bacteroidales root:Host-associated:Plants:Rhizosphere:Soil 5.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Large intestine 15.0 order Bacteroidales root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 +order Bacteroidales root:Engineered:Food production:Fermented seafood 1.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Bacteroidales root:Engineered:Modeled:Simulated communities (sequence read mixture) 5.0 order Bacteroidales root:Host-associated:Animal:Digestive system 6.0 @@ -14376,7 +14619,6 @@ order Bacteroidales root:Engineered:Wastewater:Industrial wastewater 9.0 order Bacteroidales root:Engineered:Modeled 2.0 order Bacteroidales root:Host-associated:Insecta:Digestive system 2.0 order Bacteroidales root:Host-associated 5.0 -order Bacteroidales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Bacteroidales root:Host-associated:Fish:Digestive system 2.0 order Bacteroidales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -14386,12 +14628,12 @@ order Bacteroidales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1 order Bacteroidales root:Engineered:Bioreactor:Continuous culture 7.0 order Bacteroidales root:Host-associated:Human:Reproductive system:Female 2.0 order Bacteroidales root:Engineered:Solid waste 1.0 -order Bacteroidales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +order Bacteroidales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 order Bacteroidales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Bacteroidales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 order Bacteroidales root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -order Bacteroidales root:Engineered:Wastewater:Water and sludge 14.0 +order Bacteroidales root:Engineered:Wastewater:Water and sludge 16.0 order Bacteroidales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Bacteroidales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 order Bacteroidales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 @@ -14401,13 +14643,13 @@ order Bacteroidales root:Environmental:Terrestrial 1.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Bacteroidales root:Host-associated:Mammals:Gastrointestinal tract 5.0 order Bacteroidales root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 +order Bacteroidales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Bacteroidales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Bacteroidales root:Host-associated:Fish:Digestive system:Intestine 2.0 -order Bacteroidales root:Host-associated:Insecta 3.0 +order Bacteroidales root:Host-associated:Insecta 4.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Bacteroidales root:Engineered:Built environment 3.0 order Bacteroidales root:Host-associated:Birds:Digestive system 6.0 -order Bacteroidales root:Engineered:Lab enrichment 6.0 order Bacteroidales root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 order Bacteroidales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Bacteroidales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -14431,20 +14673,21 @@ order Bacteroidales root:Environmental:Aquatic:Aquaculture 1.0 order Bacteroidales root:Host-associated:Fish:Skin 1.0 order Bacteroidales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 order Bacteroidales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -order Bacteroidales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Bacteroidales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Bacteroidales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -order Bacteroidales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +order Bacteroidales root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 order Bacteroidales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 order Bacteroidales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 order Bacteroidales root:Host-associated:Human:Respiratory system 4.0 order Bacteroidales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +order Bacteroidales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Bacteroidales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 order Bacteroidales root:Engineered:Biotransformation 1.0 order Bacteroidales root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 order Bacteroidales root:Host-associated:Mammals:Skin 2.0 order Bacteroidales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Bacteroidales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +order Bacteroidales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Bacteroidales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order Bacteroidales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 order Bacteroidales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 4.0 @@ -14461,6 +14704,7 @@ order Bacteroidales root:Host-associated:Mammals:Excretory system 1.0 order Bacteroidales root:Environmental:Aquatic:Marine:Volcanic 1.0 order Bacteroidales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 order Bacteroidales root:Host-associated:Mammals:Milk 1.0 +order Bacteroidales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Bacteroidales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 order Bacteroidales root:Engineered:Solid waste:Solid animal waste 1.0 order Bacteroidales root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 @@ -14468,10 +14712,10 @@ order Bacteroidales root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreacto order Alteromonadales root:Environmental:Aquatic:Freshwater:Lake 4.0 order Alteromonadales root:Environmental:Aquatic:Freshwater:Pond 3.0 order Alteromonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -order Alteromonadales root:Environmental:Aquatic:Marine 218.0 +order Alteromonadales root:Environmental:Aquatic:Marine 236.0 order Alteromonadales root:Host-associated:Fish 4.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic 51.0 +order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic 52.0 order Alteromonadales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 order Alteromonadales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Alteromonadales root:Environmental:Aquatic:Lentic:Brackish 2.0 @@ -14481,7 +14725,7 @@ order Alteromonadales root:Host-associated:Plants 6.0 order Alteromonadales root:Environmental:Aquatic:Estuary:Sediment 3.0 order Alteromonadales root:Environmental:Terrestrial:Soil:Agricultural 3.0 order Alteromonadales root:Engineered:Bioreactor 1.0 -order Alteromonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +order Alteromonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 order Alteromonadales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 order Alteromonadales root:Engineered:Wastewater:Activated Sludge 1.0 order Alteromonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 @@ -14495,7 +14739,7 @@ order Alteromonadales root:Host-associated:Plants:Rhizosphere 5.0 order Alteromonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 order Alteromonadales root:Environmental:Terrestrial:Soil 16.0 order Alteromonadales root:Environmental:Aquatic:Marine:Sediment 36.0 -order Alteromonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +order Alteromonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 order Alteromonadales root:Environmental:Aquatic:Sediment 2.0 order Alteromonadales root:Environmental:Aquatic 5.0 order Alteromonadales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 @@ -14510,7 +14754,7 @@ order Alteromonadales root:Engineered:Solid waste:Composting 3.0 order Alteromonadales root:Environmental:Terrestrial:Soil:Desert 4.0 order Alteromonadales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 order Alteromonadales root:Host-associated:Algae:Red algae 5.0 -order Alteromonadales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +order Alteromonadales root:Host-associated:Arthropoda:Digestive system:Gut 3.0 order Alteromonadales root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 order Alteromonadales root:Engineered:Food production 4.0 @@ -14526,23 +14770,25 @@ order Alteromonadales root:Host-associated:Insecta:Digestive system 1.0 order Alteromonadales root:Host-associated 3.0 order Alteromonadales root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 order Alteromonadales root:Host-associated:Mollusca 5.0 +order Alteromonadales root:Host-associated:Fish:Digestive system 1.0 order Alteromonadales root:Environmental:Terrestrial:Soil:Sand 3.0 order Alteromonadales root:Environmental:Aquatic:Marine:Brackish 8.0 order Alteromonadales root:Host-associated:Fish:Digestive system:Foregut 2.0 -order Alteromonadales root:Engineered:Bioreactor:Continuous culture 2.0 +order Alteromonadales root:Engineered:Bioreactor:Continuous culture 3.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 7.0 order Alteromonadales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Alteromonadales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 4.0 order Alteromonadales root:Environmental:Aquatic:Freshwater:Groundwater 7.0 -order Alteromonadales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +order Alteromonadales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 order Alteromonadales root:Environmental:Aquatic:Marine:Pelagic 10.0 order Alteromonadales root:Engineered:Wastewater:Water and sludge 2.0 +order Alteromonadales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Alteromonadales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Alteromonadales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 order Alteromonadales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Alteromonadales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 -order Alteromonadales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Alteromonadales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Alteromonadales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Alteromonadales root:Host-associated:Insecta 1.0 @@ -14563,7 +14809,7 @@ order Alteromonadales root:Environmental:Aquatic:Marine:Intertidal zone:Microbia order Alteromonadales root:Host-associated:Arthropoda 1.0 order Alteromonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 order Alteromonadales root:Host-associated:Mammals:Skin 1.0 -order Alteromonadales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Alteromonadales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 order Alteromonadales root:Environmental:Terrestrial:Oil reservoir 1.0 order Alteromonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 order Alteromonadales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 @@ -14585,11 +14831,11 @@ order Alteromonadales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated order Alteromonadales root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Pseudomonadales root:Environmental:Aquatic:Freshwater:Sediment 12.0 +order Pseudomonadales root:Environmental:Aquatic:Freshwater:Sediment 13.0 order Pseudomonadales root:Host-associated:Mammals:Digestive system:Fecal 11.0 order Pseudomonadales root:Host-associated:Birds:Digestive system:Fecal 3.0 order Pseudomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 27.0 -order Pseudomonadales root:Environmental:Aquatic:Marine 75.0 +order Pseudomonadales root:Environmental:Aquatic:Marine 91.0 order Pseudomonadales root:Host-associated:Fish 5.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Oceanic 12.0 @@ -14599,33 +14845,33 @@ order Pseudomonadales root:Environmental:Terrestrial:Geologic 3.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Forest soil 2.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 order Pseudomonadales root:Host-associated:Human 11.0 -order Pseudomonadales root:Host-associated:Plants 30.0 +order Pseudomonadales root:Host-associated:Plants 31.0 order Pseudomonadales root:Engineered:Food production:Silage fermentation 1.0 order Pseudomonadales root:Host-associated:Human:Digestive system:Large intestine 3.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Agricultural 9.0 order Pseudomonadales root:Engineered:Bioreactor 18.0 -order Pseudomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 +order Pseudomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 order Pseudomonadales root:Engineered:Wastewater:Activated Sludge 18.0 order Pseudomonadales root:Host-associated:Human:Skin 26.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Permafrost 1.0 -order Pseudomonadales root:Mixed 16.0 +order Pseudomonadales root:Mixed 17.0 order Pseudomonadales root:Host-associated:Mammals 11.0 order Pseudomonadales root:Host-associated:Amphibia 4.0 -order Pseudomonadales root:Engineered:Food production:Fermented beverages 7.0 +order Pseudomonadales root:Engineered:Food production:Fermented beverages 8.0 order Pseudomonadales root:Engineered:Wastewater 11.0 order Pseudomonadales root:Host-associated:Human:Reproductive system:Vagina 4.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 order Pseudomonadales root:Host-associated:Human:Digestive system:Oral 5.0 -order Pseudomonadales root:Engineered:Food production:Dairy products 23.0 +order Pseudomonadales root:Engineered:Food production:Dairy products 25.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Contaminated 6.0 order Pseudomonadales root:Host-associated:Plants:Phylloplane 11.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Silt 1.0 order Pseudomonadales root:Host-associated:Plants:Rhizosphere 16.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 -order Pseudomonadales root:Environmental:Terrestrial:Soil 59.0 -order Pseudomonadales root:Environmental:Aquatic:Marine:Sediment 40.0 -order Pseudomonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +order Pseudomonadales root:Environmental:Terrestrial:Soil 60.0 +order Pseudomonadales root:Environmental:Aquatic:Marine:Sediment 42.0 +order Pseudomonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lotic 5.0 order Pseudomonadales root:Environmental:Aquatic:Sediment 8.0 order Pseudomonadales root:Environmental:Aquatic 6.0 @@ -14633,12 +14879,14 @@ order Pseudomonadales root:Engineered:Bioreactor:Continuous culture:Marine sedim order Pseudomonadales root:Engineered:Biogas plant:Wet fermentation 1.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 order Pseudomonadales root:Host-associated:Porifera 2.0 +order Pseudomonadales root:Engineered:Lab enrichment 5.0 order Pseudomonadales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Pseudomonadales root:Engineered:Lab Synthesis 1.0 order Pseudomonadales root:Host-associated:Birds:Digestive system:Ceca 2.0 +order Pseudomonadales root:Host-associated:Plants:Rhizosphere:Soil 9.0 order Pseudomonadales root:Host-associated:Human:Digestive system 8.0 -order Pseudomonadales root:Environmental:Aquatic:Freshwater 7.0 +order Pseudomonadales root:Environmental:Aquatic:Freshwater 8.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Coastal 10.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -14660,8 +14908,7 @@ order Pseudomonadales root:Environmental:Terrestrial:Deep subsurface 2.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Pseudomonadales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -order Pseudomonadales root:Host-associated:Plants:Rhizosphere:Soil 9.0 -order Pseudomonadales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +order Pseudomonadales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 order Pseudomonadales root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 order Pseudomonadales root:Engineered:Food production:Fermented seafood 2.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -14673,10 +14920,10 @@ order Pseudomonadales root:Host-associated:Animal:Digestive system 1.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Oil-contaminated 4.0 order Pseudomonadales root:Engineered:Wastewater:Industrial wastewater 11.0 order Pseudomonadales root:Engineered:Modeled 2.0 -order Pseudomonadales root:Host-associated:Insecta:Digestive system 6.0 +order Pseudomonadales root:Host-associated:Insecta:Digestive system 7.0 order Pseudomonadales root:Host-associated 3.0 order Pseudomonadales root:Host-associated:Mollusca 2.0 -order Pseudomonadales root:Host-associated:Fish:Digestive system 1.0 +order Pseudomonadales root:Host-associated:Fish:Digestive system 2.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Mine 1.0 order Pseudomonadales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Pseudomonadales root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -14692,11 +14939,11 @@ order Pseudomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river order Pseudomonadales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -order Pseudomonadales root:Environmental:Aquatic:Freshwater:Groundwater 11.0 +order Pseudomonadales root:Environmental:Aquatic:Freshwater:Groundwater 13.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Pelagic 2.0 -order Pseudomonadales root:Engineered:Wastewater:Water and sludge 14.0 +order Pseudomonadales root:Engineered:Wastewater:Water and sludge 16.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Pseudomonadales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 order Pseudomonadales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 @@ -14706,14 +14953,14 @@ order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-cont order Pseudomonadales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Pseudomonadales root:Host-associated:Birds:Digestive system:Digestive tube 1.0 order Pseudomonadales root:Host-associated:Reptile:Oral cavity 1.0 +order Pseudomonadales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Ice 5.0 order Pseudomonadales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 -order Pseudomonadales root:Host-associated:Insecta 9.0 +order Pseudomonadales root:Host-associated:Insecta 10.0 order Pseudomonadales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Pseudomonadales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -order Pseudomonadales root:Engineered:Built environment 8.0 +order Pseudomonadales root:Engineered:Built environment 9.0 order Pseudomonadales root:Host-associated:Birds:Digestive system 1.0 -order Pseudomonadales root:Engineered:Lab enrichment 5.0 order Pseudomonadales root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Pseudomonadales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -14735,6 +14982,7 @@ order Pseudomonadales root:Environmental:Aquatic:Aquaculture 1.0 order Pseudomonadales root:Engineered:Industrial production 1.0 order Pseudomonadales root:Host-associated:Fish:Skin 1.0 order Pseudomonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +order Pseudomonadales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Pseudomonadales root:Environmental:Air 1.0 order Pseudomonadales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Pseudomonadales root:Host-associated:Arthropoda 4.0 @@ -14771,6 +15019,7 @@ order Pseudomonadales root:Engineered:Solid waste:Composting:Grass 1.0 order Pseudomonadales root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 order Pseudomonadales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 order Pseudomonadales root:Environmental:Terrestrial:Agricultural field 1.0 +order Pseudomonadales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Pseudomonadales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 order Pseudomonadales root:Host-associated:Annelida 1.0 order Pseudomonadales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 @@ -14810,30 +15059,33 @@ order Marinilabiliales root:Environmental:Aquatic:Freshwater:Groundwater:Contami order Marinilabiliales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 order Marinilabiliales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 order Marinilabiliales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 +order Marinilabiliales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Marinilabiliales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Marinilabiliales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Marinilabiliales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 order Marinilabiliales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 order Marinilabiliales root:Environmental:Aquatic:Marine:Wetlands 1.0 order Marinilabiliales root:Environmental:Aquatic:Marine:Volcanic 1.0 +order Marinilabiliales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Sediment 2.0 -order Spirochaetales root:Host-associated:Mammals:Digestive system:Fecal 35.0 +order Spirochaetales root:Host-associated:Mammals:Digestive system:Fecal 36.0 order Spirochaetales root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 order Spirochaetales root:Host-associated:Birds:Digestive system:Fecal 4.0 order Spirochaetales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 3.0 -order Spirochaetales root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -order Spirochaetales root:Environmental:Aquatic:Marine 5.0 +order Spirochaetales root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +order Spirochaetales root:Environmental:Aquatic:Marine 6.0 order Spirochaetales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -order Spirochaetales root:Host-associated:Mammals:Digestive system 12.0 +order Spirochaetales root:Host-associated:Mammals:Digestive system 14.0 order Spirochaetales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -order Spirochaetales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 +order Spirochaetales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 5.0 order Spirochaetales root:Environmental:Aquatic:Estuary:Sediment 2.0 order Spirochaetales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Spirochaetales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Spirochaetales root:Engineered:Bioreactor 20.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 order Spirochaetales root:Engineered:Wastewater:Activated Sludge 30.0 -order Spirochaetales root:Mixed 4.0 +order Spirochaetales root:Mixed 5.0 order Spirochaetales root:Host-associated:Mammals 3.0 order Spirochaetales root:Engineered:Food production:Fermented beverages 1.0 order Spirochaetales root:Engineered:Wastewater 4.0 @@ -14843,10 +15095,13 @@ order Spirochaetales root:Host-associated:Plants:Phylloplane 1.0 order Spirochaetales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 order Spirochaetales root:Environmental:Terrestrial:Soil 2.0 order Spirochaetales root:Environmental:Aquatic:Marine:Sediment 19.0 +order Spirochaetales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Spirochaetales root:Environmental:Aquatic:Sediment 4.0 +order Spirochaetales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Spirochaetales root:Engineered:Biogas plant:Wet fermentation 6.0 order Spirochaetales root:Host-associated:Porifera 4.0 -order Spirochaetales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 23.0 +order Spirochaetales root:Engineered:Lab enrichment 2.0 +order Spirochaetales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 24.0 order Spirochaetales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Spirochaetales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 order Spirochaetales root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -14860,7 +15115,7 @@ order Spirochaetales root:Environmental:Terrestrial:Soil:Desert 1.0 order Spirochaetales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 order Spirochaetales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 16.0 order Spirochaetales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 9.0 -order Spirochaetales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +order Spirochaetales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 order Spirochaetales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Spirochaetales root:Engineered:Lab enrichment:Defined media 2.0 order Spirochaetales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -14868,13 +15123,13 @@ order Spirochaetales root:Environmental:Terrestrial:Deep subsurface 1.0 order Spirochaetales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 order Spirochaetales root:Host-associated:Mammals:Digestive system:Large intestine 4.0 +order Spirochaetales root:Engineered:Food production:Fermented seafood 1.0 order Spirochaetales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Spirochaetales root:Host-associated:Animal:Digestive system 1.0 order Spirochaetales root:Engineered:Wastewater:Industrial wastewater 3.0 order Spirochaetales root:Host-associated 3.0 order Spirochaetales root:Host-associated:Mollusca 1.0 -order Spirochaetales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -order Spirochaetales root:Host-associated:Fish:Digestive system 1.0 +order Spirochaetales root:Host-associated:Fish:Digestive system 2.0 order Spirochaetales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 order Spirochaetales root:Environmental:Terrestrial:Soil:Sand 1.0 order Spirochaetales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 2.0 @@ -14884,9 +15139,9 @@ order Spirochaetales root:Engineered:Bioreactor:Continuous culture 2.0 order Spirochaetales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Spirochaetales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 order Spirochaetales root:Host-associated:Mammals:Gastrointestinal tract 4.0 +order Spirochaetales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Spirochaetales root:Host-associated:Insecta 1.0 order Spirochaetales root:Host-associated:Birds:Digestive system 2.0 -order Spirochaetales root:Engineered:Lab enrichment 2.0 order Spirochaetales root:Host-associated:Animal:Digestive system:Fecal 2.0 order Spirochaetales root:Engineered:Solid waste:Landfill 1.0 order Spirochaetales root:Engineered:Biogas plant 5.0 @@ -14894,7 +15149,6 @@ order Spirochaetales root:Host-associated:Reptile 1.0 order Spirochaetales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 order Spirochaetales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 order Spirochaetales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -order Spirochaetales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 order Spirochaetales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Spirochaetales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -14907,30 +15161,32 @@ order Chromatiales root:Environmental:Aquatic:Freshwater:Lake 4.0 order Chromatiales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Chromatiales root:Environmental:Aquatic:Freshwater:Sediment 3.0 order Chromatiales root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -order Chromatiales root:Environmental:Aquatic:Marine 38.0 +order Chromatiales root:Environmental:Aquatic:Marine 40.0 order Chromatiales root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 order Chromatiales root:Environmental:Aquatic:Marine:Oceanic 14.0 order Chromatiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 -order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 15.0 +order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 16.0 order Chromatiales root:Host-associated:Human 1.0 order Chromatiales root:Host-associated:Plants 3.0 order Chromatiales root:Environmental:Aquatic:Estuary:Sediment 9.0 order Chromatiales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Chromatiales root:Engineered:Bioreactor 6.0 +order Chromatiales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 order Chromatiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 order Chromatiales root:Engineered:Wastewater:Activated Sludge 2.0 order Chromatiales root:Environmental:Terrestrial:Soil:Permafrost 1.0 order Chromatiales root:Mixed 6.0 -order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 order Chromatiales root:Environmental:Terrestrial:Soil:Contaminated 2.0 order Chromatiales root:Host-associated:Plants:Rhizosphere 2.0 order Chromatiales root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 order Chromatiales root:Environmental:Terrestrial:Soil 14.0 -order Chromatiales root:Environmental:Aquatic:Marine:Sediment 69.0 +order Chromatiales root:Environmental:Aquatic:Marine:Sediment 70.0 order Chromatiales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Chromatiales root:Environmental:Aquatic:Sediment 10.0 order Chromatiales root:Environmental:Aquatic 4.0 order Chromatiales root:Host-associated:Porifera 10.0 +order Chromatiales root:Engineered:Lab enrichment 1.0 order Chromatiales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Chromatiales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 5.0 @@ -14940,6 +15196,7 @@ order Chromatiales root:Environmental:Aquatic:Marine:Cold seeps 6.0 order Chromatiales root:Engineered:Solid waste:Composting 1.0 order Chromatiales root:Environmental:Terrestrial:Soil:Desert 2.0 order Chromatiales root:Host-associated:Algae:Red algae 2.0 +order Chromatiales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 6.0 order Chromatiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 order Chromatiales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -14962,12 +15219,11 @@ order Chromatiales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Pelagic 2.0 order Chromatiales root:Engineered:Wastewater:Water and sludge 2.0 order Chromatiales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Chromatiales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Chromatiales root:Host-associated:Invertebrates:Echinodermata 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 -order Chromatiales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Chromatiales root:Host-associated:Insecta 1.0 -order Chromatiales root:Engineered:Lab enrichment 1.0 order Chromatiales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 order Chromatiales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 order Chromatiales root:Engineered:Solid waste:Landfill 1.0 @@ -15022,6 +15278,7 @@ order Methanosarcinales root:Environmental:Terrestrial:Soil 10.0 order Methanosarcinales root:Environmental:Aquatic:Marine:Sediment 24.0 order Methanosarcinales root:Environmental:Aquatic:Sediment 4.0 order Methanosarcinales root:Engineered:Biogas plant:Wet fermentation 4.0 +order Methanosarcinales root:Engineered:Lab enrichment 1.0 order Methanosarcinales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 order Methanosarcinales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Methanosarcinales root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -15051,7 +15308,6 @@ order Methanosarcinales root:Environmental:Terrestrial:Rock-dwelling (subaerial order Methanosarcinales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Methanosarcinales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Methanosarcinales root:Environmental:Terrestrial:Soil:Crop 1.0 -order Methanosarcinales root:Engineered:Lab enrichment 1.0 order Methanosarcinales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Methanosarcinales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 order Methanosarcinales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -15100,10 +15356,10 @@ family Desulfuromonadaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contami family Desulfuromonadaceae root:Environmental:Aquatic:Marine:Wetlands 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Sediment 12.0 +family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Sediment 13.0 family Pseudomonadaceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 family Pseudomonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 -family Pseudomonadaceae root:Environmental:Aquatic:Marine 38.0 +family Pseudomonadaceae root:Environmental:Aquatic:Marine 44.0 family Pseudomonadaceae root:Host-associated:Fish 4.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Oceanic 8.0 @@ -15113,7 +15369,7 @@ family Pseudomonadaceae root:Environmental:Terrestrial:Geologic 3.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Forest soil 3.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 family Pseudomonadaceae root:Host-associated:Human 5.0 -family Pseudomonadaceae root:Host-associated:Plants 31.0 +family Pseudomonadaceae root:Host-associated:Plants 32.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Agricultural 10.0 family Pseudomonadaceae root:Engineered:Bioreactor 7.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 @@ -15124,20 +15380,20 @@ family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Permafrost 3.0 family Pseudomonadaceae root:Mixed 10.0 family Pseudomonadaceae root:Host-associated:Mammals 4.0 family Pseudomonadaceae root:Host-associated:Amphibia 4.0 -family Pseudomonadaceae root:Engineered:Food production:Fermented beverages 3.0 +family Pseudomonadaceae root:Engineered:Food production:Fermented beverages 4.0 family Pseudomonadaceae root:Engineered:Wastewater 6.0 family Pseudomonadaceae root:Host-associated:Human:Reproductive system:Vagina 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Pseudomonadaceae root:Host-associated:Human:Digestive system:Oral 1.0 -family Pseudomonadaceae root:Engineered:Food production:Dairy products 13.0 +family Pseudomonadaceae root:Engineered:Food production:Dairy products 15.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Contaminated 7.0 family Pseudomonadaceae root:Host-associated:Plants:Phylloplane 8.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Silt 1.0 family Pseudomonadaceae root:Host-associated:Plants:Rhizosphere 20.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 -family Pseudomonadaceae root:Environmental:Terrestrial:Soil 56.0 -family Pseudomonadaceae root:Environmental:Aquatic:Marine:Sediment 31.0 -family Pseudomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 6.0 +family Pseudomonadaceae root:Environmental:Terrestrial:Soil 57.0 +family Pseudomonadaceae root:Environmental:Aquatic:Marine:Sediment 32.0 +family Pseudomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Lotic 3.0 family Pseudomonadaceae root:Environmental:Aquatic:Sediment 5.0 family Pseudomonadaceae root:Environmental:Aquatic 6.0 @@ -15145,10 +15401,12 @@ family Pseudomonadaceae root:Engineered:Bioreactor:Continuous culture:Marine sed family Pseudomonadaceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 family Pseudomonadaceae root:Host-associated:Porifera 1.0 +family Pseudomonadaceae root:Engineered:Lab enrichment 4.0 family Pseudomonadaceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 family Pseudomonadaceae root:Engineered:Lab Synthesis 1.0 +family Pseudomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Pseudomonadaceae root:Host-associated:Human:Digestive system 4.0 -family Pseudomonadaceae root:Environmental:Aquatic:Freshwater 5.0 +family Pseudomonadaceae root:Environmental:Aquatic:Freshwater 6.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Coastal 10.0 @@ -15167,7 +15425,6 @@ family Pseudomonadaceae root:Environmental:Aquatic:Marine:Oil-contaminated sedim family Pseudomonadaceae root:Engineered:Food production 5.0 family Pseudomonadaceae root:Environmental:Terrestrial:Deep subsurface 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Pseudomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Pseudomonadaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 family Pseudomonadaceae root:Engineered:Food production:Fermented seafood 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -15194,22 +15451,22 @@ family Pseudomonadaceae root:Environmental:Aquatic:Thermal springs:Near-boiling family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 8.0 +family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 9.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -family Pseudomonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +family Pseudomonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Pseudomonadaceae root:Engineered:Wastewater:Water and sludge 11.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Pseudomonadaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 family Pseudomonadaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 +family Pseudomonadaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Ice 3.0 -family Pseudomonadaceae root:Host-associated:Insecta 6.0 +family Pseudomonadaceae root:Host-associated:Insecta 7.0 family Pseudomonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Pseudomonadaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -family Pseudomonadaceae root:Engineered:Built environment 6.0 +family Pseudomonadaceae root:Engineered:Built environment 7.0 family Pseudomonadaceae root:Host-associated:Birds:Digestive system 1.0 -family Pseudomonadaceae root:Engineered:Lab enrichment 4.0 family Pseudomonadaceae root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Pseudomonadaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -15227,6 +15484,7 @@ family Pseudomonadaceae root:Engineered 5.0 family Pseudomonadaceae root:Engineered:Industrial production 1.0 family Pseudomonadaceae root:Host-associated:Fish:Skin 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +family Pseudomonadaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Pseudomonadaceae root:Host-associated:Arthropoda 1.0 family Pseudomonadaceae root:Engineered:Bioremediation 1.0 family Pseudomonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -15253,6 +15511,7 @@ family Pseudomonadaceae root:Environmental:Aquatic:Lentic 1.0 family Pseudomonadaceae root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 family Pseudomonadaceae root:Environmental:Aquatic:Marine:Wetlands 1.0 family Pseudomonadaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 +family Pseudomonadaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Pseudomonadaceae root:Host-associated:Annelida 1.0 family Pseudomonadaceae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Lake 3.0 @@ -15270,16 +15529,17 @@ family Desulfobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Desulfobacteraceae root:Engineered:Bioreactor 2.0 family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 family Desulfobacteraceae root:Mixed 3.0 -family Desulfobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 +family Desulfobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 9.0 family Desulfobacteraceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Desulfobacteraceae root:Host-associated:Plants:Rhizosphere 3.0 -family Desulfobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 21.0 +family Desulfobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 22.0 family Desulfobacteraceae root:Environmental:Terrestrial:Soil 5.0 -family Desulfobacteraceae root:Environmental:Aquatic:Marine:Sediment 94.0 +family Desulfobacteraceae root:Environmental:Aquatic:Marine:Sediment 97.0 family Desulfobacteraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Sediment 10.0 family Desulfobacteraceae root:Environmental:Aquatic 3.0 family Desulfobacteraceae root:Host-associated:Porifera 1.0 +family Desulfobacteraceae root:Engineered:Lab enrichment 2.0 family Desulfobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -15306,7 +15566,6 @@ family Desulfobacteraceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 family Desulfobacteraceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -family Desulfobacteraceae root:Engineered:Lab enrichment 2.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 family Desulfobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -15320,7 +15579,7 @@ family Desulfobacteraceae root:Environmental:Aquatic:Aquaculture 1.0 family Desulfobacteraceae root:Host-associated:Fish:Skin 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 4.0 -family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Desulfobacteraceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Desulfobacteraceae root:Environmental:Terrestrial:Oil reservoir 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Wetlands 1.0 @@ -15328,7 +15587,7 @@ family Desulfobacteraceae root:Environmental:Aquatic:Marine:Volcanic 1.0 family Desulfobacteraceae root:Environmental:Aquatic:Marine:Oil seeps 1.0 family Desulfobacteraceae root:Host-associated:Annelida 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Freshwater:Lake 4.0 -family Rhodospirillaceae root:Environmental:Aquatic:Marine 34.0 +family Rhodospirillaceae root:Environmental:Aquatic:Marine 40.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Oceanic 6.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Forest soil 14.0 @@ -15338,6 +15597,7 @@ family Rhodospirillaceae root:Host-associated:Plants 7.0 family Rhodospirillaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Agricultural 22.0 family Rhodospirillaceae root:Engineered:Bioreactor 4.0 +family Rhodospirillaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Rhodospirillaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Rhodospirillaceae root:Host-associated:Human:Skin 1.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Permafrost 3.0 @@ -15346,27 +15606,29 @@ family Rhodospirillaceae root:Engineered:Wastewater 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Rhodospirillaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 -family Rhodospirillaceae root:Host-associated:Plants:Rhizosphere 11.0 -family Rhodospirillaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +family Rhodospirillaceae root:Host-associated:Plants:Rhizosphere 12.0 +family Rhodospirillaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil 90.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Sediment 7.0 family Rhodospirillaceae root:Environmental:Aquatic:Sediment 2.0 family Rhodospirillaceae root:Environmental:Aquatic 1.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 5.0 family Rhodospirillaceae root:Host-associated:Porifera 8.0 +family Rhodospirillaceae root:Engineered:Lab enrichment 1.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Wetlands 4.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Grasslands 7.0 +family Rhodospirillaceae root:Host-associated:Plants:Rhizosphere:Soil 11.0 family Rhodospirillaceae root:Environmental:Aquatic:Freshwater 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Desert 6.0 +family Rhodospirillaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 family Rhodospirillaceae root:Engineered:Lab enrichment:Defined media 8.0 family Rhodospirillaceae root:Host-associated:Plants:Root 2.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 family Rhodospirillaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Rhodospirillaceae root:Host-associated:Plants:Rhizosphere:Soil 11.0 family Rhodospirillaceae root:Environmental:Aquatic:Estuary 1.0 family Rhodospirillaceae root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 family Rhodospirillaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 @@ -15386,13 +15648,13 @@ family Rhodospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-c family Rhodospirillaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Rhodospirillaceae root:Host-associated:Insecta 1.0 family Rhodospirillaceae root:Engineered:Built environment 1.0 -family Rhodospirillaceae root:Engineered:Lab enrichment 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 family Rhodospirillaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 family Rhodospirillaceae root:Host-associated:Plants:Rhizome 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Aquaculture 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 +family Rhodospirillaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 family Rhodospirillaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 family Rhodospirillaceae root:Engineered:Bioremediation:Hydrocarbon 1.0 @@ -15410,7 +15672,7 @@ family Rhodospirillaceae root:Host-associated:Microbial:Bacteria 1.0 family Rhodospirillaceae root:Host-associated:Spiralia 1.0 family Rhodospirillaceae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 family Geobacteraceae root:Environmental:Aquatic:Freshwater:Lake 2.0 -family Geobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 8.0 +family Geobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 9.0 family Geobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Geobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Geobacteraceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 @@ -15427,6 +15689,7 @@ family Geobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 family Geobacteraceae root:Environmental:Terrestrial:Soil 15.0 family Geobacteraceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Geobacteraceae root:Environmental:Aquatic:Sediment 3.0 +family Geobacteraceae root:Engineered:Lab enrichment 3.0 family Geobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Geobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Geobacteraceae root:Environmental:Aquatic:Freshwater 1.0 @@ -15446,7 +15709,6 @@ family Geobacteraceae root:Engineered:Solid waste 1.0 family Geobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 family Geobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Geobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -family Geobacteraceae root:Engineered:Lab enrichment 3.0 family Geobacteraceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family Geobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Geobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -15484,6 +15746,7 @@ family Methanosarcinaceae root:Environmental:Aquatic:Marine:Sediment 17.0 family Methanosarcinaceae root:Environmental:Aquatic:Sediment 1.0 family Methanosarcinaceae root:Engineered:Biogas plant:Wet fermentation 2.0 family Methanosarcinaceae root:Host-associated:Porifera 1.0 +family Methanosarcinaceae root:Engineered:Lab enrichment 1.0 family Methanosarcinaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Methanosarcinaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Methanosarcinaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -15506,7 +15769,6 @@ family Methanosarcinaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1. family Methanosarcinaceae root:Engineered:Wastewater:Water and sludge 4.0 family Methanosarcinaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Methanosarcinaceae root:Environmental:Terrestrial:Soil:Crop 1.0 -family Methanosarcinaceae root:Engineered:Lab enrichment 1.0 family Methanosarcinaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Methanosarcinaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Methanosarcinaceae root:Engineered:Biogas plant 2.0 @@ -15516,17 +15778,17 @@ family Methanosarcinaceae root:Environmental:Aquatic:Marine:Oil seeps 1.0 family Methanosarcinaceae root:Engineered:Solid waste:Solid animal waste 1.0 family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Lake 4.0 family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 -family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Fecal 27.0 +family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Fecal 28.0 family Spirochaetaceae root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 family Spirochaetaceae root:Host-associated:Birds:Digestive system:Fecal 3.0 family Spirochaetaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 3.0 -family Spirochaetaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +family Spirochaetaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 family Spirochaetaceae root:Environmental:Aquatic:Marine 9.0 family Spirochaetaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 family Spirochaetaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 -family Spirochaetaceae root:Host-associated:Mammals:Digestive system 9.0 +family Spirochaetaceae root:Host-associated:Mammals:Digestive system 10.0 family Spirochaetaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -family Spirochaetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 +family Spirochaetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 5.0 family Spirochaetaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 family Spirochaetaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Spirochaetaceae root:Engineered:Bioreactor 20.0 @@ -15539,11 +15801,14 @@ family Spirochaetaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary family Spirochaetaceae root:Host-associated:Human:Digestive system:Oral 6.0 family Spirochaetaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 family Spirochaetaceae root:Environmental:Terrestrial:Soil 4.0 -family Spirochaetaceae root:Environmental:Aquatic:Marine:Sediment 26.0 +family Spirochaetaceae root:Environmental:Aquatic:Marine:Sediment 27.0 +family Spirochaetaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Spirochaetaceae root:Environmental:Aquatic:Sediment 6.0 +family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Spirochaetaceae root:Engineered:Biogas plant:Wet fermentation 5.0 family Spirochaetaceae root:Host-associated:Porifera 7.0 -family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 +family Spirochaetaceae root:Engineered:Lab enrichment 2.0 +family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 14.0 family Spirochaetaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Spirochaetaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Spirochaetaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -15560,7 +15825,7 @@ family Spirochaetaceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Spirochaetaceae root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 family Spirochaetaceae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 8.0 -family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 family Spirochaetaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Spirochaetaceae root:Engineered:Lab enrichment:Defined media 2.0 family Spirochaetaceae root:Host-associated:Plants:Root 1.0 @@ -15568,13 +15833,13 @@ family Spirochaetaceae root:Environmental:Aquatic:Marine:Oil-contaminated sedime family Spirochaetaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 family Spirochaetaceae root:Host-associated:Mammals:Digestive system:Large intestine 3.0 +family Spirochaetaceae root:Engineered:Food production:Fermented seafood 1.0 family Spirochaetaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Spirochaetaceae root:Engineered:Wastewater:Industrial wastewater 4.0 family Spirochaetaceae root:Engineered:Modeled 1.0 family Spirochaetaceae root:Host-associated 2.0 family Spirochaetaceae root:Host-associated:Mollusca 1.0 -family Spirochaetaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -family Spirochaetaceae root:Host-associated:Fish:Digestive system 1.0 +family Spirochaetaceae root:Host-associated:Fish:Digestive system 2.0 family Spirochaetaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Spirochaetaceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Spirochaetaceae root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -15587,7 +15852,6 @@ family Spirochaetaceae root:Host-associated:Mammals:Gastrointestinal tract 3.0 family Spirochaetaceae root:Host-associated:Insecta 1.0 family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Spirochaetaceae root:Host-associated:Birds:Digestive system 1.0 -family Spirochaetaceae root:Engineered:Lab enrichment 2.0 family Spirochaetaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Spirochaetaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Spirochaetaceae root:Engineered:Solid waste:Landfill 1.0 @@ -15596,6 +15860,7 @@ family Spirochaetaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 family Spirochaetaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 family Spirochaetaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 +family Spirochaetaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Spirochaetaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 family Spirochaetaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 family Spirochaetaceae root:Environmental:Aquatic:Marine:Wetlands 1.0 @@ -15614,18 +15879,19 @@ family Prolixibacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Prolixibacteraceae root:Environmental:Terrestrial:Soil 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Sediment 11.0 family Prolixibacteraceae root:Environmental:Aquatic:Sediment 7.0 +family Prolixibacteraceae root:Engineered:Lab enrichment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -family Prolixibacteraceae root:Engineered:Lab enrichment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 +family Prolixibacteraceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Wetlands 1.0 family Prolixibacteraceae root:Environmental:Aquatic:Marine:Volcanic 1.0 family Kangiellaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -15680,13 +15946,14 @@ genus Sphaerochaeta root:Environmental:Aquatic:Sediment 1.0 genus Sphaerochaeta root:Engineered:Biogas plant:Wet fermentation 1.0 genus Sphaerochaeta root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Sphaerochaeta root:Environmental:Terrestrial:Soil:Desert 1.0 +genus Sphaerochaeta root:Engineered:Food production:Fermented seafood 1.0 genus Sphaerochaeta root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Sphaerochaeta root:Engineered:Wastewater:Water and sludge 1.0 genus Sphaerochaeta root:Engineered:Solid waste:Landfill 1.0 genus Sphaerochaeta root:Engineered:Biogas plant 2.0 genus Sphaerochaeta root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 genus Idiomarina root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Idiomarina root:Environmental:Aquatic:Marine 13.0 +genus Idiomarina root:Environmental:Aquatic:Marine 21.0 genus Idiomarina root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Idiomarina root:Environmental:Aquatic:Marine:Oceanic 6.0 genus Idiomarina root:Engineered:Bioreactor 2.0 @@ -15697,6 +15964,7 @@ genus Idiomarina root:Environmental:Aquatic:Marine:Sediment 3.0 genus Idiomarina root:Environmental:Aquatic 1.0 genus Idiomarina root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Idiomarina root:Environmental:Aquatic:Marine:Coastal 5.0 +genus Idiomarina root:Engineered:Bioreactor:Continuous culture 1.0 genus Idiomarina root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus Idiomarina root:Environmental:Aquatic:Marine:Pelagic 2.0 genus Idiomarina root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -15716,9 +15984,9 @@ genus Arcobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Arcobacter root:Engineered:Bioreactor 6.0 genus Arcobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Arcobacter root:Engineered:Wastewater:Activated Sludge 20.0 -genus Arcobacter root:Mixed 3.0 +genus Arcobacter root:Mixed 4.0 genus Arcobacter root:Engineered:Wastewater 10.0 -genus Arcobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +genus Arcobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 genus Arcobacter root:Engineered:Food production:Dairy products 1.0 genus Arcobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 genus Arcobacter root:Environmental:Terrestrial:Soil 2.0 @@ -15750,7 +16018,7 @@ genus Arcobacter root:Environmental:Aquatic:Freshwater:Lotic:Low land river syst genus Arcobacter root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Arcobacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Arcobacter root:Environmental:Aquatic:Marine:Pelagic 3.0 -genus Arcobacter root:Engineered:Wastewater:Water and sludge 5.0 +genus Arcobacter root:Engineered:Wastewater:Water and sludge 7.0 genus Arcobacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Arcobacter root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Arcobacter root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 @@ -15784,6 +16052,7 @@ genus Sulfurovum root:Host-associated:Plants:Rhizosphere 1.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Sediment 37.0 genus Sulfurovum root:Environmental:Aquatic:Sediment 3.0 +genus Sulfurovum root:Engineered:Lab enrichment 3.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Coastal 1.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Cold seeps 7.0 @@ -15800,7 +16069,6 @@ genus Sulfurovum root:Host-associated:Invertebrates:Echinodermata 1.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Sulfurovum root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Sulfurovum root:Engineered:Built environment 1.0 -genus Sulfurovum root:Engineered:Lab enrichment 3.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Sulfurovum root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 @@ -15817,10 +16085,10 @@ genus Methanomethylovorans root:Engineered:Bioreactor 3.0 genus Methanomethylovorans root:Engineered:Wastewater:Activated Sludge 1.0 genus Methanomethylovorans root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lake 5.0 -genus Pseudomonas root:Environmental:Aquatic:Freshwater:Sediment 11.0 +genus Pseudomonas root:Environmental:Aquatic:Freshwater:Sediment 12.0 genus Pseudomonas root:Host-associated:Mammals:Digestive system:Fecal 3.0 genus Pseudomonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 -genus Pseudomonas root:Environmental:Aquatic:Marine 53.0 +genus Pseudomonas root:Environmental:Aquatic:Marine 60.0 genus Pseudomonas root:Host-associated:Fish 4.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 8.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Oceanic 12.0 @@ -15830,7 +16098,7 @@ genus Pseudomonas root:Environmental:Terrestrial:Geologic 3.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Forest soil 8.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 genus Pseudomonas root:Host-associated:Human 6.0 -genus Pseudomonas root:Host-associated:Plants 31.0 +genus Pseudomonas root:Host-associated:Plants 32.0 genus Pseudomonas root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Agricultural 12.0 genus Pseudomonas root:Engineered:Bioreactor 14.0 @@ -15839,33 +16107,35 @@ genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 genus Pseudomonas root:Engineered:Wastewater:Activated Sludge 14.0 genus Pseudomonas root:Host-associated:Human:Skin 14.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Permafrost 2.0 -genus Pseudomonas root:Mixed 12.0 +genus Pseudomonas root:Mixed 13.0 genus Pseudomonas root:Host-associated:Mammals 4.0 genus Pseudomonas root:Host-associated:Amphibia 4.0 -genus Pseudomonas root:Engineered:Food production:Fermented beverages 5.0 +genus Pseudomonas root:Engineered:Food production:Fermented beverages 6.0 genus Pseudomonas root:Engineered:Wastewater 6.0 genus Pseudomonas root:Host-associated:Human:Reproductive system:Vagina 2.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Pseudomonas root:Host-associated:Human:Digestive system:Oral 3.0 -genus Pseudomonas root:Engineered:Food production:Dairy products 11.0 +genus Pseudomonas root:Engineered:Food production:Dairy products 13.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Contaminated 7.0 genus Pseudomonas root:Host-associated:Plants:Phylloplane 9.0 genus Pseudomonas root:Host-associated:Plants:Rhizosphere 26.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 -genus Pseudomonas root:Environmental:Terrestrial:Soil 66.0 -genus Pseudomonas root:Environmental:Aquatic:Marine:Sediment 37.0 -genus Pseudomonas root:Engineered:Modeled:Simulated communities (microbial mixture) 6.0 +genus Pseudomonas root:Environmental:Terrestrial:Soil 67.0 +genus Pseudomonas root:Environmental:Aquatic:Marine:Sediment 40.0 +genus Pseudomonas root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lotic 3.0 genus Pseudomonas root:Environmental:Aquatic:Sediment 4.0 genus Pseudomonas root:Environmental:Aquatic 6.0 genus Pseudomonas root:Engineered:Biogas plant:Wet fermentation 1.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 genus Pseudomonas root:Host-associated:Porifera 1.0 +genus Pseudomonas root:Engineered:Lab enrichment 3.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Wetlands 4.0 genus Pseudomonas root:Engineered:Lab Synthesis 1.0 genus Pseudomonas root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Pseudomonas root:Host-associated:Plants:Rhizosphere:Soil 7.0 genus Pseudomonas root:Host-associated:Human:Digestive system 3.0 -genus Pseudomonas root:Environmental:Aquatic:Freshwater 5.0 +genus Pseudomonas root:Environmental:Aquatic:Freshwater 6.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Coastal 13.0 @@ -15884,7 +16154,6 @@ genus Pseudomonas root:Environmental:Aquatic:Marine:Oil-contaminated sediment 3. genus Pseudomonas root:Engineered:Food production 4.0 genus Pseudomonas root:Environmental:Terrestrial:Deep subsurface 2.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -genus Pseudomonas root:Host-associated:Plants:Rhizosphere:Soil 6.0 genus Pseudomonas root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 genus Pseudomonas root:Engineered:Food production:Fermented seafood 2.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -15911,9 +16180,9 @@ genus Pseudomonas root:Environmental:Aquatic:Freshwater:Lotic:Low land river sys genus Pseudomonas root:Environmental:Aquatic:Thermal springs:Sediment 2.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -genus Pseudomonas root:Environmental:Aquatic:Freshwater:Groundwater 7.0 +genus Pseudomonas root:Environmental:Aquatic:Freshwater:Groundwater 9.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -genus Pseudomonas root:Environmental:Aquatic:Marine:Marginal Sea 3.0 +genus Pseudomonas root:Environmental:Aquatic:Marine:Marginal Sea 4.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Pelagic 3.0 genus Pseudomonas root:Engineered:Wastewater:Water and sludge 10.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone 1.0 @@ -15922,13 +16191,13 @@ genus Pseudomonas root:Environmental:Terrestrial:Rock-dwelling (subaerial biofil genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 genus Pseudomonas root:Host-associated:Reptile:Oral cavity 1.0 +genus Pseudomonas root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Ice 4.0 -genus Pseudomonas root:Host-associated:Insecta 6.0 +genus Pseudomonas root:Host-associated:Insecta 7.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Pseudomonas root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -genus Pseudomonas root:Engineered:Built environment 6.0 +genus Pseudomonas root:Engineered:Built environment 7.0 genus Pseudomonas root:Host-associated:Birds:Digestive system 1.0 -genus Pseudomonas root:Engineered:Lab enrichment 3.0 genus Pseudomonas root:Host-associated:Plants:Rhizoplane:Endophytes 3.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Pseudomonas root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -15945,6 +16214,7 @@ genus Pseudomonas root:Engineered 5.0 genus Pseudomonas root:Engineered:Industrial production 1.0 genus Pseudomonas root:Host-associated:Fish:Skin 1.0 genus Pseudomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +genus Pseudomonas root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Pseudomonas root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 genus Pseudomonas root:Host-associated:Arthropoda 3.0 genus Pseudomonas root:Host-associated:Fungi 1.0 @@ -15974,11 +16244,12 @@ genus Pseudomonas root:Environmental:Aquatic:Marine:Wetlands 1.0 genus Pseudomonas root:Host-associated:Invertebrates 1.0 genus Pseudomonas root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 genus Pseudomonas root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 +genus Pseudomonas root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Pseudomonas root:Host-associated:Annelida 1.0 genus Pseudomonas root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 genus Pseudomonas root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 genus Marinobacter root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Marinobacter root:Environmental:Aquatic:Marine 34.0 +genus Marinobacter root:Environmental:Aquatic:Marine 49.0 genus Marinobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Marinobacter root:Environmental:Aquatic:Marine:Oceanic 10.0 genus Marinobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -15987,6 +16258,7 @@ genus Marinobacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh genus Marinobacter root:Host-associated:Plants 1.0 genus Marinobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Marinobacter root:Environmental:Terrestrial:Soil:Agricultural 2.0 +genus Marinobacter root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 genus Marinobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Marinobacter root:Engineered:Food production:Dairy products 1.0 genus Marinobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 @@ -16040,7 +16312,7 @@ species Desulfuromonas acetoxidans root:Environmental:Aquatic:Marine 1.0 species Desulfuromonas acetoxidans root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Desulfuromonas acetoxidans root:Engineered:Bioreactor 1.0 species Wenzhouxiangella marina root:Environmental:Aquatic:Freshwater:Lake 1.0 -species Wenzhouxiangella marina root:Environmental:Aquatic:Marine 3.0 +species Wenzhouxiangella marina root:Environmental:Aquatic:Marine 4.0 species Wenzhouxiangella marina root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Wenzhouxiangella marina root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Wenzhouxiangella marina root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 @@ -16112,10 +16384,12 @@ kingdom Archaea root:Environmental:Aquatic 4.0 kingdom Archaea root:Engineered:Biogas plant:Wet fermentation 4.0 kingdom Archaea root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 kingdom Archaea root:Host-associated:Porifera 2.0 +kingdom Archaea root:Engineered:Lab enrichment 4.0 kingdom Archaea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 15.0 kingdom Archaea root:Environmental:Terrestrial:Soil:Wetlands 9.0 kingdom Archaea root:Environmental:Terrestrial:Soil:Grasslands 10.0 kingdom Archaea root:Host-associated:Birds:Digestive system:Ceca 2.0 +kingdom Archaea root:Host-associated:Plants:Rhizosphere:Soil 17.0 kingdom Archaea root:Host-associated:Human:Digestive system 3.0 kingdom Archaea root:Environmental:Aquatic:Freshwater 4.0 kingdom Archaea root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 @@ -16136,7 +16410,6 @@ kingdom Archaea root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 kingdom Archaea root:Engineered:Food production 1.0 kingdom Archaea root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 kingdom Archaea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -kingdom Archaea root:Host-associated:Plants:Rhizosphere:Soil 17.0 kingdom Archaea root:Environmental:Aquatic:Freshwater:Lentic 3.0 kingdom Archaea root:Environmental:Aquatic:Estuary 1.0 kingdom Archaea root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 @@ -16175,7 +16448,6 @@ kingdom Archaea root:Host-associated:Fish:Digestive system:Intestine 1.0 kingdom Archaea root:Host-associated:Insecta 2.0 kingdom Archaea root:Host-associated:Plants:Phylloplane:Endophytes 1.0 kingdom Archaea root:Engineered:Built environment 1.0 -kingdom Archaea root:Engineered:Lab enrichment 4.0 kingdom Archaea root:Environmental:Terrestrial:Soil:Boreal forest 1.0 kingdom Archaea root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 2.0 kingdom Archaea root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -16218,6 +16490,7 @@ kingdom Archaea root:Host-associated:Mammals:Nervous system:Brain 1.0 kingdom Archaea root:Environmental:Terrestrial:Volcanic 1.0 kingdom Archaea root:Environmental:Aquatic:Lentic 1.0 kingdom Archaea root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 +kingdom Archaea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Archaea root:Host-associated:Protozoa 1.0 kingdom Archaea root:Engineered:Solid waste:Composting:Grass 1.0 kingdom Archaea root:Host-associated:Invertebrates 1.0 @@ -16229,7 +16502,6 @@ kingdom Archaea root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1 kingdom Archaea root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 kingdom Archaea root:Host-associated:Mammals:Milk 1.0 kingdom Archaea root:Engineered:Solid waste:Solid animal waste 1.0 -kingdom Archaea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 kingdom Archaea root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 kingdom Archaea root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Freshwater:Lake 11.0 @@ -16253,8 +16525,10 @@ phylum Armatimonadetes root:Environmental:Terrestrial:Soil 21.0 phylum Armatimonadetes root:Environmental:Aquatic:Marine:Sediment 6.0 phylum Armatimonadetes root:Environmental:Aquatic:Freshwater:Lotic 2.0 phylum Armatimonadetes root:Environmental:Aquatic:Sediment 3.0 +phylum Armatimonadetes root:Engineered:Lab enrichment 1.0 phylum Armatimonadetes root:Engineered:Lab Synthesis 1.0 phylum Armatimonadetes root:Environmental:Terrestrial:Soil:Grasslands 1.0 +phylum Armatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum Armatimonadetes root:Environmental:Aquatic:Freshwater 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Thermal springs 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -16266,7 +16540,6 @@ phylum Armatimonadetes root:Host-associated:Plants:Root 2.0 phylum Armatimonadetes root:Engineered:Food production 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -phylum Armatimonadetes root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum Armatimonadetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Armatimonadetes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 phylum Armatimonadetes root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -16281,7 +16554,6 @@ phylum Armatimonadetes root:Engineered:Wastewater:Water and sludge 1.0 phylum Armatimonadetes root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 phylum Armatimonadetes root:Environmental:Terrestrial:Soil:Crop 1.0 phylum Armatimonadetes root:Engineered:Built environment 1.0 -phylum Armatimonadetes root:Engineered:Lab enrichment 1.0 phylum Armatimonadetes root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Armatimonadetes root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 phylum Armatimonadetes root:Engineered:Biogas plant 1.0 @@ -16319,8 +16591,10 @@ class [Saprospirae] root:Environmental:Aquatic:Marine:Sediment 1.0 class [Saprospirae] root:Environmental:Aquatic:Freshwater:Lotic 1.0 class [Saprospirae] root:Environmental:Aquatic 2.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +class [Saprospirae] root:Engineered:Lab enrichment 1.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Wetlands 1.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Grasslands 3.0 +class [Saprospirae] root:Host-associated:Plants:Rhizosphere:Soil 11.0 class [Saprospirae] root:Environmental:Aquatic:Freshwater 4.0 class [Saprospirae] root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class [Saprospirae] root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -16330,7 +16604,6 @@ class [Saprospirae] root:Environmental:Terrestrial:Soil:Desert 4.0 class [Saprospirae] root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class [Saprospirae] root:Engineered:Lab enrichment:Defined media 1.0 class [Saprospirae] root:Host-associated:Plants:Root 2.0 -class [Saprospirae] root:Host-associated:Plants:Rhizosphere:Soil 11.0 class [Saprospirae] root:Engineered:Food production:Fermented seafood 1.0 class [Saprospirae] root:Environmental:Aquatic:Freshwater:Lentic 1.0 class [Saprospirae] root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -16351,7 +16624,6 @@ class [Saprospirae] root:Environmental:Aquatic:Freshwater:Ice 3.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 class [Saprospirae] root:Host-associated:Insecta 1.0 class [Saprospirae] root:Engineered:Built environment 1.0 -class [Saprospirae] root:Engineered:Lab enrichment 1.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Boreal forest 1.0 class [Saprospirae] root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 class [Saprospirae] root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -16366,22 +16638,22 @@ class [Saprospirae] root:Host-associated:Human:Circulatory system 1.0 class [Saprospirae] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 class [Saprospirae] root:Environmental:Aquatic:Lentic 2.0 class [Saprospirae] root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 +class [Saprospirae] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class [Saprospirae] root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 class [Saprospirae] root:Engineered:Solid waste:Composting:Grass 1.0 class [Saprospirae] root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 -class [Saprospirae] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Gemmatales root:Environmental:Aquatic:Freshwater:Lake 2.0 order Gemmatales root:Environmental:Terrestrial:Soil:Forest soil 5.0 order Gemmatales root:Host-associated:Plants 1.0 order Gemmatales root:Host-associated:Human:Skin 1.0 order Gemmatales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Gemmatales root:Host-associated:Plants:Rhizosphere 2.0 -order Gemmatales root:Environmental:Terrestrial:Soil 14.0 +order Gemmatales root:Environmental:Terrestrial:Soil 15.0 order Gemmatales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Gemmatales root:Environmental:Terrestrial:Soil:Grasslands 2.0 +order Gemmatales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Gemmatales root:Environmental:Aquatic:Freshwater 3.0 order Gemmatales root:Environmental:Aquatic:Marine:Coastal 1.0 -order Gemmatales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Gemmatales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Gemmatales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Gemmatales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 @@ -16412,8 +16684,10 @@ order [Saprospirales] root:Environmental:Terrestrial:Soil 53.0 order [Saprospirales] root:Environmental:Aquatic:Freshwater:Lotic 1.0 order [Saprospirales] root:Environmental:Aquatic 1.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +order [Saprospirales] root:Engineered:Lab enrichment 1.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Wetlands 2.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Grasslands 3.0 +order [Saprospirales] root:Host-associated:Plants:Rhizosphere:Soil 10.0 order [Saprospirales] root:Environmental:Aquatic:Freshwater 4.0 order [Saprospirales] root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order [Saprospirales] root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -16423,7 +16697,6 @@ order [Saprospirales] root:Environmental:Terrestrial:Soil:Desert 3.0 order [Saprospirales] root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order [Saprospirales] root:Engineered:Lab enrichment:Defined media 1.0 order [Saprospirales] root:Host-associated:Plants:Root 1.0 -order [Saprospirales] root:Host-associated:Plants:Rhizosphere:Soil 10.0 order [Saprospirales] root:Environmental:Aquatic:Freshwater:Lentic 1.0 order [Saprospirales] root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order [Saprospirales] root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 @@ -16442,7 +16715,6 @@ order [Saprospirales] root:Environmental:Aquatic:Freshwater:Ice 1.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 order [Saprospirales] root:Host-associated:Insecta 1.0 order [Saprospirales] root:Engineered:Built environment 1.0 -order [Saprospirales] root:Engineered:Lab enrichment 1.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order [Saprospirales] root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 order [Saprospirales] root:Environmental 1.0 @@ -16453,14 +16725,14 @@ order [Saprospirales] root:Engineered:Wastewater:Nutrient removal:Dissolved orga order [Saprospirales] root:Host-associated:Human:Circulatory system 1.0 order [Saprospirales] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 order [Saprospirales] root:Environmental:Aquatic:Lentic 2.0 +order [Saprospirales] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order [Saprospirales] root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order [Saprospirales] root:Engineered:Solid waste:Composting:Grass 1.0 order [Saprospirales] root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 -order [Saprospirales] root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Caulobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -order Caulobacterales root:Environmental:Aquatic:Marine 6.0 +order Caulobacterales root:Environmental:Aquatic:Marine 10.0 order Caulobacterales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Caulobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Caulobacterales root:Environmental:Terrestrial:Geologic 1.0 @@ -16488,9 +16760,11 @@ order Caulobacterales root:Environmental:Aquatic:Marine:Sediment 7.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Caulobacterales root:Environmental:Aquatic 1.0 order Caulobacterales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +order Caulobacterales root:Engineered:Lab enrichment 1.0 order Caulobacterales root:Environmental:Terrestrial:Soil:Wetlands 1.0 +order Caulobacterales root:Host-associated:Plants:Rhizosphere:Soil 6.0 order Caulobacterales root:Host-associated:Human:Digestive system 1.0 -order Caulobacterales root:Environmental:Aquatic:Freshwater 1.0 +order Caulobacterales root:Environmental:Aquatic:Freshwater 2.0 order Caulobacterales root:Environmental:Aquatic:Marine:Coastal 2.0 order Caulobacterales root:Engineered:Solid waste:Composting 1.0 order Caulobacterales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -16500,7 +16774,6 @@ order Caulobacterales root:Host-associated:Mammals:Digestive system:Large intest order Caulobacterales root:Host-associated:Algae:Red algae 1.0 order Caulobacterales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Caulobacterales root:Host-associated:Plants:Root 2.0 -order Caulobacterales root:Host-associated:Plants:Rhizosphere:Soil 6.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Lentic 2.0 order Caulobacterales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Caulobacterales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -16511,13 +16784,12 @@ order Caulobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 order Caulobacterales root:Engineered:Bioreactor:Continuous culture 2.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 order Caulobacterales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 -order Caulobacterales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +order Caulobacterales root:Environmental:Aquatic:Freshwater:Groundwater 4.0 order Caulobacterales root:Engineered:Wastewater:Water and sludge 2.0 order Caulobacterales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Caulobacterales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 order Caulobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Caulobacterales root:Engineered:Lab enrichment 1.0 order Caulobacterales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 order Caulobacterales root:Host-associated:Animal 1.0 order Caulobacterales root:Engineered 1.0 @@ -16529,7 +16801,7 @@ order Caulobacterales root:Environmental:Aquatic:Thermal springs:Near-boiling (> family Alcaligenaceae root:Environmental:Aquatic:Freshwater:Lake 4.0 family Alcaligenaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 family Alcaligenaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 -family Alcaligenaceae root:Environmental:Aquatic:Marine 1.0 +family Alcaligenaceae root:Environmental:Aquatic:Marine 4.0 family Alcaligenaceae root:Host-associated:Fish 1.0 family Alcaligenaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Alcaligenaceae root:Host-associated:Mammals:Digestive system 2.0 @@ -16552,16 +16824,17 @@ family Alcaligenaceae root:Engineered:Modeled:Simulated communities (microbial m family Alcaligenaceae root:Environmental:Aquatic 3.0 family Alcaligenaceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Alcaligenaceae root:Host-associated:Porifera 1.0 +family Alcaligenaceae root:Engineered:Lab enrichment 1.0 family Alcaligenaceae root:Engineered:Lab Synthesis 1.0 family Alcaligenaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Alcaligenaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 +family Alcaligenaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Alcaligenaceae root:Host-associated:Human:Digestive system 1.0 family Alcaligenaceae root:Environmental:Aquatic:Freshwater 2.0 family Alcaligenaceae root:Engineered:Solid waste:Composting 7.0 family Alcaligenaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 family Alcaligenaceae root:Engineered:Lab enrichment:Defined media 1.0 family Alcaligenaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Alcaligenaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Alcaligenaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family Alcaligenaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Alcaligenaceae root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -16572,7 +16845,7 @@ family Alcaligenaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Alcaligenaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Alcaligenaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Alcaligenaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 -family Alcaligenaceae root:Engineered:Lab enrichment 1.0 +family Alcaligenaceae root:Engineered:Built environment 1.0 family Alcaligenaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Alcaligenaceae root:Engineered:Biogas plant 1.0 family Alcaligenaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 @@ -16598,14 +16871,14 @@ family Gemmataceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 family Gemmataceae root:Mixed 1.0 family Gemmataceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 family Gemmataceae root:Host-associated:Plants:Rhizosphere 4.0 -family Gemmataceae root:Environmental:Terrestrial:Soil 25.0 +family Gemmataceae root:Environmental:Terrestrial:Soil 27.0 family Gemmataceae root:Environmental:Aquatic:Marine:Sediment 4.0 family Gemmataceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 family Gemmataceae root:Environmental:Terrestrial:Soil:Grasslands 4.0 +family Gemmataceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Gemmataceae root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 family Gemmataceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Gemmataceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Gemmataceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Gemmataceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Gemmataceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 family Gemmataceae root:Host-associated 1.0 @@ -16655,10 +16928,11 @@ genus Salinispora root:Host-associated:Plants:Rhizosphere 7.0 genus Salinispora root:Environmental:Terrestrial:Soil 19.0 genus Salinispora root:Environmental:Aquatic:Freshwater:Lotic 2.0 genus Salinispora root:Environmental:Aquatic 1.0 +genus Salinispora root:Engineered:Lab enrichment 1.0 genus Salinispora root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Salinispora root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Salinispora root:Host-associated:Human:Digestive system 1.0 genus Salinispora root:Host-associated:Plants:Root 2.0 -genus Salinispora root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Salinispora root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Salinispora root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 genus Salinispora root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -16675,7 +16949,6 @@ genus Salinispora root:Environmental:Terrestrial:Rock-dwelling (subaerial biofil genus Salinispora root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Salinispora root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 genus Salinispora root:Engineered:Built environment 1.0 -genus Salinispora root:Engineered:Lab enrichment 1.0 genus Salinispora root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Salinispora root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 genus Salinispora root:Engineered 2.0 @@ -16683,8 +16956,8 @@ genus Salinispora root:Engineered:Bioremediation 1.0 genus Salinispora root:Host-associated:Human:Circulatory system 1.0 genus Salinispora root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 genus Salinispora root:Environmental:Aquatic:Lentic 1.0 -genus Salinispora root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Salinispora root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +genus Salinispora root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Parachlamydia root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Parachlamydia root:Environmental:Terrestrial:Soil 1.0 genus Parachlamydia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -16695,8 +16968,8 @@ genus Zymomonas root:Host-associated:Plants 1.0 genus Zymomonas root:Host-associated:Plants:Rhizosphere 1.0 genus Zymomonas root:Environmental:Terrestrial:Soil 8.0 genus Zymomonas root:Environmental:Terrestrial:Soil:Wetlands 1.0 -genus Zymomonas root:Environmental:Aquatic:Freshwater 2.0 genus Zymomonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Zymomonas root:Environmental:Aquatic:Freshwater 2.0 genus Zymomonas root:Environmental:Terrestrial:Soil:Mine 1.0 genus Zymomonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Zymomonas root:Environmental:Aquatic:Freshwater:Ice 2.0 @@ -16746,10 +17019,11 @@ species Salinispora tropica root:Host-associated:Plants:Rhizosphere 5.0 species Salinispora tropica root:Environmental:Terrestrial:Soil 15.0 species Salinispora tropica root:Environmental:Aquatic:Freshwater:Lotic 2.0 species Salinispora tropica root:Environmental:Aquatic 1.0 +species Salinispora tropica root:Engineered:Lab enrichment 1.0 species Salinispora tropica root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Salinispora tropica root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Salinispora tropica root:Host-associated:Human:Digestive system 1.0 species Salinispora tropica root:Host-associated:Plants:Root 2.0 -species Salinispora tropica root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Salinispora tropica root:Environmental:Aquatic:Freshwater:Lentic 1.0 species Salinispora tropica root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Salinispora tropica root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -16766,15 +17040,14 @@ species Salinispora tropica root:Environmental:Terrestrial:Rock-dwelling (subaer species Salinispora tropica root:Environmental:Aquatic:Freshwater:Ice 1.0 species Salinispora tropica root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 species Salinispora tropica root:Engineered:Built environment 1.0 -species Salinispora tropica root:Engineered:Lab enrichment 1.0 species Salinispora tropica root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 species Salinispora tropica root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 species Salinispora tropica root:Engineered 2.0 species Salinispora tropica root:Engineered:Bioremediation 1.0 species Salinispora tropica root:Host-associated:Human:Circulatory system 1.0 species Salinispora tropica root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 -species Salinispora tropica root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Salinispora tropica root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Salinispora tropica root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Luteolibacter alcaligenes root:Environmental:Aquatic:Freshwater:Lake 1.0 species Parachlamydia acanthamoebae root:Environmental:Aquatic:Freshwater:Lake 1.0 species Parachlamydia acanthamoebae root:Host-associated:Fish:Digestive system:Foregut 1.0 @@ -16799,7 +17072,7 @@ species Polynucleobacter ampelinus root:Environmental:Aquatic:Freshwater:Lotic:L species Polynucleobacter ampelinus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Freshwater:Lake 2.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Freshwater:Pond 2.0 -phylum Kiritimatiellaeota root:Host-associated:Mammals:Digestive system:Fecal 28.0 +phylum Kiritimatiellaeota root:Host-associated:Mammals:Digestive system:Fecal 29.0 phylum Kiritimatiellaeota root:Host-associated:Birds:Digestive system:Fecal 3.0 phylum Kiritimatiellaeota root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine 19.0 @@ -16809,14 +17082,16 @@ phylum Kiritimatiellaeota root:Host-associated:Mammals:Digestive system 11.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 phylum Kiritimatiellaeota root:Host-associated:Plants 1.0 phylum Kiritimatiellaeota root:Mixed 2.0 -phylum Kiritimatiellaeota root:Host-associated:Mammals 3.0 +phylum Kiritimatiellaeota root:Host-associated:Mammals 4.0 phylum Kiritimatiellaeota root:Engineered:Wastewater 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Kiritimatiellaeota root:Host-associated:Plants:Rhizosphere 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine:Sediment 19.0 +phylum Kiritimatiellaeota root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Sediment 4.0 phylum Kiritimatiellaeota root:Environmental:Aquatic 1.0 +phylum Kiritimatiellaeota root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Kiritimatiellaeota root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 phylum Kiritimatiellaeota root:Host-associated:Birds:Digestive system:Ceca 1.0 phylum Kiritimatiellaeota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -16850,14 +17125,14 @@ class Cytophagia root:Environmental:Aquatic:Freshwater:Pond 2.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Sediment 2.0 class Cytophagia root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 class Cytophagia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -class Cytophagia root:Environmental:Aquatic:Marine 86.0 +class Cytophagia root:Environmental:Aquatic:Marine 94.0 class Cytophagia root:Host-associated:Fish 1.0 class Cytophagia root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 class Cytophagia root:Environmental:Aquatic:Marine:Oceanic 29.0 class Cytophagia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 class Cytophagia root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Cytophagia root:Environmental:Aquatic:Lentic:Brackish 6.0 -class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 class Cytophagia root:Host-associated:Plants 16.0 class Cytophagia root:Environmental:Aquatic:Estuary:Sediment 6.0 class Cytophagia root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -16871,7 +17146,7 @@ class Cytophagia root:Host-associated:Mammals 2.0 class Cytophagia root:Host-associated:Amphibia 3.0 class Cytophagia root:Engineered:Food production:Fermented beverages 1.0 class Cytophagia root:Engineered:Wastewater 6.0 -class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 38.0 +class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 39.0 class Cytophagia root:Host-associated:Human:Digestive system:Oral 2.0 class Cytophagia root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Cytophagia root:Host-associated:Plants:Phylloplane 7.0 @@ -16884,6 +17159,8 @@ class Cytophagia root:Environmental:Aquatic:Freshwater:Lotic 3.0 class Cytophagia root:Environmental:Aquatic:Sediment 5.0 class Cytophagia root:Environmental:Aquatic 3.0 class Cytophagia root:Host-associated:Porifera 2.0 +class Cytophagia root:Engineered:Lab enrichment 1.0 +class Cytophagia root:Host-associated:Plants:Rhizosphere:Soil 4.0 class Cytophagia root:Environmental:Aquatic:Freshwater 5.0 class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 8.0 class Cytophagia root:Environmental:Aquatic:Marine:Coastal 11.0 @@ -16892,13 +17169,13 @@ class Cytophagia root:Environmental:Aquatic:Freshwater:Drinking water 3.0 class Cytophagia root:Environmental:Terrestrial:Soil:Desert 6.0 class Cytophagia root:Host-associated:Algae:Red algae 4.0 class Cytophagia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +class Cytophagia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Cytophagia root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 class Cytophagia root:Engineered:Lab enrichment:Defined media 1.0 class Cytophagia root:Host-associated:Plants:Root 3.0 class Cytophagia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 3.0 class Cytophagia root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -class Cytophagia root:Host-associated:Plants:Rhizosphere:Soil 4.0 class Cytophagia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 class Cytophagia root:Engineered:Food production:Fermented seafood 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Lentic 2.0 @@ -16923,22 +17200,21 @@ class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 class Cytophagia root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Groundwater 6.0 class Cytophagia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -class Cytophagia root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +class Cytophagia root:Environmental:Aquatic:Marine:Marginal Sea 3.0 class Cytophagia root:Environmental:Aquatic:Marine:Pelagic 10.0 class Cytophagia root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +class Cytophagia root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 class Cytophagia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 class Cytophagia root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 class Cytophagia root:Host-associated:Reptile:Oral cavity 1.0 -class Cytophagia root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Ice 4.0 class Cytophagia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Cytophagia root:Host-associated:Insecta 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Cytophagia root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Cytophagia root:Engineered:Built environment 2.0 -class Cytophagia root:Engineered:Lab enrichment 1.0 class Cytophagia root:Environmental:Terrestrial:Soil:Boreal forest 1.0 class Cytophagia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Cytophagia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -16953,6 +17229,7 @@ class Cytophagia root:Engineered 2.0 class Cytophagia root:Environmental:Aquatic:Aquaculture 1.0 class Cytophagia root:Host-associated:Fish:Skin 1.0 class Cytophagia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 +class Cytophagia root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Cytophagia root:Host-associated:Arthropoda 1.0 class Cytophagia root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 class Cytophagia root:Engineered:Bioremediation 1.0 @@ -16974,12 +17251,12 @@ class Cytophagia root:Host-associated:Microbial:Bacteria 1.0 class Cytophagia root:Environmental:Terrestrial:Agricultural field 1.0 order Cellvibrionales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Cellvibrionales root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Cellvibrionales root:Environmental:Aquatic:Marine 152.0 +order Cellvibrionales root:Environmental:Aquatic:Marine 157.0 order Cellvibrionales root:Host-associated:Fish 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 -order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic 36.0 +order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic 37.0 order Cellvibrionales root:Environmental:Aquatic:Lentic:Brackish 1.0 -order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 +order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 5.0 order Cellvibrionales root:Host-associated:Plants 3.0 order Cellvibrionales root:Environmental:Aquatic:Estuary:Sediment 6.0 order Cellvibrionales root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -16996,6 +17273,7 @@ order Cellvibrionales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Cellvibrionales root:Environmental:Aquatic:Sediment 3.0 order Cellvibrionales root:Environmental:Aquatic 1.0 order Cellvibrionales root:Host-associated:Porifera 5.0 +order Cellvibrionales root:Engineered:Lab enrichment 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 8.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Coastal 28.0 @@ -17019,14 +17297,14 @@ order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -order Cellvibrionales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +order Cellvibrionales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Pelagic 12.0 +order Cellvibrionales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Cellvibrionales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Cellvibrionales root:Host-associated:Invertebrates:Echinodermata 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -order Cellvibrionales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Cellvibrionales root:Engineered:Built environment 1.0 -order Cellvibrionales root:Engineered:Lab enrichment 1.0 order Cellvibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Cellvibrionales root:Host-associated:Algae 2.0 order Cellvibrionales root:Environmental:Aquatic:Aquaculture 1.0 @@ -17038,10 +17316,10 @@ order Cellvibrionales root:Environmental:Aquatic:Marine:Volcanic 1.0 order Cellvibrionales root:Host-associated:Algae:Brown Algae 2.0 family Halieaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Halieaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Halieaceae root:Environmental:Aquatic:Marine 107.0 +family Halieaceae root:Environmental:Aquatic:Marine 109.0 family Halieaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 family Halieaceae root:Environmental:Aquatic:Marine:Oceanic 18.0 -family Halieaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 +family Halieaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 family Halieaceae root:Host-associated:Plants 1.0 family Halieaceae root:Environmental:Aquatic:Estuary:Sediment 5.0 family Halieaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -17053,6 +17331,7 @@ family Halieaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 family Halieaceae root:Environmental:Aquatic:Marine:Sediment 23.0 family Halieaceae root:Environmental:Aquatic:Sediment 3.0 family Halieaceae root:Host-associated:Porifera 5.0 +family Halieaceae root:Engineered:Lab enrichment 1.0 family Halieaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 8.0 family Halieaceae root:Environmental:Aquatic:Marine:Coastal 23.0 family Halieaceae root:Environmental:Aquatic:Marine:Cold seeps 2.0 @@ -17066,13 +17345,12 @@ family Halieaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Halieaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Halieaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 family Halieaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -family Halieaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +family Halieaceae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 family Halieaceae root:Environmental:Aquatic:Marine:Pelagic 6.0 family Halieaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Halieaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 family Halieaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 family Halieaceae root:Engineered:Built environment 1.0 -family Halieaceae root:Engineered:Lab enrichment 1.0 family Halieaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 family Halieaceae root:Engineered 1.0 family Halieaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -17080,10 +17358,10 @@ family Halieaceae root:Host-associated:Algae:Brown Algae 2.0 family Halieaceae root:Host-associated:Invertebrates:Cnidaria 1.0 family Synechococcaceae root:Environmental:Aquatic:Freshwater:Lake 11.0 family Synechococcaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Synechococcaceae root:Environmental:Aquatic:Marine 47.0 +family Synechococcaceae root:Environmental:Aquatic:Marine 48.0 family Synechococcaceae root:Host-associated:Fish 1.0 family Synechococcaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Synechococcaceae root:Environmental:Aquatic:Marine:Oceanic 13.0 +family Synechococcaceae root:Environmental:Aquatic:Marine:Oceanic 14.0 family Synechococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Synechococcaceae root:Host-associated:Plants 1.0 family Synechococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 @@ -17114,10 +17392,11 @@ family Synechococcaceae root:Environmental:Aquatic:Lentic 1.0 family Synechococcaceae root:Host-associated:Invertebrates 1.0 family Chromatiaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Chromatiaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Chromatiaceae root:Environmental:Aquatic:Marine 5.0 +family Chromatiaceae root:Environmental:Aquatic:Marine 6.0 family Chromatiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -family Chromatiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +family Chromatiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 family Chromatiaceae root:Engineered:Bioreactor 1.0 +family Chromatiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 family Chromatiaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Chromatiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Chromatiaceae root:Environmental:Terrestrial:Soil 1.0 @@ -17146,7 +17425,7 @@ family Desulfobulbaceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 family Desulfobulbaceae root:Environmental:Aquatic:Marine 17.0 family Desulfobulbaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 family Desulfobulbaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 -family Desulfobulbaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 9.0 +family Desulfobulbaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 10.0 family Desulfobulbaceae root:Environmental:Aquatic:Estuary:Sediment 8.0 family Desulfobulbaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Desulfobulbaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -17162,10 +17441,11 @@ family Desulfobulbaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Desulfobulbaceae root:Host-associated:Plants:Rhizosphere 2.0 family Desulfobulbaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 14.0 family Desulfobulbaceae root:Environmental:Terrestrial:Soil 8.0 -family Desulfobulbaceae root:Environmental:Aquatic:Marine:Sediment 68.0 +family Desulfobulbaceae root:Environmental:Aquatic:Marine:Sediment 69.0 family Desulfobulbaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Desulfobulbaceae root:Environmental:Aquatic:Sediment 5.0 family Desulfobulbaceae root:Environmental:Aquatic 1.0 +family Desulfobulbaceae root:Engineered:Lab enrichment 3.0 family Desulfobulbaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Desulfobulbaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Desulfobulbaceae root:Environmental:Aquatic:Freshwater 1.0 @@ -17191,7 +17471,6 @@ family Desulfobulbaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Desulfobulbaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Desulfobulbaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 4.0 family Desulfobulbaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 -family Desulfobulbaceae root:Engineered:Lab enrichment 3.0 family Desulfobulbaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 family Desulfobulbaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Desulfobulbaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -17231,7 +17510,7 @@ family Arenicellaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Arenicellaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 genus Woeseia root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Woeseia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -genus Woeseia root:Environmental:Aquatic:Marine 37.0 +genus Woeseia root:Environmental:Aquatic:Marine 38.0 genus Woeseia root:Environmental:Aquatic:Marine:Oceanic:Sediment 9.0 genus Woeseia root:Environmental:Aquatic:Marine:Oceanic 17.0 genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 @@ -17241,18 +17520,20 @@ genus Woeseia root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Woeseia root:Engineered:Bioreactor 2.0 genus Woeseia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 genus Woeseia root:Mixed 4.0 -genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 genus Woeseia root:Host-associated:Plants:Rhizosphere 1.0 -genus Woeseia root:Environmental:Aquatic:Marine:Coastal:Sediment 18.0 -genus Woeseia root:Environmental:Aquatic:Marine:Sediment 73.0 +genus Woeseia root:Environmental:Aquatic:Marine:Coastal:Sediment 19.0 +genus Woeseia root:Environmental:Aquatic:Marine:Sediment 74.0 genus Woeseia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Woeseia root:Environmental:Aquatic:Sediment 3.0 genus Woeseia root:Environmental:Aquatic 1.0 genus Woeseia root:Host-associated:Porifera 8.0 +genus Woeseia root:Engineered:Lab enrichment 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 5.0 genus Woeseia root:Environmental:Aquatic:Marine:Coastal 10.0 genus Woeseia root:Environmental:Aquatic:Marine:Cold seeps 3.0 +genus Woeseia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 genus Woeseia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 3.0 genus Woeseia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 @@ -17267,13 +17548,12 @@ genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 genus Woeseia root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 genus Woeseia root:Environmental:Aquatic:Marine:Marginal Sea 3.0 genus Woeseia root:Environmental:Aquatic:Marine:Pelagic 2.0 +genus Woeseia root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Woeseia root:Host-associated:Invertebrates:Echinodermata 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -genus Woeseia root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 genus Woeseia root:Engineered:Built environment 1.0 -genus Woeseia root:Engineered:Lab enrichment 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 5.0 genus Woeseia root:Host-associated:Algae 1.0 genus Woeseia root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 @@ -17307,10 +17587,12 @@ genus Desulfatiglans root:Environmental:Aquatic:Estuary:Sediment 2.0 genus Desulfatiglans root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Desulfatiglans root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 genus Desulfatiglans root:Mixed 1.0 +genus Desulfatiglans root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 -genus Desulfatiglans root:Environmental:Aquatic:Marine:Sediment 55.0 +genus Desulfatiglans root:Environmental:Aquatic:Marine:Sediment 58.0 genus Desulfatiglans root:Environmental:Aquatic:Sediment 6.0 genus Desulfatiglans root:Environmental:Aquatic 2.0 +genus Desulfatiglans root:Engineered:Lab enrichment 1.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Coastal 2.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Cold seeps 5.0 @@ -17322,7 +17604,6 @@ genus Desulfatiglans root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Desulfatiglans root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -genus Desulfatiglans root:Engineered:Lab enrichment 1.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 genus Desulfatiglans root:Environmental:Aquatic:Marine:Cold seeps:Sediment 3.0 genus Desulfatiglans root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 @@ -17333,7 +17614,7 @@ genus Desulfatiglans root:Environmental:Aquatic:Marine:Oil seeps 1.0 genus Blastopirellula root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Blastopirellula root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Blastopirellula root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -genus Blastopirellula root:Environmental:Aquatic:Marine 21.0 +genus Blastopirellula root:Environmental:Aquatic:Marine 22.0 genus Blastopirellula root:Host-associated:Fish 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Oceanic 5.0 @@ -17347,18 +17628,20 @@ genus Blastopirellula root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Sediment 22.0 genus Blastopirellula root:Environmental:Aquatic 1.0 genus Blastopirellula root:Host-associated:Porifera 5.0 +genus Blastopirellula root:Engineered:Lab enrichment 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Coastal 8.0 +genus Blastopirellula root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 genus Blastopirellula root:Host-associated:Mollusca 1.0 genus Blastopirellula root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Blastopirellula root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +genus Blastopirellula root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Blastopirellula root:Host-associated:Insecta 1.0 genus Blastopirellula root:Engineered:Built environment 1.0 genus Blastopirellula root:Host-associated:Birds:Digestive system 1.0 -genus Blastopirellula root:Engineered:Lab enrichment 1.0 genus Blastopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Blastopirellula root:Host-associated:Arthropoda 1.0 genus Blastopirellula root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 @@ -17379,6 +17662,7 @@ genus Halioglobus root:Host-associated:Plants:Rhizosphere 1.0 genus Halioglobus root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 genus Halioglobus root:Environmental:Aquatic:Marine:Sediment 15.0 genus Halioglobus root:Environmental:Aquatic:Sediment 2.0 +genus Halioglobus root:Engineered:Lab enrichment 1.0 genus Halioglobus root:Environmental:Aquatic:Marine:Coastal 5.0 genus Halioglobus root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Halioglobus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -17388,17 +17672,17 @@ genus Halioglobus root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Halioglobus root:Host-associated:Invertebrates:Echinodermata 1.0 genus Halioglobus root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Halioglobus root:Engineered:Built environment 1.0 -genus Halioglobus root:Engineered:Lab enrichment 1.0 genus Halioglobus root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 genus Candidatus Competibacter root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Candidatus Competibacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Candidatus Competibacter root:Engineered:Bioreactor 3.0 -genus Candidatus Competibacter root:Engineered:Wastewater:Activated Sludge 5.0 +genus Candidatus Competibacter root:Engineered:Wastewater:Activated Sludge 6.0 genus Candidatus Competibacter root:Engineered:Wastewater 2.0 genus Candidatus Competibacter root:Environmental:Aquatic:Marine:Sediment 2.0 genus Candidatus Competibacter root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Candidatus Competibacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Candidatus Competibacter root:Engineered:Wastewater:Water and sludge 2.0 +genus Candidatus Competibacter root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Candidatus Isobeggiatoa divolgata root:Environmental:Aquatic:Freshwater:Lake 1.0 species Candidatus Isobeggiatoa divolgata root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Candidatus Isobeggiatoa divolgata root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -17417,10 +17701,10 @@ species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic:M species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic:Marine:Sediment 16.0 species bacterium enrichment culture clone 33(2013) root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic 1.0 +species bacterium enrichment culture clone 33(2013) root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic:Marine:Coastal 2.0 species bacterium enrichment culture clone 33(2013) root:Engineered:Bioreactor:Continuous culture 1.0 species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -species bacterium enrichment culture clone 33(2013) root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture clone 33(2013) root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Thiomargarita namibiensis root:Environmental:Aquatic:Freshwater:Lake 1.0 species Thiomargarita namibiensis root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -17441,9 +17725,9 @@ species bacterium enrichment culture root:Mixed 1.0 species bacterium enrichment culture root:Environmental:Aquatic:Marine:Sediment 10.0 species bacterium enrichment culture root:Environmental:Aquatic:Sediment 1.0 species bacterium enrichment culture root:Environmental:Aquatic 1.0 +species bacterium enrichment culture root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 species bacterium enrichment culture root:Engineered:Bioreactor:Continuous culture 1.0 -species bacterium enrichment culture root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 species bacterium enrichment culture root:Environmental:Aquatic:Marine:Oil seeps 1.0 class Synechococcophycideae root:Environmental:Aquatic:Freshwater:Lake 10.0 @@ -17532,9 +17816,11 @@ class Sphingobacteriia root:Engineered:Modeled:Simulated communities (microbial class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Lotic 2.0 class Sphingobacteriia root:Environmental:Aquatic:Sediment 2.0 class Sphingobacteriia root:Environmental:Aquatic 1.0 +class Sphingobacteriia root:Engineered:Lab enrichment 4.0 class Sphingobacteriia root:Environmental:Terrestrial:Soil:Wetlands 1.0 class Sphingobacteriia root:Engineered:Lab Synthesis 1.0 class Sphingobacteriia root:Environmental:Terrestrial:Soil:Grasslands 2.0 +class Sphingobacteriia root:Host-associated:Plants:Rhizosphere:Soil 6.0 class Sphingobacteriia root:Host-associated:Human:Digestive system 2.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater 4.0 class Sphingobacteriia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -17549,14 +17835,13 @@ class Sphingobacteriia root:Engineered:Lab enrichment:Defined media 2.0 class Sphingobacteriia root:Host-associated:Plants:Root 4.0 class Sphingobacteriia root:Engineered:Food production 1.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Sphingobacteriia root:Host-associated:Plants:Rhizosphere:Soil 6.0 class Sphingobacteriia root:Engineered:Food production:Fermented seafood 1.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Lentic 3.0 class Sphingobacteriia root:Environmental:Aquatic:Estuary 2.0 class Sphingobacteriia root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Sphingobacteriia root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 class Sphingobacteriia root:Engineered:Modeled 1.0 -class Sphingobacteriia root:Host-associated:Insecta:Digestive system 2.0 +class Sphingobacteriia root:Host-associated:Insecta:Digestive system 3.0 class Sphingobacteriia root:Host-associated 4.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Ice:Glacier 8.0 class Sphingobacteriia root:Environmental:Aquatic:Marine:Brackish 5.0 @@ -17574,7 +17859,6 @@ class Sphingobacteriia root:Host-associated:Reptile:Oral cavity 1.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Ice 3.0 class Sphingobacteriia root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 class Sphingobacteriia root:Host-associated:Insecta 2.0 -class Sphingobacteriia root:Engineered:Lab enrichment 4.0 class Sphingobacteriia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Sphingobacteriia root:Engineered:Food production:Fermented vegetables 5.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 @@ -17586,6 +17870,7 @@ class Sphingobacteriia root:Host-associated:Plants:Rhizome 1.0 class Sphingobacteriia root:Engineered:Industrial production 1.0 class Sphingobacteriia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +class Sphingobacteriia root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Sphingobacteriia root:Host-associated:Arthropoda 1.0 class Sphingobacteriia root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 class Sphingobacteriia root:Host-associated:Fungi 1.0 @@ -17611,29 +17896,36 @@ order Pirellulales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Pirellulales root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Pirellulales root:Environmental:Aquatic:Marine 5.0 order Pirellulales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +order Pirellulales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Pirellulales root:Host-associated:Mammals:Digestive system 1.0 order Pirellulales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +order Pirellulales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Pirellulales root:Host-associated:Plants 1.0 order Pirellulales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Pirellulales root:Engineered:Food production:Silage fermentation 1.0 order Pirellulales root:Host-associated:Plants:Rhizosphere 2.0 order Pirellulales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Pirellulales root:Environmental:Terrestrial:Soil 2.0 -order Pirellulales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Pirellulales root:Environmental:Aquatic:Marine:Sediment 4.0 order Pirellulales root:Environmental:Terrestrial:Soil:Wetlands 1.0 +order Pirellulales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Pirellulales root:Environmental:Aquatic:Freshwater 2.0 order Pirellulales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Pirellulales root:Environmental:Aquatic:Marine:Coastal 1.0 order Pirellulales root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Pirellulales root:Engineered:Solid waste:Composting 2.0 order Pirellulales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -order Pirellulales root:Host-associated:Plants:Rhizosphere:Soil 2.0 +order Pirellulales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +order Pirellulales root:Host-associated:Fish:Digestive system 1.0 order Pirellulales root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 order Pirellulales root:Engineered:Wastewater:Water and sludge 1.0 +order Pirellulales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Pirellulales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Pirellulales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Pirellulales root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Pirellulales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Pirellulales root:Engineered 1.0 +order Pirellulales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Pirellulales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 order Pirellulales root:Host-associated:Invertebrates 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Lake 13.0 @@ -17665,8 +17957,10 @@ order Sphingobacteriales root:Environmental:Aquatic:Marine:Sediment 2.0 order Sphingobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Sphingobacteriales root:Environmental:Aquatic:Sediment 2.0 +order Sphingobacteriales root:Engineered:Lab enrichment 1.0 order Sphingobacteriales root:Engineered:Lab Synthesis 1.0 order Sphingobacteriales root:Environmental:Terrestrial:Soil:Grasslands 2.0 +order Sphingobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Sphingobacteriales root:Host-associated:Human:Digestive system 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater 4.0 order Sphingobacteriales root:Environmental:Aquatic:Thermal springs 1.0 @@ -17678,7 +17972,6 @@ order Sphingobacteriales root:Host-associated:Mammals:Digestive system:Large int order Sphingobacteriales root:Engineered:Lab enrichment:Defined media 2.0 order Sphingobacteriales root:Host-associated:Plants:Root 3.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Sphingobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Lentic 3.0 order Sphingobacteriales root:Environmental:Aquatic:Estuary 1.0 order Sphingobacteriales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -17696,7 +17989,6 @@ order Sphingobacteriales root:Engineered:Lab enrichment:Defined media:Marine med order Sphingobacteriales root:Host-associated:Reptile:Oral cavity 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Ice 2.0 order Sphingobacteriales root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 -order Sphingobacteriales root:Engineered:Lab enrichment 1.0 order Sphingobacteriales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Sphingobacteriales root:Engineered:Food production:Fermented vegetables 1.0 order Sphingobacteriales root:Host-associated:Birds 1.0 @@ -17706,6 +17998,7 @@ order Sphingobacteriales root:Host-associated:Plants:Rhizome 1.0 order Sphingobacteriales root:Engineered:Industrial production 1.0 order Sphingobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +order Sphingobacteriales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 order Sphingobacteriales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Sphingobacteriales root:Host-associated:Fungi 1.0 @@ -17720,9 +18013,9 @@ order Sphingobacteriales root:Engineered:Wastewater:Industrial wastewater:Petroc order Sphingobacteriales root:Host-associated:Spiralia 1.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater:Lake 6.0 family Pirellulaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 -family Pirellulaceae root:Environmental:Aquatic:Marine 6.0 +family Pirellulaceae root:Environmental:Aquatic:Marine 7.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -family Pirellulaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 +family Pirellulaceae root:Environmental:Aquatic:Marine:Oceanic 3.0 family Pirellulaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Pirellulaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 @@ -17731,12 +18024,13 @@ family Pirellulaceae root:Host-associated:Plants 2.0 family Pirellulaceae root:Engineered:Food production:Silage fermentation 1.0 family Pirellulaceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 family Pirellulaceae root:Engineered:Food production:Fermented beverages 1.0 -family Pirellulaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Pirellulaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Pirellulaceae root:Host-associated:Plants:Rhizosphere 4.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -family Pirellulaceae root:Environmental:Terrestrial:Soil 5.0 -family Pirellulaceae root:Environmental:Aquatic:Marine:Sediment 4.0 +family Pirellulaceae root:Environmental:Terrestrial:Soil 6.0 +family Pirellulaceae root:Environmental:Aquatic:Marine:Sediment 6.0 family Pirellulaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 +family Pirellulaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater 2.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -17744,24 +18038,27 @@ family Pirellulaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 family Pirellulaceae root:Engineered:Solid waste:Composting 2.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 -family Pirellulaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +family Pirellulaceae root:Host-associated:Arthropoda:Digestive system:Gut 2.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Pirellulaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 +family Pirellulaceae root:Host-associated:Fish:Digestive system 1.0 family Pirellulaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Pirellulaceae root:Engineered:Wastewater:Water and sludge 1.0 +family Pirellulaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Pirellulaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 family Pirellulaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Pirellulaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 +family Pirellulaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Pirellulaceae root:Environmental 1.0 family Pirellulaceae root:Engineered 1.0 +family Pirellulaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Pirellulaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Pirellulaceae root:Host-associated:Invertebrates 1.0 genus Synechococcus root:Environmental:Aquatic:Freshwater:Lake 9.0 genus Synechococcus root:Environmental:Aquatic:Freshwater:Sediment 2.0 -genus Synechococcus root:Environmental:Aquatic:Marine 44.0 +genus Synechococcus root:Environmental:Aquatic:Marine 45.0 genus Synechococcus root:Host-associated:Fish 1.0 -genus Synechococcus root:Environmental:Aquatic:Marine:Oceanic 14.0 +genus Synechococcus root:Environmental:Aquatic:Marine:Oceanic 15.0 genus Synechococcus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Synechococcus root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Synechococcus root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -17788,8 +18085,8 @@ genus Synechococcus root:Environmental:Aquatic:Marine:Oceanic:Photic zone 3.0 genus Synechococcus root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Synechococcus root:Environmental:Aquatic:Marine:Pelagic 2.0 genus Synechococcus root:Engineered:Wastewater:Water and sludge 2.0 -genus Synechococcus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Synechococcus root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Synechococcus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Synechococcus root:Host-associated:Insecta 1.0 genus Synechococcus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Synechococcus root:Engineered 2.0 @@ -17819,13 +18116,13 @@ genus Caldilinea root:Environmental:Aquatic:Marine:Sediment 1.0 genus Caldilinea root:Environmental:Aquatic 1.0 genus Caldilinea root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Caldilinea root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Caldilinea root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Caldilinea root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Caldilinea root:Environmental:Aquatic:Marine:Coastal 2.0 genus Caldilinea root:Engineered:Solid waste:Composting 1.0 genus Caldilinea root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Caldilinea root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 genus Caldilinea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Caldilinea root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Caldilinea root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Caldilinea root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Caldilinea root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 @@ -17841,15 +18138,15 @@ genus Gemmata root:Engineered:Food production:Silage fermentation 1.0 genus Gemmata root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 genus Gemmata root:Host-associated:Plants:Rhizosphere 3.0 genus Gemmata root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Gemmata root:Environmental:Terrestrial:Soil 8.0 +genus Gemmata root:Environmental:Terrestrial:Soil 9.0 genus Gemmata root:Environmental:Aquatic:Marine:Sediment 1.0 genus Gemmata root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Gemmata root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Gemmata root:Environmental:Aquatic:Marine:Coastal 1.0 genus Gemmata root:Engineered:Solid waste:Composting 1.0 genus Gemmata root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Gemmata root:Environmental:Terrestrial:Soil:Desert 1.0 genus Gemmata root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Gemmata root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Gemmata root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Gemmata root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Gemmata root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -17872,6 +18169,7 @@ genus Chryseobacterium root:Engineered:Wastewater:Activated Sludge 6.0 genus Chryseobacterium root:Host-associated:Human:Skin 3.0 genus Chryseobacterium root:Mixed 3.0 genus Chryseobacterium root:Host-associated:Amphibia 2.0 +genus Chryseobacterium root:Engineered:Food production:Fermented beverages 1.0 genus Chryseobacterium root:Engineered:Wastewater 1.0 genus Chryseobacterium root:Engineered:Food production:Dairy products 2.0 genus Chryseobacterium root:Host-associated:Plants:Phylloplane 3.0 @@ -17879,6 +18177,7 @@ genus Chryseobacterium root:Host-associated:Plants:Rhizosphere 5.0 genus Chryseobacterium root:Environmental:Terrestrial:Soil 5.0 genus Chryseobacterium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Chryseobacterium root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +genus Chryseobacterium root:Engineered:Lab enrichment 1.0 genus Chryseobacterium root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Chryseobacterium root:Engineered:Lab Synthesis 1.0 genus Chryseobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -17892,7 +18191,6 @@ genus Chryseobacterium root:Engineered:Wastewater:Water and sludge 2.0 genus Chryseobacterium root:Host-associated:Reptile:Oral cavity 1.0 genus Chryseobacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Chryseobacterium root:Host-associated:Insecta 2.0 -genus Chryseobacterium root:Engineered:Lab enrichment 1.0 genus Chryseobacterium root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 genus Chryseobacterium root:Host-associated:Mammals:Respiratory system 1.0 genus Chryseobacterium root:Environmental 1.0 @@ -17911,17 +18209,18 @@ genus Pedobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Pedobacter root:Host-associated:Plants:Rhizosphere 4.0 genus Pedobacter root:Environmental:Terrestrial:Soil 6.0 genus Pedobacter root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Pedobacter root:Engineered:Lab enrichment 1.0 +genus Pedobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Pedobacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Pedobacter root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -genus Pedobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Pedobacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Pedobacter root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Pedobacter root:Environmental:Aquatic:Marine:Brackish 6.0 +genus Pedobacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Pedobacter root:Engineered:Wastewater:Water and sludge 1.0 genus Pedobacter root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Pedobacter root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Pedobacter root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -genus Pedobacter root:Engineered:Lab enrichment 1.0 genus Pedobacter root:Environmental 1.0 genus Pedobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Pedobacter root:Host-associated:Fungi 1.0 @@ -17953,20 +18252,20 @@ phylum Arthropoda root:Environmental:Aquatic:Freshwater:Sediment 1.0 phylum Arthropoda root:Host-associated:Mammals:Digestive system:Fecal 2.0 phylum Arthropoda root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Arthropoda root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -phylum Arthropoda root:Environmental:Aquatic:Marine 108.0 +phylum Arthropoda root:Environmental:Aquatic:Marine 112.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic 35.0 +phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic 37.0 phylum Arthropoda root:Host-associated:Mammals:Digestive system 2.0 phylum Arthropoda root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 phylum Arthropoda root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Arthropoda root:Environmental:Aquatic:Lentic:Brackish 1.0 -phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 phylum Arthropoda root:Host-associated:Plants 15.0 phylum Arthropoda root:Environmental:Aquatic:Estuary:Sediment 5.0 phylum Arthropoda root:Host-associated:Human:Digestive system:Large intestine 1.0 phylum Arthropoda root:Environmental:Terrestrial:Soil:Agricultural 1.0 phylum Arthropoda root:Engineered:Bioreactor 4.0 -phylum Arthropoda root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +phylum Arthropoda root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 phylum Arthropoda root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Arthropoda root:Engineered:Wastewater:Activated Sludge 1.0 phylum Arthropoda root:Host-associated:Human:Skin 5.0 @@ -17976,7 +18275,7 @@ phylum Arthropoda root:Host-associated:Mammals 1.0 phylum Arthropoda root:Host-associated:Amphibia 2.0 phylum Arthropoda root:Engineered:Food production:Fermented beverages 3.0 phylum Arthropoda root:Engineered:Wastewater 1.0 -phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 43.0 +phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 44.0 phylum Arthropoda root:Engineered:Food production:Dairy products 1.0 phylum Arthropoda root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Arthropoda root:Host-associated:Plants:Phylloplane 3.0 @@ -17990,9 +18289,11 @@ phylum Arthropoda root:Environmental:Aquatic:Sediment 1.0 phylum Arthropoda root:Environmental:Aquatic 2.0 phylum Arthropoda root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 phylum Arthropoda root:Host-associated:Porifera 1.0 +phylum Arthropoda root:Engineered:Lab enrichment 1.0 phylum Arthropoda root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 phylum Arthropoda root:Host-associated:Birds:Digestive system:Ceca 1.0 phylum Arthropoda root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Arthropoda root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Arthropoda root:Host-associated:Human:Digestive system 3.0 phylum Arthropoda root:Environmental:Aquatic:Freshwater 2.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -18008,14 +18309,13 @@ phylum Arthropoda root:Host-associated:Algae:Red algae 3.0 phylum Arthropoda root:Host-associated:Arthropoda:Digestive system:Gut 2.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 phylum Arthropoda root:Engineered:Lab enrichment:Defined media 1.0 -phylum Arthropoda root:Host-associated:Plants:Root 2.0 +phylum Arthropoda root:Host-associated:Plants:Root 3.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 phylum Arthropoda root:Engineered:Food production 2.0 phylum Arthropoda root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Arthropoda root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Arthropoda root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -phylum Arthropoda root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Arthropoda root:Host-associated:Mammals:Digestive system:Large intestine 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Arthropoda root:Environmental:Aquatic:Estuary 28.0 @@ -18033,14 +18333,13 @@ phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Marginal Sea 3.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Pelagic 5.0 +phylum Arthropoda root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Arthropoda root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -phylum Arthropoda root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 phylum Arthropoda root:Environmental:Terrestrial:Soil:Crop 1.0 phylum Arthropoda root:Host-associated:Insecta 4.0 phylum Arthropoda root:Engineered:Built environment 1.0 -phylum Arthropoda root:Engineered:Lab enrichment 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 phylum Arthropoda root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 @@ -18054,6 +18353,7 @@ phylum Arthropoda root:Environmental:Air 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 phylum Arthropoda root:Host-associated:Arthropoda 1.0 phylum Arthropoda root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +phylum Arthropoda root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 phylum Arthropoda root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 phylum Arthropoda root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 phylum Arthropoda root:Host-associated:Human:Circulatory system 1.0 @@ -18062,11 +18362,12 @@ phylum Arthropoda root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial phylum Arthropoda root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 phylum Arthropoda root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 phylum Arthropoda root:Host-associated:Microbial:Bacteria 1.0 +phylum Arthropoda root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Sediment 4.0 phylum Chlorophyta root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -phylum Chlorophyta root:Environmental:Aquatic:Marine 81.0 +phylum Chlorophyta root:Environmental:Aquatic:Marine 82.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Oceanic 28.0 phylum Chlorophyta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Chlorophyta root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -18077,12 +18378,13 @@ phylum Chlorophyta root:Engineered:Bioreactor 2.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Chlorophyta root:Mixed 1.0 phylum Chlorophyta root:Host-associated:Mammals 1.0 +phylum Chlorophyta root:Host-associated:Human:Digestive system:Intestine 1.0 phylum Chlorophyta root:Engineered:Wastewater 2.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 phylum Chlorophyta root:Host-associated:Plants:Rhizosphere 2.0 -phylum Chlorophyta root:Environmental:Terrestrial:Soil 3.0 +phylum Chlorophyta root:Environmental:Terrestrial:Soil 4.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Sediment 12.0 -phylum Chlorophyta root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +phylum Chlorophyta root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Chlorophyta root:Environmental:Aquatic:Sediment 1.0 phylum Chlorophyta root:Environmental:Aquatic 4.0 @@ -18104,12 +18406,13 @@ phylum Chlorophyta root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2. phylum Chlorophyta root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Pelagic 5.0 +phylum Chlorophyta root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -phylum Chlorophyta root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Ice 1.0 phylum Chlorophyta root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Chlorophyta root:Host-associated:Fish:Digestive system:Intestine 1.0 +phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Chlorophyta root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Chlorophyta root:Host-associated:Algae 1.0 phylum Chlorophyta root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 @@ -18119,7 +18422,9 @@ phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Lotic:Acidic 1.0 phylum Chlorophyta root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 phylum Chlorophyta root:Environmental:Air 1.0 phylum Chlorophyta root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 +phylum Chlorophyta root:Host-associated:Fungi 1.0 phylum Chlorophyta root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Chlorophyta root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 phylum Rotifera root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Rotifera root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Rotifera root:Environmental:Aquatic:Marine 3.0 @@ -18138,7 +18443,7 @@ phylum Rotifera root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Rotifera root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 class Maxillopoda root:Environmental:Aquatic:Freshwater:Lake 3.0 class Maxillopoda root:Environmental:Aquatic:Freshwater:Pond 2.0 -class Maxillopoda root:Environmental:Aquatic:Marine 71.0 +class Maxillopoda root:Environmental:Aquatic:Marine 72.0 class Maxillopoda root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 class Maxillopoda root:Environmental:Aquatic:Marine:Oceanic 21.0 class Maxillopoda root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -18213,7 +18518,7 @@ class Chitinophagia root:Environmental:Terrestrial:Soil:Agricultural 7.0 class Chitinophagia root:Engineered:Bioreactor 13.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 8.0 -class Chitinophagia root:Engineered:Wastewater:Activated Sludge 21.0 +class Chitinophagia root:Engineered:Wastewater:Activated Sludge 22.0 class Chitinophagia root:Mixed 8.0 class Chitinophagia root:Host-associated:Mammals 5.0 class Chitinophagia root:Host-associated:Amphibia 2.0 @@ -18222,14 +18527,14 @@ class Chitinophagia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30 class Chitinophagia root:Host-associated:Plants:Phylloplane 2.0 class Chitinophagia root:Host-associated:Plants:Rhizosphere 26.0 class Chitinophagia root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -class Chitinophagia root:Environmental:Terrestrial:Soil 29.0 +class Chitinophagia root:Environmental:Terrestrial:Soil 31.0 class Chitinophagia root:Environmental:Aquatic:Marine:Sediment 8.0 class Chitinophagia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Chitinophagia root:Environmental:Aquatic:Sediment 4.0 class Chitinophagia root:Environmental:Aquatic 2.0 class Chitinophagia root:Environmental:Terrestrial:Soil:Grasslands 1.0 class Chitinophagia root:Host-associated:Human:Digestive system 2.0 -class Chitinophagia root:Environmental:Aquatic:Freshwater 2.0 +class Chitinophagia root:Environmental:Aquatic:Freshwater 3.0 class Chitinophagia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class Chitinophagia root:Environmental:Aquatic:Marine:Coastal 5.0 class Chitinophagia root:Engineered:Solid waste:Composting 7.0 @@ -18248,14 +18553,14 @@ class Chitinophagia root:Environmental:Aquatic:Marine:Brackish 1.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 class Chitinophagia root:Engineered:Solid waste 1.0 class Chitinophagia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -class Chitinophagia root:Engineered:Wastewater:Water and sludge 3.0 +class Chitinophagia root:Engineered:Wastewater:Water and sludge 4.0 class Chitinophagia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 class Chitinophagia root:Host-associated:Reptile:Oral cavity 1.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Ice 2.0 class Chitinophagia root:Environmental:Terrestrial:Soil:Crop 1.0 class Chitinophagia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -class Chitinophagia root:Host-associated:Insecta 1.0 +class Chitinophagia root:Host-associated:Insecta 2.0 class Chitinophagia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Chitinophagia root:Engineered:Built environment 1.0 class Chitinophagia root:Host-associated:Birds:Digestive system 1.0 @@ -18289,9 +18594,11 @@ class Chlorophyceae root:Environmental:Aquatic:Marine 4.0 class Chlorophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 class Chlorophyceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 class Chlorophyceae root:Mixed 1.0 +class Chlorophyceae root:Host-associated:Human:Digestive system:Intestine 1.0 class Chlorophyceae root:Host-associated:Plants:Rhizosphere 2.0 class Chlorophyceae root:Environmental:Terrestrial:Soil 3.0 class Chlorophyceae root:Environmental:Aquatic:Marine:Sediment 1.0 +class Chlorophyceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Chlorophyceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Chlorophyceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 class Chlorophyceae root:Engineered:Solid waste:Composting 1.0 @@ -18299,17 +18606,18 @@ class Chlorophyceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Chlorophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Chlorophyceae root:Environmental:Aquatic:Freshwater:Ice 1.0 class Chlorophyceae root:Host-associated:Fish:Digestive system:Intestine 1.0 +class Chlorophyceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Chlorophyceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 class Chlorophyceae root:Environmental:Aquatic:Freshwater:Lotic:Acidic 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Lake 2.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Micrococcales root:Host-associated:Mammals:Digestive system:Fecal 4.0 -order Micrococcales root:Host-associated:Human:Digestive system:Oral:Saliva 18.0 +order Micrococcales root:Host-associated:Human:Digestive system:Oral:Saliva 19.0 order Micrococcales root:Host-associated:Birds:Digestive system:Fecal 3.0 order Micrococcales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 order Micrococcales root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -order Micrococcales root:Environmental:Aquatic:Marine 39.0 +order Micrococcales root:Environmental:Aquatic:Marine 41.0 order Micrococcales root:Host-associated:Fish 1.0 order Micrococcales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 order Micrococcales root:Environmental:Aquatic:Marine:Oceanic 4.0 @@ -18318,18 +18626,19 @@ order Micrococcales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Micrococcales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Micrococcales root:Environmental:Aquatic:Lentic:Brackish 1.0 order Micrococcales root:Host-associated:Human 4.0 -order Micrococcales root:Host-associated:Plants 12.0 +order Micrococcales root:Host-associated:Plants 13.0 order Micrococcales root:Environmental:Aquatic:Estuary:Sediment 3.0 order Micrococcales root:Environmental:Terrestrial:Soil:Agricultural 5.0 order Micrococcales root:Engineered:Bioreactor 20.0 +order Micrococcales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 -order Micrococcales root:Engineered:Wastewater:Activated Sludge 23.0 +order Micrococcales root:Engineered:Wastewater:Activated Sludge 24.0 order Micrococcales root:Host-associated:Human:Skin 20.0 order Micrococcales root:Environmental:Terrestrial:Soil:Permafrost 3.0 -order Micrococcales root:Mixed 10.0 +order Micrococcales root:Mixed 11.0 order Micrococcales root:Host-associated:Mammals 9.0 order Micrococcales root:Host-associated:Amphibia 2.0 -order Micrococcales root:Engineered:Food production:Fermented beverages 2.0 +order Micrococcales root:Engineered:Food production:Fermented beverages 3.0 order Micrococcales root:Engineered:Wastewater 5.0 order Micrococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 26.0 order Micrococcales root:Host-associated:Human:Digestive system:Oral 31.0 @@ -18338,15 +18647,17 @@ order Micrococcales root:Environmental:Terrestrial:Soil:Contaminated 3.0 order Micrococcales root:Host-associated:Plants:Phylloplane 2.0 order Micrococcales root:Host-associated:Plants:Rhizosphere 2.0 order Micrococcales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -order Micrococcales root:Environmental:Terrestrial:Soil 10.0 +order Micrococcales root:Environmental:Terrestrial:Soil 11.0 order Micrococcales root:Environmental:Aquatic:Marine:Sediment 12.0 order Micrococcales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Micrococcales root:Environmental:Aquatic:Sediment 3.0 order Micrococcales root:Environmental:Aquatic 1.0 +order Micrococcales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Micrococcales root:Engineered:Biogas plant:Wet fermentation 2.0 order Micrococcales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Micrococcales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 order Micrococcales root:Host-associated:Birds:Digestive system:Ceca 1.0 +order Micrococcales root:Host-associated:Plants:Rhizosphere:Soil 5.0 order Micrococcales root:Host-associated:Human:Digestive system 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater 2.0 order Micrococcales root:Environmental:Aquatic:Marine:Coastal 8.0 @@ -18361,7 +18672,6 @@ order Micrococcales root:Engineered:Lab enrichment:Defined media 2.0 order Micrococcales root:Host-associated:Plants:Root 3.0 order Micrococcales root:Engineered:Food production 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -order Micrococcales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Micrococcales root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Micrococcales root:Environmental:Aquatic:Estuary 10.0 @@ -18375,15 +18685,15 @@ order Micrococcales root:Host-associated:Human:Digestive system:Oral:Supragingiv order Micrococcales root:Environmental:Aquatic:Freshwater:Ice:Glacier 3.0 order Micrococcales root:Environmental:Aquatic:Marine:Brackish 10.0 order Micrococcales root:Engineered:Bioreactor:Continuous culture 1.0 -order Micrococcales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +order Micrococcales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 order Micrococcales root:Environmental:Aquatic:Marine:Pelagic 2.0 order Micrococcales root:Engineered:Wastewater:Water and sludge 2.0 -order Micrococcales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Micrococcales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Micrococcales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Ice 2.0 order Micrococcales root:Environmental:Terrestrial:Soil:Crop 2.0 -order Micrococcales root:Host-associated:Insecta 4.0 -order Micrococcales root:Engineered:Built environment 9.0 +order Micrococcales root:Host-associated:Insecta 5.0 +order Micrococcales root:Engineered:Built environment 10.0 order Micrococcales root:Host-associated:Birds:Digestive system 2.0 order Micrococcales root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 order Micrococcales root:Host-associated:Animal:Digestive system:Fecal 3.0 @@ -18396,7 +18706,6 @@ order Micrococcales root:Host-associated:Animal 2.0 order Micrococcales root:Engineered 1.0 order Micrococcales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 order Micrococcales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -order Micrococcales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Micrococcales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Micrococcales root:Host-associated:Fungi 1.0 order Micrococcales root:Host-associated:Human:Respiratory system 3.0 @@ -18404,7 +18713,7 @@ order Micrococcales root:Host-associated:Mammals:Digestive system:Oral cavity:Bu order Micrococcales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 order Micrococcales root:Engineered:Bioremediation:Hydrocarbon 1.0 order Micrococcales root:Engineered:Biotransformation 1.0 -order Micrococcales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +order Micrococcales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 order Micrococcales root:Host-associated:Mammals:Skin 1.0 order Micrococcales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 order Micrococcales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 @@ -18422,8 +18731,8 @@ family Cyclopidae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Cyclopidae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Cyclopidae root:Host-associated:Arthropoda 1.0 family Erythrobacteraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 -family Erythrobacteraceae root:Environmental:Aquatic:Marine 41.0 -family Erythrobacteraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Erythrobacteraceae root:Environmental:Aquatic:Marine 53.0 +family Erythrobacteraceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Erythrobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Erythrobacteraceae root:Environmental:Aquatic:Estuary:Sediment 2.0 family Erythrobacteraceae root:Mixed 1.0 @@ -18458,7 +18767,7 @@ genus Cryptomonas root:Environmental:Aquatic:Freshwater 1.0 genus Cryptomonas root:Environmental:Aquatic:Estuary 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Freshwater:Pond 2.0 -genus Candidatus Aquiluna root:Environmental:Aquatic:Marine 16.0 +genus Candidatus Aquiluna root:Environmental:Aquatic:Marine 17.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Oceanic 6.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Candidatus Aquiluna root:Host-associated:Plants 1.0 @@ -18470,15 +18779,17 @@ genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Coastal 7.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Estuary 12.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Brackish 1.0 -genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 +genus Candidatus Aquiluna root:Host-associated:Insecta 1.0 genus Candidatus Aquiluna root:Engineered:Built environment 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Candidatus Aquiluna root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 genus Algoriphagus root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Algoriphagus root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Algoriphagus root:Environmental:Aquatic:Marine 9.0 +genus Algoriphagus root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Algoriphagus root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Algoriphagus root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Algoriphagus root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -18534,10 +18845,10 @@ order Hydrogenophilales root:Environmental:Aquatic:Marine:Sediment 1.0 order Hydrogenophilales root:Environmental:Aquatic:Sediment 1.0 order Hydrogenophilales root:Engineered:Biogas plant:Wet fermentation 2.0 order Hydrogenophilales root:Environmental:Terrestrial:Soil:Wetlands 1.0 +order Hydrogenophilales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Hydrogenophilales root:Environmental:Aquatic:Thermal springs 1.0 order Hydrogenophilales root:Engineered:Solid waste:Composting 2.0 order Hydrogenophilales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Hydrogenophilales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Hydrogenophilales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Hydrogenophilales root:Engineered:Wastewater:Industrial wastewater 3.0 order Hydrogenophilales root:Host-associated:Insecta:Digestive system 1.0 @@ -18553,14 +18864,14 @@ order Hydrogenophilales root:Environmental:Terrestrial:Soil:Loam:Agricultural 1. order Hydrogenophilales root:Environmental:Terrestrial:Volcanic 1.0 order Hydrogenophilales root:Host-associated:Spiralia 1.0 family Methylococcaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 -family Methylococcaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 +family Methylococcaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Methylococcaceae root:Environmental:Aquatic:Marine 2.0 family Methylococcaceae root:Host-associated:Plants 1.0 family Methylococcaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Methylococcaceae root:Engineered:Bioreactor 2.0 family Methylococcaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Methylococcaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Methylococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Methylococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Methylococcaceae root:Environmental:Terrestrial:Soil 1.0 family Methylococcaceae root:Environmental:Aquatic:Marine:Sediment 8.0 family Methylococcaceae root:Environmental:Aquatic:Sediment 5.0 @@ -18602,8 +18913,8 @@ family Crenotrichaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Crenotrichaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 family Crenotrichaceae root:Environmental:Aquatic:Sediment 3.0 family Crenotrichaceae root:Environmental:Aquatic 1.0 -family Crenotrichaceae root:Environmental:Aquatic:Freshwater 1.0 family Crenotrichaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Crenotrichaceae root:Environmental:Aquatic:Freshwater 1.0 family Crenotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 family Crenotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Crenotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -18618,11 +18929,11 @@ family Hydrogenophilaceae root:Environmental:Terrestrial:Soil 6.0 family Hydrogenophilaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Hydrogenophilaceae root:Environmental:Aquatic:Sediment 2.0 family Hydrogenophilaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 +family Hydrogenophilaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Hydrogenophilaceae root:Environmental:Aquatic:Freshwater 1.0 family Hydrogenophilaceae root:Environmental:Aquatic:Thermal springs 1.0 family Hydrogenophilaceae root:Engineered:Solid waste:Composting 2.0 family Hydrogenophilaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Hydrogenophilaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Hydrogenophilaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family Hydrogenophilaceae root:Engineered:Wastewater:Industrial wastewater 3.0 family Hydrogenophilaceae root:Host-associated:Insecta:Digestive system 1.0 @@ -18646,6 +18957,7 @@ family Microcoleaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Microcoleaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Microcoleaceae root:Environmental:Aquatic 3.0 family Microcoleaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Microcoleaceae root:Environmental:Aquatic:Freshwater 1.0 family Microcoleaceae root:Engineered:Solid waste:Composting 1.0 family Microcoleaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Microcoleaceae root:Host-associated:Microbial:Bacteria 1.0 @@ -18660,6 +18972,7 @@ family Sterolibacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment family Sterolibacteriaceae root:Engineered:Wastewater:Water and sludge 1.0 family Sterolibacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Sterolibacteriaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Sterolibacteriaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Sterolibacteriaceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Lentimicrobiaceae root:Environmental:Aquatic:Freshwater:Lake 2.0 family Lentimicrobiaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 @@ -18688,6 +19001,7 @@ family Lentimicrobiaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Lentimicrobiaceae root:Engineered:Wastewater:Water and sludge 1.0 family Lentimicrobiaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Lentimicrobiaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 +family Lentimicrobiaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Lentimicrobiaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 family Lentimicrobiaceae root:Host-associated:Arthropoda 1.0 family Lentimicrobiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -18722,6 +19036,8 @@ genus Sulfuritalea root:Engineered:Wastewater:Water and sludge 1.0 genus Sulfuritalea root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Sulfuritalea root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Sulfuritalea root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Sulfuritalea root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +genus Sulfuritalea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Desulfomonile root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Desulfomonile root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Desulfomonile root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -18752,6 +19068,7 @@ genus Sulfurimonas root:Environmental:Aquatic:Marine:Sediment 19.0 genus Sulfurimonas root:Environmental:Aquatic:Sediment 3.0 genus Sulfurimonas root:Environmental:Aquatic 1.0 genus Sulfurimonas root:Host-associated:Porifera 1.0 +genus Sulfurimonas root:Engineered:Lab enrichment 1.0 genus Sulfurimonas root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 5.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -18768,9 +19085,9 @@ genus Sulfurimonas root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Sulfurimonas root:Environmental:Aquatic:Freshwater:Groundwater 3.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Sulfurimonas root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 genus Sulfurimonas root:Host-associated:Fish:Digestive system:Intestine 1.0 -genus Sulfurimonas root:Engineered:Lab enrichment 1.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Sulfurimonas root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 3.0 genus Sulfurimonas root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -18821,6 +19138,7 @@ species Sulfuritalea hydrogenivorans root:Engineered:Bioreactor 1.0 species Sulfuritalea hydrogenivorans root:Engineered:Wastewater:Activated Sludge 3.0 species Sulfuritalea hydrogenivorans root:Engineered:Wastewater:Water and sludge 1.0 species Sulfuritalea hydrogenivorans root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Sulfuritalea hydrogenivorans root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Chloroflexaceae bacterium sp-jj-1 root:Environmental:Aquatic:Freshwater:Lake 1.0 species Chloroflexaceae bacterium sp-jj-1 root:Host-associated:Plants:Root 1.0 species Chloroflexaceae bacterium sp-jj-1 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -18856,9 +19174,9 @@ phylum Crenarchaeota root:Host-associated:Human:Digestive system:Oral 1.0 phylum Crenarchaeota root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Crenarchaeota root:Environmental:Terrestrial:Soil:Silt 1.0 phylum Crenarchaeota root:Host-associated:Plants:Rhizosphere 9.0 -phylum Crenarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 +phylum Crenarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 9.0 phylum Crenarchaeota root:Environmental:Terrestrial:Soil 52.0 -phylum Crenarchaeota root:Environmental:Aquatic:Marine:Sediment 69.0 +phylum Crenarchaeota root:Environmental:Aquatic:Marine:Sediment 72.0 phylum Crenarchaeota root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 phylum Crenarchaeota root:Environmental:Aquatic:Sediment 4.0 phylum Crenarchaeota root:Environmental:Aquatic 1.0 @@ -18867,6 +19185,7 @@ phylum Crenarchaeota root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 phylum Crenarchaeota root:Host-associated:Porifera 3.0 phylum Crenarchaeota root:Environmental:Terrestrial:Soil:Wetlands 3.0 phylum Crenarchaeota root:Environmental:Terrestrial:Soil:Grasslands 6.0 +phylum Crenarchaeota root:Host-associated:Plants:Rhizosphere:Soil 7.0 phylum Crenarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 phylum Crenarchaeota root:Environmental:Aquatic:Thermal springs 3.0 phylum Crenarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 4.0 @@ -18879,7 +19198,6 @@ phylum Crenarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents 6.0 phylum Crenarchaeota root:Environmental:Aquatic:Marine:Oil-contaminated sediment 5.0 phylum Crenarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 3.0 phylum Crenarchaeota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 10.0 -phylum Crenarchaeota root:Host-associated:Plants:Rhizosphere:Soil 7.0 phylum Crenarchaeota root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Crenarchaeota root:Environmental:Aquatic:Estuary 1.0 phylum Crenarchaeota root:Host-associated:Animal:Digestive system 1.0 @@ -18922,7 +19240,7 @@ phylum Crenarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:H phylum Crenarchaeota root:Host-associated:Fish:Skin 1.0 phylum Crenarchaeota root:Environmental:Aquatic:Freshwater:Storm water 1.0 phylum Crenarchaeota root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -phylum Crenarchaeota root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +phylum Crenarchaeota root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 phylum Crenarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 phylum Crenarchaeota root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Crenarchaeota root:Engineered:Biotransformation 1.0 @@ -18965,82 +19283,87 @@ class Rubrobacteria root:Mixed 3.0 class Rubrobacteria root:Engineered:Wastewater 1.0 class Rubrobacteria root:Engineered:Food production:Dairy products 3.0 class Rubrobacteria root:Environmental:Terrestrial:Soil:Contaminated 3.0 -class Rubrobacteria root:Host-associated:Plants:Rhizosphere 22.0 +class Rubrobacteria root:Host-associated:Plants:Rhizosphere 24.0 class Rubrobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Rubrobacteria root:Environmental:Terrestrial:Soil 21.0 class Rubrobacteria root:Environmental:Aquatic:Marine:Sediment 2.0 class Rubrobacteria root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Rubrobacteria root:Environmental:Aquatic:Sediment 3.0 class Rubrobacteria root:Environmental:Terrestrial:Soil:Grasslands 2.0 +class Rubrobacteria root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Rubrobacteria root:Environmental:Aquatic:Marine:Coastal 1.0 class Rubrobacteria root:Environmental:Terrestrial:Soil:Desert 7.0 class Rubrobacteria root:Host-associated:Plants:Root 1.0 class Rubrobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Rubrobacteria root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Rubrobacteria root:Environmental:Aquatic:Thermal springs:Sediment 1.0 class Rubrobacteria root:Environmental:Terrestrial:Soil:Crop 2.0 class Rubrobacteria root:Host-associated:Birds 1.0 class Rubrobacteria root:Engineered 1.0 class Rubrobacteria root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +class Rubrobacteria root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lake 2.0 class Bacilli root:Environmental:Aquatic:Freshwater:Pond 1.0 class Bacilli root:Environmental:Aquatic:Freshwater:Sediment 6.0 -class Bacilli root:Host-associated:Mammals:Digestive system:Fecal 56.0 -class Bacilli root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +class Bacilli root:Host-associated:Mammals:Digestive system:Fecal 59.0 +class Bacilli root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 class Bacilli root:Host-associated:Birds:Digestive system:Fecal 13.0 class Bacilli root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 class Bacilli root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -class Bacilli root:Host-associated:Human:Digestive system:Large intestine:Fecal 197.0 -class Bacilli root:Environmental:Aquatic:Marine 42.0 +class Bacilli root:Host-associated:Human:Digestive system:Large intestine:Fecal 208.0 +class Bacilli root:Environmental:Aquatic:Marine 44.0 class Bacilli root:Host-associated:Fish 5.0 class Bacilli root:Environmental:Aquatic:Marine:Oceanic:Sediment 6.0 -class Bacilli root:Environmental:Aquatic:Marine:Oceanic 7.0 -class Bacilli root:Host-associated:Mammals:Digestive system 30.0 +class Bacilli root:Environmental:Aquatic:Marine:Oceanic 8.0 +class Bacilli root:Host-associated:Mammals:Digestive system 31.0 class Bacilli root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 13.0 class Bacilli root:Environmental:Terrestrial:Geologic 1.0 class Bacilli root:Environmental:Terrestrial:Soil:Forest soil 5.0 -class Bacilli root:Host-associated:Human 22.0 +class Bacilli root:Host-associated:Human 23.0 class Bacilli root:Host-associated:Plants 32.0 class Bacilli root:Environmental:Aquatic:Estuary:Sediment 3.0 class Bacilli root:Engineered:Food production:Silage fermentation 1.0 -class Bacilli root:Host-associated:Human:Digestive system:Large intestine 14.0 +class Bacilli root:Host-associated:Human:Digestive system:Large intestine 15.0 class Bacilli root:Environmental:Terrestrial:Soil:Agricultural 22.0 class Bacilli root:Engineered:Bioreactor 61.0 -class Bacilli root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +class Bacilli root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 6.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lotic:Sediment 10.0 class Bacilli root:Engineered:Wastewater:Activated Sludge 22.0 class Bacilli root:Host-associated:Human:Skin 30.0 class Bacilli root:Environmental:Terrestrial:Soil:Permafrost 1.0 -class Bacilli root:Mixed 16.0 +class Bacilli root:Mixed 18.0 class Bacilli root:Host-associated:Mammals 18.0 class Bacilli root:Host-associated:Amphibia 3.0 -class Bacilli root:Host-associated:Human:Digestive system:Intestine 3.0 -class Bacilli root:Engineered:Food production:Fermented beverages 14.0 +class Bacilli root:Host-associated:Human:Digestive system:Intestine 4.0 +class Bacilli root:Engineered:Food production:Fermented beverages 15.0 class Bacilli root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Bacilli root:Engineered:Wastewater 12.0 class Bacilli root:Host-associated:Human:Reproductive system:Vagina 16.0 class Bacilli root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -class Bacilli root:Host-associated:Human:Digestive system:Oral 64.0 -class Bacilli root:Engineered:Food production:Dairy products 27.0 +class Bacilli root:Host-associated:Human:Digestive system:Oral 65.0 +class Bacilli root:Engineered:Food production:Dairy products 29.0 class Bacilli root:Environmental:Terrestrial:Soil:Contaminated 6.0 class Bacilli root:Host-associated:Plants:Phylloplane 8.0 -class Bacilli root:Host-associated:Plants:Rhizosphere 32.0 +class Bacilli root:Host-associated:Plants:Rhizosphere 34.0 class Bacilli root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 -class Bacilli root:Environmental:Terrestrial:Soil 107.0 +class Bacilli root:Environmental:Terrestrial:Soil 108.0 class Bacilli root:Environmental:Aquatic:Marine:Sediment 52.0 -class Bacilli root:Engineered:Modeled:Simulated communities (microbial mixture) 10.0 +class Bacilli root:Engineered:Modeled:Simulated communities (microbial mixture) 12.0 +class Bacilli root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lotic 3.0 class Bacilli root:Environmental:Aquatic:Sediment 8.0 class Bacilli root:Environmental:Aquatic 4.0 +class Bacilli root:Host-associated:Mammals:Digestive system:Midgut 4.0 class Bacilli root:Engineered:Biogas plant:Wet fermentation 7.0 class Bacilli root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 class Bacilli root:Host-associated:Porifera 2.0 +class Bacilli root:Engineered:Lab enrichment 6.0 class Bacilli root:Host-associated:Mammals:Digestive system:Stomach:Rumen 11.0 class Bacilli root:Environmental:Terrestrial:Soil:Wetlands 3.0 class Bacilli root:Engineered:Lab Synthesis 1.0 class Bacilli root:Environmental:Terrestrial:Soil:Grasslands 6.0 class Bacilli root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 class Bacilli root:Host-associated:Birds:Digestive system:Ceca 10.0 +class Bacilli root:Host-associated:Plants:Rhizosphere:Soil 18.0 class Bacilli root:Host-associated:Human:Digestive system 35.0 class Bacilli root:Environmental:Aquatic:Freshwater 4.0 class Bacilli root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -19054,7 +19377,7 @@ class Bacilli root:Host-associated:Human:Respiratory system:Pulmonary system:Spu class Bacilli root:Environmental:Aquatic:Freshwater:Drinking water 3.0 class Bacilli root:Environmental:Terrestrial:Soil:Desert 9.0 class Bacilli root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -class Bacilli root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 57.0 +class Bacilli root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 58.0 class Bacilli root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 class Bacilli root:Host-associated:Algae:Red algae 2.0 class Bacilli root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 @@ -19067,10 +19390,9 @@ class Bacilli root:Engineered:Food production 16.0 class Bacilli root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Bacilli root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -class Bacilli root:Host-associated:Plants:Rhizosphere:Soil 16.0 -class Bacilli root:Host-associated:Mammals:Digestive system:Large intestine 12.0 +class Bacilli root:Host-associated:Mammals:Digestive system:Large intestine 13.0 class Bacilli root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -class Bacilli root:Engineered:Food production:Fermented seafood 2.0 +class Bacilli root:Engineered:Food production:Fermented seafood 3.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lentic 2.0 class Bacilli root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 class Bacilli root:Host-associated:Human:Skin:Naris 1.0 @@ -19079,10 +19401,9 @@ class Bacilli root:Host-associated:Animal:Digestive system 6.0 class Bacilli root:Environmental:Terrestrial:Soil:Oil-contaminated 5.0 class Bacilli root:Engineered:Wastewater:Industrial wastewater 4.0 class Bacilli root:Engineered:Modeled 4.0 -class Bacilli root:Host-associated:Insecta:Digestive system 8.0 +class Bacilli root:Host-associated:Insecta:Digestive system 9.0 class Bacilli root:Host-associated 6.0 class Bacilli root:Host-associated:Mollusca 1.0 -class Bacilli root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Bacilli root:Host-associated:Fish:Digestive system 1.0 class Bacilli root:Environmental:Terrestrial:Soil:Mine 3.0 class Bacilli root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 @@ -19099,11 +19420,12 @@ class Bacilli root:Host-associated:Human:Reproductive system:Female 2.0 class Bacilli root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 class Bacilli root:Environmental:Aquatic:Thermal springs:Sediment 4.0 class Bacilli root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -class Bacilli root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +class Bacilli root:Environmental:Aquatic:Freshwater:Groundwater 4.0 class Bacilli root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Bacilli root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -class Bacilli root:Engineered:Wastewater:Water and sludge 14.0 +class Bacilli root:Engineered:Wastewater:Water and sludge 15.0 class Bacilli root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Bacilli root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 class Bacilli root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 class Bacilli root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 3.0 class Bacilli root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -19112,17 +19434,15 @@ class Bacilli root:Environmental:Terrestrial 1.0 class Bacilli root:Host-associated:Mammals:Gastrointestinal tract 5.0 class Bacilli root:Engineered:Lab Synthesis:Genetic cross 1.0 class Bacilli root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -class Bacilli root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 class Bacilli root:Environmental:Aquatic:Freshwater:Ice 4.0 class Bacilli root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Bacilli root:Environmental:Terrestrial:Soil:Crop 2.0 class Bacilli root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 class Bacilli root:Host-associated:Fish:Digestive system:Intestine 4.0 -class Bacilli root:Host-associated:Insecta 11.0 +class Bacilli root:Host-associated:Insecta 12.0 class Bacilli root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -class Bacilli root:Engineered:Built environment 12.0 +class Bacilli root:Engineered:Built environment 13.0 class Bacilli root:Host-associated:Birds:Digestive system 7.0 -class Bacilli root:Engineered:Lab enrichment 6.0 class Bacilli root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Bacilli root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 class Bacilli root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -19145,7 +19465,7 @@ class Bacilli root:Engineered:Industrial production 1.0 class Bacilli root:Host-associated:Fish:Skin 1.0 class Bacilli root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 class Bacilli root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -class Bacilli root:Host-associated:Mammals:Digestive system:Midgut 3.0 +class Bacilli root:Host-associated:Plants:Rhizoplane:Soil 1.0 class Bacilli root:Environmental:Aquatic:Freshwater:Storm water 1.0 class Bacilli root:Environmental:Air 1.0 class Bacilli root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 @@ -19157,15 +19477,18 @@ class Bacilli root:Engineered:Bioremediation 1.0 class Bacilli root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Bacilli root:Host-associated:Human:Respiratory system 4.0 class Bacilli root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Bacilli root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Bacilli root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 class Bacilli root:Engineered:Bioremediation:Hydrocarbon 1.0 class Bacilli root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 class Bacilli root:Engineered:Biotransformation 4.0 class Bacilli root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 +class Bacilli root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 class Bacilli root:Host-associated:Mammals:Skin 3.0 class Bacilli root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 class Bacilli root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 class Bacilli root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +class Bacilli root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Bacilli root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 class Bacilli root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 class Bacilli root:Host-associated:Birds:Respiratory system 2.0 @@ -19202,7 +19525,7 @@ class Thermoplasmata root:Environmental:Aquatic:Freshwater:Lake 3.0 class Thermoplasmata root:Environmental:Aquatic:Freshwater:Sediment 2.0 class Thermoplasmata root:Host-associated:Mammals:Digestive system:Fecal 1.0 class Thermoplasmata root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 3.0 -class Thermoplasmata root:Environmental:Aquatic:Marine 28.0 +class Thermoplasmata root:Environmental:Aquatic:Marine 32.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Oceanic 12.0 class Thermoplasmata root:Host-associated:Mammals:Digestive system 2.0 @@ -19220,19 +19543,22 @@ class Thermoplasmata root:Environmental:Aquatic:Non-marine Saline and Alkaline 1 class Thermoplasmata root:Environmental:Terrestrial:Soil:Permafrost 1.0 class Thermoplasmata root:Mixed 1.0 class Thermoplasmata root:Engineered:Food production:Fermented beverages 3.0 +class Thermoplasmata root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 class Thermoplasmata root:Environmental:Terrestrial:Soil:Silt 1.0 class Thermoplasmata root:Host-associated:Plants:Rhizosphere 1.0 -class Thermoplasmata root:Environmental:Aquatic:Marine:Coastal:Sediment 7.0 +class Thermoplasmata root:Environmental:Aquatic:Marine:Coastal:Sediment 8.0 class Thermoplasmata root:Environmental:Terrestrial:Soil 8.0 -class Thermoplasmata root:Environmental:Aquatic:Marine:Sediment 50.0 +class Thermoplasmata root:Environmental:Aquatic:Marine:Sediment 52.0 class Thermoplasmata root:Environmental:Aquatic:Sediment 1.0 class Thermoplasmata root:Environmental:Aquatic 1.0 class Thermoplasmata root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 class Thermoplasmata root:Host-associated:Porifera 1.0 +class Thermoplasmata root:Engineered:Lab enrichment 1.0 class Thermoplasmata root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 class Thermoplasmata root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Thermoplasmata root:Environmental:Terrestrial:Soil:Grasslands 2.0 class Thermoplasmata root:Host-associated:Birds:Digestive system:Ceca 1.0 +class Thermoplasmata root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 class Thermoplasmata root:Environmental:Aquatic:Thermal springs 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -19240,20 +19566,21 @@ class Thermoplasmata root:Environmental:Aquatic:Marine:Coastal 8.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Cold seeps 4.0 class Thermoplasmata root:Engineered:Solid waste:Composting 1.0 class Thermoplasmata root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 +class Thermoplasmata root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 class Thermoplasmata root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -class Thermoplasmata root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Thermoplasmata root:Environmental:Aquatic:Estuary 1.0 class Thermoplasmata root:Host-associated:Mollusca 1.0 class Thermoplasmata root:Engineered:Bioreactor:Continuous culture 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 class Thermoplasmata root:Environmental:Aquatic:Freshwater:Groundwater 4.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 +class Thermoplasmata root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +class Thermoplasmata root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Thermoplasmata root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Thermoplasmata root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -class Thermoplasmata root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -class Thermoplasmata root:Engineered:Lab enrichment 1.0 class Thermoplasmata root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Thermoplasmata root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 class Thermoplasmata root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -19310,8 +19637,10 @@ order Enterobacteriales root:Engineered:Modeled:Simulated communities (microbial order Enterobacteriales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Enterobacteriales root:Environmental:Aquatic 2.0 order Enterobacteriales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +order Enterobacteriales root:Engineered:Lab enrichment 5.0 order Enterobacteriales root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Enterobacteriales root:Host-associated:Birds:Digestive system:Ceca 2.0 +order Enterobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Enterobacteriales root:Host-associated:Human:Digestive system 2.0 order Enterobacteriales root:Environmental:Aquatic:Freshwater 1.0 order Enterobacteriales root:Engineered:Solid waste:Composting 1.0 @@ -19321,14 +19650,13 @@ order Enterobacteriales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Enterobacteriales root:Host-associated:Plants:Root 3.0 order Enterobacteriales root:Engineered:Food production 10.0 order Enterobacteriales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -order Enterobacteriales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Enterobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 order Enterobacteriales root:Engineered:Food production:Fermented seafood 1.0 order Enterobacteriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 order Enterobacteriales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Enterobacteriales root:Engineered:Wastewater:Industrial wastewater 1.0 order Enterobacteriales root:Engineered:Modeled 2.0 -order Enterobacteriales root:Host-associated:Insecta:Digestive system 3.0 +order Enterobacteriales root:Host-associated:Insecta:Digestive system 4.0 order Enterobacteriales root:Host-associated 4.0 order Enterobacteriales root:Environmental:Terrestrial:Soil:Sand 2.0 order Enterobacteriales root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -19342,7 +19670,6 @@ order Enterobacteriales root:Host-associated:Birds:Digestive system:Digestive tu order Enterobacteriales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Enterobacteriales root:Host-associated:Insecta 4.0 order Enterobacteriales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -order Enterobacteriales root:Engineered:Lab enrichment 5.0 order Enterobacteriales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Enterobacteriales root:Engineered:Modeled:Simulated communities (DNA mixture) 2.0 order Enterobacteriales root:Engineered:Food production:Fermented vegetables 6.0 @@ -19383,14 +19710,14 @@ order Rubrobacterales root:Host-associated:Plants:Rhizosphere 1.0 order Rubrobacterales root:Environmental:Terrestrial:Soil 11.0 order Rubrobacterales root:Environmental:Aquatic:Sediment 1.0 order Rubrobacterales root:Environmental:Terrestrial:Soil:Grasslands 2.0 -order Rubrobacterales root:Environmental:Terrestrial:Soil:Desert 6.0 order Rubrobacterales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Rubrobacterales root:Environmental:Terrestrial:Soil:Desert 6.0 order Rubrobacterales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order Rubrobacterales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Bacillales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Bacillales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Bacillales root:Environmental:Aquatic:Freshwater:Sediment 7.0 -order Bacillales root:Host-associated:Mammals:Digestive system:Fecal 16.0 +order Bacillales root:Host-associated:Mammals:Digestive system:Fecal 17.0 order Bacillales root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 order Bacillales root:Host-associated:Birds:Digestive system:Fecal 7.0 order Bacillales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 @@ -19399,7 +19726,7 @@ order Bacillales root:Host-associated:Human:Digestive system:Large intestine:Fec order Bacillales root:Environmental:Aquatic:Marine 22.0 order Bacillales root:Host-associated:Fish 3.0 order Bacillales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -order Bacillales root:Environmental:Aquatic:Marine:Oceanic 4.0 +order Bacillales root:Environmental:Aquatic:Marine:Oceanic 5.0 order Bacillales root:Host-associated:Mammals:Digestive system 12.0 order Bacillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 13.0 order Bacillales root:Environmental:Terrestrial:Geologic 1.0 @@ -19418,31 +19745,35 @@ order Bacillales root:Environmental:Terrestrial:Soil:Permafrost 2.0 order Bacillales root:Mixed 15.0 order Bacillales root:Host-associated:Mammals 17.0 order Bacillales root:Host-associated:Amphibia 2.0 -order Bacillales root:Engineered:Food production:Fermented beverages 9.0 +order Bacillales root:Host-associated:Human:Digestive system:Intestine 1.0 +order Bacillales root:Engineered:Food production:Fermented beverages 10.0 order Bacillales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Bacillales root:Engineered:Wastewater 4.0 order Bacillales root:Host-associated:Human:Reproductive system:Vagina 11.0 order Bacillales root:Host-associated:Human:Digestive system:Oral 27.0 -order Bacillales root:Engineered:Food production:Dairy products 25.0 +order Bacillales root:Engineered:Food production:Dairy products 26.0 order Bacillales root:Environmental:Terrestrial:Soil:Contaminated 5.0 order Bacillales root:Host-associated:Plants:Phylloplane 4.0 -order Bacillales root:Host-associated:Plants:Rhizosphere 31.0 +order Bacillales root:Host-associated:Plants:Rhizosphere 33.0 order Bacillales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -order Bacillales root:Environmental:Terrestrial:Soil 89.0 +order Bacillales root:Environmental:Terrestrial:Soil 90.0 order Bacillales root:Environmental:Aquatic:Marine:Sediment 46.0 -order Bacillales root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +order Bacillales root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 order Bacillales root:Environmental:Aquatic:Freshwater:Lotic 2.0 order Bacillales root:Environmental:Aquatic:Sediment 5.0 order Bacillales root:Environmental:Aquatic 1.0 +order Bacillales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Bacillales root:Engineered:Biogas plant:Wet fermentation 3.0 order Bacillales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 order Bacillales root:Host-associated:Porifera 2.0 +order Bacillales root:Engineered:Lab enrichment 4.0 order Bacillales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Bacillales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Bacillales root:Engineered:Lab Synthesis 1.0 order Bacillales root:Environmental:Terrestrial:Soil:Grasslands 4.0 order Bacillales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 order Bacillales root:Host-associated:Birds:Digestive system:Ceca 4.0 +order Bacillales root:Host-associated:Plants:Rhizosphere:Soil 11.0 order Bacillales root:Host-associated:Human:Digestive system 9.0 order Bacillales root:Environmental:Aquatic:Freshwater 1.0 order Bacillales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -19465,8 +19796,7 @@ order Bacillales root:Engineered:Food production 12.0 order Bacillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 order Bacillales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 order Bacillales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -order Bacillales root:Host-associated:Plants:Rhizosphere:Soil 11.0 -order Bacillales root:Host-associated:Mammals:Digestive system:Large intestine 5.0 +order Bacillales root:Host-associated:Mammals:Digestive system:Large intestine 6.0 order Bacillales root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 order Bacillales root:Engineered:Food production:Fermented seafood 2.0 order Bacillales root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -19476,7 +19806,7 @@ order Bacillales root:Host-associated:Animal:Digestive system 2.0 order Bacillales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Bacillales root:Engineered:Wastewater:Industrial wastewater 1.0 order Bacillales root:Engineered:Modeled 4.0 -order Bacillales root:Host-associated:Insecta:Digestive system 3.0 +order Bacillales root:Host-associated:Insecta:Digestive system 4.0 order Bacillales root:Host-associated 3.0 order Bacillales root:Environmental:Terrestrial:Soil:Mine 3.0 order Bacillales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 @@ -19489,23 +19819,22 @@ order Bacillales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 order Bacillales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Bacillales root:Environmental:Aquatic:Thermal springs:Sediment 3.0 order Bacillales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -order Bacillales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +order Bacillales root:Environmental:Aquatic:Freshwater:Groundwater 4.0 order Bacillales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Bacillales root:Engineered:Wastewater:Water and sludge 2.0 +order Bacillales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 order Bacillales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 order Bacillales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 3.0 order Bacillales root:Host-associated:Mammals:Gastrointestinal tract 1.0 order Bacillales root:Engineered:Lab Synthesis:Genetic cross 1.0 order Bacillales root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -order Bacillales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 order Bacillales root:Environmental:Aquatic:Freshwater:Ice 3.0 order Bacillales root:Environmental:Terrestrial:Soil:Crop 2.0 order Bacillales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 order Bacillales root:Host-associated:Fish:Digestive system:Intestine 3.0 order Bacillales root:Host-associated:Insecta 5.0 -order Bacillales root:Engineered:Built environment 11.0 +order Bacillales root:Engineered:Built environment 12.0 order Bacillales root:Host-associated:Birds:Digestive system 5.0 -order Bacillales root:Engineered:Lab enrichment 4.0 order Bacillales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Bacillales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Bacillales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -19527,18 +19856,20 @@ order Bacillales root:Engineered:Industrial production 1.0 order Bacillales root:Host-associated:Fish:Skin 1.0 order Bacillales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 order Bacillales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -order Bacillales root:Host-associated:Mammals:Digestive system:Midgut 2.0 +order Bacillales root:Host-associated:Plants:Rhizoplane:Soil 1.0 order Bacillales root:Environmental:Aquatic:Freshwater:Storm water 1.0 order Bacillales root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 order Bacillales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Bacillales root:Host-associated:Arthropoda 2.0 order Bacillales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 order Bacillales root:Host-associated:Human:Respiratory system 4.0 +order Bacillales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Bacillales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order Bacillales root:Engineered:Bioremediation:Hydrocarbon 1.0 order Bacillales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 order Bacillales root:Engineered:Biotransformation 2.0 order Bacillales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 +order Bacillales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Bacillales root:Host-associated:Mammals:Skin 2.0 order Bacillales root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 order Bacillales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 @@ -19600,10 +19931,10 @@ order E2 root:Host-associated:Protozoa 1.0 order Oceanospirillales root:Environmental:Aquatic:Freshwater:Lake 5.0 order Oceanospirillales root:Environmental:Aquatic:Freshwater:Pond 3.0 order Oceanospirillales root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -order Oceanospirillales root:Environmental:Aquatic:Marine 178.0 +order Oceanospirillales root:Environmental:Aquatic:Marine 197.0 order Oceanospirillales root:Host-associated:Fish 3.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic 46.0 +order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic 47.0 order Oceanospirillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Oceanospirillales root:Environmental:Aquatic:Lentic:Brackish 2.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 11.0 @@ -19611,13 +19942,13 @@ order Oceanospirillales root:Host-associated:Plants 7.0 order Oceanospirillales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Oceanospirillales root:Environmental:Terrestrial:Soil:Agricultural 2.0 order Oceanospirillales root:Engineered:Bioreactor 5.0 -order Oceanospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +order Oceanospirillales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 order Oceanospirillales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 5.0 order Oceanospirillales root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 order Oceanospirillales root:Host-associated:Human:Skin 2.0 order Oceanospirillales root:Mixed 6.0 order Oceanospirillales root:Host-associated:Mammals 1.0 -order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 10.0 +order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 11.0 order Oceanospirillales root:Engineered:Food production:Dairy products 7.0 order Oceanospirillales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Oceanospirillales root:Host-associated:Plants:Phylloplane 2.0 @@ -19630,6 +19961,7 @@ order Oceanospirillales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Oceanospirillales root:Environmental:Aquatic:Sediment 3.0 order Oceanospirillales root:Environmental:Aquatic 4.0 order Oceanospirillales root:Host-associated:Porifera 8.0 +order Oceanospirillales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Oceanospirillales root:Host-associated:Human:Digestive system 1.0 order Oceanospirillales root:Environmental:Aquatic:Freshwater 1.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -19644,7 +19976,6 @@ order Oceanospirillales root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 order Oceanospirillales root:Engineered:Food production 4.0 order Oceanospirillales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Oceanospirillales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Oceanospirillales root:Engineered:Food production:Fermented seafood 1.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 4.0 order Oceanospirillales root:Environmental:Aquatic:Estuary 9.0 @@ -19658,20 +19989,21 @@ order Oceanospirillales root:Engineered:Biotransformation:Microbial enhanced oil order Oceanospirillales root:Host-associated:Mollusca 3.0 order Oceanospirillales root:Environmental:Terrestrial:Soil:Sand 4.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Brackish 10.0 +order Oceanospirillales root:Engineered:Bioreactor:Continuous culture 1.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 6.0 order Oceanospirillales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 4.0 -order Oceanospirillales root:Environmental:Aquatic:Freshwater:Groundwater 5.0 -order Oceanospirillales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +order Oceanospirillales root:Environmental:Aquatic:Freshwater:Groundwater 6.0 +order Oceanospirillales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Pelagic 9.0 order Oceanospirillales root:Engineered:Wastewater:Water and sludge 2.0 -order Oceanospirillales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +order Oceanospirillales root:Engineered:Lab enrichment:Defined media:Marine media 2.0 +order Oceanospirillales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Oceanospirillales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 order Oceanospirillales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -order Oceanospirillales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 order Oceanospirillales root:Environmental:Terrestrial:Soil:Crop 1.0 order Oceanospirillales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Oceanospirillales root:Host-associated:Insecta 3.0 @@ -19708,14 +20040,15 @@ order Oceanospirillales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminate order Oceanospirillales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Oceanospirillales root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 -family Enterobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 18.0 +family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 +family Enterobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 19.0 family Enterobacteriaceae root:Host-associated:Birds:Digestive system:Fecal 4.0 -family Enterobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 96.0 +family Enterobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 99.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine 15.0 family Enterobacteriaceae root:Host-associated:Fish 2.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 -family Enterobacteriaceae root:Host-associated:Mammals:Digestive system 7.0 +family Enterobacteriaceae root:Host-associated:Mammals:Digestive system 8.0 family Enterobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 family Enterobacteriaceae root:Environmental:Terrestrial:Geologic 2.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Forest soil 4.0 @@ -19735,25 +20068,30 @@ family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 family Enterobacteriaceae root:Mixed 4.0 family Enterobacteriaceae root:Host-associated:Mammals 4.0 family Enterobacteriaceae root:Host-associated:Amphibia 2.0 -family Enterobacteriaceae root:Engineered:Food production:Fermented beverages 5.0 +family Enterobacteriaceae root:Host-associated:Human:Digestive system:Intestine 1.0 +family Enterobacteriaceae root:Engineered:Food production:Fermented beverages 6.0 family Enterobacteriaceae root:Engineered:Wastewater 3.0 family Enterobacteriaceae root:Host-associated:Human:Reproductive system:Vagina 4.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Enterobacteriaceae root:Host-associated:Human:Digestive system:Oral 1.0 -family Enterobacteriaceae root:Engineered:Food production:Dairy products 16.0 +family Enterobacteriaceae root:Engineered:Food production:Dairy products 17.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 family Enterobacteriaceae root:Host-associated:Plants:Phylloplane 7.0 family Enterobacteriaceae root:Host-associated:Plants:Rhizosphere 5.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil 27.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Sediment 7.0 -family Enterobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 7.0 +family Enterobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +family Enterobacteriaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic 3.0 family Enterobacteriaceae root:Environmental:Aquatic 1.0 +family Enterobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +family Enterobacteriaceae root:Engineered:Lab enrichment 5.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Wetlands 4.0 family Enterobacteriaceae root:Engineered:Lab Synthesis 1.0 family Enterobacteriaceae root:Host-associated:Birds:Digestive system:Ceca 3.0 +family Enterobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Enterobacteriaceae root:Host-associated:Human:Digestive system 13.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater 2.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Coastal 3.0 @@ -19768,8 +20106,7 @@ family Enterobacteriaceae root:Host-associated:Plants:Root 4.0 family Enterobacteriaceae root:Engineered:Food production 12.0 family Enterobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Enterobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 -family Enterobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 6.0 +family Enterobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 7.0 family Enterobacteriaceae root:Engineered:Food production:Fermented seafood 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 2.0 family Enterobacteriaceae root:Host-associated:Human:Skin:Naris 1.0 @@ -19778,27 +20115,28 @@ family Enterobacteriaceae root:Host-associated:Animal:Digestive system 1.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family Enterobacteriaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Enterobacteriaceae root:Engineered:Modeled 2.0 -family Enterobacteriaceae root:Host-associated:Insecta:Digestive system 6.0 +family Enterobacteriaceae root:Host-associated:Insecta:Digestive system 7.0 family Enterobacteriaceae root:Host-associated 4.0 +family Enterobacteriaceae root:Host-associated:Fish:Digestive system 1.0 family Enterobacteriaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Sand 2.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 family Enterobacteriaceae root:Environmental:Terrestrial:Soil:Clay 2.0 family Enterobacteriaceae root:Host-associated:Human:Reproductive system:Female 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +family Enterobacteriaceae root:Engineered:Wastewater:Water and sludge 1.0 +family Enterobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 family Enterobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 family Enterobacteriaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 family Enterobacteriaceae root:Environmental:Terrestrial 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Enterobacteriaceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 family Enterobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -family Enterobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 family Enterobacteriaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Enterobacteriaceae root:Host-associated:Insecta 7.0 family Enterobacteriaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -family Enterobacteriaceae root:Engineered:Built environment 5.0 +family Enterobacteriaceae root:Engineered:Built environment 6.0 family Enterobacteriaceae root:Host-associated:Birds:Digestive system 4.0 -family Enterobacteriaceae root:Engineered:Lab enrichment 5.0 family Enterobacteriaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Enterobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Enterobacteriaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 @@ -19844,20 +20182,20 @@ family Rubrobacteraceae root:Engineered:Bioreactor 9.0 family Rubrobacteraceae root:Mixed 2.0 family Rubrobacteraceae root:Engineered:Food production:Dairy products 1.0 family Rubrobacteraceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 -family Rubrobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 +family Rubrobacteraceae root:Host-associated:Plants:Rhizosphere 3.0 family Rubrobacteraceae root:Environmental:Terrestrial:Soil 14.0 family Rubrobacteraceae root:Environmental:Aquatic:Sediment 1.0 family Rubrobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 -family Rubrobacteraceae root:Environmental:Terrestrial:Soil:Desert 7.0 family Rubrobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Rubrobacteraceae root:Environmental:Terrestrial:Soil:Desert 7.0 family Rubrobacteraceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family Rubrobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Rubrobacteraceae root:Environmental 1.0 family Halomonadaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Halomonadaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Halomonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Halomonadaceae root:Environmental:Aquatic:Marine 76.0 -family Halomonadaceae root:Environmental:Aquatic:Marine:Oceanic 13.0 +family Halomonadaceae root:Environmental:Aquatic:Marine 88.0 +family Halomonadaceae root:Environmental:Aquatic:Marine:Oceanic 14.0 family Halomonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 family Halomonadaceae root:Host-associated:Plants 3.0 @@ -19876,6 +20214,7 @@ family Halomonadaceae root:Environmental:Aquatic:Marine:Sediment 10.0 family Halomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 family Halomonadaceae root:Environmental:Aquatic:Sediment 3.0 family Halomonadaceae root:Host-associated:Porifera 2.0 +family Halomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Coastal 6.0 family Halomonadaceae root:Environmental:Terrestrial:Soil:Desert 3.0 @@ -19885,7 +20224,6 @@ family Halomonadaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 family Halomonadaceae root:Engineered:Food production 1.0 family Halomonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 family Halomonadaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Halomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Halomonadaceae root:Engineered:Food production:Fermented seafood 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 family Halomonadaceae root:Environmental:Aquatic:Estuary 1.0 @@ -19896,6 +20234,7 @@ family Halomonadaceae root:Host-associated 1.0 family Halomonadaceae root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 family Halomonadaceae root:Host-associated:Mollusca 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Brackish 1.0 +family Halomonadaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Halomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 4.0 @@ -19970,7 +20309,7 @@ family Cenarchaeaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1. family Propionibacteriaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Propionibacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Propionibacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 -family Propionibacteriaceae root:Environmental:Aquatic:Marine 2.0 +family Propionibacteriaceae root:Environmental:Aquatic:Marine 3.0 family Propionibacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 family Propionibacteriaceae root:Environmental:Aquatic:Marine:Oceanic 4.0 family Propionibacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -20007,7 +20346,7 @@ family Propionibacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut family Propionibacteriaceae root:Engineered:Food production 2.0 family Propionibacteriaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 family Propionibacteriaceae root:Engineered:Wastewater:Industrial wastewater 1.0 -family Propionibacteriaceae root:Host-associated:Insecta:Digestive system 1.0 +family Propionibacteriaceae root:Host-associated:Insecta:Digestive system 2.0 family Propionibacteriaceae root:Host-associated 2.0 family Propionibacteriaceae root:Host-associated:Mollusca 1.0 family Propionibacteriaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -20038,7 +20377,7 @@ family Xanthomonadaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Xanthomonadaceae root:Engineered:Food production:Silage fermentation 1.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Agricultural 20.0 family Xanthomonadaceae root:Engineered:Bioreactor 23.0 -family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 4.0 +family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 5.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 family Xanthomonadaceae root:Engineered:Wastewater:Activated Sludge 22.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Permafrost 3.0 @@ -20052,16 +20391,18 @@ family Xanthomonadaceae root:Host-associated:Plants:Phylloplane 4.0 family Xanthomonadaceae root:Host-associated:Plants:Rhizosphere 34.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil 82.0 family Xanthomonadaceae root:Environmental:Aquatic:Marine:Sediment 6.0 -family Xanthomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Xanthomonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Sediment 2.0 family Xanthomonadaceae root:Environmental:Aquatic 4.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 family Xanthomonadaceae root:Host-associated:Porifera 1.0 +family Xanthomonadaceae root:Engineered:Lab enrichment 5.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Xanthomonadaceae root:Engineered:Lab Synthesis 1.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 family Xanthomonadaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +family Xanthomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 17.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater 3.0 family Xanthomonadaceae root:Environmental:Aquatic:Thermal springs 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -20075,7 +20416,6 @@ family Xanthomonadaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Xanthomonadaceae root:Host-associated:Plants:Root 5.0 family Xanthomonadaceae root:Engineered:Food production 5.0 family Xanthomonadaceae root:Environmental:Terrestrial:Deep subsurface 1.0 -family Xanthomonadaceae root:Host-associated:Plants:Rhizosphere:Soil 17.0 family Xanthomonadaceae root:Environmental:Aquatic:Estuary 2.0 family Xanthomonadaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 5.0 @@ -20086,7 +20426,7 @@ family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 3.0 family Xanthomonadaceae root:Engineered:Bioreactor:Continuous culture 4.0 family Xanthomonadaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Xanthomonadaceae root:Engineered:Solid waste 1.0 -family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 family Xanthomonadaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 family Xanthomonadaceae root:Engineered:Wastewater:Water and sludge 8.0 @@ -20097,7 +20437,6 @@ family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Xanthomonadaceae root:Host-associated:Insecta 2.0 family Xanthomonadaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Xanthomonadaceae root:Engineered:Built environment 1.0 -family Xanthomonadaceae root:Engineered:Lab enrichment 5.0 family Xanthomonadaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -20110,7 +20449,7 @@ family Xanthomonadaceae root:Engineered 2.0 family Xanthomonadaceae root:Host-associated:Plants:Rhizome 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 family Xanthomonadaceae root:Environmental:Air 1.0 -family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Xanthomonadaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Xanthomonadaceae root:Engineered:Bioremediation 1.0 family Xanthomonadaceae root:Host-associated:Human:Respiratory system 1.0 family Xanthomonadaceae root:Engineered:Biotransformation 1.0 @@ -20120,10 +20459,10 @@ family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Mine drainage 1.0 family Xanthomonadaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 family Xanthomonadaceae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 family Xanthomonadaceae root:Environmental:Aquatic:Marine:Wetlands 1.0 +family Xanthomonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Xanthomonadaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 family Xanthomonadaceae root:Engineered:Solid waste:Composting:Grass 1.0 family Xanthomonadaceae root:Host-associated:Algae:Brown Algae 1.0 -family Xanthomonadaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Xanthomonadaceae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 genus T78 root:Environmental:Aquatic:Freshwater:Lake 1.0 genus T78 root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 @@ -20158,10 +20497,10 @@ genus Methanosaeta root:Environmental:Aquatic 1.0 genus Methanosaeta root:Engineered:Biogas plant:Wet fermentation 1.0 genus Methanosaeta root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Methanosaeta root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Methanosaeta root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Methanosaeta root:Environmental:Aquatic:Freshwater 1.0 genus Methanosaeta root:Environmental:Aquatic:Marine:Coastal 1.0 genus Methanosaeta root:Engineered:Lab enrichment:Defined media 1.0 -genus Methanosaeta root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Methanosaeta root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Methanosaeta root:Engineered:Wastewater:Industrial wastewater 1.0 genus Methanosaeta root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -20182,7 +20521,7 @@ genus Rubrobacter root:Environmental:Terrestrial:Soil:Permafrost 3.0 genus Rubrobacter root:Mixed 3.0 genus Rubrobacter root:Engineered:Food production:Dairy products 1.0 genus Rubrobacter root:Environmental:Terrestrial:Soil:Contaminated 3.0 -genus Rubrobacter root:Host-associated:Plants:Rhizosphere 10.0 +genus Rubrobacter root:Host-associated:Plants:Rhizosphere 12.0 genus Rubrobacter root:Environmental:Terrestrial:Soil 64.0 genus Rubrobacter root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Rubrobacter root:Environmental:Aquatic:Sediment 1.0 @@ -20190,12 +20529,12 @@ genus Rubrobacter root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Rubrobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Rubrobacter root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Rubrobacter root:Environmental:Terrestrial:Soil:Grasslands 7.0 +genus Rubrobacter root:Host-associated:Plants:Rhizosphere:Soil 9.0 genus Rubrobacter root:Environmental:Aquatic:Freshwater 1.0 genus Rubrobacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Rubrobacter root:Environmental:Terrestrial:Soil:Desert 7.0 genus Rubrobacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Rubrobacter root:Host-associated:Plants:Root 1.0 -genus Rubrobacter root:Host-associated:Plants:Rhizosphere:Soil 9.0 genus Rubrobacter root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 genus Rubrobacter root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Rubrobacter root:Host-associated 1.0 @@ -20217,11 +20556,11 @@ genus KD1-23 root:Engineered:Wastewater:Industrial wastewater 1.0 genus KD1-23 root:Host-associated:Insecta 1.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Sediment 5.0 -genus Bacillus root:Host-associated:Mammals:Digestive system:Fecal 1.0 +genus Bacillus root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Bacillus root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 genus Bacillus root:Environmental:Aquatic:Marine 8.0 genus Bacillus root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -genus Bacillus root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Bacillus root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Bacillus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 genus Bacillus root:Environmental:Terrestrial:Geologic 1.0 genus Bacillus root:Host-associated:Human 2.0 @@ -20240,17 +20579,20 @@ genus Bacillus root:Engineered:Wastewater 1.0 genus Bacillus root:Host-associated:Human:Digestive system:Oral 2.0 genus Bacillus root:Engineered:Food production:Dairy products 9.0 genus Bacillus root:Environmental:Terrestrial:Soil:Contaminated 6.0 -genus Bacillus root:Host-associated:Plants:Rhizosphere 33.0 +genus Bacillus root:Host-associated:Plants:Rhizosphere 35.0 genus Bacillus root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 genus Bacillus root:Environmental:Terrestrial:Soil 53.0 genus Bacillus root:Environmental:Aquatic:Marine:Sediment 19.0 genus Bacillus root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 genus Bacillus root:Environmental:Aquatic:Sediment 3.0 genus Bacillus root:Environmental:Aquatic 1.0 +genus Bacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Bacillus root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Bacillus root:Host-associated:Porifera 1.0 +genus Bacillus root:Engineered:Lab enrichment 1.0 genus Bacillus root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Bacillus root:Environmental:Terrestrial:Soil:Grasslands 3.0 +genus Bacillus root:Host-associated:Plants:Rhizosphere:Soil 9.0 genus Bacillus root:Host-associated:Human:Digestive system 1.0 genus Bacillus root:Environmental:Aquatic:Thermal springs 1.0 genus Bacillus root:Engineered:Solid waste:Composting 3.0 @@ -20263,7 +20605,6 @@ genus Bacillus root:Engineered:Lab enrichment:Defined media 3.0 genus Bacillus root:Host-associated:Plants:Root 2.0 genus Bacillus root:Engineered:Food production 2.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -genus Bacillus root:Host-associated:Plants:Rhizosphere:Soil 7.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Bacillus root:Host-associated:Human:Skin:Naris 1.0 genus Bacillus root:Engineered:Modeled:Simulated communities (sequence read mixture) 4.0 @@ -20283,20 +20624,19 @@ genus Bacillus root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Bacillus root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Bacillus root:Engineered:Wastewater:Water and sludge 1.0 +genus Bacillus root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Bacillus root:Engineered:Lab Synthesis:Genetic cross 1.0 genus Bacillus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Bacillus root:Host-associated:Birds:Digestive system:Digestive tube 1.0 -genus Bacillus root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Bacillus root:Host-associated:Fish:Digestive system:Intestine 1.0 -genus Bacillus root:Engineered:Built environment 4.0 -genus Bacillus root:Engineered:Lab enrichment 1.0 +genus Bacillus root:Engineered:Built environment 5.0 genus Bacillus root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 genus Bacillus root:Engineered:Food production:Fermented vegetables 4.0 genus Bacillus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 3.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Bacillus root:Host-associated:Birds 1.0 genus Bacillus root:Host-associated:Animal 1.0 -genus Bacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus Bacillus root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Bacillus root:Environmental:Aquatic:Freshwater:Storm water 1.0 genus Bacillus root:Engineered:Biotransformation 1.0 genus Bacillus root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -20359,7 +20699,7 @@ class Chlorobia root:Engineered:Modeled:Simulated communities (microbial mixture class Chlorobia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 class Chlorobia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Chlorobia root:Engineered:Modeled 1.0 -class Chlorobia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Chlorobia root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 class Chlorobia root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 order Haptophyceae root:Environmental:Aquatic:Freshwater:Lake 2.0 order Haptophyceae root:Environmental:Aquatic:Marine 5.0 @@ -20390,7 +20730,7 @@ family Saprospiraceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 family Saprospiraceae root:Environmental:Aquatic:Marine 28.0 family Saprospiraceae root:Host-associated:Fish 1.0 family Saprospiraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Saprospiraceae root:Environmental:Aquatic:Marine:Oceanic 7.0 +family Saprospiraceae root:Environmental:Aquatic:Marine:Oceanic 8.0 family Saprospiraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Saprospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 family Saprospiraceae root:Host-associated:Plants 3.0 @@ -20402,6 +20742,7 @@ family Saprospiraceae root:Engineered:Wastewater:Activated Sludge 15.0 family Saprospiraceae root:Mixed 2.0 family Saprospiraceae root:Engineered:Wastewater 3.0 family Saprospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +family Saprospiraceae root:Host-associated:Plants:Rhizosphere 1.0 family Saprospiraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Saprospiraceae root:Environmental:Terrestrial:Soil 6.0 family Saprospiraceae root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -20443,19 +20784,19 @@ family Saprospiraceae root:Engineered:Wastewater:Nutrient removal:Dissolved orga family Saprospiraceae root:Host-associated:Cnidaria 1.0 family Saprospiraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 family Saprospiraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 +family Saprospiraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Saprospiraceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 family Saprospiraceae root:Host-associated:Algae:Brown Algae 1.0 -family Saprospiraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 2.0 family Cyclobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Cyclobacteriaceae root:Environmental:Aquatic:Marine 12.0 +family Cyclobacteriaceae root:Environmental:Aquatic:Marine 14.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 9.0 family Cyclobacteriaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Cyclobacteriaceae root:Mixed 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 15.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Sediment 17.0 +family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Sediment 18.0 family Cyclobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Sediment 3.0 family Cyclobacteriaceae root:Host-associated:Porifera 2.0 @@ -20470,9 +20811,9 @@ family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Pelagic 2.0 +family Cyclobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -family Cyclobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Cyclobacteriaceae root:Engineered:Built environment 1.0 family Cyclobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -20481,7 +20822,7 @@ family Cyclobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkali family Cyclobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Cryomorphaceae root:Environmental:Aquatic:Freshwater:Lake 8.0 family Cryomorphaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Cryomorphaceae root:Environmental:Aquatic:Marine 89.0 +family Cryomorphaceae root:Environmental:Aquatic:Marine 90.0 family Cryomorphaceae root:Environmental:Aquatic:Marine:Oceanic 24.0 family Cryomorphaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 family Cryomorphaceae root:Host-associated:Plants 3.0 @@ -20492,7 +20833,7 @@ family Cryomorphaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Cryomorphaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 family Cryomorphaceae root:Mixed 2.0 family Cryomorphaceae root:Engineered:Wastewater 1.0 -family Cryomorphaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 44.0 +family Cryomorphaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 46.0 family Cryomorphaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Cryomorphaceae root:Environmental:Terrestrial:Soil 2.0 family Cryomorphaceae root:Environmental:Aquatic:Marine:Sediment 5.0 @@ -20523,8 +20864,8 @@ family Cryomorphaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Cryomorphaceae root:Environmental:Aquatic:Marine:Pelagic 9.0 family Cryomorphaceae root:Engineered:Wastewater:Water and sludge 1.0 family Cryomorphaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -family Cryomorphaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Cryomorphaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +family Cryomorphaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Cryomorphaceae root:Engineered:Built environment 1.0 family Cryomorphaceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Cryomorphaceae root:Environmental:Aquatic:Aquaculture 1.0 @@ -20564,12 +20905,12 @@ genus Rubricoccus root:Environmental:Terrestrial:Soil:Forest soil 3.0 genus Rubricoccus root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Rubricoccus root:Host-associated:Plants:Rhizosphere 1.0 genus Rubricoccus root:Environmental:Terrestrial:Soil 8.0 +genus Rubricoccus root:Engineered:Lab enrichment 1.0 +genus Rubricoccus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Rubricoccus root:Engineered:Solid waste:Composting 3.0 genus Rubricoccus root:Environmental:Terrestrial:Soil:Desert 1.0 -genus Rubricoccus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Rubricoccus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Rubricoccus root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -genus Rubricoccus root:Engineered:Lab enrichment 1.0 species Codium arabicum root:Environmental:Aquatic:Freshwater:Lake 1.0 species Blvii28 rotundus root:Environmental:Aquatic:Freshwater:Lake 1.0 species Pigmentiphaga gyiorum root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -20593,11 +20934,11 @@ species Flavobacterium ochracea root:Environmental:Terrestrial:Soil:Loam:Forest species Chryseobacterium genikus root:Environmental:Aquatic:Freshwater:Lake 1.0 order Calanoida root:Environmental:Aquatic:Freshwater:Lake 1.0 order Calanoida root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Calanoida root:Environmental:Aquatic:Marine 52.0 +order Calanoida root:Environmental:Aquatic:Marine 53.0 order Calanoida root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Calanoida root:Environmental:Aquatic:Marine:Oceanic 19.0 order Calanoida root:Environmental:Aquatic:Estuary:Sediment 3.0 -order Calanoida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 +order Calanoida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 order Calanoida root:Environmental:Aquatic:Marine:Sediment 6.0 order Calanoida root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Calanoida root:Environmental:Aquatic:Sediment 1.0 @@ -20617,18 +20958,19 @@ phylum Ascomycota root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system:Fecal 1.0 phylum Ascomycota root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Ascomycota root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Ascomycota root:Host-associated:Human:Digestive system:Large intestine:Fecal 37.0 -phylum Ascomycota root:Environmental:Aquatic:Marine 46.0 +phylum Ascomycota root:Host-associated:Human:Digestive system:Large intestine:Fecal 43.0 +phylum Ascomycota root:Environmental:Aquatic:Marine 50.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -phylum Ascomycota root:Environmental:Aquatic:Marine:Oceanic 8.0 +phylum Ascomycota root:Environmental:Aquatic:Marine:Oceanic 9.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system 2.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Forest soil 5.0 phylum Ascomycota root:Host-associated:Human 2.0 -phylum Ascomycota root:Host-associated:Plants 42.0 +phylum Ascomycota root:Host-associated:Plants 43.0 phylum Ascomycota root:Environmental:Aquatic:Estuary:Sediment 2.0 phylum Ascomycota root:Host-associated:Human:Digestive system:Large intestine 4.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Agricultural 1.0 phylum Ascomycota root:Engineered:Bioreactor 14.0 +phylum Ascomycota root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Ascomycota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Ascomycota root:Engineered:Wastewater:Activated Sludge 3.0 phylum Ascomycota root:Host-associated:Human:Skin 11.0 @@ -20636,38 +20978,40 @@ phylum Ascomycota root:Mixed 3.0 phylum Ascomycota root:Host-associated:Mammals 6.0 phylum Ascomycota root:Engineered:Food production:Fermented beverages 8.0 phylum Ascomycota root:Engineered:Wastewater 5.0 -phylum Ascomycota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +phylum Ascomycota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 phylum Ascomycota root:Host-associated:Human:Digestive system:Oral 2.0 -phylum Ascomycota root:Engineered:Food production:Dairy products 1.0 +phylum Ascomycota root:Engineered:Food production:Dairy products 2.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Contaminated 4.0 phylum Ascomycota root:Host-associated:Plants:Phylloplane 5.0 phylum Ascomycota root:Host-associated:Plants:Rhizosphere 28.0 -phylum Ascomycota root:Environmental:Terrestrial:Soil 17.0 +phylum Ascomycota root:Environmental:Terrestrial:Soil 20.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Sediment 11.0 -phylum Ascomycota root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +phylum Ascomycota root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 phylum Ascomycota root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Ascomycota root:Environmental:Aquatic:Sediment 3.0 +phylum Ascomycota root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Ascomycota root:Engineered:Biogas plant:Wet fermentation 3.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +phylum Ascomycota root:Engineered:Lab enrichment 1.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Grasslands 2.0 phylum Ascomycota root:Host-associated:Birds:Digestive system:Ceca 1.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Ascomycota root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum Ascomycota root:Host-associated:Human:Digestive system 10.0 phylum Ascomycota root:Environmental:Aquatic:Freshwater 2.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Coastal 6.0 phylum Ascomycota root:Engineered:Solid waste:Composting 4.0 -phylum Ascomycota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +phylum Ascomycota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 phylum Ascomycota root:Host-associated:Algae:Red algae 2.0 phylum Ascomycota root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Ascomycota root:Engineered:Lab enrichment:Defined media 1.0 -phylum Ascomycota root:Host-associated:Plants:Root 4.0 +phylum Ascomycota root:Host-associated:Plants:Root 5.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 phylum Ascomycota root:Engineered:Food production 5.0 phylum Ascomycota root:Environmental:Terrestrial:Deep subsurface 3.0 phylum Ascomycota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Ascomycota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Ascomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system:Large intestine 1.0 phylum Ascomycota root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 phylum Ascomycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -20677,12 +21021,12 @@ phylum Ascomycota root:Environmental:Aquatic:Marine:Brackish 2.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Clay 1.0 phylum Ascomycota root:Engineered:Bioreactor:Continuous culture 1.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +phylum Ascomycota root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 phylum Ascomycota root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Ascomycota root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Ascomycota root:Engineered:Lab Synthesis:Genetic cross 1.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -phylum Ascomycota root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 phylum Ascomycota root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Ascomycota root:Host-associated:Insecta 2.0 phylum Ascomycota root:Host-associated:Plants:Phylloplane:Endophytes 1.0 @@ -20695,11 +21039,12 @@ phylum Ascomycota root:Engineered:Biogas plant 2.0 phylum Ascomycota root:Engineered:Food production:Fermented vegetables 2.0 phylum Ascomycota root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 phylum Ascomycota root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -phylum Ascomycota root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Ascomycota root:Environmental:Air 1.0 +phylum Ascomycota root:Host-associated:Fungi 1.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 phylum Ascomycota root:Engineered:Bioremediation:Hydrocarbon 1.0 phylum Ascomycota root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +phylum Ascomycota root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 phylum Ascomycota root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 phylum Ascomycota root:Host-associated:Human:Circulatory system 3.0 phylum Ascomycota root:Environmental:Terrestrial:Soil:Loam 1.0 @@ -20714,19 +21059,20 @@ family Cryptomonadaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Microcystaceae root:Environmental:Aquatic:Freshwater:Lake 2.0 family Microcystaceae root:Environmental:Aquatic:Marine 1.0 family Microcystaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 -family Microcystaceae root:Environmental:Aquatic:Freshwater 1.0 +family Microcystaceae root:Environmental:Aquatic:Freshwater 2.0 family Microcystaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 genus Microcystis root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Microcystis root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Microcystis root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Microcystis root:Environmental:Terrestrial:Soil 1.0 -genus Microcystis root:Environmental:Aquatic:Freshwater 2.0 +genus Microcystis root:Environmental:Aquatic:Freshwater 3.0 genus Microcystis root:Environmental:Aquatic:Marine:Coastal 2.0 genus Microcystis root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 genus Cyanobium root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Cyanobium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Cyanobium root:Environmental:Aquatic:Marine:Coastal 1.0 genus Cobetia root:Environmental:Aquatic:Freshwater:Lake 1.0 +genus Cobetia root:Environmental:Aquatic:Marine 1.0 genus Cobetia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Cobetia root:Host-associated:Algae:Red algae 1.0 genus Cobetia root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 @@ -20736,13 +21082,13 @@ genus Roseiflexus root:Host-associated:Plants 1.0 genus Roseiflexus root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Roseiflexus root:Host-associated:Plants:Rhizosphere 1.0 genus Roseiflexus root:Environmental:Terrestrial:Soil 7.0 +genus Roseiflexus root:Engineered:Lab enrichment 1.0 genus Roseiflexus root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Roseiflexus root:Engineered:Solid waste:Composting 1.0 genus Roseiflexus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Roseiflexus root:Engineered:Solid waste:Composting 1.0 genus Roseiflexus root:Environmental:Terrestrial:Soil:Mine 1.0 genus Roseiflexus root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Roseiflexus root:Engineered:Wastewater:Water and sludge 2.0 -genus Roseiflexus root:Engineered:Lab enrichment 1.0 genus Roseiflexus root:Environmental:Aquatic:Lentic 1.0 genus Roseiflexus root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Lake 2.0 @@ -20750,10 +21096,10 @@ genus Acinetobacter root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Sediment 6.0 genus Acinetobacter root:Host-associated:Mammals:Digestive system:Fecal 5.0 genus Acinetobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -genus Acinetobacter root:Environmental:Aquatic:Marine 25.0 +genus Acinetobacter root:Environmental:Aquatic:Marine 26.0 genus Acinetobacter root:Host-associated:Fish 2.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -genus Acinetobacter root:Environmental:Aquatic:Marine:Oceanic 5.0 +genus Acinetobacter root:Environmental:Aquatic:Marine:Oceanic 6.0 genus Acinetobacter root:Host-associated:Mammals:Digestive system 3.0 genus Acinetobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 genus Acinetobacter root:Environmental:Terrestrial:Geologic 2.0 @@ -20768,10 +21114,10 @@ genus Acinetobacter root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1. genus Acinetobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Acinetobacter root:Engineered:Wastewater:Activated Sludge 8.0 genus Acinetobacter root:Host-associated:Human:Skin 16.0 -genus Acinetobacter root:Mixed 12.0 +genus Acinetobacter root:Mixed 13.0 genus Acinetobacter root:Host-associated:Mammals 6.0 genus Acinetobacter root:Host-associated:Amphibia 4.0 -genus Acinetobacter root:Engineered:Food production:Fermented beverages 2.0 +genus Acinetobacter root:Engineered:Food production:Fermented beverages 3.0 genus Acinetobacter root:Engineered:Wastewater 8.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Acinetobacter root:Host-associated:Human:Digestive system:Oral 1.0 @@ -20781,12 +21127,14 @@ genus Acinetobacter root:Host-associated:Plants:Phylloplane 4.0 genus Acinetobacter root:Host-associated:Plants:Rhizosphere 2.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 genus Acinetobacter root:Environmental:Terrestrial:Soil 16.0 -genus Acinetobacter root:Environmental:Aquatic:Marine:Sediment 22.0 +genus Acinetobacter root:Environmental:Aquatic:Marine:Sediment 23.0 genus Acinetobacter root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Lotic 3.0 genus Acinetobacter root:Environmental:Aquatic:Sediment 3.0 genus Acinetobacter root:Environmental:Aquatic 3.0 +genus Acinetobacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Acinetobacter root:Host-associated:Porifera 3.0 +genus Acinetobacter root:Engineered:Lab enrichment 3.0 genus Acinetobacter root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Acinetobacter root:Engineered:Lab Synthesis 1.0 genus Acinetobacter root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -20804,6 +21152,7 @@ genus Acinetobacter root:Engineered:Food production 8.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Neritic zone 1.0 genus Acinetobacter root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 +genus Acinetobacter root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Acinetobacter root:Engineered:Modeled:Simulated communities (sequence read mixture) 4.0 genus Acinetobacter root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -20817,19 +21166,18 @@ genus Acinetobacter root:Environmental:Aquatic:Freshwater:Drinking water:Deliver genus Acinetobacter root:Engineered:Solid waste 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Acinetobacter root:Environmental:Aquatic:Thermal springs:Sediment 2.0 -genus Acinetobacter root:Environmental:Aquatic:Freshwater:Groundwater 6.0 +genus Acinetobacter root:Environmental:Aquatic:Freshwater:Groundwater 8.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Acinetobacter root:Environmental:Aquatic:Marine:Pelagic 1.0 -genus Acinetobacter root:Engineered:Wastewater:Water and sludge 5.0 +genus Acinetobacter root:Engineered:Wastewater:Water and sludge 6.0 genus Acinetobacter root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 genus Acinetobacter root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Acinetobacter root:Host-associated:Reptile:Oral cavity 1.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Acinetobacter root:Host-associated:Insecta 2.0 +genus Acinetobacter root:Host-associated:Insecta 3.0 genus Acinetobacter root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -genus Acinetobacter root:Engineered:Built environment 5.0 -genus Acinetobacter root:Engineered:Lab enrichment 3.0 +genus Acinetobacter root:Engineered:Built environment 6.0 genus Acinetobacter root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Acinetobacter root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Acinetobacter root:Engineered:Food production:Fermented vegetables 2.0 @@ -20842,7 +21190,7 @@ genus Acinetobacter root:Environmental 1.0 genus Acinetobacter root:Host-associated:Animal 2.0 genus Acinetobacter root:Engineered 1.0 genus Acinetobacter root:Host-associated:Fish:Skin 1.0 -genus Acinetobacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus Acinetobacter root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Acinetobacter root:Host-associated:Arthropoda 1.0 genus Acinetobacter root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 genus Acinetobacter root:Engineered:Biotransformation 1.0 @@ -20870,8 +21218,8 @@ species Candidatus Nitrosotenuis chungbukensis root:Environmental:Aquatic:Freshw order Campylobacterales root:Environmental:Aquatic:Freshwater:Lake 3.0 order Campylobacterales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Campylobacterales root:Environmental:Aquatic:Freshwater:Sediment 3.0 -order Campylobacterales root:Host-associated:Mammals:Digestive system:Fecal 14.0 -order Campylobacterales root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 +order Campylobacterales root:Host-associated:Mammals:Digestive system:Fecal 15.0 +order Campylobacterales root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 order Campylobacterales root:Host-associated:Birds:Digestive system:Fecal 2.0 order Campylobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 order Campylobacterales root:Environmental:Aquatic:Marine 24.0 @@ -20893,7 +21241,7 @@ order Campylobacterales root:Host-associated:Human:Digestive system:Intestine 1. order Campylobacterales root:Engineered:Food production:Fermented beverages 1.0 order Campylobacterales root:Engineered:Wastewater 9.0 order Campylobacterales root:Host-associated:Human:Reproductive system:Vagina 1.0 -order Campylobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +order Campylobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 order Campylobacterales root:Host-associated:Human:Digestive system:Oral 6.0 order Campylobacterales root:Engineered:Food production:Dairy products 1.0 order Campylobacterales root:Host-associated:Plants:Phylloplane 1.0 @@ -20901,11 +21249,13 @@ order Campylobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 order Campylobacterales root:Environmental:Terrestrial:Soil 7.0 order Campylobacterales root:Environmental:Aquatic:Marine:Sediment 26.0 order Campylobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Campylobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Campylobacterales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Campylobacterales root:Environmental:Aquatic:Sediment 8.0 order Campylobacterales root:Environmental:Aquatic 2.0 order Campylobacterales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 order Campylobacterales root:Host-associated:Porifera 1.0 +order Campylobacterales root:Engineered:Lab enrichment 3.0 order Campylobacterales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 order Campylobacterales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 order Campylobacterales root:Host-associated:Birds:Digestive system:Ceca 3.0 @@ -20931,7 +21281,6 @@ order Campylobacterales root:Engineered:Wastewater:Industrial wastewater 5.0 order Campylobacterales root:Engineered:Modeled 3.0 order Campylobacterales root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 order Campylobacterales root:Host-associated:Mollusca 3.0 -order Campylobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Campylobacterales root:Host-associated:Fish:Digestive system 2.0 order Campylobacterales root:Environmental:Terrestrial:Soil:Sand 1.0 order Campylobacterales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 2.0 @@ -20944,14 +21293,14 @@ order Campylobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Sedime order Campylobacterales root:Environmental:Aquatic:Freshwater:Groundwater 4.0 order Campylobacterales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Campylobacterales root:Environmental:Aquatic:Marine:Pelagic 2.0 -order Campylobacterales root:Engineered:Wastewater:Water and sludge 3.0 +order Campylobacterales root:Engineered:Wastewater:Water and sludge 4.0 +order Campylobacterales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Campylobacterales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 order Campylobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Campylobacterales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 order Campylobacterales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Campylobacterales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Campylobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Campylobacterales root:Engineered:Lab enrichment 3.0 order Campylobacterales root:Host-associated:Arthropoda:Respiratory system:Gills 2.0 order Campylobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Campylobacterales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -20970,9 +21319,10 @@ order Campylobacterales root:Host-associated:Fish:Skin 2.0 order Campylobacterales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 order Campylobacterales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Campylobacterales root:Engineered:Bioremediation 1.0 +order Campylobacterales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Campylobacterales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 order Campylobacterales root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -order Campylobacterales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Campylobacterales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 order Campylobacterales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order Campylobacterales root:Host-associated:Mollusca:Digestive system 1.0 order Campylobacterales root:Host-associated:Cnidaria 1.0 @@ -21014,8 +21364,10 @@ order Syntrophobacterales root:Environmental:Aquatic:Sediment 8.0 order Syntrophobacterales root:Engineered:Biogas plant:Wet fermentation 3.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 order Syntrophobacterales root:Host-associated:Porifera 1.0 +order Syntrophobacterales root:Engineered:Lab enrichment 1.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Wetlands 5.0 order Syntrophobacterales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +order Syntrophobacterales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Syntrophobacterales root:Environmental:Aquatic:Freshwater 2.0 order Syntrophobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Syntrophobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -21027,7 +21379,6 @@ order Syntrophobacterales root:Environmental:Aquatic:Marine:Oil-contaminated sed order Syntrophobacterales root:Environmental:Terrestrial:Deep subsurface 1.0 order Syntrophobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 12.0 -order Syntrophobacterales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Syntrophobacterales root:Engineered:Wastewater:Industrial wastewater 3.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Clay 1.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -21040,12 +21391,11 @@ order Syntrophobacterales root:Engineered:Wastewater:Water and sludge 4.0 order Syntrophobacterales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Syntrophobacterales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Syntrophobacterales root:Engineered:Lab enrichment 1.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order Syntrophobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 -order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +order Syntrophobacterales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Syntrophobacterales root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order Syntrophobacterales root:Engineered:Bioremediation:Hydrocarbon 1.0 order Syntrophobacterales root:Environmental:Terrestrial:Oil reservoir 1.0 @@ -21056,7 +21406,7 @@ family Campylobacteraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Campylobacteraceae root:Environmental:Aquatic:Freshwater:Pond 2.0 family Campylobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Campylobacteraceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 -family Campylobacteraceae root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 +family Campylobacteraceae root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 family Campylobacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 family Campylobacteraceae root:Environmental:Aquatic:Marine 14.0 family Campylobacteraceae root:Host-associated:Fish 1.0 @@ -21072,6 +21422,7 @@ family Campylobacteraceae root:Engineered:Wastewater:Activated Sludge 8.0 family Campylobacteraceae root:Mixed 1.0 family Campylobacteraceae root:Engineered:Food production:Fermented beverages 1.0 family Campylobacteraceae root:Engineered:Wastewater 10.0 +family Campylobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Campylobacteraceae root:Host-associated:Human:Digestive system:Oral 3.0 family Campylobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Campylobacteraceae root:Environmental:Terrestrial:Soil 2.0 @@ -21081,6 +21432,7 @@ family Campylobacteraceae root:Environmental:Aquatic:Sediment 1.0 family Campylobacteraceae root:Environmental:Aquatic 2.0 family Campylobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 family Campylobacteraceae root:Host-associated:Porifera 1.0 +family Campylobacteraceae root:Engineered:Lab enrichment 2.0 family Campylobacteraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 family Campylobacteraceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Campylobacteraceae root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -21110,12 +21462,12 @@ family Campylobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1. family Campylobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Campylobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 family Campylobacteraceae root:Environmental:Aquatic:Marine:Pelagic 2.0 -family Campylobacteraceae root:Engineered:Wastewater:Water and sludge 4.0 +family Campylobacteraceae root:Engineered:Wastewater:Water and sludge 5.0 +family Campylobacteraceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Campylobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 family Campylobacteraceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Campylobacteraceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Campylobacteraceae root:Engineered:Built environment 1.0 -family Campylobacteraceae root:Engineered:Lab enrichment 2.0 family Campylobacteraceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Campylobacteraceae root:Engineered:Solid waste:Landfill 1.0 family Campylobacteraceae root:Host-associated:Algae 1.0 @@ -21123,8 +21475,9 @@ family Campylobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:B family Campylobacteraceae root:Environmental 1.0 family Campylobacteraceae root:Environmental:Aquatic:Aquaculture 2.0 family Campylobacteraceae root:Host-associated:Fish:Skin 1.0 +family Campylobacteraceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Campylobacteraceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -family Campylobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +family Campylobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 2.0 family Campylobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 family Campylobacteraceae root:Host-associated:Mollusca:Digestive system 1.0 family Campylobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 3.0 @@ -21137,7 +21490,7 @@ family Chlorobiaceae root:Engineered:Modeled:Simulated communities (microbial mi family Chlorobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Chlorobiaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Chlorobiaceae root:Engineered:Modeled 1.0 -family Chlorobiaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Chlorobiaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 family Chlorobiaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Sediment 8.0 @@ -21180,7 +21533,7 @@ family Syntrophaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 -family Syntrophaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Syntrophaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Syntrophaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 family Syntrophaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 genus Phaeospirillum root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -21193,6 +21546,7 @@ genus Burkholderia root:Host-associated:Human 1.0 genus Burkholderia root:Host-associated:Plants 4.0 genus Burkholderia root:Engineered:Wastewater:Activated Sludge 1.0 genus Burkholderia root:Environmental:Terrestrial:Soil:Permafrost 1.0 +genus Burkholderia root:Host-associated:Human:Digestive system:Intestine 1.0 genus Burkholderia root:Engineered:Food production:Fermented beverages 1.0 genus Burkholderia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Burkholderia root:Environmental:Terrestrial:Soil:Contaminated 2.0 @@ -21202,6 +21556,7 @@ genus Burkholderia root:Environmental:Aquatic:Marine:Sediment 1.0 genus Burkholderia root:Environmental:Aquatic 1.0 genus Burkholderia root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Burkholderia root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Burkholderia root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Burkholderia root:Host-associated:Human:Digestive system 1.0 genus Burkholderia root:Environmental:Aquatic:Freshwater 1.0 genus Burkholderia root:Environmental:Aquatic:Freshwater:Drinking water 1.0 @@ -21209,7 +21564,6 @@ genus Burkholderia root:Environmental:Terrestrial:Soil:Desert 1.0 genus Burkholderia root:Engineered:Lab enrichment:Defined media 2.0 genus Burkholderia root:Host-associated:Plants:Root 2.0 genus Burkholderia root:Engineered:Food production 1.0 -genus Burkholderia root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Burkholderia root:Engineered:Wastewater:Industrial wastewater 2.0 genus Burkholderia root:Host-associated:Insecta:Digestive system 2.0 genus Burkholderia root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -21264,13 +21618,14 @@ genus Sphingomonas root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Sphingomonas root:Host-associated:Plants:Phylloplane 6.0 genus Sphingomonas root:Host-associated:Plants:Rhizosphere 30.0 genus Sphingomonas root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Sphingomonas root:Environmental:Terrestrial:Soil 29.0 -genus Sphingomonas root:Environmental:Aquatic:Marine:Sediment 8.0 +genus Sphingomonas root:Environmental:Terrestrial:Soil 30.0 +genus Sphingomonas root:Environmental:Aquatic:Marine:Sediment 9.0 genus Sphingomonas root:Environmental:Aquatic:Sediment 1.0 genus Sphingomonas root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Sphingomonas root:Host-associated:Porifera 1.0 genus Sphingomonas root:Environmental:Terrestrial:Soil:Grasslands 4.0 genus Sphingomonas root:Host-associated:Mammals:Digestive system:Stomach 1.0 +genus Sphingomonas root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Sphingomonas root:Environmental:Aquatic:Freshwater 2.0 genus Sphingomonas root:Environmental:Aquatic:Marine:Coastal 4.0 genus Sphingomonas root:Environmental:Aquatic:Freshwater:Drinking water 3.0 @@ -21292,9 +21647,11 @@ genus Sphingomonas root:Host-associated:Human:Reproductive system:Female 1.0 genus Sphingomonas root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Sphingomonas root:Environmental:Aquatic:Freshwater:Groundwater 3.0 genus Sphingomonas root:Engineered:Wastewater:Water and sludge 3.0 +genus Sphingomonas root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Sphingomonas root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Sphingomonas root:Environmental:Terrestrial:Soil:Crop 2.0 genus Sphingomonas root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 +genus Sphingomonas root:Host-associated:Insecta 1.0 genus Sphingomonas root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Sphingomonas root:Engineered:Built environment 3.0 genus Sphingomonas root:Environmental:Terrestrial:Soil:Boreal forest 1.0 @@ -21413,13 +21770,14 @@ class Nitrospira root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Nitrospira root:Host-associated:Porifera 8.0 class Nitrospira root:Environmental:Terrestrial:Soil:Wetlands 4.0 class Nitrospira root:Environmental:Terrestrial:Soil:Grasslands 1.0 +class Nitrospira root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Nitrospira root:Environmental:Aquatic:Freshwater 1.0 class Nitrospira root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 class Nitrospira root:Environmental:Aquatic:Thermal springs 2.0 class Nitrospira root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 +class Nitrospira root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Nitrospira root:Engineered:Food production 1.0 class Nitrospira root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -class Nitrospira root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Nitrospira root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 class Nitrospira root:Environmental:Aquatic:Estuary 1.0 class Nitrospira root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 @@ -21427,7 +21785,7 @@ class Nitrospira root:Environmental:Terrestrial:Soil:Clay 1.0 class Nitrospira root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class Nitrospira root:Engineered:Bioreactor:Continuous culture 3.0 class Nitrospira root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -class Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +class Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater 4.0 class Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 class Nitrospira root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Nitrospira root:Engineered:Built environment 1.0 @@ -21473,12 +21831,12 @@ class Acidobacteria-6 root:Environmental:Terrestrial:Soil:Tropical rainforest 2. class Acidobacteria-6 root:Host-associated:Porifera 1.0 class Acidobacteria-6 root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Acidobacteria-6 root:Environmental:Terrestrial:Soil:Grasslands 10.0 +class Acidobacteria-6 root:Host-associated:Plants:Rhizosphere:Soil 14.0 class Acidobacteria-6 root:Environmental:Aquatic:Freshwater 3.0 class Acidobacteria-6 root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Acidobacteria-6 root:Engineered:Solid waste:Composting 2.0 class Acidobacteria-6 root:Environmental:Terrestrial:Soil:Desert 4.0 class Acidobacteria-6 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Acidobacteria-6 root:Host-associated:Plants:Rhizosphere:Soil 14.0 class Acidobacteria-6 root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 class Acidobacteria-6 root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 class Acidobacteria-6 root:Host-associated:Insecta:Digestive system 1.0 @@ -21522,11 +21880,11 @@ order Nitrospirales root:Environmental:Aquatic 1.0 order Nitrospirales root:Host-associated:Porifera 1.0 order Nitrospirales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Nitrospirales root:Environmental:Terrestrial:Soil:Grasslands 2.0 +order Nitrospirales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Nitrospirales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Nitrospirales root:Environmental:Aquatic:Thermal springs 2.0 order Nitrospirales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Nitrospirales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -order Nitrospirales root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Nitrospirales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Nitrospirales root:Environmental:Terrestrial:Soil:Clay 1.0 order Nitrospirales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -21571,14 +21929,14 @@ order Chlorophyta root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 order SHA-124 root:Environmental:Aquatic:Freshwater:Lake 1.0 order Chroococcales root:Environmental:Aquatic:Freshwater:Lake 6.0 order Chroococcales root:Environmental:Aquatic:Freshwater:Pond 1.0 -order Chroococcales root:Environmental:Aquatic:Marine 2.0 +order Chroococcales root:Environmental:Aquatic:Marine 3.0 order Chroococcales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Chroococcales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Chroococcales root:Host-associated:Plants 1.0 order Chroococcales root:Environmental:Terrestrial:Soil 1.0 order Chroococcales root:Environmental:Aquatic:Marine:Sediment 1.0 order Chroococcales root:Host-associated:Porifera 2.0 -order Chroococcales root:Environmental:Aquatic:Freshwater 1.0 +order Chroococcales root:Environmental:Aquatic:Freshwater 2.0 order Chroococcales root:Environmental:Aquatic:Marine:Coastal 1.0 order Chroococcales root:Environmental:Terrestrial:Soil:Desert 1.0 order Chroococcales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 @@ -21650,17 +22008,18 @@ family Xenococcaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Xenococcaceae root:Environmental:Aquatic 1.0 family Xenococcaceae root:Environmental:Terrestrial:Soil:Desert 2.0 family Xenococcaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Xenococcaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Veillonellaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Veillonellaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Veillonellaceae root:Host-associated:Mammals:Digestive system:Fecal 14.0 -family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 24.0 +family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 25.0 family Veillonellaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 family Veillonellaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -family Veillonellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 135.0 +family Veillonellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 139.0 family Veillonellaceae root:Environmental:Aquatic:Marine 1.0 -family Veillonellaceae root:Host-associated:Mammals:Digestive system 4.0 +family Veillonellaceae root:Host-associated:Mammals:Digestive system 5.0 family Veillonellaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -family Veillonellaceae root:Host-associated:Human 14.0 +family Veillonellaceae root:Host-associated:Human 15.0 family Veillonellaceae root:Host-associated:Plants 1.0 family Veillonellaceae root:Host-associated:Human:Digestive system:Large intestine 8.0 family Veillonellaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -21681,10 +22040,13 @@ family Veillonellaceae root:Host-associated:Plants:Rhizosphere 1.0 family Veillonellaceae root:Environmental:Terrestrial:Soil 4.0 family Veillonellaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Veillonellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Veillonellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +family Veillonellaceae root:Engineered:Lab enrichment 2.0 family Veillonellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 family Veillonellaceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 family Veillonellaceae root:Host-associated:Birds:Digestive system:Ceca 3.0 +family Veillonellaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Veillonellaceae root:Host-associated:Human:Digestive system 21.0 family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 family Veillonellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -21694,7 +22056,6 @@ family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Subgingi family Veillonellaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 family Veillonellaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Veillonellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -family Veillonellaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Veillonellaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 3.0 family Veillonellaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Veillonellaceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -21704,13 +22065,12 @@ family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Supragin family Veillonellaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Veillonellaceae root:Host-associated:Human:Reproductive system:Female 1.0 family Veillonellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Veillonellaceae root:Engineered:Wastewater:Water and sludge 3.0 +family Veillonellaceae root:Engineered:Wastewater:Water and sludge 4.0 family Veillonellaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 family Veillonellaceae root:Environmental:Terrestrial 1.0 family Veillonellaceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 family Veillonellaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Veillonellaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 -family Veillonellaceae root:Engineered:Lab enrichment 2.0 family Veillonellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Veillonellaceae root:Engineered:Food production:Fermented vegetables 1.0 family Veillonellaceae root:Host-associated:Birds 1.0 @@ -21721,6 +22081,7 @@ family Veillonellaceae root:Host-associated:Human:Digestive system:Oral:Throat 1 family Veillonellaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 family Veillonellaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Veillonellaceae root:Host-associated:Human:Respiratory system 4.0 +family Veillonellaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Veillonellaceae root:Engineered:Biotransformation 1.0 family Veillonellaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 family Veillonellaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -21739,10 +22100,10 @@ family Cyanobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkali genus Thermobaculum root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Thermobaculum root:Engineered:Bioreactor 12.0 genus Thermobaculum root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Thermobaculum root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Thermobaculum root:Engineered:Solid waste:Composting 5.0 genus Thermobaculum root:Environmental:Terrestrial:Soil:Desert 4.0 genus Thermobaculum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Thermobaculum root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Thermobaculum root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Paulinella root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Paulinella root:Environmental:Aquatic:Marine 4.0 @@ -21765,10 +22126,10 @@ genus LCP-6 root:Environmental:Terrestrial:Soil 3.0 genus LCP-6 root:Environmental:Aquatic:Marine:Sediment 2.0 genus LCP-6 root:Environmental:Aquatic 1.0 genus LCP-6 root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus LCP-6 root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus LCP-6 root:Environmental:Aquatic:Freshwater 1.0 genus LCP-6 root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus LCP-6 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus LCP-6 root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus LCP-6 root:Engineered:Bioreactor:Continuous culture 1.0 genus LCP-6 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus LCP-6 root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 @@ -21794,8 +22155,8 @@ genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Dehalobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 genus Dehalobacterium root:Environmental:Terrestrial:Soil 1.0 genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 genus Dehalobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Dehalobacterium root:Environmental 1.0 genus Dehalobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 @@ -21839,10 +22200,10 @@ genus Iamia root:Environmental:Aquatic 1.0 genus Iamia root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 genus Iamia root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Iamia root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Iamia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Iamia root:Environmental:Aquatic:Freshwater 1.0 genus Iamia root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Iamia root:Environmental:Terrestrial:Soil:Desert 1.0 -genus Iamia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Iamia root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Iamia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Iamia root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -21876,7 +22237,7 @@ genus Lautropia root:Host-associated:Human:Digestive system:Large intestine:Feca genus Lautropia root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Lautropia root:Engineered:Bioreactor 2.0 genus Lautropia root:Host-associated:Human:Skin 1.0 -genus Lautropia root:Host-associated:Human:Digestive system:Oral 10.0 +genus Lautropia root:Host-associated:Human:Digestive system:Oral 11.0 genus Lautropia root:Environmental:Terrestrial:Soil 5.0 genus Lautropia root:Environmental:Aquatic:Freshwater 4.0 genus Lautropia root:Engineered:Solid waste:Composting 1.0 @@ -21892,26 +22253,27 @@ genus Lautropia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 genus Lautropia root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Lautropia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 genus Lautropia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +genus Lautropia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Lautropia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Lautropia root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 genus Bacteroides root:Environmental:Aquatic:Freshwater:Lake 2.0 -genus Bacteroides root:Host-associated:Mammals:Digestive system:Fecal 44.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system:Fecal 45.0 genus Bacteroides root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Bacteroides root:Host-associated:Birds:Digestive system:Fecal 11.0 -genus Bacteroides root:Host-associated:Human:Digestive system:Large intestine:Fecal 167.0 +genus Bacteroides root:Host-associated:Human:Digestive system:Large intestine:Fecal 176.0 genus Bacteroides root:Environmental:Aquatic:Marine 8.0 -genus Bacteroides root:Host-associated:Mammals:Digestive system 21.0 -genus Bacteroides root:Host-associated:Human 8.0 -genus Bacteroides root:Host-associated:Human:Digestive system:Large intestine 11.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system 22.0 +genus Bacteroides root:Host-associated:Human 9.0 +genus Bacteroides root:Host-associated:Human:Digestive system:Large intestine 12.0 genus Bacteroides root:Engineered:Bioreactor 9.0 genus Bacteroides root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Bacteroides root:Engineered:Wastewater:Activated Sludge 9.0 genus Bacteroides root:Host-associated:Human:Skin 1.0 genus Bacteroides root:Environmental:Terrestrial:Soil:Permafrost 1.0 -genus Bacteroides root:Mixed 4.0 +genus Bacteroides root:Mixed 6.0 genus Bacteroides root:Host-associated:Mammals 6.0 genus Bacteroides root:Host-associated:Amphibia 1.0 -genus Bacteroides root:Host-associated:Human:Digestive system:Intestine 3.0 +genus Bacteroides root:Host-associated:Human:Digestive system:Intestine 4.0 genus Bacteroides root:Engineered:Food production:Fermented beverages 1.0 genus Bacteroides root:Engineered:Wastewater 11.0 genus Bacteroides root:Host-associated:Human:Reproductive system:Vagina 1.0 @@ -21922,23 +22284,26 @@ genus Bacteroides root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Bacteroides root:Environmental:Aquatic:Freshwater:Wetlands 1.0 genus Bacteroides root:Environmental:Terrestrial:Soil 7.0 genus Bacteroides root:Environmental:Aquatic:Marine:Sediment 8.0 -genus Bacteroides root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +genus Bacteroides root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +genus Bacteroides root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Bacteroides root:Environmental:Aquatic:Sediment 2.0 genus Bacteroides root:Environmental:Aquatic 1.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system:Midgut 5.0 +genus Bacteroides root:Engineered:Lab enrichment 2.0 genus Bacteroides root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 genus Bacteroides root:Host-associated:Birds:Digestive system:Ceca 6.0 +genus Bacteroides root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Bacteroides root:Host-associated:Human:Digestive system 34.0 genus Bacteroides root:Environmental:Aquatic:Freshwater 1.0 genus Bacteroides root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Bacteroides root:Environmental:Aquatic:Marine:Coastal 2.0 genus Bacteroides root:Engineered:Solid waste:Composting 4.0 genus Bacteroides root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -genus Bacteroides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 32.0 -genus Bacteroides root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 33.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 genus Bacteroides root:Engineered:Lab enrichment:Defined media 1.0 genus Bacteroides root:Engineered:Food production 1.0 genus Bacteroides root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 -genus Bacteroides root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Bacteroides root:Host-associated:Mammals:Digestive system:Large intestine 10.0 genus Bacteroides root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Bacteroides root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 @@ -21947,7 +22312,6 @@ genus Bacteroides root:Engineered:Wastewater:Industrial wastewater 3.0 genus Bacteroides root:Engineered:Modeled 1.0 genus Bacteroides root:Host-associated:Insecta:Digestive system 1.0 genus Bacteroides root:Host-associated 1.0 -genus Bacteroides root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Bacteroides root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 genus Bacteroides root:Environmental:Terrestrial:Soil:Sand 1.0 genus Bacteroides root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -21955,7 +22319,7 @@ genus Bacteroides root:Engineered:Bioreactor:Continuous culture 1.0 genus Bacteroides root:Host-associated:Human:Reproductive system:Female 1.0 genus Bacteroides root:Engineered:Solid waste 1.0 genus Bacteroides root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Bacteroides root:Engineered:Wastewater:Water and sludge 5.0 +genus Bacteroides root:Engineered:Wastewater:Water and sludge 7.0 genus Bacteroides root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 genus Bacteroides root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Bacteroides root:Environmental:Terrestrial 1.0 @@ -21964,7 +22328,6 @@ genus Bacteroides root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 genus Bacteroides root:Host-associated:Insecta 1.0 genus Bacteroides root:Engineered:Built environment 1.0 genus Bacteroides root:Host-associated:Birds:Digestive system 2.0 -genus Bacteroides root:Engineered:Lab enrichment 2.0 genus Bacteroides root:Host-associated:Animal:Digestive system:Fecal 5.0 genus Bacteroides root:Engineered:Biogas plant 1.0 genus Bacteroides root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -21972,16 +22335,17 @@ genus Bacteroides root:Host-associated:Reptile 1.0 genus Bacteroides root:Host-associated:Mammals:Respiratory system 5.0 genus Bacteroides root:Host-associated:Birds 5.0 genus Bacteroides root:Engineered 3.0 -genus Bacteroides root:Host-associated:Mammals:Digestive system:Midgut 3.0 genus Bacteroides root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 genus Bacteroides root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Bacteroides root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 genus Bacteroides root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +genus Bacteroides root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Bacteroides root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Bacteroides root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Bacteroides root:Host-associated:Human:Circulatory system:Blood 1.0 genus Bacteroides root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 genus Bacteroides root:Host-associated:Mammals:Nervous system:Brain 1.0 +genus Bacteroides root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 species Rhodospirillum rubrum root:Environmental:Aquatic:Freshwater:Lake 1.0 species Tenacibaculum halotolerans root:Environmental:Aquatic:Freshwater:Lake 1.0 species Chloroherpeton calciphila root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -22032,7 +22396,7 @@ order Methanomicrobiales root:Environmental:Aquatic:Freshwater:Sediment 3.0 order Methanomicrobiales root:Host-associated:Mammals:Digestive system:Fecal 6.0 order Methanomicrobiales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 order Methanomicrobiales root:Environmental:Aquatic:Marine 4.0 -order Methanomicrobiales root:Host-associated:Mammals:Digestive system 3.0 +order Methanomicrobiales root:Host-associated:Mammals:Digestive system 4.0 order Methanomicrobiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Methanomicrobiales root:Environmental:Terrestrial:Geologic 1.0 order Methanomicrobiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -22043,7 +22407,7 @@ order Methanomicrobiales root:Engineered:Bioreactor 23.0 order Methanomicrobiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 order Methanomicrobiales root:Engineered:Wastewater:Activated Sludge 27.0 order Methanomicrobiales root:Environmental:Terrestrial:Soil:Permafrost 2.0 -order Methanomicrobiales root:Mixed 2.0 +order Methanomicrobiales root:Mixed 3.0 order Methanomicrobiales root:Host-associated:Mammals 2.0 order Methanomicrobiales root:Engineered:Food production:Fermented beverages 4.0 order Methanomicrobiales root:Engineered:Wastewater 4.0 @@ -22062,6 +22426,7 @@ order Methanomicrobiales root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Methanomicrobiales root:Engineered:Solid waste:Composting 1.0 order Methanomicrobiales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 order Methanomicrobiales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +order Methanomicrobiales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Methanomicrobiales root:Engineered:Lab enrichment:Defined media 1.0 order Methanomicrobiales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Methanomicrobiales root:Environmental:Terrestrial:Deep subsurface 1.0 @@ -22092,7 +22457,7 @@ order Methanomicrobiales root:Engineered:Biotransformation 1.0 order Methanomicrobiales root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 order Methanomicrobiales root:Engineered:Solid waste:Solid animal waste 1.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lake 4.0 -order Xanthomonadales root:Environmental:Aquatic:Freshwater:Sediment 7.0 +order Xanthomonadales root:Environmental:Aquatic:Freshwater:Sediment 9.0 order Xanthomonadales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 order Xanthomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 order Xanthomonadales root:Environmental:Aquatic:Marine 5.0 @@ -22112,7 +22477,7 @@ order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 order Xanthomonadales root:Engineered:Wastewater:Activated Sludge 29.0 order Xanthomonadales root:Host-associated:Human:Skin 1.0 order Xanthomonadales root:Environmental:Terrestrial:Soil:Permafrost 4.0 -order Xanthomonadales root:Mixed 2.0 +order Xanthomonadales root:Mixed 3.0 order Xanthomonadales root:Host-associated:Mammals 3.0 order Xanthomonadales root:Host-associated:Amphibia 1.0 order Xanthomonadales root:Engineered:Food production:Fermented beverages 2.0 @@ -22126,16 +22491,18 @@ order Xanthomonadales root:Host-associated:Plants:Rhizosphere 42.0 order Xanthomonadales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Xanthomonadales root:Environmental:Terrestrial:Soil 115.0 order Xanthomonadales root:Environmental:Aquatic:Marine:Sediment 9.0 -order Xanthomonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +order Xanthomonadales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Xanthomonadales root:Environmental:Aquatic:Sediment 3.0 order Xanthomonadales root:Environmental:Aquatic 4.0 order Xanthomonadales root:Environmental:Terrestrial:Soil:Tropical rainforest 5.0 order Xanthomonadales root:Host-associated:Porifera 1.0 +order Xanthomonadales root:Engineered:Lab enrichment 5.0 order Xanthomonadales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Xanthomonadales root:Engineered:Lab Synthesis 1.0 order Xanthomonadales root:Environmental:Terrestrial:Soil:Grasslands 8.0 order Xanthomonadales root:Host-associated:Mammals:Digestive system:Stomach 1.0 +order Xanthomonadales root:Host-associated:Plants:Rhizosphere:Soil 24.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater 4.0 order Xanthomonadales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Xanthomonadales root:Environmental:Aquatic:Thermal springs 1.0 @@ -22151,7 +22518,6 @@ order Xanthomonadales root:Host-associated:Plants:Root 7.0 order Xanthomonadales root:Engineered:Food production 6.0 order Xanthomonadales root:Environmental:Terrestrial:Deep subsurface 1.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Xanthomonadales root:Host-associated:Plants:Rhizosphere:Soil 24.0 order Xanthomonadales root:Engineered:Food production:Fermented seafood 1.0 order Xanthomonadales root:Environmental:Aquatic:Estuary 3.0 order Xanthomonadales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -22166,7 +22532,7 @@ order Xanthomonadales root:Environmental:Terrestrial:Soil:Clay 1.0 order Xanthomonadales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 order Xanthomonadales root:Engineered:Bioreactor:Continuous culture 4.0 order Xanthomonadales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +order Xanthomonadales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 order Xanthomonadales root:Environmental:Aquatic:Thermal springs:Sediment 1.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Groundwater 3.0 order Xanthomonadales root:Engineered:Wastewater:Water and sludge 8.0 @@ -22179,7 +22545,6 @@ order Xanthomonadales root:Host-associated:Insecta 4.0 order Xanthomonadales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Xanthomonadales root:Engineered:Built environment 1.0 order Xanthomonadales root:Host-associated:Birds:Digestive system 1.0 -order Xanthomonadales root:Engineered:Lab enrichment 5.0 order Xanthomonadales root:Host-associated:Plants:Rhizoplane:Endophytes 2.0 order Xanthomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -22197,7 +22562,7 @@ order Xanthomonadales root:Host-associated:Plants:Rhizome 1.0 order Xanthomonadales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 3.0 order Xanthomonadales root:Environmental:Air 1.0 order Xanthomonadales root:Host-associated:Arthropoda 1.0 -order Xanthomonadales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +order Xanthomonadales root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 order Xanthomonadales root:Host-associated:Fungi 1.0 order Xanthomonadales root:Engineered:Bioremediation 2.0 order Xanthomonadales root:Host-associated:Human:Respiratory system 1.0 @@ -22215,6 +22580,7 @@ order Xanthomonadales root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 order Xanthomonadales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 order Xanthomonadales root:Environmental:Terrestrial:Volcanic 2.0 order Xanthomonadales root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 +order Xanthomonadales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Xanthomonadales root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 order Xanthomonadales root:Host-associated:Protozoa 1.0 order Xanthomonadales root:Engineered:Solid waste:Composting:Grass 1.0 @@ -22291,12 +22657,12 @@ family Sinobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 4 family Sinobacteraceae root:Host-associated:Porifera 1.0 family Sinobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Sinobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 6.0 +family Sinobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Sinobacteraceae root:Environmental:Aquatic:Freshwater 3.0 family Sinobacteraceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Sinobacteraceae root:Engineered:Solid waste:Composting 5.0 family Sinobacteraceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Sinobacteraceae root:Host-associated:Plants:Root 3.0 -family Sinobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Sinobacteraceae root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 family Sinobacteraceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family Sinobacteraceae root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -22406,17 +22772,17 @@ family Nitrospiraceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Nitrospiraceae root:Environmental:Aquatic 1.0 family Nitrospiraceae root:Host-associated:Porifera 1.0 family Nitrospiraceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 +family Nitrospiraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Nitrospiraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 family Nitrospiraceae root:Environmental:Aquatic:Thermal springs 1.0 family Nitrospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Nitrospiraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Nitrospiraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Nitrospiraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Nitrospiraceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Nitrospiraceae root:Environmental:Terrestrial:Soil:Clay 1.0 family Nitrospiraceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family Nitrospiraceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -family Nitrospiraceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Nitrospiraceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 family Nitrospiraceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Nitrospiraceae root:Engineered:Built environment 1.0 family Nitrospiraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -22447,8 +22813,10 @@ genus Methanosarcina root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Methanosarcina root:Environmental:Terrestrial:Soil 17.0 genus Methanosarcina root:Environmental:Aquatic:Marine:Sediment 9.0 genus Methanosarcina root:Engineered:Biogas plant:Wet fermentation 2.0 +genus Methanosarcina root:Engineered:Lab enrichment 1.0 genus Methanosarcina root:Environmental:Terrestrial:Soil:Wetlands 4.0 genus Methanosarcina root:Environmental:Terrestrial:Soil:Grasslands 2.0 +genus Methanosarcina root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Methanosarcina root:Environmental:Aquatic:Marine:Coastal 2.0 genus Methanosarcina root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Methanosarcina root:Engineered:Solid waste:Composting 2.0 @@ -22456,7 +22824,6 @@ genus Methanosarcina root:Environmental:Terrestrial:Soil:Desert 1.0 genus Methanosarcina root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Methanosarcina root:Engineered:Lab enrichment:Defined media 1.0 genus Methanosarcina root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Methanosarcina root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Methanosarcina root:Engineered:Wastewater:Industrial wastewater 1.0 genus Methanosarcina root:Engineered:Modeled 1.0 genus Methanosarcina root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -22467,14 +22834,13 @@ genus Methanosarcina root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Methanosarcina root:Engineered:Wastewater:Water and sludge 3.0 genus Methanosarcina root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Methanosarcina root:Environmental:Terrestrial:Soil:Crop 1.0 -genus Methanosarcina root:Engineered:Lab enrichment 1.0 genus Methanosarcina root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Methanosarcina root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Methanosarcina root:Engineered:Biogas plant 2.0 genus Methanosarcina root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Methanosarcina root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Methanosarcina root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -genus Methanosarcina root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Methanosarcina root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 genus Methanosarcina root:Engineered:Bioremediation:Hydrocarbon 1.0 genus Methanosarcina root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus Methanosarcina root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 @@ -22500,9 +22866,9 @@ genus Fimbriimonas root:Engineered:Biogas plant:Wet fermentation 2.0 genus Fimbriimonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Fimbriimonas root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Fimbriimonas root:Environmental:Terrestrial:Soil:Grasslands 2.0 +genus Fimbriimonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Fimbriimonas root:Engineered:Solid waste:Composting 1.0 genus Fimbriimonas root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Fimbriimonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Fimbriimonas root:Engineered:Wastewater:Industrial wastewater 1.0 genus Fimbriimonas root:Engineered:Bioreactor:Continuous culture 1.0 genus Fimbriimonas root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 @@ -22623,7 +22989,7 @@ order Chthoniobacterales root:Mixed 3.0 order Chthoniobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Chthoniobacterales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Chthoniobacterales root:Host-associated:Plants:Rhizosphere 7.0 -order Chthoniobacterales root:Environmental:Terrestrial:Soil 27.0 +order Chthoniobacterales root:Environmental:Terrestrial:Soil 28.0 order Chthoniobacterales root:Environmental:Aquatic:Marine:Sediment 1.0 order Chthoniobacterales root:Environmental:Aquatic:Sediment 1.0 order Chthoniobacterales root:Environmental:Aquatic 1.0 @@ -22649,27 +23015,30 @@ family Beijerinckiaceae root:Engineered:Wastewater 1.0 family Beijerinckiaceae root:Host-associated:Plants:Phylloplane 1.0 family Beijerinckiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Beijerinckiaceae root:Environmental:Terrestrial:Soil 7.0 +family Beijerinckiaceae root:Engineered:Lab enrichment 2.0 family Beijerinckiaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Beijerinckiaceae root:Environmental:Terrestrial:Soil:Desert 2.0 -family Beijerinckiaceae root:Engineered:Lab enrichment 2.0 +family Beijerinckiaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Geothrix root:Environmental:Aquatic:Freshwater:Lake 3.0 genus Geothrix root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Geothrix root:Engineered:Wastewater:Activated Sludge 1.0 genus Geothrix root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Geothrix root:Environmental:Terrestrial:Soil 7.0 +genus Geothrix root:Engineered:Lab enrichment 1.0 genus Geothrix root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Geothrix root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Geothrix root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Geothrix root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Geothrix root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 -genus Geothrix root:Engineered:Lab enrichment 1.0 genus Geothrix root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Geothrix root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Geothrix root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +genus Geothrix root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Ferrovum root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Ferrovum root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Ferrovum root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Geobacter root:Environmental:Aquatic:Freshwater:Sediment 11.0 +genus Geobacter root:Environmental:Aquatic:Freshwater:Sediment 12.0 genus Geobacter root:Environmental:Aquatic:Marine 1.0 genus Geobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Geobacter root:Environmental:Terrestrial:Soil:Forest soil 7.0 @@ -22689,8 +23058,10 @@ genus Geobacter root:Environmental:Terrestrial:Soil 31.0 genus Geobacter root:Environmental:Aquatic:Marine:Sediment 2.0 genus Geobacter root:Environmental:Aquatic:Sediment 6.0 genus Geobacter root:Environmental:Aquatic 1.0 +genus Geobacter root:Engineered:Lab enrichment 3.0 genus Geobacter root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Geobacter root:Environmental:Terrestrial:Soil:Grasslands 5.0 +genus Geobacter root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Geobacter root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Geobacter root:Environmental:Aquatic:Marine:Coastal 2.0 genus Geobacter root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -22698,7 +23069,6 @@ genus Geobacter root:Engineered:Lab enrichment:Defined media 2.0 genus Geobacter root:Host-associated:Plants:Root 1.0 genus Geobacter root:Environmental:Terrestrial:Deep subsurface 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 9.0 -genus Geobacter root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Geobacter root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 genus Geobacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Geobacter root:Host-associated:Insecta:Digestive system 1.0 @@ -22712,7 +23082,6 @@ genus Geobacter root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Groundwater 3.0 genus Geobacter root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -genus Geobacter root:Engineered:Lab enrichment 3.0 genus Geobacter root:Environmental:Terrestrial:Soil:Boreal forest 1.0 genus Geobacter root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -22720,13 +23089,13 @@ genus Geobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3 genus Geobacter root:Engineered 1.0 genus Geobacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 -genus Geobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Geobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 genus Geobacter root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus Geobacter root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Geobacter root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 genus Geobacter root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 -genus Geobacter root:Host-associated:Annelida 1.0 genus Geobacter root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +genus Geobacter root:Host-associated:Annelida 1.0 genus Prosthecobacter root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Prosthecobacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Prosthecobacter root:Environmental:Aquatic:Marine 1.0 @@ -22745,7 +23114,7 @@ genus Prosthecobacter root:Engineered:Solid waste:Composting 1.0 genus Prosthecobacter root:Environmental:Aquatic:Estuary 2.0 genus Prosthecobacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Prosthecobacter root:Engineered:Bioreactor:Continuous culture 1.0 -genus Prosthecobacter root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +genus Prosthecobacter root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 genus Prosthecobacter root:Engineered:Wastewater:Water and sludge 1.0 genus Prosthecobacter root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 genus Parasediminibacterium root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -22882,10 +23251,10 @@ family mitochondria root:Host-associated:Plants:Rhizosphere 1.0 family mitochondria root:Environmental:Terrestrial:Soil 8.0 family mitochondria root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family mitochondria root:Environmental:Aquatic:Freshwater:Lotic 1.0 +family mitochondria root:Host-associated:Plants:Rhizosphere:Soil 3.0 family mitochondria root:Environmental:Aquatic:Freshwater 1.0 family mitochondria root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family mitochondria root:Engineered:Food production 3.0 -family mitochondria root:Host-associated:Plants:Rhizosphere:Soil 3.0 family mitochondria root:Environmental:Aquatic:Freshwater:Lentic 2.0 family mitochondria root:Host-associated:Insecta:Digestive system 1.0 family mitochondria root:Host-associated 4.0 @@ -22905,20 +23274,20 @@ family mitochondria root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 family mitochondria root:Host-associated:Algae:Brown Algae 1.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Pond 1.0 -phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Fecal 25.0 -phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Fecal 26.0 +phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 phylum Fusobacteria root:Host-associated:Birds:Digestive system:Fecal 6.0 phylum Fusobacteria root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Fusobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 123.0 -phylum Fusobacteria root:Environmental:Aquatic:Marine 12.0 +phylum Fusobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 130.0 +phylum Fusobacteria root:Environmental:Aquatic:Marine 13.0 phylum Fusobacteria root:Host-associated:Fish 2.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Oceanic 3.0 -phylum Fusobacteria root:Host-associated:Mammals:Digestive system 9.0 +phylum Fusobacteria root:Host-associated:Mammals:Digestive system 10.0 phylum Fusobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 phylum Fusobacteria root:Environmental:Terrestrial:Soil:Forest soil 1.0 -phylum Fusobacteria root:Host-associated:Human 15.0 +phylum Fusobacteria root:Host-associated:Human 16.0 phylum Fusobacteria root:Host-associated:Plants 5.0 -phylum Fusobacteria root:Host-associated:Human:Digestive system:Large intestine 7.0 +phylum Fusobacteria root:Host-associated:Human:Digestive system:Large intestine 8.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Fusobacteria root:Engineered:Wastewater:Activated Sludge 3.0 phylum Fusobacteria root:Host-associated:Human:Skin 23.0 @@ -22926,11 +23295,11 @@ phylum Fusobacteria root:Mixed 10.0 phylum Fusobacteria root:Host-associated:Mammals 5.0 phylum Fusobacteria root:Host-associated:Amphibia 1.0 phylum Fusobacteria root:Host-associated:Human:Digestive system:Intestine 3.0 -phylum Fusobacteria root:Engineered:Food production:Fermented beverages 1.0 +phylum Fusobacteria root:Engineered:Food production:Fermented beverages 2.0 phylum Fusobacteria root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Fusobacteria root:Engineered:Wastewater 7.0 phylum Fusobacteria root:Host-associated:Human:Reproductive system:Vagina 15.0 -phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral 61.0 +phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral 62.0 phylum Fusobacteria root:Engineered:Food production:Dairy products 9.0 phylum Fusobacteria root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Fusobacteria root:Host-associated:Plants:Phylloplane 2.0 @@ -22941,7 +23310,9 @@ phylum Fusobacteria root:Environmental:Aquatic:Marine:Sediment 14.0 phylum Fusobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Fusobacteria root:Environmental:Aquatic:Sediment 1.0 +phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Fusobacteria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 +phylum Fusobacteria root:Engineered:Lab enrichment 1.0 phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 phylum Fusobacteria root:Environmental:Terrestrial:Soil:Grasslands 1.0 phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 @@ -22954,7 +23325,7 @@ phylum Fusobacteria root:Environmental:Aquatic:Marine:Coastal 6.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Cold seeps 1.0 phylum Fusobacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 phylum Fusobacteria root:Environmental:Terrestrial:Soil:Desert 1.0 -phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 20.0 +phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 21.0 phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 phylum Fusobacteria root:Host-associated:Arthropoda:Digestive system:Gut 2.0 @@ -22965,18 +23336,18 @@ phylum Fusobacteria root:Environmental:Aquatic:Marine:Oil-contaminated sediment phylum Fusobacteria root:Engineered:Food production 4.0 phylum Fusobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Large intestine 3.0 phylum Fusobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -phylum Fusobacteria root:Engineered:Food production:Fermented seafood 1.0 +phylum Fusobacteria root:Engineered:Food production:Fermented seafood 2.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Lentic 1.0 phylum Fusobacteria root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 phylum Fusobacteria root:Host-associated:Animal:Digestive system 4.0 phylum Fusobacteria root:Engineered:Wastewater:Industrial wastewater 1.0 phylum Fusobacteria root:Engineered:Modeled 2.0 -phylum Fusobacteria root:Host-associated:Insecta:Digestive system 3.0 +phylum Fusobacteria root:Host-associated:Insecta:Digestive system 4.0 phylum Fusobacteria root:Host-associated 4.0 phylum Fusobacteria root:Host-associated:Mollusca 2.0 -phylum Fusobacteria root:Host-associated:Fish:Digestive system 1.0 +phylum Fusobacteria root:Host-associated:Fish:Digestive system 2.0 phylum Fusobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 phylum Fusobacteria root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 phylum Fusobacteria root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -22985,21 +23356,20 @@ phylum Fusobacteria root:Engineered:Bioreactor:Continuous culture 3.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 phylum Fusobacteria root:Host-associated:Human:Reproductive system:Female 2.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Pelagic 3.0 -phylum Fusobacteria root:Engineered:Wastewater:Water and sludge 4.0 +phylum Fusobacteria root:Engineered:Wastewater:Water and sludge 6.0 +phylum Fusobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Fusobacteria root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Fusobacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Fusobacteria root:Host-associated:Mammals:Gastrointestinal tract 2.0 phylum Fusobacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Fusobacteria root:Host-associated:Reptile:Oral cavity 1.0 -phylum Fusobacteria root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Fusobacteria root:Environmental:Aquatic:Freshwater:Ice 1.0 phylum Fusobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 phylum Fusobacteria root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Fusobacteria root:Host-associated:Insecta 5.0 phylum Fusobacteria root:Engineered:Built environment 8.0 phylum Fusobacteria root:Host-associated:Birds:Digestive system 3.0 -phylum Fusobacteria root:Engineered:Lab enrichment 1.0 phylum Fusobacteria root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Fusobacteria root:Host-associated:Animal:Digestive system:Fecal 2.0 phylum Fusobacteria root:Host-associated:Mammals:Circulatory system:Blood 1.0 @@ -23018,6 +23388,7 @@ phylum Fusobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal phylum Fusobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 phylum Fusobacteria root:Host-associated:Human:Respiratory system 4.0 phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +phylum Fusobacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Fusobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 phylum Fusobacteria root:Host-associated:Mammals:Skin 2.0 phylum Fusobacteria root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 @@ -23036,28 +23407,30 @@ phylum Fusobacteria root:Host-associated:Mammals:Excretory system 1.0 phylum Fusobacteria root:Host-associated:Mollusca:Digestive system:Glands 1.0 phylum Fusobacteria root:Host-associated:Algae:Brown Algae 1.0 phylum Fusobacteria root:Host-associated:Human:Milk 1.0 +phylum Fusobacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Fusobacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 phylum Fusobacteria root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 class Fusobacteriia root:Environmental:Aquatic:Freshwater:Lake 1.0 -class Fusobacteriia root:Host-associated:Mammals:Digestive system:Fecal 11.0 -class Fusobacteriia root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +class Fusobacteriia root:Host-associated:Mammals:Digestive system:Fecal 12.0 +class Fusobacteriia root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 class Fusobacteriia root:Host-associated:Birds:Digestive system:Fecal 2.0 -class Fusobacteriia root:Host-associated:Human:Digestive system:Large intestine:Fecal 39.0 +class Fusobacteriia root:Host-associated:Human:Digestive system:Large intestine:Fecal 40.0 class Fusobacteriia root:Environmental:Aquatic:Marine 5.0 class Fusobacteriia root:Host-associated:Fish 1.0 -class Fusobacteriia root:Host-associated:Mammals:Digestive system 5.0 +class Fusobacteriia root:Host-associated:Mammals:Digestive system 6.0 class Fusobacteriia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 -class Fusobacteriia root:Host-associated:Human 11.0 +class Fusobacteriia root:Host-associated:Human 12.0 class Fusobacteriia root:Host-associated:Plants 1.0 class Fusobacteriia root:Host-associated:Human:Digestive system:Large intestine 2.0 class Fusobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Fusobacteriia root:Host-associated:Human:Skin 7.0 class Fusobacteriia root:Mixed 6.0 class Fusobacteriia root:Host-associated:Mammals 1.0 +class Fusobacteriia root:Engineered:Food production:Fermented beverages 1.0 class Fusobacteriia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Fusobacteriia root:Engineered:Wastewater 3.0 class Fusobacteriia root:Host-associated:Human:Reproductive system:Vagina 13.0 -class Fusobacteriia root:Host-associated:Human:Digestive system:Oral 61.0 +class Fusobacteriia root:Host-associated:Human:Digestive system:Oral 62.0 class Fusobacteriia root:Engineered:Food production:Dairy products 4.0 class Fusobacteriia root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Fusobacteriia root:Host-associated:Plants:Phylloplane 1.0 @@ -23065,7 +23438,9 @@ class Fusobacteriia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Fusobacteriia root:Environmental:Terrestrial:Soil 1.0 class Fusobacteriia root:Environmental:Aquatic:Marine:Sediment 8.0 class Fusobacteriia root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +class Fusobacteriia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Fusobacteriia root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 +class Fusobacteriia root:Engineered:Lab enrichment 1.0 class Fusobacteriia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 class Fusobacteriia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 class Fusobacteriia root:Host-associated:Birds:Digestive system:Ceca 2.0 @@ -23081,12 +23456,13 @@ class Fusobacteriia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Fusobacteriia root:Engineered:Food production 2.0 class Fusobacteriia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 class Fusobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 +class Fusobacteriia root:Engineered:Food production:Fermented seafood 1.0 class Fusobacteriia root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 class Fusobacteriia root:Host-associated:Animal:Digestive system 1.0 class Fusobacteriia root:Engineered:Modeled 1.0 class Fusobacteriia root:Host-associated:Insecta:Digestive system 2.0 class Fusobacteriia root:Host-associated 1.0 -class Fusobacteriia root:Host-associated:Fish:Digestive system 1.0 +class Fusobacteriia root:Host-associated:Fish:Digestive system 2.0 class Fusobacteriia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 class Fusobacteriia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 class Fusobacteriia root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -23095,13 +23471,12 @@ class Fusobacteriia root:Engineered:Bioreactor:Continuous culture 1.0 class Fusobacteriia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 class Fusobacteriia root:Host-associated:Human:Reproductive system:Female 2.0 class Fusobacteriia root:Engineered:Wastewater:Water and sludge 2.0 +class Fusobacteriia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Fusobacteriia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 class Fusobacteriia root:Host-associated:Mammals:Gastrointestinal tract 1.0 -class Fusobacteriia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Fusobacteriia root:Host-associated:Fish:Digestive system:Intestine 1.0 class Fusobacteriia root:Host-associated:Insecta 1.0 class Fusobacteriia root:Engineered:Built environment 2.0 -class Fusobacteriia root:Engineered:Lab enrichment 1.0 class Fusobacteriia root:Host-associated:Animal:Digestive system:Fecal 2.0 class Fusobacteriia root:Host-associated:Mammals:Circulatory system:Blood 1.0 class Fusobacteriia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 @@ -23113,6 +23488,7 @@ class Fusobacteriia root:Host-associated:Arthropoda 1.0 class Fusobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Fusobacteriia root:Host-associated:Human:Respiratory system 3.0 class Fusobacteriia root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Fusobacteriia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Fusobacteriia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Fusobacteriia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 class Fusobacteriia root:Host-associated:Birds:Respiratory system 1.0 @@ -23125,16 +23501,17 @@ class Fusobacteriia root:Host-associated:Human:Respiratory system:Pulmonary syst class Fusobacteriia root:Host-associated:Mammals:Excretory system 1.0 class Fusobacteriia root:Host-associated:Mollusca:Digestive system:Glands 1.0 class Fusobacteriia root:Host-associated:Human:Milk 1.0 +class Fusobacteriia root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 class Fusobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 order Fusobacteriales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Fusobacteriales root:Host-associated:Mammals:Digestive system:Fecal 9.0 -order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 order Fusobacteriales root:Host-associated:Birds:Digestive system:Fecal 2.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 33.0 order Fusobacteriales root:Environmental:Aquatic:Marine 3.0 -order Fusobacteriales root:Host-associated:Mammals:Digestive system 5.0 +order Fusobacteriales root:Host-associated:Mammals:Digestive system 6.0 order Fusobacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -order Fusobacteriales root:Host-associated:Human 9.0 +order Fusobacteriales root:Host-associated:Human 10.0 order Fusobacteriales root:Host-associated:Plants 1.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Large intestine 2.0 order Fusobacteriales root:Host-associated:Human:Skin 3.0 @@ -23144,12 +23521,13 @@ order Fusobacteriales root:Host-associated:Human:Digestive system:Intestine 1.0 order Fusobacteriales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Fusobacteriales root:Engineered:Wastewater 3.0 order Fusobacteriales root:Host-associated:Human:Reproductive system:Vagina 13.0 -order Fusobacteriales root:Host-associated:Human:Digestive system:Oral 58.0 +order Fusobacteriales root:Host-associated:Human:Digestive system:Oral 59.0 order Fusobacteriales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Fusobacteriales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Fusobacteriales root:Environmental:Terrestrial:Soil 1.0 order Fusobacteriales root:Environmental:Aquatic:Marine:Sediment 7.0 order Fusobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +order Fusobacteriales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Fusobacteriales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 order Fusobacteriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 @@ -23165,13 +23543,14 @@ order Fusobacteriales root:Host-associated:Mammals:Digestive system:Foregut:Rume order Fusobacteriales root:Engineered:Food production 1.0 order Fusobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 order Fusobacteriales root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 +order Fusobacteriales root:Engineered:Food production:Fermented seafood 1.0 order Fusobacteriales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Fusobacteriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Fusobacteriales root:Host-associated:Animal:Digestive system 2.0 order Fusobacteriales root:Engineered:Modeled 1.0 order Fusobacteriales root:Host-associated:Insecta:Digestive system 1.0 order Fusobacteriales root:Host-associated 1.0 -order Fusobacteriales root:Host-associated:Fish:Digestive system 1.0 +order Fusobacteriales root:Host-associated:Fish:Digestive system 2.0 order Fusobacteriales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 order Fusobacteriales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -23191,6 +23570,7 @@ order Fusobacteriales root:Engineered 1.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 order Fusobacteriales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Fusobacteriales root:Host-associated:Human:Respiratory system 3.0 +order Fusobacteriales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Fusobacteriales root:Host-associated:Birds:Respiratory system 1.0 order Fusobacteriales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 order Fusobacteriales root:Host-associated:Mollusca:Digestive system 1.0 @@ -23199,61 +23579,66 @@ order Fusobacteriales root:Host-associated:Mammals:Nervous system:Brain 1.0 order Fusobacteriales root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 order Fusobacteriales root:Host-associated:Mollusca:Digestive system:Glands 1.0 order Fusobacteriales root:Host-associated:Human:Milk 1.0 +order Fusobacteriales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Fusobacteriales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Lactobacillales root:Host-associated:Mammals:Digestive system:Fecal 53.0 -order Lactobacillales root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system:Fecal 56.0 +order Lactobacillales root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 order Lactobacillales root:Host-associated:Birds:Digestive system:Fecal 12.0 order Lactobacillales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 order Lactobacillales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -order Lactobacillales root:Host-associated:Human:Digestive system:Large intestine:Fecal 176.0 -order Lactobacillales root:Environmental:Aquatic:Marine 8.0 +order Lactobacillales root:Host-associated:Human:Digestive system:Large intestine:Fecal 187.0 +order Lactobacillales root:Environmental:Aquatic:Marine 9.0 order Lactobacillales root:Host-associated:Fish 1.0 order Lactobacillales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 order Lactobacillales root:Environmental:Aquatic:Marine:Oceanic 2.0 -order Lactobacillales root:Host-associated:Mammals:Digestive system 26.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system 27.0 order Lactobacillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 4.0 order Lactobacillales root:Environmental:Terrestrial:Geologic 1.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Forest soil 2.0 -order Lactobacillales root:Host-associated:Human 20.0 +order Lactobacillales root:Host-associated:Human 21.0 order Lactobacillales root:Host-associated:Plants 5.0 order Lactobacillales root:Engineered:Food production:Silage fermentation 1.0 -order Lactobacillales root:Host-associated:Human:Digestive system:Large intestine 13.0 +order Lactobacillales root:Host-associated:Human:Digestive system:Large intestine 14.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Agricultural 2.0 order Lactobacillales root:Engineered:Bioreactor 11.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 order Lactobacillales root:Engineered:Wastewater:Activated Sludge 20.0 order Lactobacillales root:Host-associated:Human:Skin 24.0 -order Lactobacillales root:Mixed 10.0 +order Lactobacillales root:Mixed 12.0 order Lactobacillales root:Host-associated:Mammals 10.0 order Lactobacillales root:Host-associated:Amphibia 1.0 order Lactobacillales root:Host-associated:Human:Digestive system:Intestine 1.0 -order Lactobacillales root:Engineered:Food production:Fermented beverages 12.0 +order Lactobacillales root:Engineered:Food production:Fermented beverages 13.0 order Lactobacillales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Lactobacillales root:Engineered:Wastewater 9.0 order Lactobacillales root:Host-associated:Human:Reproductive system:Vagina 16.0 order Lactobacillales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -order Lactobacillales root:Host-associated:Human:Digestive system:Oral 64.0 -order Lactobacillales root:Engineered:Food production:Dairy products 27.0 +order Lactobacillales root:Host-associated:Human:Digestive system:Oral 65.0 +order Lactobacillales root:Engineered:Food production:Dairy products 29.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Lactobacillales root:Host-associated:Plants:Phylloplane 3.0 order Lactobacillales root:Host-associated:Plants:Rhizosphere 1.0 order Lactobacillales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Lactobacillales root:Environmental:Terrestrial:Soil 18.0 order Lactobacillales root:Environmental:Aquatic:Marine:Sediment 19.0 -order Lactobacillales root:Engineered:Modeled:Simulated communities (microbial mixture) 8.0 +order Lactobacillales root:Engineered:Modeled:Simulated communities (microbial mixture) 9.0 +order Lactobacillales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Lotic 2.0 order Lactobacillales root:Environmental:Aquatic:Sediment 1.0 order Lactobacillales root:Environmental:Aquatic 2.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system:Midgut 4.0 order Lactobacillales root:Engineered:Biogas plant:Wet fermentation 4.0 order Lactobacillales root:Host-associated:Porifera 1.0 +order Lactobacillales root:Engineered:Lab enrichment 4.0 order Lactobacillales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Lactobacillales root:Engineered:Lab Synthesis 1.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Grasslands 2.0 order Lactobacillales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 order Lactobacillales root:Host-associated:Birds:Digestive system:Ceca 10.0 +order Lactobacillales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Lactobacillales root:Host-associated:Human:Digestive system 33.0 order Lactobacillales root:Environmental:Aquatic:Freshwater 3.0 order Lactobacillales root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 @@ -23264,7 +23649,7 @@ order Lactobacillales root:Engineered:Solid waste:Composting 5.0 order Lactobacillales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Desert 1.0 order Lactobacillales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -order Lactobacillales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 53.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 54.0 order Lactobacillales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 order Lactobacillales root:Host-associated:Arthropoda:Digestive system:Gut 6.0 order Lactobacillales root:Engineered:Lab enrichment:Defined media 3.0 @@ -23273,10 +23658,9 @@ order Lactobacillales root:Environmental:Aquatic:Marine:Oil-contaminated sedimen order Lactobacillales root:Engineered:Food production 13.0 order Lactobacillales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Lactobacillales root:Host-associated:Plants:Rhizosphere:Soil 2.0 -order Lactobacillales root:Host-associated:Mammals:Digestive system:Large intestine 12.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system:Large intestine 13.0 order Lactobacillales root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 -order Lactobacillales root:Engineered:Food production:Fermented seafood 2.0 +order Lactobacillales root:Engineered:Food production:Fermented seafood 3.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Lactobacillales root:Host-associated:Human:Skin:Naris 1.0 order Lactobacillales root:Engineered:Modeled:Simulated communities (sequence read mixture) 6.0 @@ -23284,9 +23668,8 @@ order Lactobacillales root:Host-associated:Animal:Digestive system 6.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Lactobacillales root:Engineered:Wastewater:Industrial wastewater 2.0 order Lactobacillales root:Engineered:Modeled 2.0 -order Lactobacillales root:Host-associated:Insecta:Digestive system 6.0 +order Lactobacillales root:Host-associated:Insecta:Digestive system 7.0 order Lactobacillales root:Host-associated 4.0 -order Lactobacillales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Lactobacillales root:Host-associated:Fish:Digestive system 1.0 order Lactobacillales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 order Lactobacillales root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -23297,7 +23680,7 @@ order Lactobacillales root:Host-associated:Fish:Digestive system:Foregut 4.0 order Lactobacillales root:Engineered:Bioreactor:Continuous culture 3.0 order Lactobacillales root:Host-associated:Human:Reproductive system:Female 2.0 order Lactobacillales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -order Lactobacillales root:Engineered:Wastewater:Water and sludge 9.0 +order Lactobacillales root:Engineered:Wastewater:Water and sludge 10.0 order Lactobacillales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 order Lactobacillales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Lactobacillales root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -23310,9 +23693,8 @@ order Lactobacillales root:Engineered:Bioremediation:Terephthalate:Wastewater 1. order Lactobacillales root:Environmental:Terrestrial:Soil:Crop 1.0 order Lactobacillales root:Host-associated:Fish:Digestive system:Intestine 2.0 order Lactobacillales root:Host-associated:Insecta 7.0 -order Lactobacillales root:Engineered:Built environment 12.0 +order Lactobacillales root:Engineered:Built environment 13.0 order Lactobacillales root:Host-associated:Birds:Digestive system 7.0 -order Lactobacillales root:Engineered:Lab enrichment 4.0 order Lactobacillales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Lactobacillales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Lactobacillales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -23330,18 +23712,19 @@ order Lactobacillales root:Engineered 4.0 order Lactobacillales root:Engineered:Industrial production 1.0 order Lactobacillales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 order Lactobacillales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 -order Lactobacillales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Lactobacillales root:Environmental:Air 1.0 order Lactobacillales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Lactobacillales root:Host-associated:Arthropoda 2.0 order Lactobacillales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 order Lactobacillales root:Host-associated:Human:Respiratory system 4.0 order Lactobacillales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +order Lactobacillales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Lactobacillales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 order Lactobacillales root:Engineered:Biotransformation 1.0 order Lactobacillales root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 order Lactobacillales root:Host-associated:Mammals:Skin 2.0 order Lactobacillales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +order Lactobacillales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Lactobacillales root:Host-associated:Birds:Respiratory system 2.0 order Lactobacillales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 4.0 order Lactobacillales root:Host-associated:Human:Circulatory system:Blood 1.0 @@ -23361,34 +23744,36 @@ order Lactobacillales root:Engineered:Solid waste:Solid animal waste 1.0 order Bifidobacteriales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Fecal 16.0 order Bifidobacteriales root:Host-associated:Birds:Digestive system:Fecal 1.0 -order Bifidobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 162.0 +order Bifidobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 172.0 order Bifidobacteriales root:Environmental:Aquatic:Marine 1.0 -order Bifidobacteriales root:Host-associated:Mammals:Digestive system 7.0 -order Bifidobacteriales root:Host-associated:Human 4.0 -order Bifidobacteriales root:Host-associated:Human:Digestive system:Large intestine 13.0 +order Bifidobacteriales root:Host-associated:Mammals:Digestive system 8.0 +order Bifidobacteriales root:Host-associated:Human 5.0 +order Bifidobacteriales root:Host-associated:Human:Digestive system:Large intestine 14.0 order Bifidobacteriales root:Engineered:Bioreactor 3.0 order Bifidobacteriales root:Engineered:Wastewater:Activated Sludge 1.0 order Bifidobacteriales root:Mixed 1.0 order Bifidobacteriales root:Host-associated:Mammals 1.0 -order Bifidobacteriales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Bifidobacteriales root:Host-associated:Human:Digestive system:Intestine 4.0 order Bifidobacteriales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Bifidobacteriales root:Engineered:Wastewater 1.0 order Bifidobacteriales root:Host-associated:Human:Reproductive system:Vagina 14.0 order Bifidobacteriales root:Host-associated:Human:Digestive system:Oral 3.0 -order Bifidobacteriales root:Engineered:Food production:Dairy products 4.0 +order Bifidobacteriales root:Engineered:Food production:Dairy products 5.0 order Bifidobacteriales root:Host-associated:Plants:Rhizosphere 1.0 order Bifidobacteriales root:Environmental:Terrestrial:Soil 2.0 order Bifidobacteriales root:Environmental:Aquatic:Marine:Sediment 3.0 -order Bifidobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +order Bifidobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Midgut 3.0 +order Bifidobacteriales root:Engineered:Lab enrichment 1.0 order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 order Bifidobacteriales root:Host-associated:Birds:Digestive system:Ceca 1.0 order Bifidobacteriales root:Host-associated:Human:Digestive system 23.0 order Bifidobacteriales root:Environmental:Aquatic:Freshwater 2.0 order Bifidobacteriales root:Environmental:Aquatic:Marine:Coastal 1.0 -order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 14.0 +order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 15.0 order Bifidobacteriales root:Engineered:Food production 1.0 order Bifidobacteriales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 -order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 4.0 +order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 5.0 order Bifidobacteriales root:Host-associated:Animal:Digestive system 2.0 order Bifidobacteriales root:Host-associated:Insecta:Digestive system 1.0 order Bifidobacteriales root:Host-associated 2.0 @@ -23400,14 +23785,12 @@ order Bifidobacteriales root:Host-associated:Human:Digestive system:Large intest order Bifidobacteriales root:Environmental:Terrestrial 1.0 order Bifidobacteriales root:Host-associated:Insecta 1.0 order Bifidobacteriales root:Host-associated:Birds:Digestive system 2.0 -order Bifidobacteriales root:Engineered:Lab enrichment 1.0 order Bifidobacteriales root:Host-associated:Animal:Digestive system:Fecal 3.0 order Bifidobacteriales root:Engineered:Food production:Fermented vegetables 1.0 order Bifidobacteriales root:Host-associated:Mammals:Respiratory system 4.0 order Bifidobacteriales root:Host-associated:Birds 1.0 order Bifidobacteriales root:Engineered 1.0 order Bifidobacteriales root:Environmental:Aquatic:Aquaculture 1.0 -order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Bifidobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 order Bifidobacteriales root:Host-associated:Human:Circulatory system:Blood 1.0 order Bifidobacteriales root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -23420,38 +23803,38 @@ family S24-7 root:Host-associated:Plants 1.0 family S24-7 root:Host-associated:Mammals 1.0 family S24-7 root:Engineered:Food production:Dairy products 1.0 family S24-7 root:Environmental:Terrestrial:Soil 1.0 +family S24-7 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +family S24-7 root:Host-associated:Mammals:Digestive system:Midgut 2.0 family S24-7 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 12.0 +family S24-7 root:Host-associated:Plants:Rhizosphere:Soil 3.0 family S24-7 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 24.0 family S24-7 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 family S24-7 root:Engineered:Food production 1.0 -family S24-7 root:Host-associated:Plants:Rhizosphere:Soil 3.0 family S24-7 root:Host-associated:Mammals:Digestive system:Large intestine 5.0 family S24-7 root:Host-associated:Animal:Digestive system 1.0 family S24-7 root:Host-associated 1.0 -family S24-7 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family S24-7 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 -family S24-7 root:Host-associated:Mammals:Digestive system:Midgut 2.0 family S24-7 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 family S24-7 root:Host-associated:Mammals:Excretory system 1.0 family S24-7 root:Host-associated:Mammals:Milk 1.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 -family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Fecal 41.0 +family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Fecal 42.0 family Bacteroidaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Bacteroidaceae root:Host-associated:Birds:Digestive system:Fecal 9.0 -family Bacteroidaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 183.0 +family Bacteroidaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 192.0 family Bacteroidaceae root:Environmental:Aquatic:Marine 4.0 -family Bacteroidaceae root:Host-associated:Mammals:Digestive system 20.0 -family Bacteroidaceae root:Host-associated:Human 6.0 -family Bacteroidaceae root:Host-associated:Human:Digestive system:Large intestine 12.0 +family Bacteroidaceae root:Host-associated:Mammals:Digestive system 21.0 +family Bacteroidaceae root:Host-associated:Human 7.0 +family Bacteroidaceae root:Host-associated:Human:Digestive system:Large intestine 13.0 family Bacteroidaceae root:Engineered:Bioreactor 7.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Bacteroidaceae root:Engineered:Wastewater:Activated Sludge 4.0 family Bacteroidaceae root:Host-associated:Human:Skin 1.0 family Bacteroidaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Bacteroidaceae root:Mixed 4.0 +family Bacteroidaceae root:Mixed 6.0 family Bacteroidaceae root:Host-associated:Mammals 4.0 family Bacteroidaceae root:Host-associated:Amphibia 1.0 -family Bacteroidaceae root:Host-associated:Human:Digestive system:Intestine 3.0 +family Bacteroidaceae root:Host-associated:Human:Digestive system:Intestine 4.0 family Bacteroidaceae root:Engineered:Food production:Fermented beverages 1.0 family Bacteroidaceae root:Engineered:Wastewater 8.0 family Bacteroidaceae root:Host-associated:Human:Reproductive system:Vagina 1.0 @@ -23461,26 +23844,29 @@ family Bacteroidaceae root:Host-associated:Plants:Phylloplane 1.0 family Bacteroidaceae root:Host-associated:Plants:Rhizosphere 1.0 family Bacteroidaceae root:Environmental:Terrestrial:Soil 3.0 family Bacteroidaceae root:Environmental:Aquatic:Marine:Sediment 7.0 -family Bacteroidaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Bacteroidaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +family Bacteroidaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Bacteroidaceae root:Environmental:Aquatic:Sediment 1.0 family Bacteroidaceae root:Environmental:Aquatic 2.0 +family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Midgut 4.0 family Bacteroidaceae root:Engineered:Biogas plant:Wet fermentation 2.0 +family Bacteroidaceae root:Engineered:Lab enrichment 1.0 family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 family Bacteroidaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Bacteroidaceae root:Host-associated:Birds:Digestive system:Ceca 6.0 +family Bacteroidaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Bacteroidaceae root:Host-associated:Human:Digestive system 34.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater 1.0 family Bacteroidaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Bacteroidaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Bacteroidaceae root:Engineered:Solid waste:Composting 2.0 family Bacteroidaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 39.0 +family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 40.0 family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 family Bacteroidaceae root:Engineered:Lab enrichment:Defined media 1.0 family Bacteroidaceae root:Engineered:Food production 1.0 family Bacteroidaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Bacteroidaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Large intestine 10.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Bacteroidaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 @@ -23489,20 +23875,18 @@ family Bacteroidaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Bacteroidaceae root:Engineered:Modeled 2.0 family Bacteroidaceae root:Host-associated:Insecta:Digestive system 1.0 family Bacteroidaceae root:Host-associated 1.0 -family Bacteroidaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Bacteroidaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 family Bacteroidaceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Bacteroidaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 family Bacteroidaceae root:Host-associated:Human:Reproductive system:Female 1.0 family Bacteroidaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Bacteroidaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Bacteroidaceae root:Engineered:Wastewater:Water and sludge 3.0 family Bacteroidaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 family Bacteroidaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Bacteroidaceae root:Environmental:Terrestrial 1.0 family Bacteroidaceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 family Bacteroidaceae root:Engineered:Built environment 1.0 family Bacteroidaceae root:Host-associated:Birds:Digestive system 2.0 -family Bacteroidaceae root:Engineered:Lab enrichment 1.0 family Bacteroidaceae root:Host-associated:Animal:Digestive system:Fecal 4.0 family Bacteroidaceae root:Engineered:Biogas plant 2.0 family Bacteroidaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 2.0 @@ -23512,37 +23896,37 @@ family Bacteroidaceae root:Host-associated:Mammals:Respiratory system 4.0 family Bacteroidaceae root:Host-associated:Birds 4.0 family Bacteroidaceae root:Engineered 2.0 family Bacteroidaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Midgut 3.0 family Bacteroidaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 family Bacteroidaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Bacteroidaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Bacteroidaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 family Bacteroidaceae root:Host-associated:Mammals:Milk 1.0 +family Bacteroidaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Fecal 69.0 -family Lachnospiraceae root:Host-associated:Human:Digestive system:Oral:Saliva 7.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Fecal 71.0 +family Lachnospiraceae root:Host-associated:Human:Digestive system:Oral:Saliva 8.0 family Lachnospiraceae root:Host-associated:Birds:Digestive system:Fecal 12.0 family Lachnospiraceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 3.0 family Lachnospiraceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -family Lachnospiraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 188.0 +family Lachnospiraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 199.0 family Lachnospiraceae root:Environmental:Aquatic:Marine 11.0 family Lachnospiraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system 33.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system 35.0 family Lachnospiraceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 -family Lachnospiraceae root:Host-associated:Human 9.0 +family Lachnospiraceae root:Host-associated:Human 10.0 family Lachnospiraceae root:Host-associated:Plants 1.0 -family Lachnospiraceae root:Host-associated:Human:Digestive system:Large intestine 13.0 +family Lachnospiraceae root:Host-associated:Human:Digestive system:Large intestine 14.0 family Lachnospiraceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Lachnospiraceae root:Engineered:Bioreactor 25.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 family Lachnospiraceae root:Engineered:Wastewater:Activated Sludge 11.0 family Lachnospiraceae root:Host-associated:Human:Skin 3.0 family Lachnospiraceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Lachnospiraceae root:Mixed 4.0 -family Lachnospiraceae root:Host-associated:Mammals 7.0 -family Lachnospiraceae root:Host-associated:Human:Digestive system:Intestine 3.0 +family Lachnospiraceae root:Mixed 6.0 +family Lachnospiraceae root:Host-associated:Mammals 8.0 +family Lachnospiraceae root:Host-associated:Human:Digestive system:Intestine 4.0 family Lachnospiraceae root:Engineered:Food production:Fermented beverages 2.0 family Lachnospiraceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Lachnospiraceae root:Engineered:Wastewater 11.0 @@ -23556,29 +23940,32 @@ family Lachnospiraceae root:Host-associated:Plants:Rhizosphere 1.0 family Lachnospiraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Lachnospiraceae root:Environmental:Terrestrial:Soil 7.0 family Lachnospiraceae root:Environmental:Aquatic:Marine:Sediment 6.0 -family Lachnospiraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Lachnospiraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Lachnospiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 family Lachnospiraceae root:Environmental:Aquatic:Sediment 2.0 family Lachnospiraceae root:Environmental:Aquatic 3.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Midgut 6.0 family Lachnospiraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 family Lachnospiraceae root:Engineered:Biogas plant:Wet fermentation 4.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 30.0 +family Lachnospiraceae root:Engineered:Lab enrichment 1.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 31.0 family Lachnospiraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Lachnospiraceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Lachnospiraceae root:Host-associated:Birds:Digestive system:Ceca 10.0 +family Lachnospiraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Lachnospiraceae root:Host-associated:Human:Digestive system 35.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater 1.0 family Lachnospiraceae root:Environmental:Aquatic:Thermal springs 1.0 family Lachnospiraceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Lachnospiraceae root:Engineered:Solid waste:Composting 2.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 56.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 57.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 family Lachnospiraceae root:Host-associated:Arthropoda:Digestive system:Gut 3.0 family Lachnospiraceae root:Engineered:Lab enrichment:Defined media 1.0 family Lachnospiraceae root:Engineered:Food production 1.0 family Lachnospiraceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 -family Lachnospiraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Large intestine 14.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Large intestine 15.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Lachnospiraceae root:Environmental:Aquatic:Estuary 2.0 @@ -23587,13 +23974,12 @@ family Lachnospiraceae root:Engineered:Wastewater:Industrial wastewater 3.0 family Lachnospiraceae root:Engineered:Modeled 1.0 family Lachnospiraceae root:Host-associated:Insecta:Digestive system 1.0 family Lachnospiraceae root:Host-associated 5.0 -family Lachnospiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Lachnospiraceae root:Host-associated:Fish:Digestive system 1.0 family Lachnospiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 family Lachnospiraceae root:Engineered:Bioreactor:Continuous culture 1.0 family Lachnospiraceae root:Host-associated:Human:Reproductive system:Female 1.0 family Lachnospiraceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Lachnospiraceae root:Engineered:Wastewater:Water and sludge 4.0 +family Lachnospiraceae root:Engineered:Wastewater:Water and sludge 5.0 family Lachnospiraceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 family Lachnospiraceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Lachnospiraceae root:Environmental:Terrestrial 1.0 @@ -23602,7 +23988,6 @@ family Lachnospiraceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1 family Lachnospiraceae root:Host-associated:Insecta 3.0 family Lachnospiraceae root:Engineered:Built environment 3.0 family Lachnospiraceae root:Host-associated:Birds:Digestive system 6.0 -family Lachnospiraceae root:Engineered:Lab enrichment 1.0 family Lachnospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Lachnospiraceae root:Host-associated:Animal:Digestive system:Fecal 5.0 family Lachnospiraceae root:Engineered:Biogas plant 7.0 @@ -23610,14 +23995,15 @@ family Lachnospiraceae root:Host-associated:Reptile 2.0 family Lachnospiraceae root:Host-associated:Mammals:Respiratory system 4.0 family Lachnospiraceae root:Host-associated:Birds 4.0 family Lachnospiraceae root:Host-associated:Animal 1.0 -family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Midgut 3.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system 1.0 +family Lachnospiraceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 family Lachnospiraceae root:Host-associated:Mammals:Skin 2.0 family Lachnospiraceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Lachnospiraceae root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 family Lachnospiraceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +family Lachnospiraceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Lachnospiraceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Lachnospiraceae root:Host-associated:Human:Circulatory system:Blood 1.0 @@ -23627,14 +24013,15 @@ family Lachnospiraceae root:Engineered:Solid waste:Composting:Bioreactor 1.0 family Lachnospiraceae root:Host-associated:Mammals:Excretory system 1.0 family Lachnospiraceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Lachnospiraceae root:Host-associated:Mammals:Milk 1.0 +family Lachnospiraceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Lachnospiraceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 family Fusobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Fusobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 -family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral:Saliva 19.0 +family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral:Saliva 20.0 family Fusobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 family Fusobacteriaceae root:Environmental:Aquatic:Marine 3.0 family Fusobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 -family Fusobacteriaceae root:Host-associated:Mammals:Digestive system 1.0 +family Fusobacteriaceae root:Host-associated:Mammals:Digestive system 2.0 family Fusobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Fusobacteriaceae root:Host-associated:Human 3.0 family Fusobacteriaceae root:Host-associated:Plants 1.0 @@ -23644,6 +24031,7 @@ family Fusobacteriaceae root:Mixed 1.0 family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral 45.0 family Fusobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Fusobacteriaceae root:Environmental:Aquatic:Marine:Sediment 8.0 +family Fusobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Fusobacteriaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 family Fusobacteriaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -23658,11 +24046,12 @@ family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral:Subging family Fusobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Fusobacteriaceae root:Engineered:Food production 1.0 family Fusobacteriaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 +family Fusobacteriaceae root:Engineered:Food production:Fermented seafood 1.0 family Fusobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Fusobacteriaceae root:Host-associated:Animal:Digestive system 2.0 family Fusobacteriaceae root:Host-associated:Insecta:Digestive system 1.0 family Fusobacteriaceae root:Host-associated 1.0 -family Fusobacteriaceae root:Host-associated:Fish:Digestive system 1.0 +family Fusobacteriaceae root:Host-associated:Fish:Digestive system 2.0 family Fusobacteriaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Fusobacteriaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 family Fusobacteriaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 @@ -23685,13 +24074,14 @@ family Fusobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Dif family Fusobacteriaceae root:Host-associated:Mammals:Nervous system:Brain 1.0 family Fusobacteriaceae root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 family Fusobacteriaceae root:Host-associated:Mollusca:Digestive system:Glands 1.0 +family Fusobacteriaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Fusobacteriaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater:Sediment 5.0 -family Clostridiaceae root:Host-associated:Mammals:Digestive system:Fecal 17.0 +family Clostridiaceae root:Host-associated:Mammals:Digestive system:Fecal 19.0 family Clostridiaceae root:Host-associated:Birds:Digestive system:Fecal 5.0 family Clostridiaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -family Clostridiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 87.0 +family Clostridiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 94.0 family Clostridiaceae root:Environmental:Aquatic:Marine 6.0 family Clostridiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Clostridiaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -23699,14 +24089,14 @@ family Clostridiaceae root:Host-associated:Mammals:Digestive system 8.0 family Clostridiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 family Clostridiaceae root:Host-associated:Human 3.0 family Clostridiaceae root:Host-associated:Plants 4.0 -family Clostridiaceae root:Host-associated:Human:Digestive system:Large intestine 9.0 +family Clostridiaceae root:Host-associated:Human:Digestive system:Large intestine 10.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Agricultural 9.0 family Clostridiaceae root:Engineered:Bioreactor 28.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 family Clostridiaceae root:Engineered:Wastewater:Activated Sludge 12.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Permafrost 2.0 -family Clostridiaceae root:Mixed 2.0 +family Clostridiaceae root:Mixed 4.0 family Clostridiaceae root:Host-associated:Mammals 2.0 family Clostridiaceae root:Engineered:Food production:Fermented beverages 5.0 family Clostridiaceae root:Engineered:Wastewater 4.0 @@ -23714,17 +24104,20 @@ family Clostridiaceae root:Host-associated:Human:Reproductive system:Vagina 3.0 family Clostridiaceae root:Engineered:Food production:Dairy products 3.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 family Clostridiaceae root:Host-associated:Plants:Phylloplane 1.0 -family Clostridiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 +family Clostridiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 family Clostridiaceae root:Environmental:Terrestrial:Soil 22.0 family Clostridiaceae root:Environmental:Aquatic:Marine:Sediment 7.0 -family Clostridiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Clostridiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Clostridiaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Clostridiaceae root:Environmental:Aquatic:Sediment 3.0 family Clostridiaceae root:Environmental:Aquatic 1.0 family Clostridiaceae root:Engineered:Biogas plant:Wet fermentation 8.0 +family Clostridiaceae root:Engineered:Lab enrichment 4.0 family Clostridiaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Wetlands 4.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Clostridiaceae root:Host-associated:Birds:Digestive system:Ceca 5.0 +family Clostridiaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Clostridiaceae root:Host-associated:Human:Digestive system 12.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater 1.0 family Clostridiaceae root:Environmental:Aquatic:Thermal springs 2.0 @@ -23732,7 +24125,7 @@ family Clostridiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral re family Clostridiaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Clostridiaceae root:Engineered:Solid waste:Composting 6.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Desert 1.0 -family Clostridiaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 23.0 +family Clostridiaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 24.0 family Clostridiaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 family Clostridiaceae root:Host-associated:Arthropoda:Digestive system:Gut 3.0 family Clostridiaceae root:Engineered:Lab enrichment:Defined media 1.0 @@ -23741,9 +24134,8 @@ family Clostridiaceae root:Environmental:Aquatic:Marine:Oil-contaminated sedimen family Clostridiaceae root:Engineered:Food production 4.0 family Clostridiaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 4.0 family Clostridiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Clostridiaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Clostridiaceae root:Host-associated:Mammals:Digestive system:Large intestine 5.0 -family Clostridiaceae root:Engineered:Food production:Fermented seafood 1.0 +family Clostridiaceae root:Engineered:Food production:Fermented seafood 2.0 family Clostridiaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Clostridiaceae root:Host-associated:Animal:Digestive system 4.0 family Clostridiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -23751,7 +24143,6 @@ family Clostridiaceae root:Engineered:Wastewater:Industrial wastewater 3.0 family Clostridiaceae root:Engineered:Modeled 3.0 family Clostridiaceae root:Host-associated:Insecta:Digestive system 1.0 family Clostridiaceae root:Host-associated 2.0 -family Clostridiaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Clostridiaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Clostridiaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 family Clostridiaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 @@ -23765,7 +24156,6 @@ family Clostridiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-cont family Clostridiaceae root:Host-associated:Birds:Digestive system:Digestive tube 1.0 family Clostridiaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Clostridiaceae root:Host-associated:Birds:Digestive system 6.0 -family Clostridiaceae root:Engineered:Lab enrichment 4.0 family Clostridiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Clostridiaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 family Clostridiaceae root:Engineered:Solid waste:Landfill 1.0 @@ -23795,20 +24185,20 @@ family Clostridiaceae root:Engineered:Solid waste:Solid animal waste 1.0 family Clostridiaceae root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Sediment 6.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Fecal 67.0 +family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Sediment 7.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Fecal 69.0 family Ruminococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 family Ruminococcaceae root:Host-associated:Birds:Digestive system:Fecal 13.0 family Ruminococcaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -family Ruminococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 186.0 +family Ruminococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 197.0 family Ruminococcaceae root:Environmental:Aquatic:Marine 11.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system 33.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system 34.0 family Ruminococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 -family Ruminococcaceae root:Host-associated:Human 7.0 +family Ruminococcaceae root:Host-associated:Human 8.0 family Ruminococcaceae root:Host-associated:Plants 2.0 -family Ruminococcaceae root:Host-associated:Human:Digestive system:Large intestine 12.0 +family Ruminococcaceae root:Host-associated:Human:Digestive system:Large intestine 13.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil:Agricultural 5.0 family Ruminococcaceae root:Engineered:Bioreactor 37.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -23816,8 +24206,8 @@ family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 family Ruminococcaceae root:Engineered:Wastewater:Activated Sludge 46.0 family Ruminococcaceae root:Host-associated:Human:Skin 2.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Ruminococcaceae root:Mixed 3.0 -family Ruminococcaceae root:Host-associated:Mammals 7.0 +family Ruminococcaceae root:Mixed 5.0 +family Ruminococcaceae root:Host-associated:Mammals 8.0 family Ruminococcaceae root:Host-associated:Human:Digestive system:Intestine 3.0 family Ruminococcaceae root:Engineered:Food production:Fermented beverages 5.0 family Ruminococcaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 @@ -23830,32 +24220,35 @@ family Ruminococcaceae root:Environmental:Terrestrial:Soil:Contaminated 2.0 family Ruminococcaceae root:Host-associated:Plants:Phylloplane 1.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil:Silt 1.0 family Ruminococcaceae root:Host-associated:Plants:Rhizosphere 1.0 -family Ruminococcaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 +family Ruminococcaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil 16.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Sediment 12.0 -family Ruminococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Ruminococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Ruminococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 4.0 family Ruminococcaceae root:Environmental:Aquatic:Sediment 3.0 family Ruminococcaceae root:Environmental:Aquatic 3.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Midgut 6.0 family Ruminococcaceae root:Engineered:Biogas plant:Wet fermentation 6.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 32.0 +family Ruminococcaceae root:Engineered:Lab enrichment 2.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 33.0 family Ruminococcaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Ruminococcaceae root:Host-associated:Birds:Digestive system:Ceca 10.0 +family Ruminococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Ruminococcaceae root:Host-associated:Human:Digestive system 34.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater 2.0 family Ruminococcaceae root:Environmental:Aquatic:Thermal springs 1.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Ruminococcaceae root:Engineered:Solid waste:Composting 5.0 family Ruminococcaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 56.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 57.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 family Ruminococcaceae root:Host-associated:Arthropoda:Digestive system:Gut 3.0 family Ruminococcaceae root:Engineered:Lab enrichment:Defined media 6.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Ruminococcaceae root:Engineered:Food production 1.0 family Ruminococcaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -family Ruminococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 13.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 14.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Ruminococcaceae root:Environmental:Aquatic:Estuary 1.0 family Ruminococcaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -23864,14 +24257,14 @@ family Ruminococcaceae root:Engineered:Wastewater:Industrial wastewater 5.0 family Ruminococcaceae root:Engineered:Modeled 1.0 family Ruminococcaceae root:Host-associated:Insecta:Digestive system 1.0 family Ruminococcaceae root:Host-associated 5.0 -family Ruminococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Ruminococcaceae root:Host-associated:Fish:Digestive system 2.0 family Ruminococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 5.0 family Ruminococcaceae root:Engineered:Bioreactor:Continuous culture 3.0 family Ruminococcaceae root:Host-associated:Human:Reproductive system:Female 1.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Ruminococcaceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 -family Ruminococcaceae root:Engineered:Wastewater:Water and sludge 8.0 +family Ruminococcaceae root:Engineered:Wastewater:Water and sludge 9.0 +family Ruminococcaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Ruminococcaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 family Ruminococcaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Ruminococcaceae root:Environmental:Terrestrial 1.0 @@ -23880,7 +24273,6 @@ family Ruminococcaceae root:Host-associated:Birds:Digestive system:Digestive tub family Ruminococcaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Ruminococcaceae root:Engineered:Built environment 4.0 family Ruminococcaceae root:Host-associated:Birds:Digestive system 6.0 -family Ruminococcaceae root:Engineered:Lab enrichment 2.0 family Ruminococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Ruminococcaceae root:Host-associated:Animal:Digestive system:Fecal 4.0 family Ruminococcaceae root:Engineered:Biogas plant 12.0 @@ -23889,7 +24281,6 @@ family Ruminococcaceae root:Host-associated:Reptile 2.0 family Ruminococcaceae root:Host-associated:Mammals:Respiratory system 4.0 family Ruminococcaceae root:Host-associated:Birds 4.0 family Ruminococcaceae root:Host-associated:Animal 1.0 -family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Midgut 3.0 family Ruminococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Ruminococcaceae root:Host-associated:Human:Respiratory system 1.0 family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 @@ -23897,6 +24288,7 @@ family Ruminococcaceae root:Engineered:Biotransformation 1.0 family Ruminococcaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 family Ruminococcaceae root:Host-associated:Mammals:Skin 2.0 family Ruminococcaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 +family Ruminococcaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Ruminococcaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Ruminococcaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Ruminococcaceae root:Host-associated:Human:Circulatory system 1.0 @@ -23906,16 +24298,17 @@ family Ruminococcaceae root:Host-associated:Mammals:Excretory system 1.0 family Ruminococcaceae root:Host-associated:Algae:Brown Algae 1.0 family Ruminococcaceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Ruminococcaceae root:Host-associated:Mammals:Milk 1.0 +family Ruminococcaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Ruminococcaceae root:Engineered:Solid waste:Solid animal waste 1.0 family Lactobacillaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Fecal 34.0 family Lactobacillaceae root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 family Lactobacillaceae root:Host-associated:Birds:Digestive system:Fecal 10.0 -family Lactobacillaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 31.0 +family Lactobacillaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 32.0 family Lactobacillaceae root:Environmental:Aquatic:Marine 2.0 family Lactobacillaceae root:Host-associated:Mammals:Digestive system 16.0 family Lactobacillaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -family Lactobacillaceae root:Host-associated:Human 4.0 +family Lactobacillaceae root:Host-associated:Human 5.0 family Lactobacillaceae root:Host-associated:Plants 2.0 family Lactobacillaceae root:Engineered:Food production:Silage fermentation 1.0 family Lactobacillaceae root:Host-associated:Human:Digestive system:Large intestine 2.0 @@ -23926,19 +24319,22 @@ family Lactobacillaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Lactobacillaceae root:Host-associated:Human:Skin 8.0 family Lactobacillaceae root:Mixed 2.0 family Lactobacillaceae root:Host-associated:Mammals 5.0 -family Lactobacillaceae root:Engineered:Food production:Fermented beverages 10.0 +family Lactobacillaceae root:Engineered:Food production:Fermented beverages 11.0 family Lactobacillaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Lactobacillaceae root:Engineered:Wastewater 1.0 family Lactobacillaceae root:Host-associated:Human:Reproductive system:Vagina 16.0 family Lactobacillaceae root:Host-associated:Human:Digestive system:Oral 7.0 -family Lactobacillaceae root:Engineered:Food production:Dairy products 21.0 +family Lactobacillaceae root:Engineered:Food production:Dairy products 22.0 family Lactobacillaceae root:Environmental:Terrestrial:Soil 6.0 family Lactobacillaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Lactobacillaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Lactobacillaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 +family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Lactobacillaceae root:Engineered:Biogas plant:Wet fermentation 2.0 family Lactobacillaceae root:Host-associated:Porifera 1.0 family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 family Lactobacillaceae root:Host-associated:Birds:Digestive system:Ceca 8.0 +family Lactobacillaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Lactobacillaceae root:Host-associated:Human:Digestive system 4.0 family Lactobacillaceae root:Environmental:Aquatic:Freshwater 1.0 family Lactobacillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -23949,14 +24345,13 @@ family Lactobacillaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Lactobacillaceae root:Engineered:Food production 9.0 family Lactobacillaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 8.0 family Lactobacillaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Lactobacillaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Large intestine 11.0 +family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Large intestine 12.0 family Lactobacillaceae root:Engineered:Food production:Fermented seafood 2.0 family Lactobacillaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Lactobacillaceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 family Lactobacillaceae root:Host-associated:Animal:Digestive system 4.0 family Lactobacillaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -family Lactobacillaceae root:Host-associated:Insecta:Digestive system 1.0 +family Lactobacillaceae root:Host-associated:Insecta:Digestive system 2.0 family Lactobacillaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 family Lactobacillaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 family Lactobacillaceae root:Host-associated:Fish:Digestive system:Foregut 4.0 @@ -23980,11 +24375,11 @@ family Lactobacillaceae root:Host-associated:Birds 3.0 family Lactobacillaceae root:Host-associated:Animal 1.0 family Lactobacillaceae root:Engineered 2.0 family Lactobacillaceae root:Engineered:Industrial production 1.0 -family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Lactobacillaceae root:Environmental:Air 1.0 family Lactobacillaceae root:Host-associated:Arthropoda 1.0 family Lactobacillaceae root:Host-associated:Human:Respiratory system 1.0 family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 +family Lactobacillaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Lactobacillaceae root:Host-associated:Birds:Respiratory system 2.0 family Lactobacillaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Lactobacillaceae root:Host-associated:Human:Circulatory system 2.0 @@ -23996,25 +24391,28 @@ family Lactobacillaceae root:Engineered:Solid waste:Solid animal waste 1.0 genus Alistipes root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Alistipes root:Host-associated:Mammals:Digestive system:Fecal 20.0 genus Alistipes root:Host-associated:Birds:Digestive system:Fecal 3.0 -genus Alistipes root:Host-associated:Human:Digestive system:Large intestine:Fecal 82.0 +genus Alistipes root:Host-associated:Human:Digestive system:Large intestine:Fecal 90.0 genus Alistipes root:Environmental:Aquatic:Marine 1.0 -genus Alistipes root:Host-associated:Mammals:Digestive system 12.0 +genus Alistipes root:Host-associated:Mammals:Digestive system 13.0 genus Alistipes root:Host-associated:Human 1.0 -genus Alistipes root:Host-associated:Human:Digestive system:Large intestine 8.0 +genus Alistipes root:Host-associated:Human:Digestive system:Large intestine 9.0 genus Alistipes root:Engineered:Wastewater:Activated Sludge 1.0 genus Alistipes root:Host-associated:Human:Skin 1.0 -genus Alistipes root:Mixed 2.0 +genus Alistipes root:Mixed 3.0 genus Alistipes root:Host-associated:Mammals 4.0 genus Alistipes root:Host-associated:Human:Digestive system:Intestine 3.0 genus Alistipes root:Engineered:Wastewater 2.0 genus Alistipes root:Environmental:Terrestrial:Soil 1.0 genus Alistipes root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Alistipes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Alistipes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Alistipes root:Environmental:Aquatic:Sediment 1.0 +genus Alistipes root:Host-associated:Mammals:Digestive system:Midgut 3.0 genus Alistipes root:Host-associated:Birds:Digestive system:Ceca 5.0 genus Alistipes root:Host-associated:Human:Digestive system 20.0 genus Alistipes root:Environmental:Aquatic:Marine:Coastal 1.0 genus Alistipes root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -genus Alistipes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 15.0 +genus Alistipes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 16.0 genus Alistipes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 genus Alistipes root:Host-associated:Mammals:Digestive system:Large intestine 5.0 genus Alistipes root:Host-associated:Animal:Digestive system 3.0 @@ -24032,11 +24430,12 @@ genus Alistipes root:Host-associated:Reptile 1.0 genus Alistipes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Alistipes root:Host-associated:Mammals:Respiratory system 4.0 genus Alistipes root:Host-associated:Birds 2.0 -genus Alistipes root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Alistipes root:Host-associated:Human:Respiratory system 1.0 genus Alistipes root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 genus Alistipes root:Host-associated:Mammals:Skin 1.0 +genus Alistipes root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Alistipes root:Host-associated:Human:Circulatory system 1.0 +genus Alistipes root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Turicibacter root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Turicibacter root:Host-associated:Mammals:Digestive system:Fecal 20.0 genus Turicibacter root:Host-associated:Birds:Digestive system:Fecal 4.0 @@ -24056,12 +24455,16 @@ genus Turicibacter root:Host-associated:Plants:Rhizosphere 1.0 genus Turicibacter root:Environmental:Terrestrial:Soil 3.0 genus Turicibacter root:Environmental:Aquatic:Marine:Sediment 2.0 genus Turicibacter root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Turicibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 genus Turicibacter root:Environmental:Aquatic:Sediment 1.0 genus Turicibacter root:Environmental:Aquatic 2.0 +genus Turicibacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Turicibacter root:Engineered:Biogas plant:Wet fermentation 1.0 +genus Turicibacter root:Engineered:Lab enrichment 1.0 genus Turicibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 genus Turicibacter root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Turicibacter root:Host-associated:Birds:Digestive system:Ceca 3.0 +genus Turicibacter root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus Turicibacter root:Host-associated:Human:Digestive system 3.0 genus Turicibacter root:Engineered:Solid waste:Composting 4.0 genus Turicibacter root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -24069,13 +24472,11 @@ genus Turicibacter root:Host-associated:Mammals:Digestive system:Large intestine genus Turicibacter root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Turicibacter root:Engineered:Food production 2.0 genus Turicibacter root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 -genus Turicibacter root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus Turicibacter root:Host-associated:Mammals:Digestive system:Large intestine 6.0 genus Turicibacter root:Host-associated:Animal:Digestive system 1.0 genus Turicibacter root:Engineered:Modeled 1.0 genus Turicibacter root:Host-associated:Insecta:Digestive system 1.0 genus Turicibacter root:Host-associated 2.0 -genus Turicibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Turicibacter root:Environmental:Terrestrial:Soil:Sand 1.0 genus Turicibacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Turicibacter root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 @@ -24084,13 +24485,11 @@ genus Turicibacter root:Host-associated:Human:Digestive system:Large intestine:S genus Turicibacter root:Host-associated:Birds:Digestive system:Digestive tube 1.0 genus Turicibacter root:Host-associated:Insecta 1.0 genus Turicibacter root:Host-associated:Birds:Digestive system 1.0 -genus Turicibacter root:Engineered:Lab enrichment 1.0 genus Turicibacter root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Turicibacter root:Engineered:Biogas plant 3.0 genus Turicibacter root:Host-associated:Mammals:Respiratory system 3.0 genus Turicibacter root:Host-associated:Birds 2.0 genus Turicibacter root:Engineered 1.0 -genus Turicibacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Turicibacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Turicibacter root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 genus Turicibacter root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -24100,7 +24499,7 @@ genus Turicibacter root:Host-associated:Mammals:Excretory system 1.0 genus Turicibacter root:Host-associated:Mammals:Milk 1.0 genus Novosphingobium root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Novosphingobium root:Environmental:Aquatic:Freshwater:Sediment 1.0 -genus Novosphingobium root:Environmental:Aquatic:Marine 2.0 +genus Novosphingobium root:Environmental:Aquatic:Marine 3.0 genus Novosphingobium root:Environmental:Aquatic:Lentic:Brackish 5.0 genus Novosphingobium root:Engineered:Bioreactor 1.0 genus Novosphingobium root:Engineered:Wastewater:Activated Sludge 1.0 @@ -24115,7 +24514,7 @@ genus Novosphingobium root:Environmental:Aquatic:Freshwater:Drinking water 2.0 genus Novosphingobium root:Environmental:Terrestrial:Soil:Desert 1.0 genus Novosphingobium root:Host-associated:Plants:Root 1.0 genus Novosphingobium root:Engineered:Bioreactor:Continuous culture 1.0 -genus Novosphingobium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Novosphingobium root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Novosphingobium root:Host-associated:Insecta 1.0 genus Novosphingobium root:Host-associated:Algae 1.0 genus Novosphingobium root:Host-associated:Arthropoda 1.0 @@ -24128,6 +24527,7 @@ genus WCHB1-05 root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus WCHB1-05 root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus WCHB1-05 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus WCHB1-05 root:Environmental:Terrestrial:Soil 2.0 +genus WCHB1-05 root:Engineered:Lab enrichment 1.0 genus WCHB1-05 root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus WCHB1-05 root:Environmental:Aquatic:Freshwater 1.0 genus WCHB1-05 root:Engineered:Lab enrichment:Defined media 1.0 @@ -24135,13 +24535,13 @@ genus WCHB1-05 root:Engineered:Wastewater:Industrial wastewater 1.0 genus WCHB1-05 root:Environmental:Terrestrial:Soil:Mine 1.0 genus WCHB1-05 root:Engineered:Bioreactor:Continuous culture 1.0 genus WCHB1-05 root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -genus WCHB1-05 root:Engineered:Lab enrichment 1.0 genus WCHB1-05 root:Engineered 2.0 genus Fusobacterium root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Fusobacterium root:Host-associated:Mammals:Digestive system:Fecal 9.0 -genus Fusobacterium root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 +genus Fusobacterium root:Host-associated:Human:Digestive system:Oral:Saliva 24.0 genus Fusobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 -genus Fusobacterium root:Host-associated:Mammals:Digestive system 3.0 +genus Fusobacterium root:Environmental:Aquatic:Marine 1.0 +genus Fusobacterium root:Host-associated:Mammals:Digestive system 4.0 genus Fusobacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Fusobacterium root:Host-associated:Human 3.0 genus Fusobacterium root:Host-associated:Plants 2.0 @@ -24155,6 +24555,7 @@ genus Fusobacterium root:Host-associated:Plants:Rhizosphere 2.0 genus Fusobacterium root:Environmental:Terrestrial:Soil 7.0 genus Fusobacterium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Fusobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Fusobacterium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Fusobacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Fusobacterium root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Fusobacterium root:Host-associated:Human:Digestive system 6.0 @@ -24188,23 +24589,24 @@ genus Fusobacterium root:Host-associated:Human:Respiratory system:Pulmonary syst genus Fusobacterium root:Host-associated:Human:Circulatory system 1.0 genus Fusobacterium root:Host-associated:Mammals:Nervous system:Brain 1.0 genus Fusobacterium root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 +genus Fusobacterium root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Fusobacterium root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 genus Prevotella root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Prevotella root:Host-associated:Mammals:Digestive system:Fecal 15.0 -genus Prevotella root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 +genus Prevotella root:Host-associated:Mammals:Digestive system:Fecal 16.0 +genus Prevotella root:Host-associated:Human:Digestive system:Oral:Saliva 24.0 genus Prevotella root:Host-associated:Birds:Digestive system:Fecal 2.0 genus Prevotella root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -genus Prevotella root:Host-associated:Human:Digestive system:Large intestine:Fecal 89.0 -genus Prevotella root:Environmental:Aquatic:Marine 2.0 +genus Prevotella root:Host-associated:Human:Digestive system:Large intestine:Fecal 92.0 +genus Prevotella root:Environmental:Aquatic:Marine 3.0 genus Prevotella root:Host-associated:Mammals:Digestive system 6.0 genus Prevotella root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Prevotella root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Prevotella root:Host-associated:Human 11.0 +genus Prevotella root:Host-associated:Human 12.0 genus Prevotella root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Prevotella root:Engineered:Bioreactor 2.0 genus Prevotella root:Engineered:Wastewater:Activated Sludge 2.0 genus Prevotella root:Host-associated:Human:Skin 4.0 -genus Prevotella root:Mixed 1.0 +genus Prevotella root:Mixed 3.0 genus Prevotella root:Host-associated:Human:Digestive system:Intestine 2.0 genus Prevotella root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 genus Prevotella root:Engineered:Wastewater 6.0 @@ -24217,7 +24619,9 @@ genus Prevotella root:Host-associated:Plants:Rhizosphere 1.0 genus Prevotella root:Environmental:Terrestrial:Soil 3.0 genus Prevotella root:Environmental:Aquatic:Marine:Sediment 2.0 genus Prevotella root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Prevotella root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 genus Prevotella root:Environmental:Aquatic 1.0 +genus Prevotella root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Prevotella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 24.0 genus Prevotella root:Environmental:Terrestrial:Soil:Grasslands 2.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 @@ -24227,9 +24631,9 @@ genus Prevotella root:Environmental:Aquatic:Freshwater 1.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 genus Prevotella root:Engineered:Solid waste:Composting 1.0 genus Prevotella root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 -genus Prevotella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 27.0 +genus Prevotella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 28.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 12.0 -genus Prevotella root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +genus Prevotella root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 genus Prevotella root:Engineered:Food production 1.0 genus Prevotella root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 genus Prevotella root:Host-associated:Mammals:Digestive system:Large intestine 4.0 @@ -24238,39 +24642,40 @@ genus Prevotella root:Host-associated:Animal:Digestive system 1.0 genus Prevotella root:Engineered:Wastewater:Industrial wastewater 2.0 genus Prevotella root:Engineered:Modeled 1.0 genus Prevotella root:Host-associated 2.0 -genus Prevotella root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 genus Prevotella root:Host-associated:Fish:Digestive system 1.0 genus Prevotella root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 3.0 genus Prevotella root:Host-associated:Human:Reproductive system:Female 2.0 genus Prevotella root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Prevotella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Prevotella root:Engineered:Wastewater:Water and sludge 1.0 +genus Prevotella root:Engineered:Wastewater:Water and sludge 3.0 genus Prevotella root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 genus Prevotella root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 +genus Prevotella root:Host-associated:Insecta 1.0 genus Prevotella root:Engineered:Built environment 1.0 genus Prevotella root:Host-associated:Birds:Digestive system 2.0 genus Prevotella root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Prevotella root:Engineered:Food production:Fermented vegetables 2.0 genus Prevotella root:Host-associated:Birds 2.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 -genus Prevotella root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Prevotella root:Host-associated:Human:Digestive system:Oral:Throat 1.0 genus Prevotella root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 genus Prevotella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Prevotella root:Host-associated:Human:Respiratory system 3.0 +genus Prevotella root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Prevotella root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 genus Prevotella root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 3.0 genus Prevotella root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 genus Prevotella root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 genus Prevotella root:Host-associated:Mammals:Excretory system 1.0 genus Prevotella root:Host-associated:Mammals:Milk 1.0 +genus Prevotella root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Prevotella root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Sediment 6.0 -genus Clostridium root:Host-associated:Mammals:Digestive system:Fecal 11.0 +genus Clostridium root:Host-associated:Mammals:Digestive system:Fecal 13.0 genus Clostridium root:Host-associated:Birds:Digestive system:Fecal 1.0 -genus Clostridium root:Host-associated:Human:Digestive system:Large intestine:Fecal 35.0 +genus Clostridium root:Host-associated:Human:Digestive system:Large intestine:Fecal 38.0 genus Clostridium root:Host-associated:Mammals:Digestive system 6.0 genus Clostridium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Clostridium root:Host-associated:Human 2.0 @@ -24283,7 +24688,7 @@ genus Clostridium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 genus Clostridium root:Engineered:Wastewater:Activated Sludge 4.0 genus Clostridium root:Host-associated:Human:Skin 1.0 genus Clostridium root:Environmental:Terrestrial:Soil:Permafrost 3.0 -genus Clostridium root:Mixed 2.0 +genus Clostridium root:Mixed 4.0 genus Clostridium root:Host-associated:Mammals 1.0 genus Clostridium root:Engineered:Food production:Fermented beverages 2.0 genus Clostridium root:Engineered:Wastewater 2.0 @@ -24292,15 +24697,21 @@ genus Clostridium root:Engineered:Food production:Dairy products 3.0 genus Clostridium root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Clostridium root:Host-associated:Plants:Phylloplane 1.0 genus Clostridium root:Host-associated:Plants:Rhizosphere 1.0 +genus Clostridium root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Clostridium root:Environmental:Terrestrial:Soil 16.0 genus Clostridium root:Environmental:Aquatic:Marine:Sediment 4.0 +genus Clostridium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Clostridium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Clostridium root:Environmental:Aquatic:Sediment 1.0 +genus Clostridium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Clostridium root:Engineered:Biogas plant:Wet fermentation 5.0 +genus Clostridium root:Engineered:Lab enrichment 1.0 genus Clostridium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Clostridium root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Clostridium root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Clostridium root:Host-associated:Birds:Digestive system:Ceca 4.0 +genus Clostridium root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Clostridium root:Host-associated:Human:Digestive system 6.0 genus Clostridium root:Environmental:Aquatic:Marine:Coastal 1.0 genus Clostridium root:Engineered:Solid waste:Composting 5.0 @@ -24310,7 +24721,6 @@ genus Clostridium root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Clostridium root:Engineered:Food production 2.0 genus Clostridium root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Clostridium root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Clostridium root:Host-associated:Mammals:Digestive system:Large intestine 3.0 genus Clostridium root:Engineered:Food production:Fermented seafood 1.0 genus Clostridium root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 @@ -24319,16 +24729,14 @@ genus Clostridium root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Clostridium root:Engineered:Wastewater:Industrial wastewater 2.0 genus Clostridium root:Engineered:Modeled 1.0 genus Clostridium root:Host-associated 1.0 -genus Clostridium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 genus Clostridium root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 genus Clostridium root:Engineered:Bioreactor:Continuous culture 1.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Clostridium root:Engineered:Wastewater:Water and sludge 2.0 +genus Clostridium root:Engineered:Wastewater:Water and sludge 3.0 genus Clostridium root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 genus Clostridium root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Clostridium root:Host-associated:Birds:Digestive system:Digestive tube 1.0 genus Clostridium root:Host-associated:Birds:Digestive system 3.0 -genus Clostridium root:Engineered:Lab enrichment 1.0 genus Clostridium root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Clostridium root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Clostridium root:Host-associated:Animal:Digestive system:Fecal 2.0 @@ -24350,51 +24758,52 @@ genus Bifidobacterium root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Fecal 14.0 genus Bifidobacterium root:Host-associated:Birds:Digestive system:Fecal 1.0 genus Bifidobacterium root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -genus Bifidobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 116.0 +genus Bifidobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 125.0 genus Bifidobacterium root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -genus Bifidobacterium root:Host-associated:Mammals:Digestive system 3.0 +genus Bifidobacterium root:Host-associated:Mammals:Digestive system 4.0 genus Bifidobacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Bifidobacterium root:Host-associated:Human 4.0 -genus Bifidobacterium root:Host-associated:Human:Digestive system:Large intestine 10.0 +genus Bifidobacterium root:Host-associated:Human:Digestive system:Large intestine 11.0 genus Bifidobacterium root:Engineered:Bioreactor 3.0 genus Bifidobacterium root:Engineered:Wastewater:Activated Sludge 8.0 -genus Bifidobacterium root:Mixed 1.0 +genus Bifidobacterium root:Mixed 2.0 genus Bifidobacterium root:Host-associated:Mammals 1.0 -genus Bifidobacterium root:Host-associated:Human:Digestive system:Intestine 2.0 +genus Bifidobacterium root:Host-associated:Human:Digestive system:Intestine 3.0 genus Bifidobacterium root:Engineered:Wastewater 5.0 genus Bifidobacterium root:Host-associated:Human:Reproductive system:Vagina 5.0 genus Bifidobacterium root:Host-associated:Human:Digestive system:Oral 1.0 -genus Bifidobacterium root:Engineered:Food production:Dairy products 2.0 +genus Bifidobacterium root:Engineered:Food production:Dairy products 3.0 genus Bifidobacterium root:Host-associated:Plants:Rhizosphere 2.0 genus Bifidobacterium root:Environmental:Terrestrial:Soil 3.0 genus Bifidobacterium root:Environmental:Aquatic:Marine:Sediment 3.0 -genus Bifidobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Bifidobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Bifidobacterium root:Environmental:Aquatic:Sediment 1.0 +genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Bifidobacterium root:Engineered:Biogas plant:Wet fermentation 2.0 +genus Bifidobacterium root:Engineered:Lab enrichment 1.0 genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Bifidobacterium root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Bifidobacterium root:Host-associated:Human:Digestive system 20.0 genus Bifidobacterium root:Environmental:Aquatic:Freshwater 1.0 genus Bifidobacterium root:Environmental:Aquatic:Marine:Coastal 1.0 genus Bifidobacterium root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 +genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 13.0 genus Bifidobacterium root:Engineered:Food production 1.0 genus Bifidobacterium root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Large intestine 4.0 +genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Large intestine 5.0 genus Bifidobacterium root:Host-associated:Animal:Digestive system 2.0 genus Bifidobacterium root:Engineered:Wastewater:Industrial wastewater 1.0 genus Bifidobacterium root:Host-associated:Insecta:Digestive system 1.0 genus Bifidobacterium root:Host-associated 1.0 genus Bifidobacterium root:Host-associated:Human:Reproductive system:Female 1.0 genus Bifidobacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Bifidobacterium root:Engineered:Wastewater:Water and sludge 1.0 +genus Bifidobacterium root:Engineered:Wastewater:Water and sludge 2.0 genus Bifidobacterium root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 genus Bifidobacterium root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 genus Bifidobacterium root:Environmental:Terrestrial 1.0 genus Bifidobacterium root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 genus Bifidobacterium root:Host-associated:Insecta 1.0 genus Bifidobacterium root:Host-associated:Birds:Digestive system 2.0 -genus Bifidobacterium root:Engineered:Lab enrichment 1.0 genus Bifidobacterium root:Host-associated:Animal:Digestive system:Fecal 2.0 genus Bifidobacterium root:Engineered:Biogas plant 2.0 genus Bifidobacterium root:Engineered:Food production:Fermented vegetables 1.0 @@ -24402,7 +24811,6 @@ genus Bifidobacterium root:Host-associated:Mammals:Respiratory system 4.0 genus Bifidobacterium root:Host-associated:Birds 1.0 genus Bifidobacterium root:Engineered 1.0 genus Bifidobacterium root:Environmental:Aquatic:Aquaculture 1.0 -genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Bifidobacterium root:Host-associated:Human:Respiratory system 1.0 genus Bifidobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 genus Bifidobacterium root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 @@ -24423,9 +24831,9 @@ species Turicibacter luteciae root:Engineered:Food production:Dairy products 1.0 species Turicibacter luteciae root:Environmental:Terrestrial:Soil 1.0 species Turicibacter luteciae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 species Turicibacter luteciae root:Host-associated:Birds:Digestive system:Ceca 1.0 +species Turicibacter luteciae root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Turicibacter luteciae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 species Turicibacter luteciae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Turicibacter luteciae root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Turicibacter luteciae root:Host-associated 1.0 species Turicibacter luteciae root:Engineered:Bioreactor:Continuous culture 1.0 species Turicibacter luteciae root:Engineered:Wastewater:Water and sludge 1.0 @@ -24459,29 +24867,29 @@ species Fusobacterium somerae root:Environmental:Aquatic:Freshwater:Groundwater: species Fusobacterium somerae root:Host-associated:Mammals:Nervous system:Brain 1.0 species Fusobacterium somerae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 species Prevotella copri root:Environmental:Aquatic:Freshwater:Lake 1.0 -species Prevotella copri root:Host-associated:Mammals:Digestive system:Fecal 9.0 -species Prevotella copri root:Host-associated:Human:Digestive system:Large intestine:Fecal 61.0 +species Prevotella copri root:Host-associated:Mammals:Digestive system:Fecal 10.0 +species Prevotella copri root:Host-associated:Human:Digestive system:Large intestine:Fecal 65.0 species Prevotella copri root:Host-associated:Mammals:Digestive system 3.0 species Prevotella copri root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Prevotella copri root:Host-associated:Human:Digestive system:Large intestine 3.0 -species Prevotella copri root:Mixed 1.0 +species Prevotella copri root:Mixed 2.0 species Prevotella copri root:Host-associated:Human:Digestive system:Intestine 2.0 species Prevotella copri root:Engineered:Wastewater 4.0 species Prevotella copri root:Engineered:Food production:Dairy products 2.0 species Prevotella copri root:Host-associated:Plants:Rhizosphere 1.0 species Prevotella copri root:Environmental:Terrestrial:Soil 2.0 species Prevotella copri root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Prevotella copri root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Prevotella copri root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella copri root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Prevotella copri root:Host-associated:Human:Digestive system 8.0 species Prevotella copri root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -species Prevotella copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 +species Prevotella copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 13.0 species Prevotella copri root:Engineered:Modeled 1.0 -species Prevotella copri root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Prevotella copri root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Prevotella copri root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Prevotella copri root:Engineered:Wastewater:Water and sludge 1.0 +species Prevotella copri root:Engineered:Wastewater:Water and sludge 2.0 species Prevotella copri root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Prevotella copri root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella copri root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species Prevotella copri root:Host-associated:Mammals:Excretory system 1.0 species Prevotella copri root:Host-associated:Mammals:Milk 1.0 @@ -24506,9 +24914,9 @@ phylum SAR406 root:Engineered:Food production:Dairy products 1.0 phylum SAR406 root:Environmental:Terrestrial:Soil 1.0 phylum SAR406 root:Environmental:Aquatic 1.0 phylum SAR406 root:Host-associated:Porifera 1.0 +phylum SAR406 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum SAR406 root:Environmental:Aquatic:Marine:Coastal 4.0 phylum SAR406 root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 -phylum SAR406 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum SAR406 root:Environmental:Aquatic:Estuary 1.0 phylum SAR406 root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 phylum SAR406 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 @@ -24526,8 +24934,8 @@ class AB16 root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 class AB16 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class AB16 root:Engineered:Food production:Dairy products 1.0 class AB16 root:Host-associated:Porifera 1.0 -class AB16 root:Environmental:Aquatic:Marine:Coastal 3.0 class AB16 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +class AB16 root:Environmental:Aquatic:Marine:Coastal 3.0 class AB16 root:Environmental:Aquatic:Estuary 1.0 class AB16 root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 class AB16 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 @@ -24559,8 +24967,8 @@ order Sva0853 root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow order Arctic96B-7 root:Environmental:Aquatic:Freshwater:Lake 1.0 order Arctic96B-7 root:Environmental:Aquatic:Marine 9.0 order Arctic96B-7 root:Environmental:Aquatic:Marine:Oceanic 2.0 -order Arctic96B-7 root:Environmental:Aquatic:Marine:Coastal 2.0 order Arctic96B-7 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Arctic96B-7 root:Environmental:Aquatic:Marine:Coastal 2.0 order Arctic96B-7 root:Environmental:Aquatic:Estuary 1.0 order Arctic96B-7 root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 order Arctic96B-7 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -24574,18 +24982,18 @@ family SAR324 root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow family A714017 root:Environmental:Aquatic:Freshwater:Lake 1.0 family A714017 root:Environmental:Aquatic:Marine 9.0 family A714017 root:Environmental:Aquatic:Marine:Oceanic 2.0 -family A714017 root:Environmental:Aquatic:Marine:Coastal 1.0 family A714017 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family A714017 root:Environmental:Aquatic:Marine:Coastal 1.0 family A714017 root:Environmental:Aquatic:Estuary 1.0 family A714017 root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 family A714017 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family A714017 root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 family Alteromonadaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Alteromonadaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -family Alteromonadaceae root:Environmental:Aquatic:Marine 152.0 +family Alteromonadaceae root:Environmental:Aquatic:Marine 168.0 family Alteromonadaceae root:Host-associated:Fish 1.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 -family Alteromonadaceae root:Environmental:Aquatic:Marine:Oceanic 43.0 +family Alteromonadaceae root:Environmental:Aquatic:Marine:Oceanic 44.0 family Alteromonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Alteromonadaceae root:Environmental:Aquatic:Lentic:Brackish 2.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -24593,6 +25001,7 @@ family Alteromonadaceae root:Host-associated:Plants 2.0 family Alteromonadaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 family Alteromonadaceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 family Alteromonadaceae root:Engineered:Bioreactor 1.0 +family Alteromonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 family Alteromonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Alteromonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 family Alteromonadaceae root:Mixed 1.0 @@ -24600,10 +25009,10 @@ family Alteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuar family Alteromonadaceae root:Engineered:Food production:Dairy products 1.0 family Alteromonadaceae root:Host-associated:Plants:Phylloplane 1.0 family Alteromonadaceae root:Host-associated:Plants:Rhizosphere 4.0 -family Alteromonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 +family Alteromonadaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 family Alteromonadaceae root:Environmental:Terrestrial:Soil 10.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Sediment 14.0 -family Alteromonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Alteromonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 family Alteromonadaceae root:Environmental:Aquatic:Sediment 1.0 family Alteromonadaceae root:Environmental:Aquatic 3.0 family Alteromonadaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 @@ -24629,9 +25038,10 @@ family Alteromonadaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminat family Alteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 family Alteromonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 -family Alteromonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +family Alteromonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Pelagic 6.0 family Alteromonadaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Alteromonadaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Alteromonadaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Alteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 @@ -24674,16 +25084,17 @@ genus CandidatusPortiera root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus CandidatusPortiera root:Host-associated:Fish:Skin 1.0 genus CandidatusPortiera root:Engineered:Bioremediation 1.0 genus Nitrospina root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Nitrospina root:Environmental:Aquatic:Marine 66.0 +genus Nitrospina root:Environmental:Aquatic:Marine 68.0 genus Nitrospina root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 genus Nitrospina root:Environmental:Aquatic:Marine:Oceanic 23.0 genus Nitrospina root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Nitrospina root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Nitrospina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +genus Nitrospina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 genus Nitrospina root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Nitrospina root:Environmental:Terrestrial:Soil 1.0 -genus Nitrospina root:Environmental:Aquatic:Marine:Sediment 17.0 +genus Nitrospina root:Environmental:Aquatic:Marine:Sediment 18.0 genus Nitrospina root:Host-associated:Porifera 2.0 +genus Nitrospina root:Engineered:Lab enrichment 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Coastal 4.0 genus Nitrospina root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 @@ -24691,16 +25102,16 @@ genus Nitrospina root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 genus Nitrospina root:Environmental:Aquatic:Estuary 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 -genus Nitrospina root:Environmental:Aquatic:Marine:Marginal Sea 3.0 +genus Nitrospina root:Environmental:Aquatic:Marine:Marginal Sea 4.0 genus Nitrospina root:Environmental:Aquatic:Marine:Pelagic 2.0 -genus Nitrospina root:Engineered:Lab enrichment 1.0 +genus Nitrospina root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Nitrospina root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 genus Nitrospina root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 genus Nitrospina root 1.0 genus Sphingobium root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Sphingobium root:Environmental:Aquatic:Marine 11.0 +genus Sphingobium root:Environmental:Aquatic:Marine 12.0 genus Sphingobium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Sphingobium root:Environmental:Terrestrial:Geologic 1.0 genus Sphingobium root:Host-associated:Plants 4.0 @@ -24711,12 +25122,12 @@ genus Sphingobium root:Engineered:Food production:Fermented beverages 1.0 genus Sphingobium root:Environmental:Terrestrial:Soil 4.0 genus Sphingobium root:Environmental:Aquatic:Marine:Sediment 2.0 genus Sphingobium root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Sphingobium root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Sphingobium root:Environmental:Aquatic:Thermal springs 1.0 genus Sphingobium root:Environmental:Terrestrial:Soil:Desert 1.0 genus Sphingobium root:Host-associated:Plants:Root 1.0 -genus Sphingobium root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Sphingobium root:Environmental:Terrestrial:Soil:Mine 1.0 -genus Sphingobium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Sphingobium root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Sphingobium root:Engineered:Wastewater:Water and sludge 1.0 genus Sphingobium root:Engineered:Bioremediation 1.0 genus Prosthecochloris root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -24726,7 +25137,7 @@ genus Prosthecochloris root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Prosthecochloris root:Host-associated:Mollusca 1.0 genus Prosthecochloris root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Prochlorococcus root:Environmental:Aquatic:Freshwater:Lake 1.0 -genus Prochlorococcus root:Environmental:Aquatic:Marine 29.0 +genus Prochlorococcus root:Environmental:Aquatic:Marine 30.0 genus Prochlorococcus root:Environmental:Aquatic:Marine:Oceanic 17.0 genus Prochlorococcus root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Prochlorococcus root:Host-associated:Plants 1.0 @@ -24768,8 +25179,8 @@ species Planctomyces DWL3I2 root:Environmental:Aquatic:Marine 2.0 species Planctomyces DWL3I2 root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Planctomyces DWL3I2 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Planctomyces DWL3I2 root:Environmental:Terrestrial:Soil 2.0 -species Planctomyces DWL3I2 root:Engineered:Solid waste:Composting 1.0 species Planctomyces DWL3I2 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Planctomyces DWL3I2 root:Engineered:Solid waste:Composting 1.0 species Planctomyces DWL3I2 root:Engineered:Solid waste:Composting:Grass 1.0 species Prochlorococcus ocellatum root:Environmental:Aquatic:Freshwater:Lake 1.0 species Saccharibacter floricola root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -24790,11 +25201,11 @@ species Pseudomonas viridiflava root:Host-associated:Plants:Phylloplane 3.0 species Pseudomonas viridiflava root:Host-associated:Plants:Rhizosphere 1.0 species Pseudomonas viridiflava root:Environmental:Terrestrial:Soil 14.0 species Pseudomonas viridiflava root:Environmental:Terrestrial:Soil:Wetlands 1.0 +species Pseudomonas viridiflava root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Pseudomonas viridiflava root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas viridiflava root:Host-associated:Plants:Root 2.0 species Pseudomonas viridiflava root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 species Pseudomonas viridiflava root:Engineered:Food production 1.0 -species Pseudomonas viridiflava root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Pseudomonas viridiflava root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Pseudomonas viridiflava root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 species Pseudomonas viridiflava root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 @@ -24858,6 +25269,7 @@ family Chlamydomonadaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Chlamydomonadaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Chlamydomonadaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Chlamydomonadaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 +family Chlamydomonadaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Chlamydomonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 genus Chlamydomonas root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Chlamydomonas root:Engineered:Food production:Silage fermentation 1.0 @@ -24871,6 +25283,7 @@ species Planctomyces faecis root:Environmental:Aquatic:Freshwater:Lake 1.0 species Sediminibacterium chocolatum root:Environmental:Aquatic:Freshwater:Lake 1.0 species Chlamydomonas reinhardtii root:Environmental:Aquatic:Freshwater:Lake 1.0 species Chlamydomonas reinhardtii root:Environmental:Terrestrial:Soil 2.0 +species Chlamydomonas reinhardtii root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Chlamydomonas reinhardtii root:Environmental:Terrestrial:Soil:Desert 1.0 species Nodularia harveyana root:Environmental:Aquatic:Freshwater:Lake 1.0 species Rhodobacter sporium root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -24906,11 +25319,14 @@ phylum TM7 root:Host-associated:Plants:Phylloplane 1.0 phylum TM7 root:Host-associated:Plants:Rhizosphere 6.0 phylum TM7 root:Environmental:Terrestrial:Soil 28.0 phylum TM7 root:Environmental:Aquatic 1.0 +phylum TM7 root:Host-associated:Mammals:Digestive system:Midgut 2.0 phylum TM7 root:Engineered:Biogas plant:Wet fermentation 1.0 phylum TM7 root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +phylum TM7 root:Engineered:Lab enrichment 1.0 phylum TM7 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 phylum TM7 root:Environmental:Terrestrial:Soil:Grasslands 1.0 phylum TM7 root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 +phylum TM7 root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum TM7 root:Host-associated:Human:Digestive system 3.0 phylum TM7 root:Environmental:Aquatic:Freshwater 2.0 phylum TM7 root:Engineered:Solid waste:Composting 2.0 @@ -24921,11 +25337,10 @@ phylum TM7 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 phylum TM7 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum TM7 root:Host-associated:Plants:Root 3.0 phylum TM7 root:Engineered:Food production 2.0 -phylum TM7 root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum TM7 root:Host-associated:Mammals:Digestive system:Large intestine 5.0 phylum TM7 root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum TM7 root:Engineered:Wastewater:Industrial wastewater 2.0 -phylum TM7 root:Host-associated:Insecta:Digestive system 1.0 +phylum TM7 root:Host-associated:Insecta:Digestive system 2.0 phylum TM7 root:Host-associated 2.0 phylum TM7 root:Host-associated:Mollusca 1.0 phylum TM7 root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -24942,11 +25357,9 @@ phylum TM7 root:Engineered:Wastewater:Water and sludge 4.0 phylum TM7 root:Environmental:Aquatic:Freshwater:Ice 3.0 phylum TM7 root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum TM7 root:Host-associated:Insecta 1.0 -phylum TM7 root:Engineered:Lab enrichment 1.0 phylum TM7 root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 phylum TM7 root:Engineered:Food production:Fermented vegetables 5.0 phylum TM7 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -phylum TM7 root:Host-associated:Mammals:Digestive system:Midgut 2.0 phylum TM7 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 phylum TM7 root:Engineered:Biotransformation 1.0 phylum TM7 root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 @@ -24991,6 +25404,8 @@ genus Propionivibrio root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Propionivibrio root:Engineered:Wastewater 1.0 genus Propionivibrio root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Propionivibrio root:Engineered:Wastewater:Water and sludge 1.0 +genus Propionivibrio root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +genus Propionivibrio root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus CandidatusGlomeribacter root:Environmental:Aquatic:Freshwater:Lake 1.0 genus CandidatusGlomeribacter root:Engineered:Bioreactor 1.0 genus Kaistobacter root:Environmental:Aquatic:Freshwater:Lake 2.0 @@ -25002,11 +25417,12 @@ genus Kaistobacter root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Kaistobacter root:Host-associated:Plants:Phylloplane 2.0 genus Kaistobacter root:Host-associated:Plants:Rhizosphere 4.0 genus Kaistobacter root:Environmental:Terrestrial:Soil 10.0 -genus Kaistobacter root:Environmental:Terrestrial:Soil:Desert 1.0 genus Kaistobacter root:Host-associated:Plants:Rhizosphere:Soil 3.0 +genus Kaistobacter root:Environmental:Terrestrial:Soil:Desert 1.0 genus Kaistobacter root:Environmental:Terrestrial:Soil:Mine 2.0 genus Kaistobacter root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Gallionella root:Environmental:Aquatic:Freshwater:Lake 4.0 +genus Gallionella root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Gallionella root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Gallionella root:Host-associated:Plants 1.0 genus Gallionella root:Engineered:Bioreactor 1.0 @@ -25025,7 +25441,7 @@ genus Gallionella root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainag genus Gallionella root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 genus Gallionella root:Engineered:Industrial production 1.0 genus Gallionella root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -genus Gallionella root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Gallionella root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 genus Gallionella root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 genus Streptomyces root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Streptomyces root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -25046,11 +25462,12 @@ genus Streptomyces root:Engineered:Wastewater 1.0 genus Streptomyces root:Host-associated:Human:Reproductive system:Vagina 1.0 genus Streptomyces root:Host-associated:Human:Digestive system:Oral 1.0 genus Streptomyces root:Environmental:Terrestrial:Soil:Contaminated 3.0 -genus Streptomyces root:Host-associated:Plants:Rhizosphere 26.0 +genus Streptomyces root:Host-associated:Plants:Rhizosphere 27.0 genus Streptomyces root:Environmental:Terrestrial:Soil 14.0 -genus Streptomyces root:Environmental:Aquatic:Marine:Sediment 3.0 +genus Streptomyces root:Environmental:Aquatic:Marine:Sediment 5.0 genus Streptomyces root:Environmental:Aquatic:Sediment 2.0 genus Streptomyces root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Streptomyces root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Streptomyces root:Engineered:Solid waste:Composting 7.0 genus Streptomyces root:Environmental:Terrestrial:Soil:Desert 1.0 genus Streptomyces root:Engineered:Lab enrichment:Defined media 1.0 @@ -25058,7 +25475,6 @@ genus Streptomyces root:Host-associated:Plants:Root 4.0 genus Streptomyces root:Engineered:Food production 1.0 genus Streptomyces root:Environmental:Terrestrial:Deep subsurface 1.0 genus Streptomyces root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Streptomyces root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Streptomyces root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Streptomyces root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Streptomyces root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -25069,6 +25485,7 @@ genus Streptomyces root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 genus Streptomyces root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Streptomyces root:Host-associated:Birds 1.0 genus Streptomyces root:Engineered 1.0 +genus Streptomyces root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Streptomyces root:Engineered:Biotransformation 1.0 genus Streptomyces root:Environmental:Terrestrial:Soil:Loam 1.0 genus Streptomyces root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 @@ -25077,8 +25494,8 @@ genus Sporomusa root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Sporomusa root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Sporomusa root:Environmental:Terrestrial:Soil 1.0 genus Sporomusa root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Sporomusa root:Environmental:Terrestrial:Deep subsurface 1.0 genus Sporomusa root:Engineered:Lab enrichment 1.0 +genus Sporomusa root:Environmental:Terrestrial:Deep subsurface 1.0 genus Sporomusa root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 species Propionivibrio mobilis root:Environmental:Aquatic:Freshwater:Lake 1.0 species CandidatusGlomeribacter gigasporarum root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -25097,6 +25514,7 @@ family Sphingobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 3.0 family Sphingobacteriaceae root:Environmental:Aquatic:Marine 1.0 family Sphingobacteriaceae root:Host-associated:Mammals:Digestive system 1.0 family Sphingobacteriaceae root:Environmental:Terrestrial:Soil:Forest soil 10.0 +family Sphingobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Sphingobacteriaceae root:Host-associated:Plants 5.0 family Sphingobacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Sphingobacteriaceae root:Engineered:Bioreactor 5.0 @@ -25111,7 +25529,9 @@ family Sphingobacteriaceae root:Host-associated:Plants:Rhizosphere 6.0 family Sphingobacteriaceae root:Environmental:Terrestrial:Soil 12.0 family Sphingobacteriaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Sphingobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Sphingobacteriaceae root:Engineered:Lab enrichment 1.0 family Sphingobacteriaceae root:Engineered:Lab Synthesis 1.0 +family Sphingobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 3.0 family Sphingobacteriaceae root:Host-associated:Human:Digestive system 1.0 family Sphingobacteriaceae root:Environmental:Aquatic:Freshwater 1.0 family Sphingobacteriaceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -25120,7 +25540,6 @@ family Sphingobacteriaceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Sphingobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Sphingobacteriaceae root:Engineered:Lab enrichment:Defined media 2.0 family Sphingobacteriaceae root:Host-associated:Plants:Root 2.0 -family Sphingobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 3.0 family Sphingobacteriaceae root:Environmental:Aquatic:Estuary 1.0 family Sphingobacteriaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Sphingobacteriaceae root:Engineered:Modeled 1.0 @@ -25132,7 +25551,6 @@ family Sphingobacteriaceae root:Engineered:Wastewater:Water and sludge 1.0 family Sphingobacteriaceae root:Environmental:Aquatic:Freshwater:Ice 2.0 family Sphingobacteriaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 family Sphingobacteriaceae root:Host-associated:Insecta 1.0 -family Sphingobacteriaceae root:Engineered:Lab enrichment 1.0 family Sphingobacteriaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Sphingobacteriaceae root:Engineered:Food production:Fermented vegetables 1.0 family Sphingobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -25142,6 +25560,7 @@ family Sphingobacteriaceae root:Environmental 3.0 family Sphingobacteriaceae root:Host-associated:Animal 1.0 family Sphingobacteriaceae root:Host-associated:Plants:Rhizome 1.0 family Sphingobacteriaceae root:Engineered:Industrial production 1.0 +family Sphingobacteriaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Sphingobacteriaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Sphingobacteriaceae root:Host-associated:Fungi 1.0 family Sphingobacteriaceae root:Engineered:Biotransformation 2.0 @@ -25232,6 +25651,7 @@ family Anaerolinaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Anaerolinaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Anaerolinaceae root:Environmental:Terrestrial:Soil 6.0 family Anaerolinaceae root:Engineered:Biogas plant:Wet fermentation 2.0 +family Anaerolinaceae root:Engineered:Lab enrichment 1.0 family Anaerolinaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Anaerolinaceae root:Environmental:Aquatic:Freshwater 2.0 family Anaerolinaceae root:Engineered:Lab enrichment:Defined media 1.0 @@ -25242,7 +25662,6 @@ family Anaerolinaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land family Anaerolinaceae root:Engineered:Bioreactor:Continuous culture 2.0 family Anaerolinaceae root:Engineered:Wastewater:Water and sludge 3.0 family Anaerolinaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 -family Anaerolinaceae root:Engineered:Lab enrichment 1.0 family Anaerolinaceae root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 family Helicobacteraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Helicobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 @@ -25265,8 +25684,10 @@ family Helicobacteraceae root:Host-associated:Human:Digestive system:Oral 1.0 family Helicobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 family Helicobacteraceae root:Environmental:Terrestrial:Soil 8.0 family Helicobacteraceae root:Environmental:Aquatic:Marine:Sediment 15.0 +family Helicobacteraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Helicobacteraceae root:Environmental:Aquatic:Sediment 6.0 family Helicobacteraceae root:Environmental:Aquatic 1.0 +family Helicobacteraceae root:Engineered:Lab enrichment 1.0 family Helicobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Helicobacteraceae root:Host-associated:Birds:Digestive system:Ceca 1.0 family Helicobacteraceae root:Host-associated:Human:Digestive system 1.0 @@ -25282,7 +25703,6 @@ family Helicobacteraceae root:Environmental:Aquatic:Estuary 2.0 family Helicobacteraceae root:Host-associated:Animal:Digestive system 1.0 family Helicobacteraceae root:Engineered:Wastewater:Industrial wastewater 3.0 family Helicobacteraceae root:Host-associated:Mollusca 1.0 -family Helicobacteraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Helicobacteraceae root:Engineered:Bioreactor:Continuous culture 2.0 family Helicobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Helicobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 @@ -25293,7 +25713,6 @@ family Helicobacteraceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Helicobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 family Helicobacteraceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Helicobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -family Helicobacteraceae root:Engineered:Lab enrichment 1.0 family Helicobacteraceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Helicobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Helicobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -25330,17 +25749,17 @@ family [Chthoniobacteraceae] root:Environmental:Aquatic:Marine:Coastal:Sediment family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil 33.0 family [Chthoniobacteraceae] root:Environmental:Aquatic 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +family [Chthoniobacteraceae] root:Engineered:Lab enrichment 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Wetlands 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Grasslands 6.0 +family [Chthoniobacteraceae] root:Host-associated:Plants:Rhizosphere:Soil 1.0 family [Chthoniobacteraceae] root:Engineered:Solid waste:Composting 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Desert 3.0 family [Chthoniobacteraceae] root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family [Chthoniobacteraceae] root:Host-associated:Plants:Rhizosphere:Soil 1.0 family [Chthoniobacteraceae] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Sand 1.0 family [Chthoniobacteraceae] root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family [Chthoniobacteraceae] root:Engineered:Lab enrichment 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Boreal forest 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 family [Chthoniobacteraceae] root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -25379,9 +25798,9 @@ class Blastocatellia root:Environmental:Terrestrial:Soil:Permafrost 1.0 class Blastocatellia root:Mixed 4.0 class Blastocatellia root:Host-associated:Mammals 3.0 class Blastocatellia root:Engineered:Wastewater 2.0 -class Blastocatellia root:Host-associated:Plants:Rhizosphere 13.0 +class Blastocatellia root:Host-associated:Plants:Rhizosphere 15.0 class Blastocatellia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Blastocatellia root:Environmental:Terrestrial:Soil 17.0 +class Blastocatellia root:Environmental:Terrestrial:Soil 18.0 class Blastocatellia root:Environmental:Aquatic:Marine:Sediment 1.0 class Blastocatellia root:Environmental:Aquatic:Sediment 1.0 class Blastocatellia root:Environmental:Terrestrial:Soil:Grasslands 2.0 @@ -25419,7 +25838,7 @@ order Legionellales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Legionellales root:Engineered:Wastewater:Industrial wastewater 1.0 order Legionellales root:Host-associated:Insecta:Digestive system 1.0 order Legionellales root:Host-associated:Mollusca 1.0 -order Legionellales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +order Legionellales root:Environmental:Aquatic:Freshwater:Groundwater 2.0 order Legionellales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Legionellales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Legionellales root:Environmental:Aquatic:Freshwater:Ice 1.0 @@ -25452,11 +25871,11 @@ order Gaiellales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Gaiellales root:Host-associated:Porifera 1.0 order Gaiellales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Gaiellales root:Environmental:Terrestrial:Soil:Grasslands 8.0 +order Gaiellales root:Host-associated:Plants:Rhizosphere:Soil 6.0 order Gaiellales root:Environmental:Terrestrial:Soil:Desert 4.0 order Gaiellales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Gaiellales root:Host-associated:Plants:Root 3.0 order Gaiellales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -order Gaiellales root:Host-associated:Plants:Rhizosphere:Soil 6.0 order Gaiellales root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 order Gaiellales root:Environmental:Terrestrial:Soil:Mine 1.0 order Gaiellales root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -25473,7 +25892,7 @@ order Gaiellales root:Environmental:Terrestrial:Soil:Mine drainage 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 family Hyphomicrobiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Hyphomicrobiaceae root:Environmental:Aquatic:Marine 15.0 +family Hyphomicrobiaceae root:Environmental:Aquatic:Marine 16.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -25505,8 +25924,9 @@ family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Tropical rainforest family Hyphomicrobiaceae root:Host-associated:Porifera 2.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Wetlands 7.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Grasslands 8.0 +family Hyphomicrobiaceae root:Host-associated:Plants:Rhizosphere:Soil 15.0 family Hyphomicrobiaceae root:Host-associated:Human:Digestive system 1.0 -family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater 4.0 +family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater 5.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Hyphomicrobiaceae root:Engineered:Solid waste:Composting 9.0 @@ -25517,7 +25937,6 @@ family Hyphomicrobiaceae root:Engineered:Lab enrichment:Defined media 2.0 family Hyphomicrobiaceae root:Host-associated:Plants:Root 6.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Deep subsurface 3.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Hyphomicrobiaceae root:Host-associated:Plants:Rhizosphere:Soil 15.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 family Hyphomicrobiaceae root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 @@ -25533,8 +25952,8 @@ family Hyphomicrobiaceae root:Engineered:Bioreactor:Continuous culture 2.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Hyphomicrobiaceae root:Engineered:Wastewater:Water and sludge 2.0 -family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 family Hyphomicrobiaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Hyphomicrobiaceae root:Host-associated:Insecta 2.0 family Hyphomicrobiaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 @@ -25544,6 +25963,7 @@ family Hyphomicrobiaceae root:Engineered:Biogas plant 1.0 family Hyphomicrobiaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 +family Hyphomicrobiaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Hyphomicrobiaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Hyphomicrobiaceae root:Engineered:Bioremediation 1.0 family Hyphomicrobiaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 @@ -25555,11 +25975,13 @@ family Hyphomicrobiaceae root:Host-associated:Protozoa 1.0 family Hyphomicrobiaceae root:Engineered:Solid waste:Composting:Grass 1.0 family Hyphomicrobiaceae root:Host-associated:Microbial 1.0 family Hyphomonadaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 -family Hyphomonadaceae root:Environmental:Aquatic:Marine 28.0 +family Hyphomonadaceae root:Environmental:Aquatic:Marine 37.0 family Hyphomonadaceae root:Environmental:Aquatic:Marine:Oceanic 4.0 family Hyphomonadaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Hyphomonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Hyphomonadaceae root:Host-associated:Plants 3.0 family Hyphomonadaceae root:Engineered:Bioreactor 1.0 +family Hyphomonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Hyphomonadaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Hyphomonadaceae root:Mixed 2.0 family Hyphomonadaceae root:Environmental:Terrestrial:Soil 1.0 @@ -25601,7 +26023,7 @@ family Coxiellaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Coxiellaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Coxiellaceae root:Host-associated 1.0 family Coxiellaceae root:Host-associated:Mollusca 1.0 -family Coxiellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Coxiellaceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 family Coxiellaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Coxiellaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Coxiellaceae root:Host-associated:Insecta 1.0 @@ -25616,8 +26038,8 @@ family Pyrinomonadaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Pyrinomonadaceae root:Environmental:Terrestrial:Soil:Agricultural 4.0 family Pyrinomonadaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Pyrinomonadaceae root:Mixed 3.0 -family Pyrinomonadaceae root:Host-associated:Plants:Rhizosphere 3.0 -family Pyrinomonadaceae root:Environmental:Terrestrial:Soil 16.0 +family Pyrinomonadaceae root:Host-associated:Plants:Rhizosphere 5.0 +family Pyrinomonadaceae root:Environmental:Terrestrial:Soil 17.0 family Pyrinomonadaceae root:Environmental:Aquatic:Sediment 1.0 family Pyrinomonadaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Pyrinomonadaceae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -25640,7 +26062,7 @@ genus Acidibacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Acidibacter root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Acidibacter root:Mixed 3.0 genus Acidibacter root:Host-associated:Plants:Rhizosphere 5.0 -genus Acidibacter root:Environmental:Terrestrial:Soil 18.0 +genus Acidibacter root:Environmental:Terrestrial:Soil 19.0 genus Acidibacter root:Environmental:Aquatic:Sediment 1.0 genus Acidibacter root:Environmental:Aquatic 1.0 genus Acidibacter root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 @@ -25693,12 +26115,13 @@ genus Stenotrophobacter root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Stenotrophobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Stenotrophobacter root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Stenotrophobacter root:Mixed 1.0 +genus Stenotrophobacter root:Host-associated:Plants:Rhizosphere 1.0 genus Stenotrophobacter root:Environmental:Terrestrial:Soil 1.0 genus Rhodomicrobium root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Rhodomicrobium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Rhodomicrobium root:Mixed 1.0 genus Rhodomicrobium root:Host-associated:Plants:Rhizosphere 1.0 -genus Rhodomicrobium root:Environmental:Terrestrial:Soil 1.0 +genus Rhodomicrobium root:Environmental:Terrestrial:Soil 2.0 genus Rhodomicrobium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Rhodomicrobium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Rhodomicrobium root:Host-associated:Mollusca 1.0 @@ -25719,8 +26142,8 @@ genus Coxiella root:Environmental:Aquatic:Marine:Coastal 1.0 genus Coxiella root:Host-associated 1.0 genus Coxiella root:Host-associated:Mollusca 1.0 genus Coxiella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Coxiella root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 genus Coxiella root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Coxiella root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Coxiella root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Coxiella root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 genus Coxiella root:Host-associated:Mammals:Nervous system:Brain 1.0 @@ -25744,10 +26167,10 @@ genus Gaiella root:Host-associated:Plants:Rhizosphere 16.0 genus Gaiella root:Environmental:Terrestrial:Soil 15.0 genus Gaiella root:Environmental:Aquatic:Marine:Sediment 1.0 genus Gaiella root:Environmental:Aquatic:Sediment 2.0 +genus Gaiella root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Gaiella root:Environmental:Aquatic:Marine:Coastal 1.0 genus Gaiella root:Environmental:Terrestrial:Soil:Desert 1.0 genus Gaiella root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -genus Gaiella root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Gaiella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Gaiella root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Calothrix sp. KVSF5 root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -25789,35 +26212,37 @@ phylum OP3 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 phylum OP3 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 phylum Fibrobacteres root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Fibrobacteres root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Fecal 33.0 +phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Fecal 34.0 phylum Fibrobacteres root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Fibrobacteres root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 phylum Fibrobacteres root:Environmental:Aquatic:Marine 5.0 phylum Fibrobacteres root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -phylum Fibrobacteres root:Host-associated:Mammals:Digestive system 12.0 +phylum Fibrobacteres root:Host-associated:Mammals:Digestive system 14.0 phylum Fibrobacteres root:Environmental:Terrestrial:Soil:Forest soil 2.0 phylum Fibrobacteres root:Host-associated:Plants 3.0 phylum Fibrobacteres root:Engineered:Bioreactor 4.0 +phylum Fibrobacteres root:Mixed 1.0 phylum Fibrobacteres root:Host-associated:Mammals 2.0 phylum Fibrobacteres root:Engineered:Food production:Dairy products 2.0 phylum Fibrobacteres root:Host-associated:Plants:Rhizosphere 2.0 +phylum Fibrobacteres root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Fibrobacteres root:Environmental:Terrestrial:Soil 5.0 phylum Fibrobacteres root:Environmental:Aquatic:Marine:Sediment 3.0 +phylum Fibrobacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Fibrobacteres root:Environmental:Aquatic:Sediment 1.0 phylum Fibrobacteres root:Host-associated:Porifera 1.0 -phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Stomach:Rumen 26.0 +phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Stomach:Rumen 27.0 +phylum Fibrobacteres root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Fibrobacteres root:Engineered:Solid waste:Composting 4.0 phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 -phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 phylum Fibrobacteres root:Engineered:Lab enrichment:Defined media 1.0 phylum Fibrobacteres root:Engineered:Food production 1.0 phylum Fibrobacteres root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Fibrobacteres root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Fibrobacteres root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Large intestine 5.0 phylum Fibrobacteres root:Host-associated:Insecta:Digestive system 1.0 phylum Fibrobacteres root:Host-associated 1.0 -phylum Fibrobacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Fibrobacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 phylum Fibrobacteres root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 phylum Fibrobacteres root:Engineered:Wastewater:Water and sludge 2.0 @@ -25827,6 +26252,7 @@ phylum Fibrobacteres root:Host-associated:Birds:Digestive system 2.0 phylum Fibrobacteres root:Engineered:Biogas plant 1.0 phylum Fibrobacteres root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 phylum Fibrobacteres root:Host-associated:Mammals:Respiratory system 1.0 +phylum Fibrobacteres root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Fibrobacteres root:Engineered:Solid waste:Composting:Bioreactor 1.0 phylum Fibrobacteres root:Engineered:Solid waste:Composting:Grass 1.0 phylum Fibrobacteres root:Host-associated:Mollusca:Digestive system:Glands 1.0 @@ -25839,10 +26265,10 @@ class [Rhodothermi] root:Host-associated:Plants 1.0 class [Rhodothermi] root:Engineered:Wastewater 1.0 class [Rhodothermi] root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class [Rhodothermi] root:Environmental:Terrestrial:Soil 6.0 +class [Rhodothermi] root:Host-associated:Plants:Rhizosphere:Soil 2.0 class [Rhodothermi] root:Environmental:Aquatic:Marine:Coastal 1.0 class [Rhodothermi] root:Engineered:Solid waste:Composting 1.0 class [Rhodothermi] root:Environmental:Terrestrial:Soil:Desert 5.0 -class [Rhodothermi] root:Host-associated:Plants:Rhizosphere:Soil 2.0 class [Rhodothermi] root:Environmental:Terrestrial:Soil:Sand 1.0 class [Rhodothermi] root:Environmental:Aquatic:Thermal springs:Sediment 1.0 class [Rhodothermi] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -25853,7 +26279,7 @@ class [Rhodothermi] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Sa class [Rhodothermi] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline 1.0 class [Rhodothermi] root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 family Colwelliaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 -family Colwelliaceae root:Environmental:Aquatic:Marine 40.0 +family Colwelliaceae root:Environmental:Aquatic:Marine 43.0 family Colwelliaceae root:Host-associated:Fish 2.0 family Colwelliaceae root:Environmental:Aquatic:Marine:Oceanic 7.0 family Colwelliaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -25876,6 +26302,7 @@ family Colwelliaceae root:Environmental:Aquatic:Marine:Brackish 5.0 family Colwelliaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Colwelliaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 5.0 family Colwelliaceae root:Environmental:Aquatic:Marine:Pelagic 2.0 +family Colwelliaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Colwelliaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 family Colwelliaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Colwelliaceae root:Host-associated:Algae 1.0 @@ -25884,6 +26311,7 @@ family Colwelliaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contamina family Colwelliaceae root:Environmental:Aquatic:Aquaculture 2.0 family Colwelliaceae root:Host-associated:Fish:Skin 1.0 family Colwelliaceae root:Host-associated:Arthropoda 1.0 +family Colwelliaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Colwelliaceae root:Host-associated:Mollusca:Digestive system 1.0 family Colwelliaceae root:Host-associated:Cnidaria 1.0 family Colwelliaceae root:Host-associated:Mollusca:Digestive system:Glands 1.0 @@ -25940,6 +26368,7 @@ genus Polaribacter root:Environmental:Aquatic:Marine:Brackish 1.0 genus Polaribacter root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Polaribacter root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Polaribacter root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Polaribacter root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Polaribacter root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Polaribacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Polaribacter root:Environmental:Aquatic:Aquaculture 1.0 @@ -26072,9 +26501,9 @@ class Acidobacteriia root:Engineered:Wastewater 2.0 class Acidobacteriia root:Engineered:Food production:Dairy products 1.0 class Acidobacteriia root:Environmental:Terrestrial:Soil:Contaminated 7.0 class Acidobacteriia root:Host-associated:Plants:Phylloplane 3.0 -class Acidobacteriia root:Host-associated:Plants:Rhizosphere 22.0 +class Acidobacteriia root:Host-associated:Plants:Rhizosphere 24.0 class Acidobacteriia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Acidobacteriia root:Environmental:Terrestrial:Soil 92.0 +class Acidobacteriia root:Environmental:Terrestrial:Soil 94.0 class Acidobacteriia root:Environmental:Aquatic:Marine:Sediment 3.0 class Acidobacteriia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Acidobacteriia root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -26083,6 +26512,7 @@ class Acidobacteriia root:Environmental:Aquatic 1.0 class Acidobacteriia root:Environmental:Terrestrial:Soil:Tropical rainforest 7.0 class Acidobacteriia root:Environmental:Terrestrial:Soil:Wetlands 4.0 class Acidobacteriia root:Environmental:Terrestrial:Soil:Grasslands 8.0 +class Acidobacteriia root:Host-associated:Plants:Rhizosphere:Soil 10.0 class Acidobacteriia root:Environmental:Aquatic:Marine:Coastal 1.0 class Acidobacteriia root:Engineered:Solid waste:Composting 1.0 class Acidobacteriia root:Engineered:Lab enrichment:Defined media 1.0 @@ -26091,7 +26521,6 @@ class Acidobacteriia root:Environmental:Aquatic:Marine:Oil-contaminated sediment class Acidobacteriia root:Environmental:Terrestrial:Deep subsurface 1.0 class Acidobacteriia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 class Acidobacteriia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -class Acidobacteriia root:Host-associated:Plants:Rhizosphere:Soil 8.0 class Acidobacteriia root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 class Acidobacteriia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Acidobacteriia root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -26133,7 +26562,7 @@ order Acidobacteriales root:Environmental:Terrestrial:Soil:Contaminated 7.0 order Acidobacteriales root:Host-associated:Plants:Phylloplane 1.0 order Acidobacteriales root:Host-associated:Plants:Rhizosphere 19.0 order Acidobacteriales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Acidobacteriales root:Environmental:Terrestrial:Soil 91.0 +order Acidobacteriales root:Environmental:Terrestrial:Soil 92.0 order Acidobacteriales root:Environmental:Aquatic:Marine:Sediment 1.0 order Acidobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Acidobacteriales root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -26142,12 +26571,12 @@ order Acidobacteriales root:Environmental:Aquatic 1.0 order Acidobacteriales root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 order Acidobacteriales root:Environmental:Terrestrial:Soil:Wetlands 4.0 order Acidobacteriales root:Environmental:Terrestrial:Soil:Grasslands 8.0 +order Acidobacteriales root:Host-associated:Plants:Rhizosphere:Soil 9.0 order Acidobacteriales root:Environmental:Aquatic:Marine:Coastal 1.0 order Acidobacteriales root:Engineered:Solid waste:Composting 1.0 order Acidobacteriales root:Engineered:Lab enrichment:Defined media 1.0 order Acidobacteriales root:Host-associated:Plants:Root 4.0 order Acidobacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -order Acidobacteriales root:Host-associated:Plants:Rhizosphere:Soil 7.0 order Acidobacteriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Acidobacteriales root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 order Acidobacteriales root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 @@ -26171,7 +26600,7 @@ order Acidobacteriales root:Engineered:Wastewater:Industrial wastewater:Mine wat family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Lake 2.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Caulobacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Caulobacteraceae root:Environmental:Aquatic:Marine 8.0 +family Caulobacteraceae root:Environmental:Aquatic:Marine 11.0 family Caulobacteraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Caulobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Geologic 1.0 @@ -26198,8 +26627,10 @@ family Caulobacteraceae root:Environmental:Aquatic:Marine:Sediment 7.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Caulobacteraceae root:Environmental:Aquatic 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +family Caulobacteraceae root:Engineered:Lab enrichment 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 -family Caulobacteraceae root:Environmental:Aquatic:Freshwater 3.0 +family Caulobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 7.0 +family Caulobacteraceae root:Environmental:Aquatic:Freshwater 4.0 family Caulobacteraceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Caulobacteraceae root:Engineered:Solid waste:Composting 2.0 family Caulobacteraceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -26207,7 +26638,6 @@ family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 family Caulobacteraceae root:Environmental:Terrestrial:Soil:Desert 2.0 family Caulobacteraceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Caulobacteraceae root:Host-associated:Plants:Root 2.0 -family Caulobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Lentic 2.0 family Caulobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Caulobacteraceae root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 @@ -26221,7 +26651,7 @@ family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Drinking water:Del family Caulobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 family Caulobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 -family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 7.0 +family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 9.0 family Caulobacteraceae root:Engineered:Wastewater:Water and sludge 3.0 family Caulobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 @@ -26229,7 +26659,6 @@ family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Caulobacteraceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Caulobacteraceae root:Engineered:Built environment 1.0 -family Caulobacteraceae root:Engineered:Lab enrichment 1.0 family Caulobacteraceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Caulobacteraceae root:Environmental 1.0 family Caulobacteraceae root:Host-associated:Animal 1.0 @@ -26243,6 +26672,7 @@ family Caulobacteraceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminate family Caulobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Soil:Loam 1.0 family Caulobacteraceae root:Environmental:Terrestrial:Volcanic 1.0 +family Caulobacteraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Caulobacteraceae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 family Acidobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 2.0 family Acidobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 @@ -26257,7 +26687,7 @@ family Acidobacteriaceae root:Mixed 1.0 family Acidobacteriaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 family Acidobacteriaceae root:Host-associated:Plants:Phylloplane 1.0 family Acidobacteriaceae root:Host-associated:Plants:Rhizosphere 15.0 -family Acidobacteriaceae root:Environmental:Terrestrial:Soil 49.0 +family Acidobacteriaceae root:Environmental:Terrestrial:Soil 50.0 family Acidobacteriaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Acidobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Acidobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -26266,11 +26696,11 @@ family Acidobacteriaceae root:Environmental:Aquatic 1.0 family Acidobacteriaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 7.0 family Acidobacteriaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Acidobacteriaceae root:Environmental:Terrestrial:Soil:Grasslands 7.0 +family Acidobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Acidobacteriaceae root:Engineered:Solid waste:Composting 1.0 family Acidobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 family Acidobacteriaceae root:Host-associated:Plants:Root 1.0 family Acidobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Acidobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 3.0 family Acidobacteriaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Acidobacteriaceae root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 family Acidobacteriaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -26347,17 +26777,17 @@ class Thermoleophilia root:Environmental:Terrestrial:Soil:Contaminated 8.0 class Thermoleophilia root:Host-associated:Plants:Phylloplane 1.0 class Thermoleophilia root:Host-associated:Plants:Rhizosphere 29.0 class Thermoleophilia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Thermoleophilia root:Environmental:Terrestrial:Soil 98.0 +class Thermoleophilia root:Environmental:Terrestrial:Soil 100.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Grasslands 15.0 +class Thermoleophilia root:Host-associated:Plants:Rhizosphere:Soil 14.0 class Thermoleophilia root:Engineered:Solid waste:Composting 8.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Desert 9.0 class Thermoleophilia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 class Thermoleophilia root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Thermoleophilia root:Host-associated:Plants:Root 4.0 class Thermoleophilia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -class Thermoleophilia root:Host-associated:Plants:Rhizosphere:Soil 12.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 class Thermoleophilia root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 class Thermoleophilia root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 @@ -26390,10 +26820,10 @@ genus Agrobacterium root:Environmental:Aquatic:Lentic:Brackish 2.0 genus Agrobacterium root:Host-associated:Plants 3.0 genus Agrobacterium root:Host-associated:Plants:Rhizosphere 1.0 genus Agrobacterium root:Environmental:Terrestrial:Soil 3.0 +genus Agrobacterium root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Agrobacterium root:Host-associated:Human:Digestive system 1.0 genus Agrobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Agrobacterium root:Engineered:Food production 1.0 -genus Agrobacterium root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Agrobacterium root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Agrobacterium root:Engineered:Biotransformation 1.0 genus Agrobacterium root:Host-associated:Mollusca:Digestive system:Glands 1.0 @@ -26440,10 +26870,10 @@ phylum OP11 root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Lentisphaerae root:Host-associated:Mammals:Digestive system:Fecal 10.0 phylum Lentisphaerae root:Host-associated:Birds:Digestive system:Fecal 2.0 -phylum Lentisphaerae root:Host-associated:Human:Digestive system:Large intestine:Fecal 68.0 +phylum Lentisphaerae root:Host-associated:Human:Digestive system:Large intestine:Fecal 70.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine 14.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine:Oceanic 10.0 -phylum Lentisphaerae root:Host-associated:Mammals:Digestive system 5.0 +phylum Lentisphaerae root:Host-associated:Mammals:Digestive system 6.0 phylum Lentisphaerae root:Host-associated:Human:Digestive system:Large intestine 3.0 phylum Lentisphaerae root:Engineered:Bioreactor 3.0 phylum Lentisphaerae root:Engineered:Wastewater:Activated Sludge 2.0 @@ -26456,9 +26886,11 @@ phylum Lentisphaerae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2 phylum Lentisphaerae root:Environmental:Terrestrial:Soil:Contaminated 2.0 phylum Lentisphaerae root:Environmental:Terrestrial:Soil 2.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine:Sediment 5.0 +phylum Lentisphaerae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Sediment 1.0 phylum Lentisphaerae root:Environmental:Aquatic 1.0 phylum Lentisphaerae root:Host-associated:Porifera 1.0 +phylum Lentisphaerae root:Engineered:Lab enrichment 2.0 phylum Lentisphaerae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 phylum Lentisphaerae root:Host-associated:Birds:Digestive system:Ceca 2.0 phylum Lentisphaerae root:Host-associated:Human:Digestive system 7.0 @@ -26474,7 +26906,6 @@ phylum Lentisphaerae root:Host-associated:Birds:Digestive system:Digestive tube: phylum Lentisphaerae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Estuary 4.0 phylum Lentisphaerae root:Host-associated 2.0 -phylum Lentisphaerae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Lentisphaerae root:Host-associated:Fish:Digestive system 1.0 phylum Lentisphaerae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -26483,7 +26914,6 @@ phylum Lentisphaerae root:Environmental:Aquatic:Marine:Pelagic 3.0 phylum Lentisphaerae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -phylum Lentisphaerae root:Engineered:Lab enrichment 2.0 phylum Lentisphaerae root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Lentisphaerae root:Host-associated:Birds 1.0 phylum Lentisphaerae root:Environmental:Aquatic:Aquaculture 1.0 @@ -26516,9 +26946,9 @@ genus Rhodoplanes root:Environmental:Terrestrial:Soil 46.0 genus Rhodoplanes root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 genus Rhodoplanes root:Environmental:Terrestrial:Soil:Wetlands 2.0 genus Rhodoplanes root:Environmental:Terrestrial:Soil:Grasslands 2.0 +genus Rhodoplanes root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus Rhodoplanes root:Host-associated:Plants:Root 3.0 genus Rhodoplanes root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus Rhodoplanes root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus Rhodoplanes root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 genus Rhodoplanes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Rhodoplanes root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -26566,10 +26996,10 @@ genus Telmatospirillum root:Environmental:Aquatic:Freshwater:Lake 2.0 genus Telmatospirillum root:Environmental:Aquatic:Marine 3.0 genus Telmatospirillum root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Telmatospirillum root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Telmatospirillum root:Engineered:Lab enrichment 1.0 genus Telmatospirillum root:Environmental:Aquatic:Freshwater 1.0 genus Telmatospirillum root:Environmental:Aquatic:Marine:Coastal 2.0 genus Telmatospirillum root:Engineered:Wastewater:Water and sludge 1.0 -genus Telmatospirillum root:Engineered:Lab enrichment 1.0 genus Anaerolinea root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Anaerolinea root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Anaerolinea root:Environmental:Aquatic:Marine 1.0 @@ -26584,17 +27014,19 @@ genus Anaerolinea root:Environmental:Aquatic:Freshwater:Wetlands 1.0 genus Anaerolinea root:Environmental:Terrestrial:Soil 3.0 genus Anaerolinea root:Environmental:Aquatic:Marine:Sediment 2.0 genus Anaerolinea root:Environmental:Aquatic:Sediment 1.0 +genus Anaerolinea root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Anaerolinea root:Engineered:Lab enrichment:Defined media 8.0 genus Anaerolinea root:Host-associated:Plants:Root 1.0 genus Anaerolinea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Anaerolinea root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Anaerolinea root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Anaerolinea root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +genus Anaerolinea root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Anaerolinea root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Anaerolinea root:Engineered:Bioremediation:Hydrocarbon 1.0 genus Nitrospira root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Nitrospira root:Environmental:Aquatic:Freshwater:Sediment 7.0 genus Nitrospira root:Environmental:Aquatic:Marine 2.0 +genus Nitrospira root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Nitrospira root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Nitrospira root:Host-associated:Human 1.0 genus Nitrospira root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -26610,20 +27042,21 @@ genus Nitrospira root:Environmental:Aquatic:Marine:Sediment 2.0 genus Nitrospira root:Environmental:Aquatic 1.0 genus Nitrospira root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Nitrospira root:Environmental:Terrestrial:Soil:Grasslands 3.0 +genus Nitrospira root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Nitrospira root:Environmental:Aquatic:Freshwater 1.0 genus Nitrospira root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Nitrospira root:Environmental:Terrestrial:Soil:Desert 1.0 -genus Nitrospira root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Nitrospira root:Engineered:Wastewater:Industrial wastewater 1.0 genus Nitrospira root:Environmental:Terrestrial:Soil:Clay 1.0 genus Nitrospira root:Engineered:Bioreactor:Continuous culture 1.0 genus Nitrospira root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -genus Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater 2.0 +genus Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater 3.0 genus Nitrospira root:Engineered:Wastewater:Water and sludge 1.0 genus Nitrospira root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 genus Nitrospira root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Nitrospira root:Engineered:Built environment 1.0 genus Nitrospira root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 +genus Nitrospira root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Nitrospira root:Host-associated:Invertebrates 1.0 genus Nitrospira root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Cylindrospermopsis root:Environmental:Aquatic:Freshwater:Lake 1.0 @@ -26676,10 +27109,10 @@ class [Chloracidobacteria] root:Host-associated:Plants:Rhizosphere 7.0 class [Chloracidobacteria] root:Environmental:Terrestrial:Soil 55.0 class [Chloracidobacteria] root:Environmental:Terrestrial:Soil:Wetlands 1.0 class [Chloracidobacteria] root:Environmental:Terrestrial:Soil:Grasslands 3.0 +class [Chloracidobacteria] root:Host-associated:Plants:Rhizosphere:Soil 9.0 class [Chloracidobacteria] root:Environmental:Terrestrial:Soil:Desert 3.0 class [Chloracidobacteria] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 class [Chloracidobacteria] root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -class [Chloracidobacteria] root:Host-associated:Plants:Rhizosphere:Soil 9.0 class [Chloracidobacteria] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class [Chloracidobacteria] root:Environmental:Terrestrial:Soil:Oil-contaminated 4.0 class [Chloracidobacteria] root:Engineered:Wastewater:Industrial wastewater 2.0 @@ -26699,8 +27132,8 @@ class Gemm-1 root:Environmental:Terrestrial:Soil:Permafrost 1.0 class Gemm-1 root:Engineered:Food production:Dairy products 3.0 class Gemm-1 root:Environmental:Terrestrial:Soil:Contaminated 2.0 class Gemm-1 root:Environmental:Terrestrial:Soil 12.0 -class Gemm-1 root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Gemm-1 root:Host-associated:Plants:Rhizosphere:Soil 2.0 +class Gemm-1 root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Gemm-1 root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Gemm-1 root:Environmental:Terrestrial:Soil:Mine 1.0 class Gemm-1 root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -26734,14 +27167,14 @@ order Vibrionales root:Environmental:Aquatic:Marine:Sediment 11.0 order Vibrionales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 order Vibrionales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Vibrionales root:Host-associated:Porifera 3.0 +order Vibrionales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Vibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 order Vibrionales root:Environmental:Aquatic:Marine:Coastal 9.0 order Vibrionales root:Environmental:Terrestrial:Soil:Desert 1.0 order Vibrionales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -order Vibrionales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +order Vibrionales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Vibrionales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Vibrionales root:Engineered:Food production 7.0 -order Vibrionales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Vibrionales root:Engineered:Food production:Fermented seafood 1.0 order Vibrionales root:Environmental:Aquatic:Estuary 1.0 order Vibrionales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -26750,6 +27183,7 @@ order Vibrionales root:Host-associated:Insecta:Digestive system 1.0 order Vibrionales root:Host-associated 1.0 order Vibrionales root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 order Vibrionales root:Host-associated:Mollusca 3.0 +order Vibrionales root:Host-associated:Fish:Digestive system 1.0 order Vibrionales root:Environmental:Terrestrial:Soil:Sand 1.0 order Vibrionales root:Environmental:Aquatic:Marine:Brackish 6.0 order Vibrionales root:Host-associated:Fish:Digestive system:Foregut 2.0 @@ -26757,9 +27191,9 @@ order Vibrionales root:Engineered:Bioreactor:Continuous culture 1.0 order Vibrionales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 order Vibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Vibrionales root:Environmental:Aquatic:Freshwater:Groundwater 2.0 +order Vibrionales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Vibrionales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 order Vibrionales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -order Vibrionales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Vibrionales root:Host-associated:Fish:Digestive system:Intestine 3.0 order Vibrionales root:Host-associated:Insecta 1.0 order Vibrionales root:Engineered:Built environment 2.0 @@ -26786,7 +27220,7 @@ order Vibrionales root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 order Vibrionales root:Host-associated:Annelida 1.0 order Aeromonadales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Aeromonadales root:Host-associated:Mammals:Digestive system:Fecal 9.0 -order Aeromonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 +order Aeromonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 order Aeromonadales root:Environmental:Aquatic:Marine 4.0 order Aeromonadales root:Host-associated:Fish 1.0 order Aeromonadales root:Host-associated:Mammals:Digestive system 4.0 @@ -26798,7 +27232,7 @@ order Aeromonadales root:Host-associated:Human:Digestive system:Large intestine order Aeromonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 order Aeromonadales root:Engineered:Wastewater:Activated Sludge 2.0 order Aeromonadales root:Mixed 1.0 -order Aeromonadales root:Host-associated:Mammals 2.0 +order Aeromonadales root:Host-associated:Mammals 3.0 order Aeromonadales root:Engineered:Food production:Fermented beverages 1.0 order Aeromonadales root:Engineered:Wastewater 5.0 order Aeromonadales root:Engineered:Food production:Dairy products 7.0 @@ -26809,12 +27243,12 @@ order Aeromonadales root:Engineered:Modeled:Simulated communities (microbial mix order Aeromonadales root:Environmental:Aquatic:Sediment 1.0 order Aeromonadales root:Environmental:Aquatic 2.0 order Aeromonadales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 -order Aeromonadales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 +order Aeromonadales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 14.0 order Aeromonadales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Aeromonadales root:Host-associated:Birds:Digestive system:Ceca 2.0 order Aeromonadales root:Host-associated:Human:Digestive system 1.0 order Aeromonadales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 14.0 -order Aeromonadales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +order Aeromonadales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 order Aeromonadales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Aeromonadales root:Engineered:Food production 4.0 order Aeromonadales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -26830,10 +27264,10 @@ order Aeromonadales root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 order Aeromonadales root:Host-associated:Fish:Digestive system:Foregut 1.0 order Aeromonadales root:Engineered:Bioreactor:Continuous culture 1.0 order Aeromonadales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order Aeromonadales root:Engineered:Wastewater:Water and sludge 1.0 +order Aeromonadales root:Engineered:Wastewater:Water and sludge 2.0 order Aeromonadales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Aeromonadales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -order Aeromonadales root:Host-associated:Insecta 3.0 +order Aeromonadales root:Host-associated:Insecta 4.0 order Aeromonadales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Aeromonadales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Aeromonadales root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -26869,7 +27303,7 @@ family Vibrionaceae root:Host-associated:Human:Digestive system:Large intestine: family Vibrionaceae root:Environmental:Aquatic:Marine 37.0 family Vibrionaceae root:Host-associated:Fish 5.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic 7.0 +family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic 8.0 family Vibrionaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Vibrionaceae root:Host-associated:Plants 1.0 @@ -26889,12 +27323,13 @@ family Vibrionaceae root:Environmental:Aquatic 1.0 family Vibrionaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 family Vibrionaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Vibrionaceae root:Host-associated:Porifera 4.0 +family Vibrionaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 7.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Coastal 10.0 family Vibrionaceae root:Environmental:Terrestrial:Soil:Desert 1.0 +family Vibrionaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Vibrionaceae root:Engineered:Food production 5.0 -family Vibrionaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Vibrionaceae root:Engineered:Food production:Fermented seafood 1.0 family Vibrionaceae root:Environmental:Aquatic:Estuary 3.0 family Vibrionaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -26903,13 +27338,14 @@ family Vibrionaceae root:Engineered:Modeled 1.0 family Vibrionaceae root:Host-associated:Insecta:Digestive system 1.0 family Vibrionaceae root:Host-associated 2.0 family Vibrionaceae root:Host-associated:Mollusca 1.0 +family Vibrionaceae root:Host-associated:Fish:Digestive system 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Brackish 6.0 family Vibrionaceae root:Host-associated:Fish:Digestive system:Foregut 2.0 family Vibrionaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Vibrionaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Vibrionaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Vibrionaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Vibrionaceae root:Host-associated:Fish:Digestive system:Intestine 3.0 family Vibrionaceae root:Engineered:Built environment 1.0 family Vibrionaceae root:Engineered:Food production:Fermented vegetables 2.0 @@ -26980,7 +27416,7 @@ family Aeromonadaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Aeromonadaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Aeromonadaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Aeromonadaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 -family Aeromonadaceae root:Engineered:Wastewater:Water and sludge 1.0 +family Aeromonadaceae root:Engineered:Wastewater:Water and sludge 2.0 family Aeromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Aeromonadaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Aeromonadaceae root:Host-associated:Insecta 1.0 @@ -27017,12 +27453,12 @@ genus Rheinheimera root:Environmental:Aquatic:Freshwater:Lotic 2.0 genus Rheinheimera root:Environmental:Aquatic 1.0 genus Rheinheimera root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Rheinheimera root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Rheinheimera root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Rheinheimera root:Environmental:Aquatic:Freshwater 1.0 genus Rheinheimera root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Rheinheimera root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Rheinheimera root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Rheinheimera root:Engineered:Food production 1.0 -genus Rheinheimera root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Rheinheimera root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Rheinheimera root:Host-associated:Insecta:Digestive system 1.0 genus Rheinheimera root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -27039,7 +27475,7 @@ genus Rheinheimera root:Engineered 1.0 genus Rheinheimera root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Shewanella root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Shewanella root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -genus Shewanella root:Environmental:Aquatic:Marine 15.0 +genus Shewanella root:Environmental:Aquatic:Marine 16.0 genus Shewanella root:Host-associated:Fish 1.0 genus Shewanella root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Shewanella root:Environmental:Aquatic:Marine:Oceanic 2.0 @@ -27071,7 +27507,7 @@ genus Shewanella root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Shewanella root:Engineered:Solid waste:Composting 1.0 genus Shewanella root:Environmental:Terrestrial:Soil:Desert 2.0 genus Shewanella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -genus Shewanella root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +genus Shewanella root:Host-associated:Arthropoda:Digestive system:Gut 2.0 genus Shewanella root:Host-associated:Plants:Root 2.0 genus Shewanella root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 genus Shewanella root:Engineered:Food production 3.0 @@ -27117,6 +27553,7 @@ genus Thiovirga root:Environmental:Terrestrial:Soil 1.0 genus Thiovirga root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Thiovirga root:Environmental:Aquatic:Sediment 3.0 genus Thiovirga root:Environmental:Aquatic 1.0 +genus Thiovirga root:Engineered:Lab enrichment 1.0 genus Thiovirga root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Thiovirga root:Environmental:Aquatic:Thermal springs 1.0 genus Thiovirga root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 @@ -27124,7 +27561,6 @@ genus Thiovirga root:Engineered:Modeled:Simulated communities (sequence read mix genus Thiovirga root:Engineered:Wastewater:Industrial wastewater 1.0 genus Thiovirga root:Engineered:Modeled 1.0 genus Thiovirga root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -genus Thiovirga root:Engineered:Lab enrichment 1.0 genus Thiovirga root:Host-associated:Birds 1.0 genus Thiovirga root:Engineered 1.0 genus Thiovirga root:Engineered:Biotransformation 1.0 @@ -27148,13 +27584,14 @@ genus Desulfovibrio root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1. genus Desulfovibrio root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Desulfovibrio root:Engineered:Wastewater:Activated Sludge 2.0 genus Desulfovibrio root:Mixed 1.0 -genus Desulfovibrio root:Host-associated:Mammals 1.0 +genus Desulfovibrio root:Host-associated:Mammals 2.0 genus Desulfovibrio root:Host-associated:Plants:Phylloplane 1.0 genus Desulfovibrio root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Desulfovibrio root:Environmental:Terrestrial:Soil 2.0 genus Desulfovibrio root:Environmental:Aquatic:Marine:Sediment 2.0 genus Desulfovibrio root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Desulfovibrio root:Environmental:Aquatic:Sediment 1.0 +genus Desulfovibrio root:Engineered:Lab enrichment 4.0 genus Desulfovibrio root:Host-associated:Human:Digestive system 1.0 genus Desulfovibrio root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Desulfovibrio root:Engineered:Lab enrichment:Defined media 1.0 @@ -27173,7 +27610,6 @@ genus Desulfovibrio root:Host-associated:Mammals:Gastrointestinal tract 2.0 genus Desulfovibrio root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Desulfovibrio root:Host-associated:Insecta 1.0 genus Desulfovibrio root:Host-associated:Birds:Digestive system 1.0 -genus Desulfovibrio root:Engineered:Lab enrichment 4.0 genus Desulfovibrio root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Desulfovibrio root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 genus Desulfovibrio root:Host-associated:Reptile 1.0 @@ -27183,7 +27619,7 @@ genus Desulfovibrio root:Host-associated:Mammals:Digestive system:Large intestin genus Desulfovibrio root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Pseudoalteromonas root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Pseudoalteromonas root:Environmental:Aquatic:Freshwater:Pond 1.0 -genus Pseudoalteromonas root:Environmental:Aquatic:Marine 87.0 +genus Pseudoalteromonas root:Environmental:Aquatic:Marine 93.0 genus Pseudoalteromonas root:Host-associated:Fish 3.0 genus Pseudoalteromonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Pseudoalteromonas root:Environmental:Aquatic:Marine:Oceanic 17.0 @@ -27242,6 +27678,7 @@ genus Serratia root:Host-associated:Human:Skin 1.0 genus Serratia root:Environmental:Terrestrial:Soil 1.0 genus Serratia root:Host-associated:Porifera 1.0 genus Serratia root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Serratia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Serratia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Serratia root:Engineered:Food production 1.0 genus Serratia root:Host-associated:Insecta:Digestive system 4.0 @@ -27263,7 +27700,7 @@ genus Vibrio root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Vibrio root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 genus Vibrio root:Environmental:Aquatic:Marine 34.0 genus Vibrio root:Host-associated:Fish 3.0 -genus Vibrio root:Environmental:Aquatic:Marine:Oceanic 5.0 +genus Vibrio root:Environmental:Aquatic:Marine:Oceanic 6.0 genus Vibrio root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Vibrio root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Vibrio root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -27286,27 +27723,29 @@ genus Vibrio root:Environmental:Aquatic 2.0 genus Vibrio root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 genus Vibrio root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Vibrio root:Host-associated:Porifera 3.0 +genus Vibrio root:Engineered:Lab enrichment 3.0 +genus Vibrio root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Vibrio root:Environmental:Aquatic:Freshwater 1.0 genus Vibrio root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 8.0 genus Vibrio root:Environmental:Aquatic:Marine:Coastal 13.0 +genus Vibrio root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Vibrio root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 genus Vibrio root:Engineered:Food production 3.0 -genus Vibrio root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Vibrio root:Environmental:Aquatic:Estuary 2.0 genus Vibrio root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Vibrio root:Engineered:Modeled 1.0 genus Vibrio root:Host-associated:Mollusca 1.0 +genus Vibrio root:Host-associated:Fish:Digestive system 1.0 genus Vibrio root:Environmental:Aquatic:Marine:Brackish 7.0 genus Vibrio root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Vibrio root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Vibrio root:Engineered:Wastewater:Water and sludge 1.0 +genus Vibrio root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Vibrio root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 genus Vibrio root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Vibrio root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Vibrio root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Vibrio root:Host-associated:Plants:Phylloplane:Endophytes 1.0 genus Vibrio root:Engineered:Built environment 2.0 -genus Vibrio root:Engineered:Lab enrichment 3.0 genus Vibrio root:Engineered:Food production:Fermented vegetables 1.0 genus Vibrio root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Vibrio root:Environmental:Aquatic:Aquaculture 2.0 @@ -27369,6 +27808,7 @@ species Serratia marcescens root:Environmental:Aquatic:Freshwater:Lake 1.0 species Serratia marcescens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Serratia marcescens root:Environmental:Terrestrial:Soil 1.0 species Serratia marcescens root:Host-associated:Porifera 1.0 +species Serratia marcescens root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Serratia marcescens root:Host-associated:Insecta:Digestive system 2.0 species Serratia marcescens root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Serratia marcescens root:Host-associated:Insecta 2.0 @@ -27420,7 +27860,9 @@ class Methanobacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Methanobacteria root:Environmental:Terrestrial:Soil 4.0 class Methanobacteria root:Environmental:Aquatic:Marine:Sediment 5.0 class Methanobacteria root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Methanobacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Methanobacteria root:Environmental:Aquatic:Sediment 2.0 +class Methanobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Methanobacteria root:Engineered:Biogas plant:Wet fermentation 5.0 class Methanobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 class Methanobacteria root:Environmental:Terrestrial:Soil:Wetlands 1.0 @@ -27431,7 +27873,7 @@ class Methanobacteria root:Environmental:Aquatic:Marine:Coastal 1.0 class Methanobacteria root:Environmental:Aquatic:Marine:Cold seeps 1.0 class Methanobacteria root:Engineered:Solid waste:Composting 2.0 class Methanobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 7.0 -class Methanobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +class Methanobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 class Methanobacteria root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Methanobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Methanobacteria root:Engineered:Lab enrichment:Defined media 1.0 @@ -27452,7 +27894,6 @@ class Methanobacteria root:Host-associated:Animal:Digestive system:Fecal 1.0 class Methanobacteria root:Engineered:Biogas plant 5.0 class Methanobacteria root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 class Methanobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -class Methanobacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Methanobacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Methanobacteria root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 class Methanobacteria root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 @@ -27473,7 +27914,7 @@ order Methanobacteriales root:Environmental:Terrestrial:Soil:Agricultural 3.0 order Methanobacteriales root:Engineered:Bioreactor 24.0 order Methanobacteriales root:Engineered:Wastewater:Activated Sludge 3.0 order Methanobacteriales root:Environmental:Terrestrial:Soil:Permafrost 1.0 -order Methanobacteriales root:Mixed 1.0 +order Methanobacteriales root:Mixed 2.0 order Methanobacteriales root:Host-associated:Mammals 1.0 order Methanobacteriales root:Engineered:Food production:Fermented beverages 4.0 order Methanobacteriales root:Engineered:Wastewater 2.0 @@ -27484,7 +27925,9 @@ order Methanobacteriales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Methanobacteriales root:Environmental:Terrestrial:Soil 3.0 order Methanobacteriales root:Environmental:Aquatic:Marine:Sediment 5.0 order Methanobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Methanobacteriales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Methanobacteriales root:Environmental:Aquatic:Sediment 3.0 +order Methanobacteriales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Methanobacteriales root:Engineered:Biogas plant:Wet fermentation 5.0 order Methanobacteriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 order Methanobacteriales root:Environmental:Terrestrial:Soil:Wetlands 1.0 @@ -27494,7 +27937,7 @@ order Methanobacteriales root:Environmental:Aquatic:Marine:Hydrothermal vents:Se order Methanobacteriales root:Environmental:Aquatic:Marine:Coastal 1.0 order Methanobacteriales root:Engineered:Solid waste:Composting 2.0 order Methanobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 -order Methanobacteriales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +order Methanobacteriales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 order Methanobacteriales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Methanobacteriales root:Engineered:Lab enrichment:Defined media 1.0 order Methanobacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 @@ -27513,7 +27956,6 @@ order Methanobacteriales root:Host-associated:Animal:Digestive system:Fecal 1.0 order Methanobacteriales root:Engineered:Biogas plant 4.0 order Methanobacteriales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 order Methanobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -order Methanobacteriales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Methanobacteriales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 order Methanobacteriales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 order Methanobacteriales root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 @@ -27532,15 +27974,15 @@ family Streptomycetaceae root:Engineered:Food production:Fermented beverages 1.0 family Streptomycetaceae root:Engineered:Wastewater 1.0 family Streptomycetaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 -family Streptomycetaceae root:Host-associated:Plants:Rhizosphere 25.0 +family Streptomycetaceae root:Host-associated:Plants:Rhizosphere 26.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil 22.0 -family Streptomycetaceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Streptomycetaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Streptomycetaceae root:Environmental:Aquatic:Sediment 1.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +family Streptomycetaceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Streptomycetaceae root:Engineered:Solid waste:Composting 6.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Streptomycetaceae root:Host-associated:Plants:Root 4.0 -family Streptomycetaceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Streptomycetaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Streptomycetaceae root:Host-associated 1.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 @@ -27552,9 +27994,9 @@ family Streptomycetaceae root:Engineered:Food production:Fermented vegetables 1. family Streptomycetaceae root:Host-associated:Birds 2.0 family Streptomycetaceae root:Environmental:Terrestrial:Soil:Loam 1.0 family Streptomycetaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 +family Streptomycetaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Streptomycetaceae root:Host-associated:Annelida:Digestive system 1.0 family Streptomycetaceae root:Environmental:Terrestrial:Agricultural field 1.0 -family Streptomycetaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 @@ -27569,7 +28011,7 @@ family Methanobacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Methanobacteriaceae root:Engineered:Bioreactor 24.0 family Methanobacteriaceae root:Engineered:Wastewater:Activated Sludge 4.0 family Methanobacteriaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Methanobacteriaceae root:Mixed 1.0 +family Methanobacteriaceae root:Mixed 2.0 family Methanobacteriaceae root:Host-associated:Mammals 1.0 family Methanobacteriaceae root:Engineered:Food production:Fermented beverages 4.0 family Methanobacteriaceae root:Engineered:Wastewater 2.0 @@ -27579,14 +28021,16 @@ family Methanobacteriaceae root:Host-associated:Plants:Rhizosphere 2.0 family Methanobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Methanobacteriaceae root:Environmental:Terrestrial:Soil 5.0 family Methanobacteriaceae root:Environmental:Aquatic:Marine:Sediment 5.0 +family Methanobacteriaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Sediment 3.0 +family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Methanobacteriaceae root:Engineered:Biogas plant:Wet fermentation 6.0 family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 14.0 family Methanobacteriaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Methanobacteriaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Methanobacteriaceae root:Engineered:Solid waste:Composting 2.0 family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 family Methanobacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Methanobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 @@ -27604,19 +28048,19 @@ family Methanobacteriaceae root:Engineered:Bioreactor:Continuous culture:Marine family Methanobacteriaceae root:Engineered:Biogas plant 4.0 family Methanobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -family Methanobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Methanobacteriaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 family Methanobacteriaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 family Methanobacteriaceae root:Engineered:Solid waste:Solid animal waste 1.0 family Porphyromonadaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Porphyromonadaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 -family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:Saliva 20.0 +family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Fecal 5.0 +family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:Saliva 21.0 family Porphyromonadaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 family Porphyromonadaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 family Porphyromonadaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 family Porphyromonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 42.0 +family Porphyromonadaceae root:Environmental:Aquatic:Marine 1.0 family Porphyromonadaceae root:Host-associated:Mammals:Digestive system 3.0 family Porphyromonadaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Porphyromonadaceae root:Host-associated:Human 6.0 @@ -27635,7 +28079,9 @@ family Porphyromonadaceae root:Environmental:Terrestrial:Soil 8.0 family Porphyromonadaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Porphyromonadaceae root:Environmental:Aquatic:Sediment 1.0 family Porphyromonadaceae root:Environmental:Aquatic 1.0 +family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Porphyromonadaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Porphyromonadaceae root:Engineered:Lab enrichment 2.0 family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 family Porphyromonadaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 @@ -27660,7 +28106,6 @@ family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:Supra family Porphyromonadaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Porphyromonadaceae root:Engineered:Wastewater:Water and sludge 5.0 family Porphyromonadaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -family Porphyromonadaceae root:Engineered:Lab enrichment 2.0 family Porphyromonadaceae root:Engineered:Biogas plant 3.0 family Porphyromonadaceae root:Host-associated:Reptile 1.0 family Porphyromonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -27669,7 +28114,6 @@ family Porphyromonadaceae root:Host-associated:Birds 1.0 family Porphyromonadaceae root:Environmental 1.0 family Porphyromonadaceae root:Engineered 2.0 family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 -family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Porphyromonadaceae root:Host-associated:Human:Digestive system:Oral:Throat 1.0 family Porphyromonadaceae root:Host-associated:Human:Respiratory system 2.0 family Porphyromonadaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 @@ -27719,10 +28163,10 @@ genus Methanobacterium root:Environmental:Aquatic:Sediment 2.0 genus Methanobacterium root:Engineered:Biogas plant:Wet fermentation 4.0 genus Methanobacterium root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Methanobacterium root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Methanobacterium root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Methanobacterium root:Engineered:Solid waste:Composting 1.0 genus Methanobacterium root:Engineered:Lab enrichment:Defined media 1.0 genus Methanobacterium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -genus Methanobacterium root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Methanobacterium root:Engineered:Wastewater:Industrial wastewater 1.0 genus Methanobacterium root:Engineered:Bioreactor:Continuous culture 4.0 genus Methanobacterium root:Engineered:Wastewater:Water and sludge 1.0 @@ -27741,6 +28185,7 @@ genus Paludibacter root:Engineered:Wastewater:Activated Sludge 3.0 genus Paludibacter root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Paludibacter root:Environmental:Terrestrial:Soil 3.0 genus Paludibacter root:Engineered:Biogas plant:Wet fermentation 1.0 +genus Paludibacter root:Engineered:Lab enrichment 2.0 genus Paludibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Paludibacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Paludibacter root:Host-associated:Fish:Digestive system 1.0 @@ -27749,7 +28194,6 @@ genus Paludibacter root:Engineered:Solid waste 1.0 genus Paludibacter root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Paludibacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Paludibacter root:Environmental:Aquatic:Marine:Intertidal zone 1.0 -genus Paludibacter root:Engineered:Lab enrichment 2.0 genus Paludibacter root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus Paludibacter root:Host-associated:Mammals:Nervous system:Brain 1.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Lake 2.0 @@ -27764,18 +28208,18 @@ genus Xylophilus root:Host-associated:Plants:Phylloplane 6.0 genus Xylophilus root:Host-associated:Plants:Rhizosphere 4.0 genus Xylophilus root:Environmental:Terrestrial:Soil 16.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Xylophilus root:Engineered:Lab enrichment 3.0 +genus Xylophilus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Xylophilus root:Environmental:Aquatic:Freshwater 1.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Drinking water 2.0 genus Xylophilus root:Environmental:Terrestrial:Soil:Desert 2.0 genus Xylophilus root:Host-associated:Plants:Root 1.0 genus Xylophilus root:Engineered:Food production 1.0 -genus Xylophilus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Xylophilus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Xylophilus root:Host-associated 1.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Groundwater 3.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Ice 2.0 -genus Xylophilus root:Engineered:Lab enrichment 3.0 genus Xylophilus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Xylophilus root:Environmental 1.0 genus Xylophilus root:Host-associated:Plants:Rhizome 1.0 @@ -27833,18 +28277,18 @@ species Xylophilus ampelinus root:Host-associated:Plants:Phylloplane 6.0 species Xylophilus ampelinus root:Host-associated:Plants:Rhizosphere 4.0 species Xylophilus ampelinus root:Environmental:Terrestrial:Soil 15.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Lotic 1.0 +species Xylophilus ampelinus root:Engineered:Lab enrichment 3.0 +species Xylophilus ampelinus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater 1.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Drinking water 2.0 species Xylophilus ampelinus root:Environmental:Terrestrial:Soil:Desert 2.0 species Xylophilus ampelinus root:Host-associated:Plants:Root 2.0 species Xylophilus ampelinus root:Engineered:Food production 1.0 -species Xylophilus ampelinus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Xylophilus ampelinus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Xylophilus ampelinus root:Host-associated 1.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Groundwater 3.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Ice 2.0 -species Xylophilus ampelinus root:Engineered:Lab enrichment 3.0 species Xylophilus ampelinus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Xylophilus ampelinus root:Environmental 1.0 species Xylophilus ampelinus root:Host-associated:Plants:Rhizome 1.0 @@ -27893,9 +28337,9 @@ phylum Ignavibacteriae root:Environmental:Aquatic:Marine:Intertidal zone:Salt ma phylum Ignavibacteriae root:Environmental:Aquatic:Estuary:Sediment 3.0 phylum Ignavibacteriae root:Host-associated:Human:Digestive system:Large intestine 1.0 phylum Ignavibacteriae root:Engineered:Bioreactor 8.0 -phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 -phylum Ignavibacteriae root:Engineered:Wastewater:Activated Sludge 15.0 +phylum Ignavibacteriae root:Engineered:Wastewater:Activated Sludge 16.0 phylum Ignavibacteriae root:Host-associated:Human:Skin 1.0 phylum Ignavibacteriae root:Environmental:Terrestrial:Soil:Permafrost 2.0 phylum Ignavibacteriae root:Mixed 3.0 @@ -27927,8 +28371,10 @@ phylum Ignavibacteriae root:Environmental 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +phylum Ignavibacteriae root:Host-associated:Mammals:Digestive system:Foregut 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 +phylum Ignavibacteriae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 phylum Ignavibacteriae root:Host-associated:Microbial 1.0 phylum Ignavibacteriae root:Environmental:Aquatic:Marine:Volcanic 1.0 phylum Ignavibacteriae root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 @@ -27966,7 +28412,7 @@ species Chlorophyta symbiont of Lubomirskia sp. root:Environmental:Aquatic:Marin class Halobacteria root:Environmental:Aquatic:Freshwater:Lake 2.0 class Halobacteria root:Environmental:Aquatic:Freshwater:Pond 1.0 class Halobacteria root:Environmental:Aquatic:Freshwater:Sediment 1.0 -class Halobacteria root:Environmental:Aquatic:Marine 5.0 +class Halobacteria root:Environmental:Aquatic:Marine 7.0 class Halobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 class Halobacteria root:Environmental:Aquatic:Marine:Oceanic 2.0 class Halobacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -28010,6 +28456,7 @@ class Spirochaetes root:Environmental:Terrestrial:Soil 2.0 class Spirochaetes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Spirochaetes root:Engineered:Biogas plant:Wet fermentation 2.0 class Spirochaetes root:Host-associated:Porifera 1.0 +class Spirochaetes root:Engineered:Lab enrichment 1.0 class Spirochaetes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 class Spirochaetes root:Environmental:Terrestrial:Soil:Wetlands 1.0 class Spirochaetes root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -28029,7 +28476,6 @@ class Spirochaetes root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class Spirochaetes root:Engineered:Wastewater:Water and sludge 3.0 class Spirochaetes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 class Spirochaetes root:Host-associated:Insecta 1.0 -class Spirochaetes root:Engineered:Lab enrichment 1.0 class Spirochaetes root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 class Spirochaetes root:Engineered:Biogas plant 1.0 class Spirochaetes root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -28071,10 +28517,11 @@ order Halanaerobiales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2. order Halanaerobiales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 order Halanaerobiales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Halanaerobiales root:Engineered:Biogas plant:Wet fermentation 2.0 -order Halanaerobiales root:Environmental:Terrestrial:Soil:Desert 1.0 order Halanaerobiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 -order Halanaerobiales root:Engineered:Food production:Fermented seafood 1.0 +order Halanaerobiales root:Environmental:Terrestrial:Soil:Desert 1.0 +order Halanaerobiales root:Engineered:Food production:Fermented seafood 2.0 order Halanaerobiales root:Engineered:Bioreactor:Continuous culture 2.0 +order Halanaerobiales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Halanaerobiales root:Engineered:Biogas plant 3.0 order Halanaerobiales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 3.0 order Halanaerobiales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -28125,7 +28572,7 @@ family Halobacteriaceae root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 family Halobacteriaceae root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Freshwater:Pond 2.0 -family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine 15.0 +family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine 16.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Oceanic 4.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 @@ -28135,6 +28582,7 @@ family Ectothiorhodospiraceae root:Host-associated:Human:Digestive system:Large family Ectothiorhodospiraceae root:Engineered:Bioreactor 1.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Ectothiorhodospiraceae root:Mixed 1.0 +family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Ectothiorhodospiraceae root:Environmental:Terrestrial:Soil 6.0 family Ectothiorhodospiraceae root:Environmental:Aquatic:Marine:Sediment 9.0 @@ -28167,8 +28615,9 @@ family Halanaerobiaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Halanaerobiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Halanaerobiaceae root:Engineered:Biogas plant:Wet fermentation 2.0 family Halanaerobiaceae root:Environmental:Terrestrial:Soil:Desert 2.0 -family Halanaerobiaceae root:Engineered:Food production:Fermented seafood 1.0 +family Halanaerobiaceae root:Engineered:Food production:Fermented seafood 2.0 family Halanaerobiaceae root:Engineered:Bioreactor:Continuous culture 1.0 +family Halanaerobiaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Halanaerobiaceae root:Engineered:Biogas plant 3.0 family Halanaerobiaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Halanaerobiaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 @@ -28274,9 +28723,9 @@ genus Halobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline genus Halorhodospira root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Halorhodospira root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Halorhodospira root:Environmental:Terrestrial:Soil 1.0 +genus Halorhodospira root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Halorhodospira root:Environmental:Terrestrial:Soil:Desert 1.0 genus Halorhodospira root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 -genus Halorhodospira root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Halorhodospira root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Halorhodospira root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Halorhodospira root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline 1.0 @@ -28306,8 +28755,8 @@ species Haloferax R30 root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Pond 2.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Deinococcus-Thermus root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 -phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine 8.0 +phylum Deinococcus-Thermus root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine 10.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 11.0 @@ -28321,9 +28770,9 @@ phylum Deinococcus-Thermus root:Engineered:Bioreactor 25.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Deinococcus-Thermus root:Engineered:Wastewater:Activated Sludge 5.0 phylum Deinococcus-Thermus root:Host-associated:Human:Skin 14.0 -phylum Deinococcus-Thermus root:Mixed 8.0 +phylum Deinococcus-Thermus root:Mixed 9.0 phylum Deinococcus-Thermus root:Host-associated:Mammals 2.0 -phylum Deinococcus-Thermus root:Engineered:Food production:Fermented beverages 2.0 +phylum Deinococcus-Thermus root:Engineered:Food production:Fermented beverages 3.0 phylum Deinococcus-Thermus root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 phylum Deinococcus-Thermus root:Host-associated:Human:Reproductive system:Vagina 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 27.0 @@ -28332,9 +28781,12 @@ phylum Deinococcus-Thermus root:Engineered:Food production:Dairy products 2.0 phylum Deinococcus-Thermus root:Host-associated:Plants:Phylloplane 1.0 phylum Deinococcus-Thermus root:Environmental:Terrestrial:Soil 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Sediment 1.0 +phylum Deinococcus-Thermus root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Sediment 3.0 phylum Deinococcus-Thermus root:Host-associated:Porifera 1.0 +phylum Deinococcus-Thermus root:Engineered:Lab enrichment 1.0 phylum Deinococcus-Thermus root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +phylum Deinococcus-Thermus root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Deinococcus-Thermus root:Host-associated:Human:Digestive system 5.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Thermal springs 2.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -28346,13 +28798,13 @@ phylum Deinococcus-Thermus root:Engineered:Lab enrichment:Defined media 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Marine:Neritic zone 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -phylum Deinococcus-Thermus root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Deinococcus-Thermus root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Estuary 14.0 phylum Deinococcus-Thermus root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 phylum Deinococcus-Thermus root:Host-associated:Animal:Digestive system 1.0 phylum Deinococcus-Thermus root:Engineered:Wastewater:Industrial wastewater 3.0 phylum Deinococcus-Thermus root:Host-associated 1.0 +phylum Deinococcus-Thermus root:Host-associated:Fish:Digestive system 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Ice:Glacier 3.0 phylum Deinococcus-Thermus root:Engineered:Bioreactor:Continuous culture 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 @@ -28361,7 +28813,6 @@ phylum Deinococcus-Thermus root:Host-associated:Reptile:Oral cavity 1.0 phylum Deinococcus-Thermus root:Environmental:Aquatic:Freshwater:Ice 2.0 phylum Deinococcus-Thermus root:Host-associated:Insecta 1.0 phylum Deinococcus-Thermus root:Engineered:Built environment 4.0 -phylum Deinococcus-Thermus root:Engineered:Lab enrichment 1.0 phylum Deinococcus-Thermus root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 phylum Deinococcus-Thermus root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Deinococcus-Thermus root:Engineered:Biogas plant 2.0 @@ -28383,6 +28834,7 @@ phylum Deinococcus-Thermus root:Host-associated:Human:Respiratory system:Nasopha phylum Candidatus Pacebacteria root:Environmental:Aquatic:Freshwater:Lake 1.0 phylum Candidatus Pacebacteria root:Engineered:Bioreactor 1.0 phylum Candidatus Pacebacteria root:Engineered:Wastewater:Industrial wastewater 1.0 +phylum Candidatus Pacebacteria root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Oscillatoriales root:Environmental:Aquatic:Freshwater:Lake 1.0 order Oscillatoriales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Oscillatoriales root:Environmental:Aquatic:Marine 6.0 @@ -28393,16 +28845,19 @@ order Oscillatoriales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm order Oscillatoriales root:Environmental:Terrestrial:Soil:Permafrost 1.0 order Oscillatoriales root:Mixed 1.0 order Oscillatoriales root:Engineered:Food production:Fermented beverages 1.0 +order Oscillatoriales root:Host-associated:Plants:Rhizosphere 1.0 order Oscillatoriales root:Environmental:Terrestrial:Soil 1.0 order Oscillatoriales root:Environmental:Aquatic 4.0 order Oscillatoriales root:Host-associated:Porifera 1.0 order Oscillatoriales root:Environmental:Terrestrial:Soil:Grasslands 1.0 +order Oscillatoriales root:Environmental:Aquatic:Freshwater 1.0 order Oscillatoriales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Oscillatoriales root:Engineered:Solid waste:Composting 1.0 order Oscillatoriales root:Environmental:Terrestrial:Soil:Desert 1.0 order Oscillatoriales root:Engineered:Lab enrichment:Defined media 8.0 order Oscillatoriales root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 order Oscillatoriales root:Environmental:Aquatic:Marine:Brackish 1.0 +order Oscillatoriales root:Engineered:Bioreactor:Continuous culture 1.0 order Oscillatoriales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Oscillatoriales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Oscillatoriales root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -28436,6 +28891,7 @@ order Natrialbales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Sal order Natrialbales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 order Natrialbales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline 1.0 family Coleofasciculaceae root:Environmental:Aquatic:Freshwater:Lake 1.0 +family Coleofasciculaceae root:Host-associated:Plants:Rhizosphere 1.0 family Coleofasciculaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Coleofasciculaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Coleofasciculaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -28486,8 +28942,9 @@ genus Halanaerobium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Halanaerobium root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 genus Halanaerobium root:Engineered:Bioreactor 1.0 genus Halanaerobium root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Halanaerobium root:Engineered:Food production:Fermented seafood 1.0 +genus Halanaerobium root:Engineered:Food production:Fermented seafood 2.0 genus Halanaerobium root:Engineered:Wastewater:Water and sludge 1.0 +genus Halanaerobium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Halanaerobium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 genus Halanaerobium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 genus Halanaerobium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 2.0 @@ -28509,12 +28966,12 @@ genus Truepera root:Environmental:Terrestrial:Soil 1.0 genus Truepera root:Environmental:Aquatic:Marine:Sediment 5.0 genus Truepera root:Environmental:Aquatic:Sediment 1.0 genus Truepera root:Host-associated:Porifera 3.0 +genus Truepera root:Engineered:Lab enrichment 1.0 +genus Truepera root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Truepera root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Truepera root:Engineered:Solid waste:Composting 1.0 genus Truepera root:Engineered:Lab enrichment:Defined media 2.0 genus Truepera root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Truepera root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Truepera root:Engineered:Lab enrichment 1.0 genus Truepera root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 genus Methanohalobium root:Environmental:Aquatic:Freshwater:Lake 1.0 genus Methanohalobium root:Environmental:Aquatic:Marine 1.0 @@ -28601,6 +29058,7 @@ order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Contaminated 2.0 order [Chthoniobacterales] root:Host-associated:Plants:Rhizosphere 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil 21.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +order [Chthoniobacterales] root:Engineered:Lab enrichment 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Grasslands 5.0 order [Chthoniobacterales] root:Engineered:Solid waste:Composting 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Desert 2.0 @@ -28608,7 +29066,6 @@ order [Chthoniobacterales] root:Environmental:Aquatic:Freshwater:Lentic:Sediment order [Chthoniobacterales] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Sand 1.0 order [Chthoniobacterales] root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order [Chthoniobacterales] root:Engineered:Lab enrichment 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 order [Chthoniobacterales] root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -28640,21 +29097,22 @@ family Mycobacteriaceae root:Environmental:Terrestrial:Soil 15.0 family Mycobacteriaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Mycobacteriaceae root:Environmental:Aquatic 2.0 family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Mycobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Mycobacteriaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Mycobacteriaceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Mycobacteriaceae root:Host-associated:Plants:Root 3.0 family Mycobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Mycobacteriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Mycobacteriaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Mycobacteriaceae root:Engineered:Wastewater:Industrial wastewater 4.0 family Mycobacteriaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Mycobacteriaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 +family Mycobacteriaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Mycobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Mycobacteriaceae root:Engineered:Wastewater:Water and sludge 1.0 -family Mycobacteriaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 +family Mycobacteriaceae root:Engineered:Wastewater:Water and sludge 2.0 family Mycobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Mycobacteriaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Mycobacteriaceae root:Host-associated:Insecta 2.0 family Mycobacteriaceae root:Host-associated:Mammals:Respiratory system 1.0 @@ -28663,6 +29121,7 @@ family Mycobacteriaceae root:Host-associated:Arthropoda 1.0 family Mycobacteriaceae root:Engineered:Bioremediation 1.0 family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 family Mycobacteriaceae root:Engineered:Biotransformation 2.0 +family Mycobacteriaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Mycobacteriaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 family Mycobacteriaceae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 family Mycobacteriaceae root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 @@ -28685,20 +29144,21 @@ order Anaerolineales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 15.0 order Anaerolineales root:Engineered:Wastewater:Activated Sludge 43.0 order Anaerolineales root:Environmental:Terrestrial:Soil:Permafrost 2.0 order Anaerolineales root:Mixed 4.0 -order Anaerolineales root:Host-associated:Mammals 1.0 +order Anaerolineales root:Host-associated:Mammals 2.0 order Anaerolineales root:Engineered:Food production:Fermented beverages 1.0 order Anaerolineales root:Engineered:Wastewater 6.0 order Anaerolineales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Anaerolineales root:Environmental:Terrestrial:Soil:Contaminated 1.0 -order Anaerolineales root:Host-associated:Plants:Rhizosphere 2.0 -order Anaerolineales root:Environmental:Aquatic:Marine:Coastal:Sediment 11.0 +order Anaerolineales root:Host-associated:Plants:Rhizosphere 4.0 +order Anaerolineales root:Environmental:Aquatic:Marine:Coastal:Sediment 12.0 order Anaerolineales root:Environmental:Terrestrial:Soil 13.0 -order Anaerolineales root:Environmental:Aquatic:Marine:Sediment 57.0 +order Anaerolineales root:Environmental:Aquatic:Marine:Sediment 58.0 order Anaerolineales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Anaerolineales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Anaerolineales root:Environmental:Aquatic:Sediment 9.0 order Anaerolineales root:Environmental:Aquatic 2.0 order Anaerolineales root:Engineered:Biogas plant:Wet fermentation 3.0 +order Anaerolineales root:Engineered:Lab enrichment 4.0 order Anaerolineales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Anaerolineales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Anaerolineales root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -28708,6 +29168,7 @@ order Anaerolineales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sedime order Anaerolineales root:Environmental:Aquatic:Marine:Coastal 3.0 order Anaerolineales root:Environmental:Aquatic:Marine:Cold seeps 4.0 order Anaerolineales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 +order Anaerolineales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Anaerolineales root:Engineered:Lab enrichment:Defined media 9.0 order Anaerolineales root:Host-associated:Plants:Root 1.0 @@ -28718,8 +29179,10 @@ order Anaerolineales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Anaerolineales root:Engineered:Wastewater:Industrial wastewater 4.0 order Anaerolineales root:Engineered:Bioreactor:Continuous culture 3.0 order Anaerolineales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 +order Anaerolineales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Anaerolineales root:Environmental:Aquatic:Thermal springs:Sediment 3.0 order Anaerolineales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 3.0 +order Anaerolineales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 order Anaerolineales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Anaerolineales root:Engineered:Wastewater:Water and sludge 4.0 @@ -28727,16 +29190,17 @@ order Anaerolineales root:Environmental:Aquatic:Marine:Intertidal zone 2.0 order Anaerolineales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 order Anaerolineales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -order Anaerolineales root:Engineered:Lab enrichment 4.0 order Anaerolineales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 order Anaerolineales root:Engineered:Biogas plant 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 3.0 order Anaerolineales root:Environmental:Aquatic:Freshwater:Storm water 1.0 order Anaerolineales root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 +order Anaerolineales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 order Anaerolineales root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Wetlands 1.0 +order Anaerolineales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Anaerolineales root:Host-associated:Microbial 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Volcanic 1.0 order Anaerolineales root:Environmental:Aquatic:Marine:Oil seeps 1.0 @@ -28755,17 +29219,17 @@ order Solirubrobacterales root:Engineered:Wastewater 3.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Contaminated 4.0 order Solirubrobacterales root:Host-associated:Plants:Rhizosphere 21.0 order Solirubrobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Solirubrobacterales root:Environmental:Terrestrial:Soil 62.0 +order Solirubrobacterales root:Environmental:Terrestrial:Soil 64.0 order Solirubrobacterales root:Environmental:Aquatic:Sediment 1.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Grasslands 12.0 +order Solirubrobacterales root:Host-associated:Plants:Rhizosphere:Soil 6.0 order Solirubrobacterales root:Environmental:Aquatic:Marine:Coastal 1.0 order Solirubrobacterales root:Engineered:Solid waste:Composting 4.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Desert 8.0 order Solirubrobacterales root:Host-associated:Plants:Root 1.0 order Solirubrobacterales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Solirubrobacterales root:Host-associated:Plants:Rhizosphere:Soil 5.0 order Solirubrobacterales root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 order Solirubrobacterales root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 order Solirubrobacterales root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -28786,7 +29250,7 @@ order Solirubrobacterales root:Environmental:Terrestrial:Volcanic 1.0 family Conexibacteraceae root:Environmental:Aquatic:Freshwater:Lake 1.0 family Conexibacteraceae root:Environmental:Terrestrial:Soil:Agricultural 3.0 family Conexibacteraceae root:Engineered:Bioreactor 3.0 -family Conexibacteraceae root:Environmental:Terrestrial:Soil 7.0 +family Conexibacteraceae root:Environmental:Terrestrial:Soil 8.0 family Conexibacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Conexibacteraceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 family Conexibacteraceae root:Engineered:Solid waste:Composting 1.0 @@ -28803,12 +29267,12 @@ genus Conexibacter root:Engineered:Bioreactor 4.0 genus Conexibacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Conexibacter root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Conexibacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Conexibacter root:Environmental:Terrestrial:Soil 13.0 +genus Conexibacter root:Environmental:Terrestrial:Soil 14.0 genus Conexibacter root:Environmental:Terrestrial:Soil:Grasslands 3.0 +genus Conexibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Conexibacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Conexibacter root:Engineered:Solid waste:Composting 2.0 genus Conexibacter root:Environmental:Terrestrial:Soil:Desert 1.0 -genus Conexibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Conexibacter root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Conexibacter root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Conexibacter root:Engineered:Wastewater:Water and sludge 1.0 @@ -28859,9 +29323,10 @@ phylum Annelida root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Annelida root:Host-associated:Mammals 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -phylum Annelida root:Environmental:Aquatic:Marine:Sediment 12.0 +phylum Annelida root:Environmental:Aquatic:Marine:Sediment 13.0 phylum Annelida root:Environmental:Aquatic 1.0 phylum Annelida root:Host-associated:Porifera 1.0 +phylum Annelida root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 phylum Annelida root:Environmental:Aquatic:Marine:Coastal 10.0 @@ -28871,7 +29336,6 @@ phylum Annelida root:Host-associated:Algae:Red algae 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Neritic zone 1.0 -phylum Annelida root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Annelida root:Environmental:Aquatic:Estuary 4.0 phylum Annelida root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -28879,8 +29343,9 @@ phylum Annelida root:Host-associated:Mollusca 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 phylum Annelida root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Annelida root:Environmental:Aquatic:Marine:Pelagic 2.0 -phylum Annelida root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +phylum Annelida root:Engineered:Wastewater:Water and sludge 1.0 phylum Annelida root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 +phylum Annelida root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Annelida root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 phylum Annelida root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 phylum Annelida root:Engineered 1.0 @@ -28919,13 +29384,14 @@ class Spirotrichea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Sal class Dinophyceae root:Environmental:Aquatic:Freshwater:Pond 1.0 class Dinophyceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 class Dinophyceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -class Dinophyceae root:Environmental:Aquatic:Marine 151.0 -class Dinophyceae root:Environmental:Aquatic:Marine:Oceanic 49.0 +class Dinophyceae root:Environmental:Aquatic:Marine 155.0 +class Dinophyceae root:Environmental:Aquatic:Marine:Oceanic 52.0 class Dinophyceae root:Environmental:Aquatic:Lentic:Brackish 2.0 +class Dinophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 class Dinophyceae root:Environmental:Aquatic:Estuary:Sediment 2.0 class Dinophyceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Dinophyceae root:Mixed 2.0 -class Dinophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 13.0 +class Dinophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 15.0 class Dinophyceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Dinophyceae root:Environmental:Aquatic:Marine:Sediment 18.0 class Dinophyceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -28944,9 +29410,9 @@ class Dinophyceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 class Dinophyceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Dinophyceae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 class Dinophyceae root:Environmental:Aquatic:Marine:Pelagic 7.0 +class Dinophyceae root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 class Dinophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Dinophyceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -class Dinophyceae root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 class Dinophyceae root:Host-associated:Algae 1.0 class Dinophyceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Dinophyceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 @@ -28961,7 +29427,7 @@ class Polychaeta root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1. class Polychaeta root:Environmental:Aquatic:Estuary:Sediment 1.0 class Polychaeta root:Host-associated:Mammals 1.0 class Polychaeta root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -class Polychaeta root:Environmental:Aquatic:Marine:Sediment 10.0 +class Polychaeta root:Environmental:Aquatic:Marine:Sediment 11.0 class Polychaeta root:Host-associated:Porifera 1.0 class Polychaeta root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 class Polychaeta root:Environmental:Aquatic:Marine:Coastal 6.0 @@ -28971,8 +29437,8 @@ class Polychaeta root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 class Polychaeta root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Polychaeta root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 class Polychaeta root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -class Polychaeta root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Polychaeta root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 +class Polychaeta root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Polychaeta root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 class Polychaeta root:Engineered 1.0 class Polychaeta root:Host-associated:Arthropoda 1.0 @@ -29028,12 +29494,13 @@ genus Glaciecola root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Glaciecola root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Glaciecola root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Glaciecola root:Environmental:Aquatic:Marine:Pelagic 3.0 +genus Glaciecola root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Glaciecola root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Glaciecola root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Glaciecola root:Host-associated:Algae 1.0 genus Glaciecola root:Host-associated:Algae:Brown Algae 1.0 genus Spiribacter root:Environmental:Aquatic:Freshwater:Pond 2.0 -genus Spiribacter root:Environmental:Aquatic:Marine 2.0 +genus Spiribacter root:Environmental:Aquatic:Marine 3.0 genus Spiribacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Spiribacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 genus Nonlabens root:Environmental:Aquatic:Freshwater:Pond 2.0 @@ -29051,12 +29518,13 @@ genus Phormidium root:Environmental:Terrestrial:Soil 2.0 genus Phormidium root:Environmental:Aquatic 1.0 genus Phormidium root:Environmental:Terrestrial:Soil:Desert 1.0 genus Phormidium root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 +genus Phormidium root:Engineered:Bioreactor:Continuous culture 1.0 genus Phormidium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Phormidium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 genus Phormidium root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 genus Prorocentrum root:Environmental:Aquatic:Freshwater:Pond 1.0 -genus Prorocentrum root:Environmental:Aquatic:Marine 8.0 -genus Prorocentrum root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Prorocentrum root:Environmental:Aquatic:Marine 9.0 +genus Prorocentrum root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Prorocentrum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Prorocentrum root:Environmental:Aquatic:Marine:Coastal 2.0 genus Prorocentrum root:Environmental:Aquatic:Estuary 3.0 @@ -29069,6 +29537,7 @@ species Cylindrotheca closterium root:Environmental:Aquatic:Marine:Sediment 1.0 species Cylindrotheca closterium root:Environmental:Aquatic:Marine:Coastal 1.0 species Cylindrotheca closterium root:Host-associated:Algae:Brown Algae 1.0 species Phormidium sp. HE10JO root:Environmental:Aquatic:Freshwater:Pond 1.0 +species Phormidium sp. HE10JO root:Engineered:Bioreactor:Continuous culture 1.0 species Phormidium sp. HE10JO root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 species Strombidium cf. basimorphum root:Environmental:Aquatic:Freshwater:Pond 1.0 species Strombidium cf. basimorphum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -29080,11 +29549,12 @@ species Dunaliella tertiolecta root:Environmental:Aquatic:Freshwater:Pond 1.0 species Dunaliella tertiolecta root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 species Emiliania huxleyi root:Environmental:Aquatic:Freshwater:Pond 1.0 species Emiliania huxleyi root:Environmental:Aquatic:Marine 6.0 -species Emiliania huxleyi root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Emiliania huxleyi root:Environmental:Aquatic:Marine:Oceanic 2.0 species Emiliania huxleyi root:Environmental:Aquatic:Lentic:Brackish 1.0 species Emiliania huxleyi root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species Emiliania huxleyi root:Environmental:Aquatic:Marine:Coastal 1.0 species Emiliania huxleyi root:Environmental:Aquatic:Estuary 1.0 +species Emiliania huxleyi root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Eurytemora affinis root:Environmental:Aquatic:Freshwater:Pond 1.0 species Eurytemora affinis root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Eurytemora affinis root:Environmental:Aquatic:Marine 3.0 @@ -29095,8 +29565,8 @@ species Eurytemora affinis root:Environmental:Aquatic:Sediment 1.0 species Eurytemora affinis root:Environmental:Aquatic:Estuary 21.0 species Eurytemora affinis root:Host-associated:Arthropoda 1.0 species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Freshwater:Pond 2.0 -species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine 22.0 -species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine:Oceanic 3.0 +species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine 23.0 +species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine:Oceanic 4.0 species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species gamma proteobacterium HIMB30 root:Engineered:Bioreactor 1.0 species gamma proteobacterium HIMB30 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 @@ -29117,20 +29587,21 @@ species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Marine: species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Marine:Coastal 1.0 species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Estuary 4.0 +species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species alpha proteobacterium SCGC AAA158-B04 root:Environmental:Aquatic:Marine:Pelagic 4.0 species Nonlabens ulvanivorans root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Freshwater:Pond 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Freshwater:Sediment 1.0 phylum Bacillariophyta root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -phylum Bacillariophyta root:Environmental:Aquatic:Marine 97.0 -phylum Bacillariophyta root:Environmental:Aquatic:Marine:Oceanic 28.0 +phylum Bacillariophyta root:Environmental:Aquatic:Marine 98.0 +phylum Bacillariophyta root:Environmental:Aquatic:Marine:Oceanic 29.0 phylum Bacillariophyta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Lentic:Brackish 1.0 -phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 phylum Bacillariophyta root:Environmental:Aquatic:Estuary:Sediment 6.0 phylum Bacillariophyta root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Bacillariophyta root:Mixed 1.0 -phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 27.0 +phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 28.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Sediment 19.0 phylum Bacillariophyta root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -29149,9 +29620,9 @@ phylum Bacillariophyta root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminate phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Marginal Sea 3.0 +phylum Bacillariophyta root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -phylum Bacillariophyta root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Bacillariophyta root:Host-associated:Algae 1.0 phylum Bacillariophyta root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -29171,7 +29642,7 @@ order Cryptomonadales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Cryptomonadales root:Environmental:Aquatic:Marine:Pelagic 1.0 order Cryptomonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Freshwater:Pond 2.0 -family Oceanospirillaceae root:Environmental:Aquatic:Marine 58.0 +family Oceanospirillaceae root:Environmental:Aquatic:Marine 60.0 family Oceanospirillaceae root:Host-associated:Fish 2.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Oceanic 16.0 @@ -29191,13 +29662,13 @@ family Oceanospirillaceae root:Environmental:Aquatic:Marine:Sediment 11.0 family Oceanospirillaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Oceanospirillaceae root:Environmental:Aquatic 1.0 family Oceanospirillaceae root:Host-associated:Porifera 1.0 +family Oceanospirillaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Coastal 14.0 family Oceanospirillaceae root:Host-associated:Algae:Red algae 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 family Oceanospirillaceae root:Engineered:Food production 2.0 family Oceanospirillaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Oceanospirillaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Estuary 1.0 family Oceanospirillaceae root:Host-associated 1.0 @@ -29212,6 +29683,7 @@ family Oceanospirillaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Oceanospirillaceae root:Engineered:Wastewater:Water and sludge 1.0 +family Oceanospirillaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Oceanospirillaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Oceanospirillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 @@ -29236,7 +29708,7 @@ family Oceanospirillaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:D family Oceanospirillaceae root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Piscirickettsiaceae root:Environmental:Aquatic:Marine 47.0 +family Piscirickettsiaceae root:Environmental:Aquatic:Marine 54.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Oceanic 6.0 family Piscirickettsiaceae root:Environmental:Aquatic:Lentic:Brackish 2.0 @@ -29256,6 +29728,7 @@ family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Sediment 12.0 family Piscirickettsiaceae root:Environmental:Aquatic:Sediment 1.0 family Piscirickettsiaceae root:Host-associated:Porifera 1.0 family Piscirickettsiaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 +family Piscirickettsiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Coastal 5.0 @@ -29264,7 +29737,6 @@ family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Hydrothermal vents family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 4.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Neritic zone 1.0 family Piscirickettsiaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Piscirickettsiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Estuary 2.0 family Piscirickettsiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -29275,6 +29747,7 @@ family Piscirickettsiaceae root:Environmental:Aquatic:Thermal springs:Sediment 1 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 family Piscirickettsiaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +family Piscirickettsiaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 family Piscirickettsiaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 5.0 family Piscirickettsiaceae root:Engineered 1.0 @@ -29286,7 +29759,7 @@ family Piscirickettsiaceae root:Host-associated:Annelida 1.0 family Piscirickettsiaceae root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 family Porticoccaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Porticoccaceae root:Environmental:Aquatic:Marine 59.0 -family Porticoccaceae root:Environmental:Aquatic:Marine:Oceanic 24.0 +family Porticoccaceae root:Environmental:Aquatic:Marine:Oceanic 25.0 family Porticoccaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Porticoccaceae root:Host-associated:Plants 1.0 family Porticoccaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 @@ -29304,6 +29777,7 @@ family Porticoccaceae root:Environmental:Aquatic:Estuary 10.0 family Porticoccaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 family Porticoccaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 family Porticoccaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +family Porticoccaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Porticoccaceae root:Environmental:Aquatic:Marine:Pelagic 10.0 family Porticoccaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 family Porticoccaceae root:Host-associated:Fish:Skin 1.0 @@ -29358,6 +29832,7 @@ species Arcobacter sp. LPB0137 root:Environmental:Aquatic:Freshwater:Pond 2.0 species Arcobacter sp. LPB0137 root:Environmental:Aquatic:Marine 3.0 species Arcobacter sp. LPB0137 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Arcobacter sp. LPB0137 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +species Arcobacter sp. LPB0137 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Rhodohalobacter halophilus root:Environmental:Aquatic:Freshwater:Pond 1.0 species Rhodohalobacter halophilus root:Environmental:Aquatic:Marine:Sediment 2.0 species Rhodohalobacter halophilus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -29390,8 +29865,8 @@ class Chlamydiia root:Host-associated:Animal:Digestive system 1.0 class Chlamydiia root:Host-associated:Mollusca 1.0 class Chlamydiia root:Environmental:Aquatic:Marine:Brackish 1.0 class Chlamydiia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -class Chlamydiia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Chlamydiia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Chlamydiia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Chlamydiia root:Host-associated:Birds:Digestive system 2.0 class Chlamydiia root:Host-associated:Animal:Digestive system:Fecal 1.0 class Chlamydiia root:Engineered 1.0 @@ -29399,7 +29874,7 @@ class Chlamydiia root:Engineered:Bioremediation 1.0 class Chlamydiia root:Host-associated:Cnidaria 1.0 class Chlamydiia root:Host-associated:Annelida 1.0 class Synurophyceae root:Environmental:Aquatic:Freshwater:Pond 1.0 -class Synurophyceae root:Environmental:Aquatic:Marine 7.0 +class Synurophyceae root:Environmental:Aquatic:Marine 8.0 class Synurophyceae root:Environmental:Aquatic:Marine:Oceanic 1.0 class Synurophyceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Synurophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -29419,7 +29894,7 @@ order Parachlamydiales root:Host-associated:Mollusca 1.0 order Parachlamydiales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine 73.0 +family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine 78.0 family Pseudoalteromonadaceae root:Host-associated:Fish 4.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Oceanic 10.0 @@ -29437,6 +29912,7 @@ family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Sediment 1.0 family Pseudoalteromonadaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Pseudoalteromonadaceae root:Host-associated:Porifera 3.0 +family Pseudoalteromonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Coastal 6.0 @@ -29444,7 +29920,6 @@ family Pseudoalteromonadaceae root:Host-associated:Algae:Red algae 3.0 family Pseudoalteromonadaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Pseudoalteromonadaceae root:Engineered:Food production 2.0 -family Pseudoalteromonadaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Pseudoalteromonadaceae root:Environmental:Aquatic:Estuary 1.0 family Pseudoalteromonadaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Pseudoalteromonadaceae root:Host-associated:Mollusca 2.0 @@ -29471,6 +29946,7 @@ family Pseudoalteromonadaceae root:Host-associated:Annelida 1.0 family Simkaniaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Simkaniaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Simkaniaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Simkaniaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Simkaniaceae root:Environmental:Terrestrial:Soil 2.0 family Simkaniaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Simkaniaceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -29479,12 +29955,13 @@ genus Oceanospirillum root:Environmental:Aquatic:Marine:Intertidal zone:Coral re genus Lishizhenia root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Salegentibacter root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Salegentibacter root:Environmental:Aquatic:Marine 1.0 -genus Salegentibacter root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Salegentibacter root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Salegentibacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Salegentibacter root:Environmental:Aquatic:Sediment 1.0 genus Salegentibacter root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Salegentibacter root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 genus Candidatus Fritschea root:Environmental:Aquatic:Freshwater:Pond 1.0 +genus Candidatus Fritschea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Marinomonas root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Marinomonas root:Environmental:Aquatic:Marine 19.0 genus Marinomonas root:Host-associated:Fish 1.0 @@ -29518,8 +29995,8 @@ genus Marinomonas root:Host-associated:Cnidaria 1.0 genus Halomonas root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Halomonas root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Halomonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -genus Halomonas root:Environmental:Aquatic:Marine 69.0 -genus Halomonas root:Environmental:Aquatic:Marine:Oceanic 11.0 +genus Halomonas root:Environmental:Aquatic:Marine 81.0 +genus Halomonas root:Environmental:Aquatic:Marine:Oceanic 12.0 genus Halomonas root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 7.0 genus Halomonas root:Host-associated:Plants 2.0 genus Halomonas root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -29546,6 +30023,7 @@ genus Halomonas root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment genus Halomonas root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 5.0 genus Halomonas root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 genus Halomonas root:Environmental:Aquatic:Marine:Brackish 2.0 +genus Halomonas root:Engineered:Bioreactor:Continuous culture 1.0 genus Halomonas root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 genus Halomonas root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Halomonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -29559,6 +30037,7 @@ genus Halomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt c genus Halomonas root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Halomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 genus Halomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 3.0 +genus Halomonas root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Halomonas root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 genus Halomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Halomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 @@ -29572,7 +30051,7 @@ species Oceanospirillum multiglobuliferum root:Environmental:Aquatic:Freshwater: species Oceanospirillum multiglobuliferum root:Environmental:Aquatic:Marine 2.0 species Oceanospirillum multiglobuliferum root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 species Lishizhenia tianjinensis root:Environmental:Aquatic:Freshwater:Pond 1.0 -species Lishizhenia tianjinensis root:Environmental:Aquatic:Marine 1.0 +species Lishizhenia tianjinensis root:Environmental:Aquatic:Marine 2.0 species Lishizhenia tianjinensis root:Environmental:Aquatic:Marine:Oceanic 1.0 species Lishizhenia tianjinensis root:Engineered:Bioreactor 1.0 species Lishizhenia tianjinensis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -29608,7 +30087,7 @@ phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 phylum Mollusca root:Environmental:Aquatic:Estuary:Sediment 2.0 phylum Mollusca root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Mollusca root:Mixed 3.0 -phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 phylum Mollusca root:Environmental:Aquatic:Marine:Sediment 7.0 phylum Mollusca root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Mollusca root:Environmental:Aquatic 1.0 @@ -29627,8 +30106,8 @@ phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 phylum Mollusca root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Mollusca root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Mollusca root:Environmental:Aquatic:Marine:Pelagic 1.0 -phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Mollusca root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +phylum Mollusca root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Mollusca root:Host-associated:Arthropoda 1.0 phylum Mollusca root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 phylum Mollusca root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 @@ -29665,6 +30144,7 @@ order Ploima root:Environmental:Aquatic:Freshwater:Pond 1.0 order Ploima root:Environmental:Aquatic:Marine 1.0 order Sphaeropleales root:Environmental:Aquatic:Freshwater:Pond 1.0 order Sphaeropleales root:Mixed 1.0 +order Sphaeropleales root:Host-associated:Human:Digestive system:Intestine 1.0 order Sphaeropleales root:Environmental:Terrestrial:Soil 2.0 order Sphaeropleales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Sphaeropleales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 @@ -29691,7 +30171,7 @@ order Corynebacteriales root:Host-associated:Human:Digestive system:Oral:Saliva order Corynebacteriales root:Host-associated:Birds:Digestive system:Fecal 3.0 order Corynebacteriales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 order Corynebacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -order Corynebacteriales root:Environmental:Aquatic:Marine 33.0 +order Corynebacteriales root:Environmental:Aquatic:Marine 35.0 order Corynebacteriales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 order Corynebacteriales root:Host-associated:Mammals:Digestive system 1.0 order Corynebacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -29703,15 +30183,16 @@ order Corynebacteriales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Corynebacteriales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Corynebacteriales root:Environmental:Terrestrial:Soil:Agricultural 2.0 order Corynebacteriales root:Engineered:Bioreactor 14.0 +order Corynebacteriales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Corynebacteriales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Corynebacteriales root:Engineered:Wastewater:Activated Sludge 10.0 order Corynebacteriales root:Host-associated:Human:Skin 22.0 order Corynebacteriales root:Mixed 7.0 order Corynebacteriales root:Host-associated:Mammals 7.0 order Corynebacteriales root:Host-associated:Amphibia 1.0 -order Corynebacteriales root:Engineered:Food production:Fermented beverages 3.0 +order Corynebacteriales root:Engineered:Food production:Fermented beverages 4.0 order Corynebacteriales root:Host-associated:Human:Reproductive system:Vagina 3.0 -order Corynebacteriales root:Host-associated:Human:Digestive system:Oral 18.0 +order Corynebacteriales root:Host-associated:Human:Digestive system:Oral 19.0 order Corynebacteriales root:Engineered:Food production:Dairy products 4.0 order Corynebacteriales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Corynebacteriales root:Host-associated:Plants:Rhizosphere 3.0 @@ -29722,11 +30203,13 @@ order Corynebacteriales root:Engineered:Biogas plant:Wet fermentation 1.0 order Corynebacteriales root:Engineered:Lab Synthesis 1.0 order Corynebacteriales root:Host-associated:Birds:Digestive system:Ceca 1.0 order Corynebacteriales root:Host-associated:Mammals:Digestive system:Stomach 1.0 +order Corynebacteriales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Corynebacteriales root:Host-associated:Human:Digestive system 1.0 order Corynebacteriales root:Environmental:Aquatic:Marine:Coastal 1.0 order Corynebacteriales root:Engineered:Solid waste:Composting 8.0 order Corynebacteriales root:Environmental:Aquatic:Freshwater:Drinking water 1.0 order Corynebacteriales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 5.0 +order Corynebacteriales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Corynebacteriales root:Host-associated:Plants:Root 3.0 order Corynebacteriales root:Engineered:Food production 1.0 order Corynebacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -29741,10 +30224,11 @@ order Corynebacteriales root:Host-associated 1.0 order Corynebacteriales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Corynebacteriales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 4.0 order Corynebacteriales root:Engineered:Bioreactor:Continuous culture 1.0 +order Corynebacteriales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Corynebacteriales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order Corynebacteriales root:Engineered:Wastewater:Water and sludge 1.0 -order Corynebacteriales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +order Corynebacteriales root:Engineered:Wastewater:Water and sludge 2.0 order Corynebacteriales root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +order Corynebacteriales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 order Corynebacteriales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Corynebacteriales root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 order Corynebacteriales root:Host-associated:Insecta 3.0 @@ -29785,6 +30269,7 @@ family Temoridae root:Host-associated:Arthropoda 1.0 family Plectonemertidae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Scenedesmaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Scenedesmaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 +family Scenedesmaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Scenedesmaceae root:Environmental:Terrestrial:Soil 2.0 family Scenedesmaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Pythiaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 @@ -29832,7 +30317,7 @@ species Cyclops kolensis root:Environmental:Aquatic:Freshwater:Pond 1.0 species Plectonemertidae sp. MCZ IZ 25169 root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Coraliomargarita root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Coraliomargarita root:Environmental:Aquatic:Marine 20.0 -genus Coraliomargarita root:Environmental:Aquatic:Marine:Oceanic 7.0 +genus Coraliomargarita root:Environmental:Aquatic:Marine:Oceanic 8.0 genus Coraliomargarita root:Host-associated:Plants 1.0 genus Coraliomargarita root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 genus Coraliomargarita root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -29859,12 +30344,13 @@ species Nitritalea halalkaliphila root:Engineered 1.0 species Crenothrix syntrophicum root:Environmental:Aquatic:Freshwater:Pond 1.0 family Akkermansiaceae root:Environmental:Aquatic:Freshwater:Pond 1.0 family Akkermansiaceae root:Host-associated:Mammals:Digestive system:Fecal 14.0 -family Akkermansiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 22.0 +family Akkermansiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 23.0 family Akkermansiaceae root:Environmental:Aquatic:Marine 3.0 -family Akkermansiaceae root:Host-associated:Mammals:Digestive system 8.0 +family Akkermansiaceae root:Host-associated:Mammals:Digestive system 9.0 family Akkermansiaceae root:Host-associated:Mammals 2.0 family Akkermansiaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Akkermansiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Akkermansiaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Akkermansiaceae root:Host-associated:Human:Digestive system 1.0 family Akkermansiaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 family Akkermansiaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 @@ -29879,7 +30365,7 @@ genus Amylibacter root:Environmental:Aquatic:Marine:Oceanic 6.0 genus Amylibacter root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Amylibacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Amylibacter root:Host-associated:Plants 1.0 -genus Amylibacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Amylibacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Amylibacter root:Environmental:Aquatic 1.0 genus Amylibacter root:Host-associated:Porifera 2.0 genus Amylibacter root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -29902,8 +30388,8 @@ genus Hydrogenophaga root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1 genus Hydrogenophaga root:Environmental:Terrestrial:Soil 1.0 genus Hydrogenophaga root:Environmental:Aquatic:Sediment 2.0 genus Hydrogenophaga root:Environmental:Aquatic 1.0 -genus Hydrogenophaga root:Environmental:Aquatic:Freshwater 1.0 genus Hydrogenophaga root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Hydrogenophaga root:Environmental:Aquatic:Freshwater 2.0 genus Hydrogenophaga root:Engineered:Bioreactor:Continuous culture 1.0 genus Hydrogenophaga root:Environmental:Aquatic:Freshwater:Groundwater 4.0 genus Hydrogenophaga root:Engineered:Wastewater:Water and sludge 1.0 @@ -29911,20 +30397,22 @@ genus Hydrogenophaga root:Environmental:Aquatic:Freshwater:Groundwater:Mine drai genus Hydrogenophaga root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Akkermansia root:Environmental:Aquatic:Freshwater:Pond 1.0 genus Akkermansia root:Host-associated:Mammals:Digestive system:Fecal 22.0 -genus Akkermansia root:Host-associated:Human:Digestive system:Large intestine:Fecal 37.0 +genus Akkermansia root:Host-associated:Human:Digestive system:Large intestine:Fecal 38.0 genus Akkermansia root:Environmental:Aquatic:Marine 5.0 -genus Akkermansia root:Host-associated:Mammals:Digestive system 13.0 +genus Akkermansia root:Host-associated:Mammals:Digestive system 14.0 genus Akkermansia root:Mixed 1.0 genus Akkermansia root:Host-associated:Mammals 1.0 genus Akkermansia root:Host-associated:Human:Digestive system:Intestine 1.0 genus Akkermansia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Akkermansia root:Host-associated:Plants:Rhizosphere 1.0 genus Akkermansia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Akkermansia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Akkermansia root:Host-associated:Mammals:Digestive system:Midgut 3.0 +genus Akkermansia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Akkermansia root:Host-associated:Human:Digestive system 4.0 genus Akkermansia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 genus Akkermansia root:Engineered:Lab enrichment:Defined media 1.0 genus Akkermansia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -genus Akkermansia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Akkermansia root:Host-associated:Mammals:Digestive system:Large intestine 4.0 genus Akkermansia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Akkermansia root:Host-associated 1.0 @@ -29934,17 +30422,16 @@ genus Akkermansia root:Host-associated:Human:Digestive system:Large intestine:Si genus Akkermansia root:Host-associated:Mammals:Gastrointestinal tract 4.0 genus Akkermansia root:Engineered:Built environment 1.0 genus Akkermansia root:Host-associated:Animal:Digestive system:Fecal 1.0 -genus Akkermansia root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Akkermansia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 genus Akkermansia root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Freshwater:Pond 1.0 -genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine 51.0 -genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Oceanic 24.0 +genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine 52.0 +genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Oceanic 25.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Lentic:Brackish 2.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Estuary:Sediment 2.0 genus Candidatus Pelagibacter root:Engineered:Bioreactor 1.0 -genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30.0 +genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 31.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Sediment 6.0 genus Candidatus Pelagibacter root:Environmental:Aquatic 1.0 genus Candidatus Pelagibacter root:Host-associated:Porifera 1.0 @@ -29954,8 +30441,9 @@ genus Candidatus Pelagibacter root:Environmental:Aquatic:Estuary 9.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Brackish 1.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 -genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Pelagic 8.0 +genus Candidatus Pelagibacter root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Candidatus Pelagibacter root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Candidatus Pelagibacter root:Host-associated:Fish:Skin 1.0 genus Candidatus Pelagibacter root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 @@ -29971,7 +30459,7 @@ species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Lentic:Brackis species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Estuary:Sediment 2.0 species Candidatus Pelagibacter ubique root:Mixed 4.0 -species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 11.0 +species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 12.0 species Candidatus Pelagibacter ubique root:Environmental:Terrestrial:Soil 1.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Sediment 5.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic 1.0 @@ -29983,11 +30471,11 @@ species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Oceanic species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Estuary 3.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Marginal Sea 3.0 species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Pelagic 2.0 species Candidatus Pelagibacter ubique root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Candidatus Pelagibacter ubique root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Candidatus Pelagibacter ubique root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Candidatus Pelagibacter ubique root:Engineered:Built environment 1.0 species Candidatus Pelagibacter ubique root:Host-associated:Fish:Skin 1.0 species Candidatus Pelagibacter ubique root:Host-associated:Algae:Brown Algae 2.0 @@ -29995,18 +30483,18 @@ species Limnohabitans sp. 63ED37-2 root:Environmental:Aquatic:Freshwater:Pond 1. species Limnohabitans sp. 63ED37-2 root:Environmental:Aquatic:Marine 1.0 species Limnohabitans sp. 63ED37-2 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species [Eubacterium] eligens root:Environmental:Aquatic:Freshwater:Pond 1.0 -species [Eubacterium] eligens root:Host-associated:Human:Digestive system:Large intestine:Fecal 28.0 +species [Eubacterium] eligens root:Host-associated:Human:Digestive system:Large intestine:Fecal 31.0 species [Eubacterium] eligens root:Environmental:Aquatic:Marine 1.0 species [Eubacterium] eligens root:Host-associated:Human:Skin 1.0 species [Eubacterium] eligens root:Host-associated:Human:Reproductive system:Vagina 1.0 species [Eubacterium] eligens root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species [Eubacterium] eligens root:Host-associated:Human:Digestive system:Oral 1.0 species [Eubacterium] eligens root:Environmental:Aquatic:Marine:Sediment 2.0 +species [Eubacterium] eligens root:Engineered:Lab enrichment 1.0 species [Eubacterium] eligens root:Host-associated:Human:Digestive system 7.0 species [Eubacterium] eligens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species [Eubacterium] eligens root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species [Eubacterium] eligens root:Engineered:Built environment 1.0 -species [Eubacterium] eligens root:Engineered:Lab enrichment 1.0 species [Eubacterium] eligens root:Host-associated:Animal:Digestive system:Fecal 1.0 species Falcatimonas natans root:Environmental:Aquatic:Freshwater:Pond 1.0 species Falcatimonas natans root:Host-associated:Mammals:Digestive system:Fecal 2.0 @@ -30026,8 +30514,9 @@ species Candidatus Puniceispirillum marinum root:Host-associated:Plants 1.0 species Candidatus Puniceispirillum marinum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Candidatus Puniceispirillum marinum root:Environmental:Aquatic:Marine:Neritic zone 1.0 species Candidatus Puniceispirillum marinum root:Host-associated:Fish:Digestive system 1.0 -phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Sediment 6.0 -phylum Thaumarchaeota root:Environmental:Aquatic:Marine 151.0 +phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Sediment 7.0 +phylum Thaumarchaeota root:Host-associated:Mammals:Digestive system:Fecal 1.0 +phylum Thaumarchaeota root:Environmental:Aquatic:Marine 162.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic 37.0 phylum Thaumarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 @@ -30042,16 +30531,18 @@ phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Permafrost 1.0 phylum Thaumarchaeota root:Mixed 5.0 phylum Thaumarchaeota root:Engineered:Food production:Fermented beverages 1.0 -phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 18.0 +phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 20.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Thaumarchaeota root:Host-associated:Plants:Rhizosphere 17.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 -phylum Thaumarchaeota root:Environmental:Terrestrial:Soil 18.0 -phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Sediment 65.0 +phylum Thaumarchaeota root:Environmental:Terrestrial:Soil 19.0 +phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Sediment 68.0 +phylum Thaumarchaeota root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Sediment 2.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 phylum Thaumarchaeota root:Host-associated:Porifera 12.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Grasslands 1.0 +phylum Thaumarchaeota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 5.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Coastal 18.0 @@ -30070,16 +30561,18 @@ phylum Thaumarchaeota root:Engineered:Wastewater:Industrial wastewater 1.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Sand 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Brackish 8.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Clay 1.0 +phylum Thaumarchaeota root:Engineered:Bioreactor:Continuous culture 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 phylum Thaumarchaeota root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Pelagic 5.0 +phylum Thaumarchaeota root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +phylum Thaumarchaeota root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 -phylum Thaumarchaeota root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Crop 1.0 phylum Thaumarchaeota root:Engineered:Built environment 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 @@ -30091,8 +30584,10 @@ phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Groundwater:Contamin phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 phylum Thaumarchaeota root:Engineered:Industrial production 1.0 +phylum Thaumarchaeota root:Host-associated:Plants:Rhizoplane:Soil 1.0 phylum Thaumarchaeota root:Host-associated:Arthropoda 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 +phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 @@ -30102,11 +30597,11 @@ phylum Thaumarchaeota root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 phylum Thaumarchaeota root:Environmental:Terrestrial:Volcanic 1.0 phylum Thaumarchaeota root:Environmental:Aquatic:Marine:Oil seeps 1.0 -order Propionibacteriales root:Environmental:Aquatic:Freshwater:Sediment 4.0 +order Propionibacteriales root:Environmental:Aquatic:Freshwater:Sediment 6.0 order Propionibacteriales root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Propionibacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 order Propionibacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -order Propionibacteriales root:Environmental:Aquatic:Marine 35.0 +order Propionibacteriales root:Environmental:Aquatic:Marine 39.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Oceanic 4.0 order Propionibacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -30129,18 +30624,18 @@ order Propionibacteriales root:Engineered:Wastewater 2.0 order Propionibacteriales root:Host-associated:Human:Digestive system:Oral 1.0 order Propionibacteriales root:Engineered:Food production:Dairy products 1.0 order Propionibacteriales root:Environmental:Terrestrial:Soil:Contaminated 1.0 -order Propionibacteriales root:Host-associated:Plants:Rhizosphere 19.0 +order Propionibacteriales root:Host-associated:Plants:Rhizosphere 20.0 order Propionibacteriales root:Environmental:Terrestrial:Soil 4.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Sediment 6.0 order Propionibacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Propionibacteriales root:Environmental:Aquatic:Sediment 2.0 +order Propionibacteriales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Propionibacteriales root:Host-associated:Human:Digestive system 1.0 order Propionibacteriales root:Engineered:Solid waste:Composting 1.0 order Propionibacteriales root:Engineered:Lab enrichment:Defined media 4.0 order Propionibacteriales root:Host-associated:Plants:Root 1.0 order Propionibacteriales root:Engineered:Food production 1.0 order Propionibacteriales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -order Propionibacteriales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 order Propionibacteriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 order Propionibacteriales root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -30149,6 +30644,7 @@ order Propionibacteriales root:Host-associated 1.0 order Propionibacteriales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Brackish 1.0 order Propionibacteriales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +order Propionibacteriales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Propionibacteriales root:Environmental:Aquatic:Freshwater:Ice 1.0 order Propionibacteriales root:Environmental:Terrestrial:Soil:Crop 1.0 order Propionibacteriales root:Host-associated:Insecta 3.0 @@ -30158,10 +30654,11 @@ order Propionibacteriales root:Host-associated:Animal 1.0 order Propionibacteriales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 order Propionibacteriales root:Host-associated:Fungi 1.0 order Propionibacteriales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +order Propionibacteriales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 order Propionibacteriales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 order Propionibacteriales root:Host-associated:Human:Circulatory system 2.0 family Micrococcaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 -family Micrococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 16.0 +family Micrococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 17.0 family Micrococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 family Micrococcaceae root:Environmental:Aquatic:Marine 2.0 family Micrococcaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -30182,12 +30679,15 @@ family Micrococcaceae root:Engineered:Food production:Dairy products 4.0 family Micrococcaceae root:Environmental:Terrestrial:Soil:Contaminated 3.0 family Micrococcaceae root:Host-associated:Plants:Phylloplane 3.0 family Micrococcaceae root:Host-associated:Plants:Rhizosphere 5.0 -family Micrococcaceae root:Environmental:Terrestrial:Soil 25.0 +family Micrococcaceae root:Environmental:Terrestrial:Soil 26.0 family Micrococcaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Micrococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Micrococcaceae root:Environmental:Aquatic:Sediment 1.0 +family Micrococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Micrococcaceae root:Engineered:Lab enrichment 1.0 family Micrococcaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Micrococcaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 +family Micrococcaceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Micrococcaceae root:Host-associated:Human:Digestive system 3.0 family Micrococcaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Micrococcaceae root:Engineered:Solid waste:Composting 1.0 @@ -30198,7 +30698,6 @@ family Micrococcaceae root:Host-associated:Human:Digestive system:Oral:Subgingiv family Micrococcaceae root:Host-associated:Algae:Red algae 1.0 family Micrococcaceae root:Host-associated:Plants:Root 1.0 family Micrococcaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Micrococcaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Micrococcaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 family Micrococcaceae root:Host-associated:Human:Skin:Naris 1.0 family Micrococcaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -30218,7 +30717,6 @@ family Micrococcaceae root:Environmental:Terrestrial:Soil:Crop 2.0 family Micrococcaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 family Micrococcaceae root:Host-associated:Insecta 2.0 family Micrococcaceae root:Engineered:Built environment 2.0 -family Micrococcaceae root:Engineered:Lab enrichment 1.0 family Micrococcaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Micrococcaceae root:Host-associated:Reptile 1.0 family Micrococcaceae root:Host-associated:Birds 3.0 @@ -30227,7 +30725,6 @@ family Micrococcaceae root:Host-associated:Plants:Rhizome 1.0 family Micrococcaceae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 family Micrococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Micrococcaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -family Micrococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Micrococcaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Micrococcaceae root:Host-associated:Human:Respiratory system 3.0 family Micrococcaceae root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 @@ -30255,11 +30752,13 @@ family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Silt 1.0 family Nitrososphaeraceae root:Host-associated:Plants:Rhizosphere 23.0 family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil 32.0 -family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Sediment 17.0 +family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Sediment 18.0 +family Nitrososphaeraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 family Nitrososphaeraceae root:Host-associated:Porifera 2.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Grasslands 4.0 +family Nitrososphaeraceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Coastal 3.0 family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -30269,7 +30768,6 @@ family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1 family Nitrososphaeraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Nitrososphaeraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 6.0 -family Nitrososphaeraceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 family Nitrososphaeraceae root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family Nitrososphaeraceae root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -30310,11 +30808,11 @@ family Gaiellaceae root:Environmental:Aquatic:Sediment 2.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Grasslands 9.0 +family Gaiellaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Desert 4.0 family Gaiellaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Gaiellaceae root:Host-associated:Plants:Root 2.0 family Gaiellaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Gaiellaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 family Gaiellaceae root:Host-associated 1.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Clay 2.0 @@ -30326,11 +30824,12 @@ family Gaiellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminate family Gaiellaceae root:Environmental 1.0 family Gaiellaceae root:Host-associated:Animal 1.0 family Gaiellaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Gaiellaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Gaiellaceae root:Environmental:Terrestrial:Soil:Mine drainage 1.0 -family Nocardioidaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 +family Nocardioidaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 family Nocardioidaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 family Nocardioidaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -family Nocardioidaceae root:Environmental:Aquatic:Marine 38.0 +family Nocardioidaceae root:Environmental:Aquatic:Marine 39.0 family Nocardioidaceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Nocardioidaceae root:Environmental:Terrestrial:Geologic 1.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil:Forest soil 6.0 @@ -30347,20 +30846,20 @@ family Nocardioidaceae root:Host-associated:Mammals 5.0 family Nocardioidaceae root:Host-associated:Amphibia 1.0 family Nocardioidaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil:Contaminated 4.0 -family Nocardioidaceae root:Host-associated:Plants:Rhizosphere 20.0 +family Nocardioidaceae root:Host-associated:Plants:Rhizosphere 21.0 family Nocardioidaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil 39.0 family Nocardioidaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Nocardioidaceae root:Environmental:Aquatic:Sediment 2.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil:Grasslands 3.0 family Nocardioidaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +family Nocardioidaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 family Nocardioidaceae root:Engineered:Solid waste:Composting 1.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil:Desert 6.0 family Nocardioidaceae root:Engineered:Lab enrichment:Defined media 5.0 family Nocardioidaceae root:Host-associated:Plants:Root 2.0 family Nocardioidaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Nocardioidaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Nocardioidaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 family Nocardioidaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Nocardioidaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Nocardioidaceae root:Host-associated 1.0 @@ -30378,15 +30877,15 @@ family Nocardioidaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Nocardioidaceae root:Environmental 1.0 family Nocardioidaceae root:Host-associated:Animal 1.0 family Nocardioidaceae root:Host-associated:Fungi 1.0 -family Nocardioidaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 family Nocardioidaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +family Nocardioidaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 -family Bacillaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 +family Bacillaceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 family Bacillaceae root:Host-associated:Birds:Digestive system:Fecal 3.0 family Bacillaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 family Bacillaceae root:Environmental:Aquatic:Marine 7.0 family Bacillaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -family Bacillaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 +family Bacillaceae root:Environmental:Aquatic:Marine:Oceanic 3.0 family Bacillaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 family Bacillaceae root:Environmental:Terrestrial:Geologic 1.0 family Bacillaceae root:Host-associated:Human 2.0 @@ -30400,25 +30899,29 @@ family Bacillaceae root:Host-associated:Human:Skin 2.0 family Bacillaceae root:Mixed 4.0 family Bacillaceae root:Host-associated:Mammals 9.0 family Bacillaceae root:Host-associated:Amphibia 1.0 +family Bacillaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Bacillaceae root:Engineered:Food production:Fermented beverages 7.0 family Bacillaceae root:Engineered:Wastewater 2.0 family Bacillaceae root:Host-associated:Human:Digestive system:Oral 3.0 family Bacillaceae root:Engineered:Food production:Dairy products 11.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Contaminated 5.0 -family Bacillaceae root:Host-associated:Plants:Rhizosphere 26.0 +family Bacillaceae root:Host-associated:Plants:Rhizosphere 28.0 family Bacillaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -family Bacillaceae root:Environmental:Terrestrial:Soil 69.0 +family Bacillaceae root:Environmental:Terrestrial:Soil 70.0 family Bacillaceae root:Environmental:Aquatic:Marine:Sediment 24.0 family Bacillaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Bacillaceae root:Environmental:Aquatic:Sediment 4.0 family Bacillaceae root:Environmental:Aquatic 1.0 +family Bacillaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Bacillaceae root:Host-associated:Porifera 1.0 +family Bacillaceae root:Engineered:Lab enrichment 2.0 family Bacillaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Grasslands 4.0 family Bacillaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 +family Bacillaceae root:Host-associated:Plants:Rhizosphere:Soil 11.0 family Bacillaceae root:Host-associated:Human:Digestive system 4.0 family Bacillaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Bacillaceae root:Environmental:Aquatic:Thermal springs 3.0 @@ -30435,7 +30938,6 @@ family Bacillaceae root:Host-associated:Plants:Root 2.0 family Bacillaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 3.0 family Bacillaceae root:Engineered:Food production 5.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Bacillaceae root:Host-associated:Plants:Rhizosphere:Soil 10.0 family Bacillaceae root:Engineered:Food production:Fermented seafood 1.0 family Bacillaceae root:Host-associated:Human:Skin:Naris 1.0 family Bacillaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 @@ -30454,14 +30956,13 @@ family Bacillaceae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 family Bacillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Bacillaceae root:Engineered:Wastewater:Water and sludge 1.0 -family Bacillaceae root:Engineered:Lab Synthesis:Genetic cross 1.0 family Bacillaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +family Bacillaceae root:Engineered:Lab Synthesis:Genetic cross 1.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Crop 1.0 family Bacillaceae root:Host-associated:Fish:Digestive system:Intestine 2.0 -family Bacillaceae root:Engineered:Built environment 3.0 +family Bacillaceae root:Engineered:Built environment 4.0 family Bacillaceae root:Host-associated:Birds:Digestive system 1.0 -family Bacillaceae root:Engineered:Lab enrichment 2.0 family Bacillaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Bacillaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 family Bacillaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -30477,7 +30978,7 @@ family Bacillaceae root:Environmental:Aquatic:Aquaculture 1.0 family Bacillaceae root:Engineered:Industrial production 1.0 family Bacillaceae root:Host-associated:Fish:Skin 1.0 family Bacillaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -family Bacillaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Bacillaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Bacillaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 family Bacillaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 family Bacillaceae root:Engineered:Biotransformation 2.0 @@ -30507,6 +31008,7 @@ genus Arthrobacter root:Host-associated:Plants:Rhizosphere 2.0 genus Arthrobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Arthrobacter root:Environmental:Terrestrial:Soil 3.0 genus Arthrobacter root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Arthrobacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Arthrobacter root:Host-associated:Human:Digestive system 2.0 genus Arthrobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Arthrobacter root:Environmental:Aquatic:Marine:Brackish 3.0 @@ -30516,7 +31018,6 @@ genus Arthrobacter root:Environmental:Terrestrial:Soil:Crop 1.0 genus Arthrobacter root:Host-associated:Insecta 1.0 genus Arthrobacter root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Arthrobacter root:Host-associated:Birds 2.0 -genus Arthrobacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Arthrobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Arthrobacter root:Engineered:Bioremediation:Hydrocarbon 1.0 genus Arthrobacter root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 @@ -30531,15 +31032,15 @@ genus Anaeromyxobacter root:Environmental:Terrestrial:Soil:Contaminated 2.0 genus Anaeromyxobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Anaeromyxobacter root:Environmental:Terrestrial:Soil 10.0 genus Anaeromyxobacter root:Environmental:Aquatic:Sediment 5.0 +genus Anaeromyxobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Anaeromyxobacter root:Engineered:Solid waste:Composting 1.0 genus Anaeromyxobacter root:Engineered:Lab enrichment:Defined media 7.0 genus Anaeromyxobacter root:Host-associated:Plants:Root 1.0 genus Anaeromyxobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Anaeromyxobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Anaeromyxobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Anaeromyxobacter root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -genus Anaeromyxobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 -genus Candidatus Methanoperedens root:Environmental:Aquatic:Freshwater:Sediment 6.0 +genus Anaeromyxobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +genus Candidatus Methanoperedens root:Environmental:Aquatic:Freshwater:Sediment 7.0 genus Candidatus Methanoperedens root:Environmental:Aquatic:Estuary:Sediment 2.0 genus Candidatus Methanoperedens root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Candidatus Methanoperedens root:Environmental:Terrestrial:Soil 3.0 @@ -30595,22 +31096,23 @@ species Desulfobulbus elongatus root:Environmental:Aquatic:Freshwater:Sediment 3 phylum Candidatus Woesebacteria root:Environmental:Aquatic:Freshwater:Sediment 1.0 phylum Candidatus Woesebacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Candidatus Woesebacteria root:Environmental:Aquatic:Marine:Sediment 2.0 +phylum Candidatus Woesebacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Negativicutes root:Environmental:Aquatic:Freshwater:Sediment 1.0 -class Negativicutes root:Host-associated:Mammals:Digestive system:Fecal 38.0 -class Negativicutes root:Host-associated:Human:Digestive system:Oral:Saliva 25.0 +class Negativicutes root:Host-associated:Mammals:Digestive system:Fecal 40.0 +class Negativicutes root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 class Negativicutes root:Host-associated:Birds:Digestive system:Fecal 6.0 -class Negativicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 124.0 -class Negativicutes root:Environmental:Aquatic:Marine 5.0 -class Negativicutes root:Host-associated:Mammals:Digestive system 20.0 -class Negativicutes root:Host-associated:Human 12.0 +class Negativicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 135.0 +class Negativicutes root:Environmental:Aquatic:Marine 6.0 +class Negativicutes root:Host-associated:Mammals:Digestive system 22.0 +class Negativicutes root:Host-associated:Human 13.0 class Negativicutes root:Host-associated:Plants 1.0 -class Negativicutes root:Host-associated:Human:Digestive system:Large intestine 11.0 +class Negativicutes root:Host-associated:Human:Digestive system:Large intestine 12.0 class Negativicutes root:Engineered:Bioreactor 11.0 class Negativicutes root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 class Negativicutes root:Engineered:Wastewater:Activated Sludge 4.0 class Negativicutes root:Host-associated:Human:Skin 14.0 -class Negativicutes root:Mixed 7.0 -class Negativicutes root:Host-associated:Mammals 7.0 +class Negativicutes root:Mixed 9.0 +class Negativicutes root:Host-associated:Mammals 8.0 class Negativicutes root:Host-associated:Human:Digestive system:Intestine 3.0 class Negativicutes root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Negativicutes root:Engineered:Wastewater 7.0 @@ -30619,17 +31121,20 @@ class Negativicutes root:Host-associated:Human:Digestive system:Oral 58.0 class Negativicutes root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Negativicutes root:Environmental:Terrestrial:Soil 3.0 class Negativicutes root:Environmental:Aquatic:Marine:Sediment 2.0 -class Negativicutes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Negativicutes root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +class Negativicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Negativicutes root:Environmental:Aquatic:Sediment 1.0 +class Negativicutes root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Negativicutes root:Engineered:Biogas plant:Wet fermentation 3.0 -class Negativicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 10.0 +class Negativicutes root:Engineered:Lab enrichment 1.0 +class Negativicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 11.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 class Negativicutes root:Host-associated:Birds:Digestive system:Ceca 4.0 class Negativicutes root:Host-associated:Human:Digestive system 33.0 class Negativicutes root:Environmental:Aquatic:Freshwater 2.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 class Negativicutes root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 5.0 -class Negativicutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 8.0 +class Negativicutes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 12.0 class Negativicutes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 class Negativicutes root:Engineered:Lab enrichment:Defined media 2.0 @@ -30644,14 +31149,13 @@ class Negativicutes root:Host-associated:Animal:Digestive system 2.0 class Negativicutes root:Engineered:Wastewater:Industrial wastewater 2.0 class Negativicutes root:Host-associated:Insecta:Digestive system 2.0 class Negativicutes root:Host-associated 1.0 -class Negativicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Negativicutes root:Host-associated:Fish:Digestive system 1.0 class Negativicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 class Negativicutes root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 class Negativicutes root:Host-associated:Human:Reproductive system:Female 1.0 class Negativicutes root:Environmental:Aquatic:Freshwater:Groundwater 2.0 -class Negativicutes root:Engineered:Wastewater:Water and sludge 1.0 +class Negativicutes root:Engineered:Wastewater:Water and sludge 2.0 class Negativicutes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 class Negativicutes root:Environmental:Terrestrial 1.0 class Negativicutes root:Host-associated:Mammals:Gastrointestinal tract 4.0 @@ -30659,30 +31163,29 @@ class Negativicutes root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 class Negativicutes root:Host-associated:Insecta 1.0 class Negativicutes root:Engineered:Built environment 3.0 class Negativicutes root:Host-associated:Birds:Digestive system 2.0 -class Negativicutes root:Engineered:Lab enrichment 1.0 class Negativicutes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Negativicutes root:Host-associated:Animal:Digestive system:Fecal 4.0 class Negativicutes root:Engineered:Food production:Fermented vegetables 1.0 class Negativicutes root:Host-associated:Reptile 1.0 class Negativicutes root:Host-associated:Mammals:Respiratory system 1.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 -class Negativicutes root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Negativicutes root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Negativicutes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 class Negativicutes root:Host-associated:Human:Respiratory system 4.0 class Negativicutes root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Negativicutes root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Negativicutes root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Negativicutes root:Host-associated:Human:Circulatory system:Blood 1.0 class Negativicutes root:Host-associated:Human:Circulatory system 1.0 class Negativicutes root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 class Tissierellia root:Environmental:Aquatic:Freshwater:Sediment 2.0 -class Tissierellia root:Host-associated:Mammals:Digestive system:Fecal 1.0 +class Tissierellia root:Host-associated:Mammals:Digestive system:Fecal 2.0 class Tissierellia root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 class Tissierellia root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 class Tissierellia root:Environmental:Aquatic:Marine 1.0 class Tissierellia root:Host-associated:Mammals:Digestive system 1.0 class Tissierellia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -class Tissierellia root:Host-associated:Human 9.0 +class Tissierellia root:Host-associated:Human 10.0 class Tissierellia root:Host-associated:Plants 1.0 class Tissierellia root:Environmental:Aquatic:Estuary:Sediment 1.0 class Tissierellia root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -30691,7 +31194,7 @@ class Tissierellia root:Engineered:Wastewater:Activated Sludge 1.0 class Tissierellia root:Host-associated:Human:Skin 18.0 class Tissierellia root:Mixed 5.0 class Tissierellia root:Host-associated:Mammals 2.0 -class Tissierellia root:Engineered:Food production:Fermented beverages 3.0 +class Tissierellia root:Engineered:Food production:Fermented beverages 4.0 class Tissierellia root:Host-associated:Human:Reproductive system:Vagina 9.0 class Tissierellia root:Host-associated:Human:Digestive system:Oral 6.0 class Tissierellia root:Engineered:Food production:Dairy products 1.0 @@ -30705,6 +31208,7 @@ class Tissierellia root:Host-associated:Mammals:Digestive system:Large intestine class Tissierellia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 class Tissierellia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 class Tissierellia root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 +class Tissierellia root:Engineered:Food production:Fermented seafood 1.0 class Tissierellia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Tissierellia root:Host-associated:Animal:Digestive system 1.0 class Tissierellia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -30714,6 +31218,7 @@ class Tissierellia root:Engineered:Bioreactor:Continuous culture 1.0 class Tissierellia root:Host-associated:Human:Reproductive system:Female 1.0 class Tissierellia root:Engineered:Wastewater:Water and sludge 2.0 class Tissierellia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +class Tissierellia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Tissierellia root:Host-associated:Fish:Digestive system:Intestine 1.0 class Tissierellia root:Host-associated:Insecta 1.0 class Tissierellia root:Engineered:Built environment 9.0 @@ -30721,18 +31226,19 @@ class Tissierellia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove sw class Tissierellia root:Engineered:Biogas plant 3.0 class Tissierellia root:Engineered:Food production:Fermented vegetables 1.0 class Tissierellia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 +class Tissierellia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 class Tissierellia root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Coriobacteriia root:Environmental:Aquatic:Freshwater:Sediment 3.0 -class Coriobacteriia root:Host-associated:Mammals:Digestive system:Fecal 38.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Fecal 40.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Oral:Saliva 7.0 class Coriobacteriia root:Host-associated:Birds:Digestive system:Fecal 6.0 class Coriobacteriia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -class Coriobacteriia root:Host-associated:Human:Digestive system:Large intestine:Fecal 145.0 +class Coriobacteriia root:Host-associated:Human:Digestive system:Large intestine:Fecal 155.0 class Coriobacteriia root:Host-associated:Mammals:Digestive system 13.0 class Coriobacteriia root:Environmental:Terrestrial:Soil:Forest soil 1.0 -class Coriobacteriia root:Host-associated:Human 5.0 +class Coriobacteriia root:Host-associated:Human 6.0 class Coriobacteriia root:Environmental:Aquatic:Estuary:Sediment 1.0 -class Coriobacteriia root:Host-associated:Human:Digestive system:Large intestine 12.0 +class Coriobacteriia root:Host-associated:Human:Digestive system:Large intestine 13.0 class Coriobacteriia root:Environmental:Terrestrial:Soil:Agricultural 1.0 class Coriobacteriia root:Engineered:Bioreactor 5.0 class Coriobacteriia root:Engineered:Wastewater:Activated Sludge 1.0 @@ -30742,27 +31248,31 @@ class Coriobacteriia root:Host-associated:Human:Digestive system:Intestine 2.0 class Coriobacteriia root:Engineered:Food production:Fermented beverages 2.0 class Coriobacteriia root:Engineered:Wastewater 2.0 class Coriobacteriia root:Host-associated:Human:Reproductive system:Vagina 15.0 -class Coriobacteriia root:Host-associated:Human:Digestive system:Oral 10.0 +class Coriobacteriia root:Host-associated:Human:Digestive system:Oral 11.0 class Coriobacteriia root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Coriobacteriia root:Host-associated:Plants:Rhizosphere 1.0 class Coriobacteriia root:Environmental:Terrestrial:Soil 3.0 class Coriobacteriia root:Environmental:Aquatic:Marine:Sediment 3.0 -class Coriobacteriia root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +class Coriobacteriia root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +class Coriobacteriia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Coriobacteriia root:Environmental:Aquatic:Sediment 5.0 -class Coriobacteriia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 16.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Midgut 2.0 +class Coriobacteriia root:Engineered:Lab enrichment 1.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 class Coriobacteriia root:Host-associated:Birds:Digestive system:Ceca 4.0 class Coriobacteriia root:Host-associated:Human:Digestive system 24.0 class Coriobacteriia root:Engineered:Solid waste:Composting 1.0 class Coriobacteriia root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 -class Coriobacteriia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 30.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 31.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 class Coriobacteriia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 class Coriobacteriia root:Engineered:Lab enrichment:Defined media 7.0 class Coriobacteriia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 class Coriobacteriia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Coriobacteriia root:Host-associated:Mammals:Digestive system:Large intestine 7.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Large intestine 8.0 class Coriobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 +class Coriobacteriia root:Engineered:Food production:Fermented seafood 1.0 class Coriobacteriia root:Environmental:Aquatic:Freshwater:Lentic 1.0 class Coriobacteriia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Coriobacteriia root:Host-associated:Animal:Digestive system 4.0 @@ -30776,7 +31286,6 @@ class Coriobacteriia root:Host-associated:Human:Digestive system:Large intestine class Coriobacteriia root:Environmental:Terrestrial 1.0 class Coriobacteriia root:Host-associated:Insecta 1.0 class Coriobacteriia root:Host-associated:Birds:Digestive system 3.0 -class Coriobacteriia root:Engineered:Lab enrichment 1.0 class Coriobacteriia root:Host-associated:Animal:Digestive system:Fecal 3.0 class Coriobacteriia root:Engineered:Biogas plant 1.0 class Coriobacteriia root:Engineered:Food production:Fermented vegetables 1.0 @@ -30784,11 +31293,11 @@ class Coriobacteriia root:Host-associated:Reptile 1.0 class Coriobacteriia root:Host-associated:Mammals:Respiratory system 1.0 class Coriobacteriia root:Host-associated:Birds 1.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 -class Coriobacteriia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Oral:Throat 1.0 class Coriobacteriia root:Host-associated:Human:Respiratory system 1.0 class Coriobacteriia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 class Coriobacteriia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +class Coriobacteriia root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Coriobacteriia root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Coriobacteriia root:Host-associated:Human:Circulatory system:Blood 1.0 class Coriobacteriia root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -30797,11 +31306,11 @@ class Coriobacteriia root:Host-associated:Mammals:Excretory system 1.0 class Coriobacteriia root:Host-associated:Mammals:Milk 1.0 class Coriobacteriia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 class Coriobacteriia root:Engineered:Solid waste:Solid animal waste 1.0 -class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Sediment 3.0 +class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Sediment 4.0 class Dehalococcoidia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -class Dehalococcoidia root:Environmental:Aquatic:Marine 93.0 +class Dehalococcoidia root:Environmental:Aquatic:Marine 94.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Oceanic:Sediment 10.0 -class Dehalococcoidia root:Environmental:Aquatic:Marine:Oceanic 27.0 +class Dehalococcoidia root:Environmental:Aquatic:Marine:Oceanic 28.0 class Dehalococcoidia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 6.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 class Dehalococcoidia root:Environmental:Aquatic:Estuary:Sediment 2.0 @@ -30813,7 +31322,7 @@ class Dehalococcoidia root:Mixed 4.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 class Dehalococcoidia root:Environmental:Terrestrial:Soil 1.0 -class Dehalococcoidia root:Environmental:Aquatic:Marine:Sediment 61.0 +class Dehalococcoidia root:Environmental:Aquatic:Marine:Sediment 64.0 class Dehalococcoidia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Dehalococcoidia root:Environmental:Aquatic:Sediment 4.0 class Dehalococcoidia root:Host-associated:Porifera 10.0 @@ -30836,21 +31345,23 @@ class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Marginal Sea 3.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Pelagic 2.0 +class Dehalococcoidia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Dehalococcoidia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 -class Dehalococcoidia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 3.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 -class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +class Dehalococcoidia root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 3.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 class Dehalococcoidia root 1.0 class Dehalococcoidia root:Environmental:Aquatic:Marine:Wetlands 1.0 order Selenomonadales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Selenomonadales root:Host-associated:Mammals:Digestive system:Fecal 11.0 +order Selenomonadales root:Host-associated:Mammals:Digestive system:Fecal 12.0 order Selenomonadales root:Host-associated:Birds:Digestive system:Fecal 2.0 -order Selenomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 +order Selenomonadales root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 +order Selenomonadales root:Environmental:Aquatic:Marine 1.0 order Selenomonadales root:Host-associated:Mammals:Digestive system 3.0 order Selenomonadales root:Host-associated:Plants 1.0 order Selenomonadales root:Host-associated:Human:Digestive system:Large intestine 2.0 @@ -30862,8 +31373,10 @@ order Selenomonadales root:Engineered:Wastewater 1.0 order Selenomonadales root:Host-associated:Human:Digestive system:Oral 6.0 order Selenomonadales root:Environmental:Terrestrial:Soil 1.0 order Selenomonadales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Selenomonadales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Selenomonadales root:Environmental:Aquatic:Sediment 1.0 order Selenomonadales root:Engineered:Biogas plant:Wet fermentation 2.0 +order Selenomonadales root:Engineered:Lab enrichment 1.0 order Selenomonadales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 order Selenomonadales root:Host-associated:Birds:Digestive system:Ceca 2.0 order Selenomonadales root:Host-associated:Human:Digestive system 7.0 @@ -30873,12 +31386,12 @@ order Selenomonadales root:Host-associated:Human:Digestive system:Oral:Subgingiv order Selenomonadales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 order Selenomonadales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 4.0 order Selenomonadales root:Host-associated:Animal:Digestive system 2.0 -order Selenomonadales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order Selenomonadales root:Engineered:Wastewater:Water and sludge 1.0 order Selenomonadales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Selenomonadales root:Host-associated:Birds:Digestive system 2.0 -order Selenomonadales root:Engineered:Lab enrichment 1.0 order Selenomonadales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Selenomonadales root:Host-associated:Animal:Digestive system:Fecal 2.0 +order Selenomonadales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Selenomonadales root:Host-associated:Human:Circulatory system 1.0 family Sporomusaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Sporomusaceae root:Engineered:Bioreactor 1.0 @@ -30923,11 +31436,12 @@ family Paenibacillaceae root:Engineered:Food production:Fermented beverages 1.0 family Paenibacillaceae root:Engineered:Wastewater 2.0 family Paenibacillaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Paenibacillaceae root:Engineered:Food production:Dairy products 3.0 -family Paenibacillaceae root:Host-associated:Plants:Rhizosphere 2.0 -family Paenibacillaceae root:Environmental:Terrestrial:Soil 18.0 +family Paenibacillaceae root:Host-associated:Plants:Rhizosphere 3.0 +family Paenibacillaceae root:Environmental:Terrestrial:Soil 19.0 family Paenibacillaceae root:Environmental:Aquatic:Marine:Sediment 4.0 family Paenibacillaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Paenibacillaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +family Paenibacillaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Paenibacillaceae root:Environmental:Aquatic:Thermal springs 1.0 family Paenibacillaceae root:Engineered:Solid waste:Composting 11.0 family Paenibacillaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -30936,7 +31450,6 @@ family Paenibacillaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Paenibacillaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Paenibacillaceae root:Host-associated:Plants:Root 1.0 family Paenibacillaceae root:Engineered:Food production 1.0 -family Paenibacillaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Paenibacillaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Paenibacillaceae root:Host-associated 1.0 family Paenibacillaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -30944,7 +31457,7 @@ family Paenibacillaceae root:Environmental:Aquatic:Marine:Brackish 3.0 family Paenibacillaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Paenibacillaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Paenibacillaceae root:Engineered:Lab Synthesis:Genetic cross 1.0 -family Paenibacillaceae root:Engineered:Built environment 3.0 +family Paenibacillaceae root:Engineered:Built environment 4.0 family Paenibacillaceae root:Engineered:Food production:Fermented vegetables 1.0 family Paenibacillaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Paenibacillaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -31026,6 +31539,7 @@ species Acidobacteria bacterium RBG 13 68 16 root:Engineered:Wastewater:Activate species Acidobacteria bacterium RBG 13 68 16 root:Environmental:Aquatic:Sediment 1.0 species Acidobacteria bacterium RBG 13 68 16 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 species Acidobacteria bacterium RBG 13 68 16 root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +species Acidobacteria bacterium RBG 13 68 16 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species denitrifying bacterium enrichment culture clone NOB 2 A10 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species denitrifying bacterium enrichment culture clone NOB 2 A10 root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 species Elusimicrobia bacterium RIFCSPHIGHO2 02 FULL 61 10 root:Environmental:Aquatic:Freshwater:Sediment 3.0 @@ -31054,6 +31568,7 @@ species Chloroflexi bacterium RBG 16 58 14 root:Environmental:Terrestrial:Deep s species Chloroflexi bacterium RBG 16 58 14 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 species Chloroflexi bacterium RBG 16 58 14 root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Chloroflexi bacterium RBG 16 58 14 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +species Chloroflexi bacterium RBG 16 58 14 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Acidobacteria bacterium RBG 16 70 10 root:Environmental:Aquatic:Freshwater:Sediment 2.0 species Acidobacteria bacterium RBG 16 70 10 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 species Acidobacteria bacterium RBG 16 70 10 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -31078,7 +31593,7 @@ class Ignavibacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt mars class Ignavibacteria root:Environmental:Aquatic:Estuary:Sediment 2.0 class Ignavibacteria root:Host-associated:Human:Digestive system:Large intestine 1.0 class Ignavibacteria root:Engineered:Bioreactor 8.0 -class Ignavibacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +class Ignavibacteria root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 class Ignavibacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 5.0 class Ignavibacteria root:Engineered:Wastewater:Activated Sludge 8.0 class Ignavibacteria root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -31100,6 +31615,7 @@ class Ignavibacteria root:Host-associated:Insecta:Digestive system 1.0 class Ignavibacteria root:Engineered:Bioreactor:Continuous culture 1.0 class Ignavibacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 class Ignavibacteria root:Environmental:Aquatic:Thermal springs:Sediment 3.0 +class Ignavibacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class Ignavibacteria root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Ignavibacteria root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Ignavibacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -31112,7 +31628,7 @@ class Ignavibacteria root:Host-associated:Microbial 1.0 class Ignavibacteria root:Environmental:Aquatic:Marine:Volcanic 1.0 class Ignavibacteria root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 order Nitrosopumilales root:Environmental:Aquatic:Freshwater:Sediment 3.0 -order Nitrosopumilales root:Environmental:Aquatic:Marine 93.0 +order Nitrosopumilales root:Environmental:Aquatic:Marine 99.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Oceanic 27.0 order Nitrosopumilales root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -31121,9 +31637,9 @@ order Nitrosopumilales root:Environmental:Aquatic:Estuary:Sediment 5.0 order Nitrosopumilales root:Engineered:Bioreactor 1.0 order Nitrosopumilales root:Mixed 1.0 order Nitrosopumilales root:Engineered:Food production:Fermented beverages 1.0 -order Nitrosopumilales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 +order Nitrosopumilales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 -order Nitrosopumilales root:Environmental:Aquatic:Marine:Sediment 58.0 +order Nitrosopumilales root:Environmental:Aquatic:Marine:Sediment 60.0 order Nitrosopumilales root:Environmental:Aquatic:Sediment 1.0 order Nitrosopumilales root:Host-associated:Porifera 10.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 @@ -31144,6 +31660,7 @@ order Nitrosopumilales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Marginal Sea 1.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Pelagic 2.0 +order Nitrosopumilales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 order Nitrosopumilales root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 @@ -31157,7 +31674,7 @@ order Nitrosopumilales root:Environmental:Aquatic:Marine:Hydrothermal vents:Micr order Nitrosopumilales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 order Nitrosopumilales root 1.0 family Nitrosopumilaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 -family Nitrosopumilaceae root:Environmental:Aquatic:Marine 104.0 +family Nitrosopumilaceae root:Environmental:Aquatic:Marine 109.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Oceanic 30.0 family Nitrosopumilaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -31166,10 +31683,10 @@ family Nitrosopumilaceae root:Environmental:Aquatic:Estuary:Sediment 6.0 family Nitrosopumilaceae root:Engineered:Bioreactor 1.0 family Nitrosopumilaceae root:Mixed 2.0 family Nitrosopumilaceae root:Engineered:Food production:Fermented beverages 1.0 -family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 +family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 family Nitrosopumilaceae root:Environmental:Terrestrial:Soil 1.0 -family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Sediment 61.0 +family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Sediment 63.0 family Nitrosopumilaceae root:Environmental:Aquatic:Sediment 1.0 family Nitrosopumilaceae root:Host-associated:Porifera 10.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 @@ -31187,10 +31704,11 @@ family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contamina family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Nitrosopumilaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Pelagic 2.0 -family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 +family Nitrosopumilaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Nitrosopumilaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 family Nitrosopumilaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 @@ -31260,7 +31778,7 @@ species beta proteobacterium JGI 0001003-N18 root:Host-associated:Plants 1.0 species beta proteobacterium JGI 0001003-N18 root:Environmental:Terrestrial:Soil:Agricultural 2.0 species beta proteobacterium JGI 0001003-N18 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species beta proteobacterium JGI 0001003-N18 root:Environmental:Terrestrial:Soil:Permafrost 1.0 -species beta proteobacterium JGI 0001003-N18 root:Mixed 2.0 +species beta proteobacterium JGI 0001003-N18 root:Mixed 3.0 species beta proteobacterium JGI 0001003-N18 root:Environmental:Terrestrial:Soil:Contaminated 1.0 species beta proteobacterium JGI 0001003-N18 root:Host-associated:Plants:Rhizosphere 13.0 species beta proteobacterium JGI 0001003-N18 root:Environmental:Terrestrial:Soil 5.0 @@ -31289,6 +31807,7 @@ species Candidatus Nitrosotalea devanaterra root:Host-associated:Plants:Rhizosph species Candidatus Nitrosotalea devanaterra root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 species Candidatus Nitrosotalea devanaterra root:Environmental:Terrestrial:Soil 2.0 species Candidatus Nitrosotalea devanaterra root:Environmental:Aquatic:Marine:Sediment 1.0 +species Candidatus Nitrosotalea devanaterra root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Candidatus Nitrosotalea devanaterra root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Candidatus Nitrosotalea devanaterra root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Candidatus Nitrosotalea devanaterra root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -31396,7 +31915,7 @@ genus Arenimonas root:Environmental:Aquatic:Freshwater 1.0 genus Arenimonas root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Arenimonas root:Engineered:Wastewater:Industrial wastewater 1.0 genus Arenimonas root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -genus Arenimonas root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +genus Arenimonas root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 genus Arenimonas root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Arenimonas root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 genus Arenimonas root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -31421,10 +31940,10 @@ species bacterium WX65 root:Environmental:Terrestrial:Soil:Contaminated 1.0 species bacterium WX65 root:Host-associated:Plants:Rhizosphere 1.0 species bacterium WX65 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species bacterium WX65 root:Environmental:Terrestrial:Soil 8.0 +species bacterium WX65 root:Engineered:Lab enrichment 1.0 species bacterium WX65 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 species bacterium WX65 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species bacterium WX65 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -species bacterium WX65 root:Engineered:Lab enrichment 1.0 species bacterium WX65 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 species bacterium WX65 root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 species iron-reducing bacterium enrichment culture clone FEA 2 H5 root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -31436,7 +31955,7 @@ class Oligoflexia root:Environmental:Aquatic:Marine:Oceanic 9.0 class Oligoflexia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 class Oligoflexia root:Host-associated:Plants 3.0 class Oligoflexia root:Engineered:Bioreactor 1.0 -class Oligoflexia root:Engineered:Wastewater:Activated Sludge 1.0 +class Oligoflexia root:Engineered:Wastewater:Activated Sludge 2.0 class Oligoflexia root:Mixed 1.0 class Oligoflexia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Oligoflexia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -31457,6 +31976,7 @@ class Oligoflexia root:Host-associated:Insecta:Digestive system 1.0 class Oligoflexia root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 class Oligoflexia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 class Oligoflexia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +class Oligoflexia root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Oligoflexia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Oligoflexia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 class Oligoflexia root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 @@ -31466,7 +31986,7 @@ class Oligoflexia root:Host-associated:Cnidaria 1.0 class Oligoflexia root:Host-associated:Algae:Brown Algae 1.0 order Bdellovibrionales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Bdellovibrionales root:Engineered:Bioreactor 1.0 -order Bdellovibrionales root:Engineered:Wastewater:Activated Sludge 1.0 +order Bdellovibrionales root:Engineered:Wastewater:Activated Sludge 2.0 order Bdellovibrionales root:Mixed 1.0 order Bdellovibrionales root:Environmental:Terrestrial:Soil 1.0 order Bdellovibrionales root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -31477,7 +31997,7 @@ order Bdellovibrionales root:Host-associated:Spiralia 1.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Moraxellaceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 family Moraxellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -family Moraxellaceae root:Environmental:Aquatic:Marine 45.0 +family Moraxellaceae root:Environmental:Aquatic:Marine 54.0 family Moraxellaceae root:Host-associated:Fish 4.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Oceanic 8.0 @@ -31497,7 +32017,7 @@ family Moraxellaceae root:Host-associated:Human:Skin 18.0 family Moraxellaceae root:Mixed 11.0 family Moraxellaceae root:Host-associated:Mammals 7.0 family Moraxellaceae root:Host-associated:Amphibia 4.0 -family Moraxellaceae root:Engineered:Food production:Fermented beverages 2.0 +family Moraxellaceae root:Engineered:Food production:Fermented beverages 3.0 family Moraxellaceae root:Engineered:Wastewater 8.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Moraxellaceae root:Host-associated:Human:Digestive system:Oral 1.0 @@ -31507,16 +32027,18 @@ family Moraxellaceae root:Host-associated:Plants:Phylloplane 4.0 family Moraxellaceae root:Host-associated:Plants:Rhizosphere 3.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 family Moraxellaceae root:Environmental:Terrestrial:Soil 18.0 -family Moraxellaceae root:Environmental:Aquatic:Marine:Sediment 23.0 +family Moraxellaceae root:Environmental:Aquatic:Marine:Sediment 24.0 family Moraxellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Lotic 3.0 family Moraxellaceae root:Environmental:Aquatic:Sediment 4.0 family Moraxellaceae root:Environmental:Aquatic 5.0 family Moraxellaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Moraxellaceae root:Host-associated:Porifera 4.0 +family Moraxellaceae root:Engineered:Lab enrichment 3.0 family Moraxellaceae root:Environmental:Terrestrial:Soil:Wetlands 2.0 family Moraxellaceae root:Engineered:Lab Synthesis 1.0 family Moraxellaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 +family Moraxellaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Moraxellaceae root:Host-associated:Human:Digestive system 2.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater 4.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 @@ -31537,7 +32059,6 @@ family Moraxellaceae root:Engineered:Food production 9.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Neritic zone 1.0 family Moraxellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Moraxellaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Moraxellaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 family Moraxellaceae root:Engineered:Food production:Fermented seafood 2.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -31549,28 +32070,28 @@ family Moraxellaceae root:Engineered:Wastewater:Industrial wastewater 4.0 family Moraxellaceae root:Host-associated:Insecta:Digestive system 5.0 family Moraxellaceae root:Host-associated 2.0 family Moraxellaceae root:Host-associated:Mollusca 1.0 +family Moraxellaceae root:Host-associated:Fish:Digestive system 1.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 family Moraxellaceae root:Host-associated:Fish:Digestive system:Foregut 2.0 family Moraxellaceae root:Engineered:Bioreactor:Continuous culture 3.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Moraxellaceae root:Engineered:Solid waste 1.0 -family Moraxellaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 +family Moraxellaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 3.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -family Moraxellaceae root:Environmental:Aquatic:Freshwater:Groundwater 5.0 +family Moraxellaceae root:Environmental:Aquatic:Freshwater:Groundwater 6.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 -family Moraxellaceae root:Engineered:Wastewater:Water and sludge 7.0 +family Moraxellaceae root:Engineered:Wastewater:Water and sludge 8.0 family Moraxellaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Moraxellaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Moraxellaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 family Moraxellaceae root:Host-associated:Reptile:Oral cavity 1.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Ice 3.0 -family Moraxellaceae root:Host-associated:Insecta 4.0 +family Moraxellaceae root:Host-associated:Insecta 5.0 family Moraxellaceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 family Moraxellaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -family Moraxellaceae root:Engineered:Built environment 4.0 -family Moraxellaceae root:Engineered:Lab enrichment 3.0 +family Moraxellaceae root:Engineered:Built environment 5.0 family Moraxellaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Moraxellaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Moraxellaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -31624,10 +32145,11 @@ family Thiobacillaceae root:Engineered:Wastewater:Industrial wastewater 2.0 family Thiobacillaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Thiobacillaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Thiobacillaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -family Thiobacillaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Thiobacillaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 family Bdellovibrionaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Bdellovibrionaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Bdellovibrionaceae root:Engineered:Bioreactor 1.0 +family Bdellovibrionaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Bdellovibrionaceae root:Mixed 1.0 family Bdellovibrionaceae root:Environmental:Terrestrial:Soil 1.0 family Bdellovibrionaceae root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -31639,8 +32161,9 @@ genus Bdellovibrio root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Bdellovibrio root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Bdellovibrio root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Bdellovibrio root:Engineered:Bioreactor 1.0 -genus Bdellovibrio root:Engineered:Wastewater:Activated Sludge 1.0 +genus Bdellovibrio root:Engineered:Wastewater:Activated Sludge 2.0 genus Bdellovibrio root:Mixed 1.0 genus Bdellovibrio root:Engineered:Wastewater 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 @@ -31650,6 +32173,7 @@ genus Bdellovibrio root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Bdellovibrio root:Environmental:Terrestrial:Soil 6.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Sediment 1.0 genus Bdellovibrio root:Host-associated:Porifera 4.0 +genus Bdellovibrio root:Engineered:Lab enrichment 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Bdellovibrio root:Host-associated:Algae:Red algae 1.0 @@ -31659,7 +32183,6 @@ genus Bdellovibrio root:Environmental:Aquatic:Marine:Brackish 1.0 genus Bdellovibrio root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Bdellovibrio root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Bdellovibrio root:Host-associated:Insecta 1.0 -genus Bdellovibrio root:Engineered:Lab enrichment 1.0 genus Sulfuricurvum root:Environmental:Aquatic:Freshwater:Sediment 7.0 genus Sulfuricurvum root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Sulfuricurvum root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -31701,6 +32224,7 @@ species Bdellovibrio bacteriovorus root:Host-associated:Plants 2.0 species Bdellovibrio bacteriovorus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species Bdellovibrio bacteriovorus root:Host-associated:Plants:Rhizosphere 1.0 species Bdellovibrio bacteriovorus root:Environmental:Terrestrial:Soil 2.0 +species Bdellovibrio bacteriovorus root:Environmental:Aquatic:Marine:Sediment 1.0 species Bdellovibrio bacteriovorus root:Engineered:Solid waste:Composting 1.0 species Bdellovibrio bacteriovorus root:Host-associated:Insecta 1.0 species Bdellovibrio bacteriovorus root:Engineered:Built environment 2.0 @@ -31723,47 +32247,50 @@ phylum Streptophyta root:Environmental:Aquatic:Freshwater:Sediment 2.0 phylum Streptophyta root:Host-associated:Mammals:Digestive system:Fecal 2.0 phylum Streptophyta root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 phylum Streptophyta root:Host-associated:Birds:Digestive system:Fecal 2.0 -phylum Streptophyta root:Host-associated:Human:Digestive system:Large intestine:Fecal 27.0 -phylum Streptophyta root:Environmental:Aquatic:Marine 35.0 +phylum Streptophyta root:Host-associated:Human:Digestive system:Large intestine:Fecal 31.0 +phylum Streptophyta root:Environmental:Aquatic:Marine 37.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -phylum Streptophyta root:Environmental:Aquatic:Marine:Oceanic 5.0 +phylum Streptophyta root:Environmental:Aquatic:Marine:Oceanic 6.0 phylum Streptophyta root:Host-associated:Mammals:Digestive system 4.0 -phylum Streptophyta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +phylum Streptophyta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 phylum Streptophyta root:Environmental:Terrestrial:Geologic 1.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Forest soil 2.0 phylum Streptophyta root:Host-associated:Human 2.0 -phylum Streptophyta root:Host-associated:Plants 56.0 +phylum Streptophyta root:Host-associated:Plants 57.0 phylum Streptophyta root:Environmental:Aquatic:Estuary:Sediment 2.0 phylum Streptophyta root:Host-associated:Human:Digestive system:Large intestine 3.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Agricultural 1.0 phylum Streptophyta root:Engineered:Bioreactor 32.0 -phylum Streptophyta root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +phylum Streptophyta root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 3.0 phylum Streptophyta root:Engineered:Wastewater:Activated Sludge 3.0 phylum Streptophyta root:Host-associated:Human:Skin 12.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Permafrost 2.0 phylum Streptophyta root:Mixed 4.0 -phylum Streptophyta root:Host-associated:Mammals 6.0 +phylum Streptophyta root:Host-associated:Mammals 7.0 phylum Streptophyta root:Host-associated:Amphibia 3.0 -phylum Streptophyta root:Host-associated:Human:Digestive system:Intestine 1.0 -phylum Streptophyta root:Engineered:Food production:Fermented beverages 3.0 +phylum Streptophyta root:Host-associated:Human:Digestive system:Intestine 2.0 +phylum Streptophyta root:Engineered:Food production:Fermented beverages 4.0 phylum Streptophyta root:Engineered:Wastewater 5.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 phylum Streptophyta root:Host-associated:Human:Digestive system:Oral 1.0 +phylum Streptophyta root:Engineered:Food production:Dairy products 1.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Streptophyta root:Host-associated:Plants:Phylloplane 8.0 phylum Streptophyta root:Host-associated:Plants:Rhizosphere 3.0 -phylum Streptophyta root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -phylum Streptophyta root:Environmental:Terrestrial:Soil 10.0 +phylum Streptophyta root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 +phylum Streptophyta root:Environmental:Terrestrial:Soil 12.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Sediment 11.0 phylum Streptophyta root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 phylum Streptophyta root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Streptophyta root:Environmental:Aquatic:Sediment 1.0 phylum Streptophyta root:Environmental:Aquatic 1.0 +phylum Streptophyta root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Streptophyta root:Engineered:Biogas plant:Wet fermentation 2.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Grasslands 4.0 phylum Streptophyta root:Host-associated:Birds:Digestive system:Ceca 1.0 phylum Streptophyta root:Host-associated:Mammals:Digestive system:Stomach 1.0 +phylum Streptophyta root:Host-associated:Plants:Rhizosphere:Soil 2.0 phylum Streptophyta root:Host-associated:Human:Digestive system 10.0 phylum Streptophyta root:Environmental:Aquatic:Freshwater 1.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -31780,8 +32307,7 @@ phylum Streptophyta root:Host-associated:Plants:Root 5.0 phylum Streptophyta root:Engineered:Food production 4.0 phylum Streptophyta root:Environmental:Terrestrial:Deep subsurface 2.0 phylum Streptophyta root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -phylum Streptophyta root:Host-associated:Plants:Rhizosphere:Soil 1.0 -phylum Streptophyta root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +phylum Streptophyta root:Host-associated:Mammals:Digestive system:Large intestine 3.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Streptophyta root:Environmental:Aquatic:Estuary 2.0 phylum Streptophyta root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -31795,16 +32321,16 @@ phylum Streptophyta root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2 phylum Streptophyta root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Streptophyta root:Engineered:Wastewater:Water and sludge 3.0 +phylum Streptophyta root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 phylum Streptophyta root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Streptophyta root:Environmental:Terrestrial 1.0 phylum Streptophyta root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Streptophyta root:Host-associated:Reptile:Oral cavity 1.0 -phylum Streptophyta root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 phylum Streptophyta root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Streptophyta root:Host-associated:Insecta 4.0 phylum Streptophyta root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -phylum Streptophyta root:Engineered:Built environment 6.0 +phylum Streptophyta root:Engineered:Built environment 7.0 phylum Streptophyta root:Host-associated:Birds:Digestive system 2.0 phylum Streptophyta root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 phylum Streptophyta root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -31818,13 +32344,13 @@ phylum Streptophyta root:Host-associated:Birds 2.0 phylum Streptophyta root:Host-associated:Animal 1.0 phylum Streptophyta root:Engineered 1.0 phylum Streptophyta root:Environmental:Aquatic:Aquaculture 1.0 -phylum Streptophyta root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Streptophyta root:Environmental:Air 1.0 phylum Streptophyta root:Host-associated:Arthropoda 1.0 phylum Streptophyta root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 phylum Streptophyta root:Host-associated:Fungi 1.0 phylum Streptophyta root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 phylum Streptophyta root:Host-associated:Mammals:Skin 1.0 +phylum Streptophyta root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 phylum Streptophyta root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 phylum Streptophyta root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 phylum Streptophyta root:Host-associated:Human:Circulatory system 3.0 @@ -31833,10 +32359,11 @@ phylum Streptophyta root:Environmental:Terrestrial:Soil:Loam 1.0 phylum Streptophyta root:Host-associated:Microbial 1.0 phylum Streptophyta root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 phylum Streptophyta root:Host-associated:Microbial:Bacteria 1.0 +phylum Streptophyta root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 phylum Elusimicrobia root:Environmental:Aquatic:Freshwater:Sediment 2.0 phylum Elusimicrobia root:Host-associated:Mammals:Digestive system:Fecal 4.0 phylum Elusimicrobia root:Host-associated:Birds:Digestive system:Fecal 4.0 -phylum Elusimicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 +phylum Elusimicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 phylum Elusimicrobia root:Environmental:Aquatic:Marine 1.0 phylum Elusimicrobia root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 phylum Elusimicrobia root:Host-associated:Mammals:Digestive system 4.0 @@ -31859,10 +32386,11 @@ phylum Elusimicrobia root:Engineered:Biogas plant:Wet fermentation 1.0 phylum Elusimicrobia root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 phylum Elusimicrobia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 phylum Elusimicrobia root:Host-associated:Birds:Digestive system:Ceca 1.0 +phylum Elusimicrobia root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Elusimicrobia root:Host-associated:Human:Digestive system 5.0 phylum Elusimicrobia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 phylum Elusimicrobia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 -phylum Elusimicrobia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +phylum Elusimicrobia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 phylum Elusimicrobia root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Elusimicrobia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 phylum Elusimicrobia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -31876,47 +32404,64 @@ phylum Elusimicrobia root:Environmental:Aquatic:Freshwater:Ice 1.0 phylum Elusimicrobia root:Host-associated:Birds:Digestive system 1.0 phylum Elusimicrobia root:Engineered 1.0 phylum Elusimicrobia root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +phylum Elusimicrobia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 phylum Elusimicrobia root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 phylum Elusimicrobia root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 class Magnoliopsida root:Environmental:Aquatic:Freshwater:Sediment 2.0 class Magnoliopsida root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -class Magnoliopsida root:Environmental:Aquatic:Marine 2.0 +class Magnoliopsida root:Environmental:Aquatic:Marine 3.0 class Magnoliopsida root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -class Magnoliopsida root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +class Magnoliopsida root:Environmental:Aquatic:Marine:Oceanic 1.0 +class Magnoliopsida root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 class Magnoliopsida root:Environmental:Terrestrial:Soil:Forest soil 1.0 +class Magnoliopsida root:Host-associated:Plants 1.0 +class Magnoliopsida root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Magnoliopsida root:Host-associated:Human:Skin 1.0 class Magnoliopsida root:Mixed 1.0 +class Magnoliopsida root:Host-associated:Human:Digestive system:Intestine 1.0 class Magnoliopsida root:Engineered:Food production:Fermented beverages 1.0 +class Magnoliopsida root:Engineered:Food production:Dairy products 1.0 class Magnoliopsida root:Host-associated:Plants:Rhizosphere 1.0 +class Magnoliopsida root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Magnoliopsida root:Environmental:Terrestrial:Soil 1.0 +class Magnoliopsida root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Magnoliopsida root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Magnoliopsida root:Host-associated:Human:Digestive system 1.0 class Magnoliopsida root:Environmental:Aquatic:Freshwater 1.0 class Magnoliopsida root:Environmental:Terrestrial:Deep subsurface 1.0 -class Magnoliopsida root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Magnoliopsida root:Engineered:Wastewater:Water and sludge 1.0 -class Magnoliopsida root:Host-associated:Reptile:Oral cavity 1.0 class Magnoliopsida root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +class Magnoliopsida root:Host-associated:Reptile:Oral cavity 1.0 +class Magnoliopsida root:Engineered:Built environment 1.0 class Magnoliopsida root:Host-associated:Birds:Digestive system 1.0 class Magnoliopsida root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +class Magnoliopsida root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +class Magnoliopsida root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Fabales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Fabales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Fabales root:Host-associated:Plants 2.0 +order Fabales root:Host-associated:Mammals 1.0 order Fabales root:Engineered:Food production:Fermented beverages 1.0 +order Fabales root:Engineered:Food production:Dairy products 1.0 +order Fabales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Fabales root:Environmental:Terrestrial:Soil 1.0 order Fabales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Fabales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Fabales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Fabales root:Host-associated:Insecta:Digestive system 1.0 -order Fabales root:Host-associated:Reptile:Oral cavity 1.0 order Fabales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +order Fabales root:Host-associated:Reptile:Oral cavity 1.0 order Fabales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Fabales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Fabales root:Host-associated:Birds 1.0 order Blastocatellales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Blastocatellales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -order Blastocatellales root:Host-associated:Plants:Rhizosphere 1.0 +order Blastocatellales root:Host-associated:Plants:Rhizosphere 3.0 +order Blastocatellales root:Environmental:Terrestrial:Soil 1.0 order Blastocatellales root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Blastocatellaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Blastocatellaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Blastocatellaceae root:Host-associated:Plants:Rhizosphere 1.0 family Chaetonotidae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Chaetonotidae root:Environmental:Aquatic:Marine 1.0 family Chaetonotidae root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -31925,11 +32470,14 @@ family Chaetonotidae root:Environmental:Aquatic:Marine:Sediment 2.0 family Fabaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Fabaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Fabaceae root:Host-associated:Plants 1.0 +family Fabaceae root:Host-associated:Mammals 1.0 +family Fabaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Fabaceae root:Environmental:Terrestrial:Soil 1.0 family Fabaceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Fabaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Fabaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Fabaceae root:Host-associated:Reptile:Oral cavity 1.0 family Fabaceae root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 +family Fabaceae root:Host-associated:Reptile:Oral cavity 1.0 family Fabaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Fabaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Fabaceae root:Host-associated:Birds 1.0 @@ -31939,7 +32487,7 @@ family Azonexaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh family Azonexaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Azonexaceae root:Engineered:Bioreactor 3.0 family Azonexaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 -family Azonexaceae root:Engineered:Wastewater:Activated Sludge 5.0 +family Azonexaceae root:Engineered:Wastewater:Activated Sludge 6.0 family Azonexaceae root:Engineered:Wastewater 2.0 family Azonexaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Azonexaceae root:Environmental:Aquatic:Sediment 2.0 @@ -31957,6 +32505,7 @@ family Anaeromyxobacteraceae root:Engineered:Lab enrichment:Defined media 3.0 family Anaeromyxobacteraceae root:Host-associated:Plants:Root 1.0 genus Candidatus Nitrosotenuis root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Candidatus Nitrosotenuis root:Environmental:Aquatic:Marine 1.0 +genus Candidatus Nitrosotenuis root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Candidatus Nitrosotenuis root:Environmental:Terrestrial:Deep subsurface 1.0 genus Candidatus Nitrosotenuis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Lepidodermella root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -31991,6 +32540,7 @@ genus Nitzschia root:Environmental:Aquatic:Estuary 2.0 genus Nitrososphaera root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Nitrososphaera root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Nitrososphaera root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Nitrososphaera root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Nitrososphaera root:Environmental:Terrestrial:Soil:Clay 1.0 genus Nitrososphaera root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 species Ammopiptanthus mongolicus root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -32002,17 +32552,22 @@ species Ammopiptanthus mongolicus root:Host-associated:Plants 2.0 species Ammopiptanthus mongolicus root:Engineered:Bioreactor 2.0 species Ammopiptanthus mongolicus root:Host-associated:Human:Skin 1.0 species Ammopiptanthus mongolicus root:Mixed 1.0 -species Ammopiptanthus mongolicus root:Engineered:Food production:Fermented beverages 1.0 +species Ammopiptanthus mongolicus root:Engineered:Food production:Fermented beverages 2.0 +species Ammopiptanthus mongolicus root:Engineered:Food production:Dairy products 1.0 species Ammopiptanthus mongolicus root:Environmental:Terrestrial:Soil:Contaminated 1.0 -species Ammopiptanthus mongolicus root:Environmental:Terrestrial:Soil 3.0 +species Ammopiptanthus mongolicus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Ammopiptanthus mongolicus root:Environmental:Terrestrial:Soil 4.0 species Ammopiptanthus mongolicus root:Environmental:Aquatic:Marine:Sediment 1.0 +species Ammopiptanthus mongolicus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Ammopiptanthus mongolicus root:Environmental:Terrestrial:Deep subsurface 2.0 -species Ammopiptanthus mongolicus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Ammopiptanthus mongolicus root:Host-associated:Fish:Digestive system 1.0 species Ammopiptanthus mongolicus root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +species Ammopiptanthus mongolicus root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 species Ammopiptanthus mongolicus root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Ammopiptanthus mongolicus root:Host-associated:Reptile:Oral cavity 1.0 -species Ammopiptanthus mongolicus root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 species Ammopiptanthus mongolicus root:Host-associated:Fish:Digestive system:Intestine 1.0 +species Ammopiptanthus mongolicus root:Host-associated:Insecta 1.0 +species Ammopiptanthus mongolicus root:Engineered:Built environment 1.0 species Ammopiptanthus mongolicus root:Host-associated:Birds:Digestive system 1.0 species Azonexus hydrophilus root:Environmental:Aquatic:Freshwater:Sediment 2.0 species Azonexus hydrophilus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -32027,38 +32582,42 @@ species Nitzschia sp. ChengR-2013 root:Environmental:Aquatic:Marine:Intertidal z species Pelobacter propionicus root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Pelobacter propionicus root:Engineered:Wastewater:Activated Sludge 1.0 class Erysipelotrichia root:Environmental:Aquatic:Freshwater:Sediment 2.0 -class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Fecal 45.0 +class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Fecal 47.0 class Erysipelotrichia root:Host-associated:Human:Digestive system:Oral:Saliva 11.0 class Erysipelotrichia root:Host-associated:Birds:Digestive system:Fecal 6.0 -class Erysipelotrichia root:Host-associated:Human:Digestive system:Large intestine:Fecal 103.0 +class Erysipelotrichia root:Host-associated:Human:Digestive system:Large intestine:Fecal 113.0 class Erysipelotrichia root:Environmental:Aquatic:Marine 2.0 class Erysipelotrichia root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -class Erysipelotrichia root:Host-associated:Mammals:Digestive system 20.0 +class Erysipelotrichia root:Host-associated:Mammals:Digestive system 21.0 class Erysipelotrichia root:Host-associated:Human 1.0 -class Erysipelotrichia root:Host-associated:Human:Digestive system:Large intestine 10.0 +class Erysipelotrichia root:Host-associated:Human:Digestive system:Large intestine 11.0 class Erysipelotrichia root:Environmental:Terrestrial:Soil:Agricultural 2.0 class Erysipelotrichia root:Engineered:Bioreactor 6.0 class Erysipelotrichia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 class Erysipelotrichia root:Engineered:Wastewater:Activated Sludge 1.0 +class Erysipelotrichia root:Mixed 1.0 class Erysipelotrichia root:Host-associated:Mammals 2.0 -class Erysipelotrichia root:Host-associated:Human:Digestive system:Intestine 3.0 +class Erysipelotrichia root:Host-associated:Human:Digestive system:Intestine 4.0 class Erysipelotrichia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 class Erysipelotrichia root:Engineered:Wastewater 1.0 class Erysipelotrichia root:Host-associated:Human:Digestive system:Oral 2.0 class Erysipelotrichia root:Engineered:Food production:Dairy products 2.0 class Erysipelotrichia root:Environmental:Terrestrial:Soil 1.0 class Erysipelotrichia root:Environmental:Aquatic:Marine:Sediment 2.0 -class Erysipelotrichia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Erysipelotrichia root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +class Erysipelotrichia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 class Erysipelotrichia root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Erysipelotrichia root:Environmental:Aquatic:Sediment 2.0 +class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Midgut 3.0 class Erysipelotrichia root:Engineered:Biogas plant:Wet fermentation 2.0 +class Erysipelotrichia root:Engineered:Lab enrichment 2.0 class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 class Erysipelotrichia root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 class Erysipelotrichia root:Host-associated:Birds:Digestive system:Ceca 4.0 class Erysipelotrichia root:Host-associated:Human:Digestive system 27.0 class Erysipelotrichia root:Environmental:Aquatic:Marine:Coastal 1.0 class Erysipelotrichia root:Engineered:Solid waste:Composting 4.0 -class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 14.0 +class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 15.0 class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 class Erysipelotrichia root:Host-associated:Arthropoda:Digestive system:Gut 2.0 class Erysipelotrichia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 @@ -32066,7 +32625,6 @@ class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Large intes class Erysipelotrichia root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 class Erysipelotrichia root:Host-associated:Animal:Digestive system 4.0 class Erysipelotrichia root:Host-associated:Insecta:Digestive system 1.0 -class Erysipelotrichia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Erysipelotrichia root:Host-associated:Fish:Digestive system 1.0 class Erysipelotrichia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 class Erysipelotrichia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -32074,34 +32632,36 @@ class Erysipelotrichia root:Engineered:Wastewater:Water and sludge 1.0 class Erysipelotrichia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 class Erysipelotrichia root:Environmental:Terrestrial 1.0 class Erysipelotrichia root:Host-associated:Mammals:Gastrointestinal tract 3.0 +class Erysipelotrichia root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 +class Erysipelotrichia root:Engineered:Built environment 1.0 class Erysipelotrichia root:Host-associated:Birds:Digestive system 7.0 -class Erysipelotrichia root:Engineered:Lab enrichment 2.0 class Erysipelotrichia root:Host-associated:Animal:Digestive system:Fecal 5.0 class Erysipelotrichia root:Engineered:Biogas plant 4.0 class Erysipelotrichia root:Host-associated:Mammals:Respiratory system 4.0 class Erysipelotrichia root:Host-associated:Birds 2.0 -class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 +class Erysipelotrichia root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Erysipelotrichia root:Host-associated:Human:Circulatory system:Blood 1.0 order Erysipelotrichales root:Environmental:Aquatic:Freshwater:Sediment 2.0 -order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Fecal 58.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Fecal 60.0 order Erysipelotrichales root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 order Erysipelotrichales root:Host-associated:Birds:Digestive system:Fecal 10.0 order Erysipelotrichales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -order Erysipelotrichales root:Host-associated:Human:Digestive system:Large intestine:Fecal 151.0 +order Erysipelotrichales root:Host-associated:Human:Digestive system:Large intestine:Fecal 161.0 order Erysipelotrichales root:Environmental:Aquatic:Marine 2.0 order Erysipelotrichales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Erysipelotrichales root:Host-associated:Mammals:Digestive system 21.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system 22.0 order Erysipelotrichales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Erysipelotrichales root:Host-associated:Human 3.0 -order Erysipelotrichales root:Host-associated:Human:Digestive system:Large intestine 11.0 +order Erysipelotrichales root:Host-associated:Human:Digestive system:Large intestine 12.0 order Erysipelotrichales root:Environmental:Terrestrial:Soil:Agricultural 3.0 order Erysipelotrichales root:Engineered:Bioreactor 3.0 order Erysipelotrichales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Erysipelotrichales root:Engineered:Wastewater:Activated Sludge 2.0 order Erysipelotrichales root:Host-associated:Human:Skin 1.0 +order Erysipelotrichales root:Mixed 1.0 order Erysipelotrichales root:Host-associated:Mammals 1.0 -order Erysipelotrichales root:Host-associated:Human:Digestive system:Intestine 2.0 +order Erysipelotrichales root:Host-associated:Human:Digestive system:Intestine 3.0 order Erysipelotrichales root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 order Erysipelotrichales root:Engineered:Wastewater 3.0 order Erysipelotrichales root:Host-associated:Human:Digestive system:Oral 1.0 @@ -32110,35 +32670,37 @@ order Erysipelotrichales root:Host-associated:Plants:Phylloplane 1.0 order Erysipelotrichales root:Host-associated:Plants:Rhizosphere 1.0 order Erysipelotrichales root:Environmental:Terrestrial:Soil 1.0 order Erysipelotrichales root:Environmental:Aquatic:Marine:Sediment 1.0 -order Erysipelotrichales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Erysipelotrichales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +order Erysipelotrichales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Erysipelotrichales root:Environmental:Aquatic:Sediment 1.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Midgut 5.0 order Erysipelotrichales root:Engineered:Biogas plant:Wet fermentation 2.0 -order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 19.0 +order Erysipelotrichales root:Engineered:Lab enrichment 2.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 20.0 order Erysipelotrichales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Erysipelotrichales root:Host-associated:Birds:Digestive system:Ceca 6.0 +order Erysipelotrichales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Erysipelotrichales root:Host-associated:Human:Digestive system 23.0 order Erysipelotrichales root:Environmental:Aquatic:Freshwater 1.0 order Erysipelotrichales root:Environmental:Aquatic:Marine:Coastal 1.0 order Erysipelotrichales root:Engineered:Solid waste:Composting 4.0 order Erysipelotrichales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 45.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 46.0 order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 order Erysipelotrichales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Erysipelotrichales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 -order Erysipelotrichales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Large intestine 10.0 order Erysipelotrichales root:Host-associated:Animal:Digestive system 4.0 order Erysipelotrichales root:Host-associated 3.0 -order Erysipelotrichales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Erysipelotrichales root:Host-associated:Fish:Digestive system 1.0 order Erysipelotrichales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 order Erysipelotrichales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order Erysipelotrichales root:Engineered:Wastewater:Water and sludge 3.0 +order Erysipelotrichales root:Engineered:Wastewater:Water and sludge 4.0 order Erysipelotrichales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 order Erysipelotrichales root:Environmental:Terrestrial 1.0 order Erysipelotrichales root:Host-associated:Mammals:Gastrointestinal tract 3.0 +order Erysipelotrichales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Erysipelotrichales root:Host-associated:Birds:Digestive system 4.0 -order Erysipelotrichales root:Engineered:Lab enrichment 2.0 order Erysipelotrichales root:Host-associated:Animal:Digestive system:Fecal 4.0 order Erysipelotrichales root:Engineered:Solid waste:Landfill 1.0 order Erysipelotrichales root:Engineered:Biogas plant 6.0 @@ -32146,9 +32708,9 @@ order Erysipelotrichales root:Host-associated:Reptile 1.0 order Erysipelotrichales root:Host-associated:Mammals:Respiratory system 4.0 order Erysipelotrichales root:Host-associated:Birds 2.0 order Erysipelotrichales root:Environmental:Aquatic:Aquaculture 1.0 -order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Midgut 3.0 order Erysipelotrichales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 +order Erysipelotrichales root:Host-associated:Mammals:Digestive system:Foregut 1.0 order Erysipelotrichales root:Host-associated:Human:Circulatory system:Blood 1.0 order Erysipelotrichales root:Host-associated:Human:Circulatory system 1.0 order Erysipelotrichales root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -32156,15 +32718,15 @@ order Erysipelotrichales root:Host-associated:Human:Respiratory system:Pulmonary order Erysipelotrichales root:Host-associated:Mammals:Excretory system 1.0 order Erysipelotrichales root:Host-associated:Mammals:Milk 1.0 order Coriobacteriales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Coriobacteriales root:Host-associated:Mammals:Digestive system:Fecal 18.0 +order Coriobacteriales root:Host-associated:Mammals:Digestive system:Fecal 19.0 order Coriobacteriales root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 order Coriobacteriales root:Host-associated:Birds:Digestive system:Fecal 6.0 order Coriobacteriales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -order Coriobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 140.0 +order Coriobacteriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 150.0 order Coriobacteriales root:Host-associated:Mammals:Digestive system 10.0 order Coriobacteriales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Coriobacteriales root:Host-associated:Human 3.0 -order Coriobacteriales root:Host-associated:Human:Digestive system:Large intestine 7.0 +order Coriobacteriales root:Host-associated:Human:Digestive system:Large intestine 8.0 order Coriobacteriales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Coriobacteriales root:Engineered:Bioreactor 5.0 order Coriobacteriales root:Engineered:Wastewater:Activated Sludge 1.0 @@ -32172,21 +32734,24 @@ order Coriobacteriales root:Host-associated:Human:Digestive system:Intestine 2.0 order Coriobacteriales root:Engineered:Food production:Fermented beverages 1.0 order Coriobacteriales root:Engineered:Wastewater 1.0 order Coriobacteriales root:Host-associated:Human:Reproductive system:Vagina 15.0 -order Coriobacteriales root:Host-associated:Human:Digestive system:Oral 8.0 +order Coriobacteriales root:Host-associated:Human:Digestive system:Oral 9.0 order Coriobacteriales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Coriobacteriales root:Environmental:Terrestrial:Soil 2.0 -order Coriobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Coriobacteriales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +order Coriobacteriales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Coriobacteriales root:Environmental:Aquatic:Sediment 1.0 -order Coriobacteriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 17.0 +order Coriobacteriales root:Host-associated:Mammals:Digestive system:Midgut 2.0 +order Coriobacteriales root:Engineered:Lab enrichment 1.0 +order Coriobacteriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 18.0 order Coriobacteriales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 order Coriobacteriales root:Host-associated:Birds:Digestive system:Ceca 3.0 order Coriobacteriales root:Host-associated:Human:Digestive system 17.0 order Coriobacteriales root:Engineered:Solid waste:Composting 1.0 -order Coriobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 23.0 +order Coriobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 24.0 order Coriobacteriales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 order Coriobacteriales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Coriobacteriales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 -order Coriobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +order Coriobacteriales root:Host-associated:Mammals:Digestive system:Large intestine 3.0 order Coriobacteriales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Coriobacteriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Coriobacteriales root:Host-associated:Animal:Digestive system 3.0 @@ -32198,13 +32763,11 @@ order Coriobacteriales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Coriobacteriales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 order Coriobacteriales root:Environmental:Terrestrial 1.0 order Coriobacteriales root:Host-associated:Birds:Digestive system 3.0 -order Coriobacteriales root:Engineered:Lab enrichment 1.0 order Coriobacteriales root:Host-associated:Animal:Digestive system:Fecal 3.0 order Coriobacteriales root:Engineered:Biogas plant 1.0 order Coriobacteriales root:Engineered:Food production:Fermented vegetables 1.0 order Coriobacteriales root:Host-associated:Reptile 1.0 order Coriobacteriales root:Host-associated:Mammals:Respiratory system 1.0 -order Coriobacteriales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Coriobacteriales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 order Coriobacteriales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 order Coriobacteriales root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -32213,22 +32776,23 @@ order Coriobacteriales root:Host-associated:Mammals:Milk 1.0 order Coriobacteriales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 order Coriobacteriales root:Engineered:Solid waste:Solid animal waste 1.0 family Erysipelotrichaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 -family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Fecal 39.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Fecal 41.0 family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Erysipelotrichaceae root:Host-associated:Birds:Digestive system:Fecal 5.0 -family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 86.0 +family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 95.0 family Erysipelotrichaceae root:Environmental:Aquatic:Marine 3.0 family Erysipelotrichaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system 14.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system 15.0 family Erysipelotrichaceae root:Host-associated:Human 2.0 -family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Large intestine 8.0 +family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Large intestine 9.0 family Erysipelotrichaceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 family Erysipelotrichaceae root:Engineered:Bioreactor 4.0 family Erysipelotrichaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Erysipelotrichaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Erysipelotrichaceae root:Host-associated:Human:Skin 1.0 -family Erysipelotrichaceae root:Mixed 1.0 +family Erysipelotrichaceae root:Mixed 2.0 family Erysipelotrichaceae root:Host-associated:Mammals 1.0 +family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Erysipelotrichaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Erysipelotrichaceae root:Engineered:Wastewater 3.0 family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Oral 1.0 @@ -32236,90 +32800,94 @@ family Erysipelotrichaceae root:Engineered:Food production:Dairy products 1.0 family Erysipelotrichaceae root:Host-associated:Plants:Phylloplane 1.0 family Erysipelotrichaceae root:Host-associated:Plants:Rhizosphere 1.0 family Erysipelotrichaceae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Erysipelotrichaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Erysipelotrichaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Erysipelotrichaceae root:Environmental:Aquatic:Sediment 2.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Midgut 3.0 family Erysipelotrichaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Erysipelotrichaceae root:Engineered:Lab enrichment 2.0 family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 family Erysipelotrichaceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 family Erysipelotrichaceae root:Host-associated:Birds:Digestive system:Ceca 4.0 +family Erysipelotrichaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Erysipelotrichaceae root:Host-associated:Human:Digestive system 13.0 family Erysipelotrichaceae root:Environmental:Aquatic:Freshwater 1.0 family Erysipelotrichaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Erysipelotrichaceae root:Engineered:Solid waste:Composting 4.0 family Erysipelotrichaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 24.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 25.0 family Erysipelotrichaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Erysipelotrichaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -family Erysipelotrichaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Large intestine 5.0 family Erysipelotrichaceae root:Host-associated:Animal:Digestive system 3.0 family Erysipelotrichaceae root:Host-associated 3.0 family Erysipelotrichaceae root:Host-associated:Fish:Digestive system 1.0 family Erysipelotrichaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 family Erysipelotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Erysipelotrichaceae root:Engineered:Wastewater:Water and sludge 1.0 family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 +family Erysipelotrichaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Erysipelotrichaceae root:Host-associated:Birds:Digestive system 3.0 -family Erysipelotrichaceae root:Engineered:Lab enrichment 2.0 family Erysipelotrichaceae root:Host-associated:Animal:Digestive system:Fecal 3.0 family Erysipelotrichaceae root:Engineered:Solid waste:Landfill 1.0 family Erysipelotrichaceae root:Engineered:Biogas plant 5.0 family Erysipelotrichaceae root:Host-associated:Reptile 1.0 family Erysipelotrichaceae root:Host-associated:Mammals:Respiratory system 4.0 family Erysipelotrichaceae root:Environmental:Aquatic:Aquaculture 1.0 -family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 +family Erysipelotrichaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Erysipelotrichaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Erysipelotrichaceae root:Host-associated:Human:Circulatory system 1.0 family Erysipelotrichaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 family Bifidobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 10.0 -family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 118.0 -family Bifidobacteriaceae root:Environmental:Aquatic:Marine 1.0 +family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 127.0 +family Bifidobacteriaceae root:Environmental:Aquatic:Marine 2.0 family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system 4.0 -family Bifidobacteriaceae root:Host-associated:Human 4.0 -family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Large intestine 7.0 +family Bifidobacteriaceae root:Host-associated:Human 5.0 +family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Large intestine 8.0 family Bifidobacteriaceae root:Engineered:Bioreactor 2.0 family Bifidobacteriaceae root:Engineered:Wastewater:Activated Sludge 4.0 family Bifidobacteriaceae root:Mixed 1.0 family Bifidobacteriaceae root:Host-associated:Mammals 1.0 -family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Intestine 2.0 +family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Intestine 3.0 family Bifidobacteriaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Bifidobacteriaceae root:Engineered:Wastewater 1.0 family Bifidobacteriaceae root:Host-associated:Human:Reproductive system:Vagina 13.0 family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Oral 2.0 -family Bifidobacteriaceae root:Engineered:Food production:Dairy products 3.0 +family Bifidobacteriaceae root:Engineered:Food production:Dairy products 4.0 family Bifidobacteriaceae root:Environmental:Terrestrial:Soil 2.0 family Bifidobacteriaceae root:Environmental:Aquatic:Marine:Sediment 3.0 -family Bifidobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Bifidobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 +family Bifidobacteriaceae root:Engineered:Lab enrichment 1.0 family Bifidobacteriaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 family Bifidobacteriaceae root:Host-associated:Human:Digestive system 15.0 family Bifidobacteriaceae root:Environmental:Aquatic:Freshwater 2.0 family Bifidobacteriaceae root:Environmental:Aquatic:Marine:Coastal 1.0 -family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 +family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 13.0 family Bifidobacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Bifidobacteriaceae root:Engineered:Food production 1.0 family Bifidobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 3.0 family Bifidobacteriaceae root:Host-associated:Animal:Digestive system 2.0 family Bifidobacteriaceae root:Host-associated:Insecta:Digestive system 1.0 family Bifidobacteriaceae root:Host-associated 1.0 family Bifidobacteriaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Bifidobacteriaceae root:Host-associated:Human:Reproductive system:Female 2.0 family Bifidobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Bifidobacteriaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Bifidobacteriaceae root:Engineered:Wastewater:Water and sludge 3.0 family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 family Bifidobacteriaceae root:Environmental:Terrestrial 1.0 family Bifidobacteriaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Bifidobacteriaceae root:Host-associated:Insecta 1.0 family Bifidobacteriaceae root:Host-associated:Birds:Digestive system 2.0 -family Bifidobacteriaceae root:Engineered:Lab enrichment 1.0 family Bifidobacteriaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 family Bifidobacteriaceae root:Engineered:Food production:Fermented vegetables 1.0 family Bifidobacteriaceae root:Host-associated:Mammals:Respiratory system 3.0 family Bifidobacteriaceae root:Host-associated:Birds 1.0 family Bifidobacteriaceae root:Engineered 1.0 family Bifidobacteriaceae root:Environmental:Aquatic:Aquaculture 1.0 -family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Bifidobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 family Bifidobacteriaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Bifidobacteriaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -32332,7 +32900,7 @@ family Atopobiaceae root:Host-associated:Human 2.0 family Atopobiaceae root:Host-associated:Human:Skin 1.0 family Atopobiaceae root:Engineered:Wastewater 1.0 family Atopobiaceae root:Host-associated:Human:Reproductive system:Vagina 8.0 -family Atopobiaceae root:Host-associated:Human:Digestive system:Oral 7.0 +family Atopobiaceae root:Host-associated:Human:Digestive system:Oral 8.0 family Atopobiaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 family Atopobiaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Atopobiaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -32341,15 +32909,17 @@ family Atopobiaceae root:Host-associated:Human:Reproductive system:Female 1.0 family Atopobiaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 family Zoogloeaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Zoogloeaceae root:Engineered:Bioreactor 8.0 -family Zoogloeaceae root:Engineered:Wastewater:Activated Sludge 11.0 +family Zoogloeaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +family Zoogloeaceae root:Engineered:Wastewater:Activated Sludge 12.0 family Zoogloeaceae root:Engineered:Wastewater 5.0 family Zoogloeaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Zoogloeaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Zoogloeaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Zoogloeaceae root:Engineered:Wastewater:Industrial wastewater 6.0 family Zoogloeaceae root:Environmental:Terrestrial:Soil:Clay 1.0 -family Zoogloeaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Zoogloeaceae root:Engineered:Wastewater:Water and sludge 3.0 family Zoogloeaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 +family Zoogloeaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Zoogloeaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Desulfobulbus root:Environmental:Aquatic:Freshwater:Sediment 6.0 genus Desulfobulbus root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -32375,13 +32945,15 @@ genus Desulfobacter root:Environmental:Aquatic:Freshwater:Sediment 3.0 genus Desulfobacter root:Environmental:Aquatic:Marine 1.0 genus Desulfobacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Desulfobacter root:Engineered:Bioreactor 1.0 +genus Desulfobacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Desulfobacter root:Environmental:Aquatic:Marine:Sediment 4.0 genus Desulfobacter root:Engineered 1.0 genus Olsenella root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Olsenella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Olsenella root:Host-associated:Birds:Digestive system:Fecal 2.0 +genus Olsenella root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Olsenella root:Engineered:Wastewater 1.0 -genus Olsenella root:Host-associated:Human:Digestive system:Oral 2.0 +genus Olsenella root:Host-associated:Human:Digestive system:Oral 3.0 genus Olsenella root:Engineered:Biogas plant:Wet fermentation 1.0 genus Olsenella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Olsenella root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -32394,6 +32966,7 @@ genus Longilinea root:Engineered:Bioreactor 2.0 genus Longilinea root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 genus Longilinea root:Engineered:Wastewater:Activated Sludge 3.0 genus Longilinea root:Engineered:Wastewater 1.0 +genus Longilinea root:Host-associated:Plants:Rhizosphere 2.0 genus Longilinea root:Environmental:Terrestrial:Soil 1.0 genus Longilinea root:Environmental:Aquatic:Marine:Sediment 2.0 genus Longilinea root:Environmental:Aquatic:Sediment 1.0 @@ -32408,7 +32981,7 @@ species Desulfobacter postgatei root:Environmental:Aquatic:Marine:Intertidal zon species Desulfobacter postgatei root:Engineered:Bioreactor 1.0 species Desulfobacter postgatei root:Engineered 1.0 species Olsenella umbonata root:Environmental:Aquatic:Freshwater:Sediment 1.0 -species Olsenella umbonata root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Olsenella umbonata root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Bacteroidetes bacterium 41-46 root:Environmental:Aquatic:Freshwater:Sediment 5.0 species Bacteroidetes bacterium 41-46 root:Engineered:Bioreactor 3.0 species Bacteroidetes bacterium 41-46 root:Engineered:Wastewater:Activated Sludge 2.0 @@ -32416,7 +32989,7 @@ species Bacteroidetes bacterium 41-46 root:Mixed 1.0 species Bacteroidetes bacterium 41-46 root:Engineered:Wastewater:Industrial wastewater 1.0 species Turicibacter sp. H121 root:Environmental:Aquatic:Freshwater:Sediment 2.0 species Turicibacter sp. H121 root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Turicibacter sp. H121 root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 +species Turicibacter sp. H121 root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 species Turicibacter sp. H121 root:Host-associated:Mammals:Digestive system 1.0 species Turicibacter sp. H121 root:Environmental:Terrestrial:Soil:Agricultural 2.0 species Turicibacter sp. H121 root:Engineered:Bioreactor 2.0 @@ -32449,10 +33022,10 @@ species Macellibacteroides sp. HH-ZS root:Environmental:Aquatic:Freshwater:Sedim species Macellibacteroides sp. HH-ZS root:Engineered:Bioreactor 2.0 species Macellibacteroides sp. HH-ZS root:Engineered:Wastewater:Activated Sludge 7.0 species Macellibacteroides sp. HH-ZS root:Engineered:Wastewater:Industrial wastewater 1.0 -species Macellibacteroides sp. HH-ZS root:Engineered:Wastewater:Water and sludge 1.0 +species Macellibacteroides sp. HH-ZS root:Engineered:Wastewater:Water and sludge 2.0 species Bifidobacterium angulatum root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Bifidobacterium angulatum root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Bifidobacterium angulatum root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Bifidobacterium angulatum root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 species Bifidobacterium angulatum root:Host-associated:Mammals:Digestive system 1.0 species Bifidobacterium angulatum root:Engineered:Wastewater 1.0 class Thermomicrobia root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -32469,13 +33042,14 @@ class Thermomicrobia root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Thermomicrobia root:Environmental:Terrestrial:Soil 1.0 class Thermomicrobia root:Environmental:Aquatic:Sediment 1.0 class Thermomicrobia root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +class Thermomicrobia root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Thermomicrobia root:Engineered:Solid waste:Composting 7.0 class Thermomicrobia root:Environmental:Terrestrial:Soil:Desert 1.0 +class Thermomicrobia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 class Thermomicrobia root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Thermomicrobia root:Engineered:Lab enrichment:Defined media 2.0 class Thermomicrobia root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Thermomicrobia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -class Thermomicrobia root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Thermomicrobia root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 class Thermomicrobia root:Engineered:Wastewater:Industrial wastewater 1.0 class Thermomicrobia root:Environmental:Aquatic:Thermal springs:Sediment 2.0 @@ -32497,6 +33071,7 @@ class Nitrososphaeria root:Host-associated:Plants:Rhizosphere 7.0 class Nitrososphaeria root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 class Nitrososphaeria root:Environmental:Terrestrial:Soil 5.0 class Nitrososphaeria root:Environmental:Aquatic:Marine:Sediment 16.0 +class Nitrososphaeria root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Nitrososphaeria root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Nitrososphaeria root:Host-associated:Porifera 2.0 class Nitrososphaeria root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -32524,12 +33099,12 @@ class Ktedonobacteria root:Mixed 2.0 class Ktedonobacteria root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Ktedonobacteria root:Host-associated:Plants:Phylloplane 1.0 class Ktedonobacteria root:Host-associated:Plants:Rhizosphere 2.0 -class Ktedonobacteria root:Environmental:Terrestrial:Soil 11.0 +class Ktedonobacteria root:Environmental:Terrestrial:Soil 12.0 class Ktedonobacteria root:Environmental:Aquatic:Sediment 1.0 class Ktedonobacteria root:Environmental:Terrestrial:Soil:Grasslands 1.0 +class Ktedonobacteria root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Ktedonobacteria root:Environmental:Aquatic:Marine:Coastal 1.0 class Ktedonobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -class Ktedonobacteria root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Ktedonobacteria root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 class Ktedonobacteria root:Environmental:Terrestrial:Soil:Mine 1.0 class Ktedonobacteria root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -32553,11 +33128,11 @@ order Ktedonobacterales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Ktedonobacterales root:Engineered:Bioreactor 1.0 order Ktedonobacterales root:Mixed 2.0 order Ktedonobacterales root:Host-associated:Plants:Rhizosphere 2.0 -order Ktedonobacterales root:Environmental:Terrestrial:Soil 5.0 +order Ktedonobacterales root:Environmental:Terrestrial:Soil 6.0 order Ktedonobacterales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Ktedonobacterales root:Environmental:Terrestrial:Soil:Grasslands 1.0 -order Ktedonobacterales root:Environmental:Aquatic:Marine:Coastal 1.0 order Ktedonobacterales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Ktedonobacterales root:Environmental:Aquatic:Marine:Coastal 1.0 order Ktedonobacterales root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 order Ktedonobacterales root:Environmental:Terrestrial:Soil:Mine 1.0 order Ktedonobacterales root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 @@ -32584,14 +33159,16 @@ order Acidothermales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Acidothermales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Acidothermales root:Environmental:Terrestrial:Soil 4.0 order Acidothermales root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 +order Acidothermales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Acidothermales root:Environmental:Terrestrial:Volcanic 1.0 order Pseudonocardiales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Pseudonocardiales root:Environmental:Aquatic:Marine 2.0 +order Pseudonocardiales root:Environmental:Aquatic:Marine 3.0 order Pseudonocardiales root:Host-associated:Plants 4.0 order Pseudonocardiales root:Engineered:Bioreactor 4.0 -order Pseudonocardiales root:Host-associated:Plants:Rhizosphere 16.0 +order Pseudonocardiales root:Host-associated:Plants:Rhizosphere 17.0 order Pseudonocardiales root:Environmental:Terrestrial:Soil 3.0 order Pseudonocardiales root:Environmental:Aquatic:Sediment 1.0 +order Pseudonocardiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Pseudonocardiales root:Engineered:Solid waste:Composting 4.0 order Pseudonocardiales root:Environmental:Terrestrial:Deep subsurface 1.0 order Pseudonocardiales root:Host-associated:Birds 1.0 @@ -32606,11 +33183,11 @@ family Ktedonobacteraceae root:Environmental:Aquatic:Marine 1.0 family Ktedonobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Ktedonobacteraceae root:Mixed 2.0 family Ktedonobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 -family Ktedonobacteraceae root:Environmental:Terrestrial:Soil 6.0 +family Ktedonobacteraceae root:Environmental:Terrestrial:Soil 7.0 family Ktedonobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Ktedonobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Ktedonobacteraceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Ktedonobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Ktedonobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Ktedonobacteraceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 family Ktedonobacteraceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Ktedonobacteraceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -32626,10 +33203,11 @@ family Acidothermaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Acidothermaceae root:Environmental:Terrestrial:Soil 11.0 family Acidothermaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 family Acidothermaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Acidothermaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Acidothermaceae root:Environmental:Terrestrial:Volcanic 1.0 family Pseudonocardiaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Pseudonocardiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Pseudonocardiaceae root:Environmental:Aquatic:Marine 3.0 +family Pseudonocardiaceae root:Environmental:Aquatic:Marine 4.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Pseudonocardiaceae root:Host-associated:Plants 6.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -32638,14 +33216,14 @@ family Pseudonocardiaceae root:Host-associated:Mammals 1.0 family Pseudonocardiaceae root:Engineered:Wastewater 1.0 family Pseudonocardiaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 -family Pseudonocardiaceae root:Host-associated:Plants:Rhizosphere 13.0 +family Pseudonocardiaceae root:Host-associated:Plants:Rhizosphere 14.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil 15.0 family Pseudonocardiaceae root:Environmental:Aquatic:Sediment 1.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Grasslands 3.0 +family Pseudonocardiaceae root:Host-associated:Plants:Rhizosphere:Soil 6.0 family Pseudonocardiaceae root:Engineered:Solid waste:Composting 4.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Desert 7.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Deep subsurface 1.0 -family Pseudonocardiaceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Pseudonocardiaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Clay 1.0 family Pseudonocardiaceae root:Environmental:Terrestrial:Soil:Crop 1.0 @@ -32653,6 +33231,7 @@ family Pseudonocardiaceae root:Host-associated:Insecta 1.0 family Pseudonocardiaceae root:Engineered:Built environment 1.0 family Pseudonocardiaceae root:Engineered:Food production:Fermented vegetables 1.0 family Pseudonocardiaceae root:Host-associated:Birds 1.0 +family Pseudonocardiaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Pseudonocardiaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 family Pseudonocardiaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Nitrolancea root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -32674,8 +33253,8 @@ genus Acidothermus root:Environmental:Terrestrial:Soil 17.0 genus Acidothermus root:Environmental:Aquatic 1.0 genus Acidothermus root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 genus Acidothermus root:Environmental:Terrestrial:Soil:Grasslands 2.0 +genus Acidothermus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Acidothermus root:Host-associated:Plants:Root 1.0 -genus Acidothermus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Acidothermus root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Acidothermus root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 genus Acidothermus root:Environmental:Terrestrial:Volcanic 1.0 @@ -32748,15 +33327,15 @@ class Sva0725 root:Host-associated:Plants:Rhizosphere 1.0 class Sva0725 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Sva0725 root:Environmental:Terrestrial:Soil 3.0 class Sva0725 root:Environmental:Aquatic:Marine:Sediment 1.0 +class Sva0725 root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Sva0725 root:Environmental:Aquatic:Marine:Cold seeps 1.0 class Sva0725 root:Environmental:Terrestrial:Soil:Desert 1.0 -class Sva0725 root:Host-associated:Plants:Rhizosphere:Soil 2.0 class Sva0725 root:Environmental:Terrestrial:Soil:Sand 1.0 order Thermoanaerobacterales root:Environmental:Aquatic:Freshwater:Sediment 2.0 order Thermoanaerobacterales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 order Thermoanaerobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 order Thermoanaerobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Thermoanaerobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +order Thermoanaerobacterales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 order Thermoanaerobacterales root:Engineered:Bioreactor 21.0 order Thermoanaerobacterales root:Engineered:Wastewater:Activated Sludge 11.0 order Thermoanaerobacterales root:Engineered:Food production:Fermented beverages 3.0 @@ -32783,7 +33362,7 @@ order Thermoanaerobacterales root:Engineered:Biotransformation:Mixed alcohol bio order Thermoanaerobacterales root:Engineered:Solid waste:Composting:Bioreactor 1.0 order Thermoanaerobacterales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Thiotrichales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Thiotrichales root:Environmental:Aquatic:Marine 50.0 +order Thiotrichales root:Environmental:Aquatic:Marine 57.0 order Thiotrichales root:Host-associated:Fish 2.0 order Thiotrichales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 order Thiotrichales root:Environmental:Aquatic:Marine:Oceanic 4.0 @@ -32795,7 +33374,7 @@ order Thiotrichales root:Environmental:Aquatic:Estuary:Sediment 2.0 order Thiotrichales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Thiotrichales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Thiotrichales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -order Thiotrichales root:Engineered:Wastewater:Activated Sludge 1.0 +order Thiotrichales root:Engineered:Wastewater:Activated Sludge 2.0 order Thiotrichales root:Mixed 1.0 order Thiotrichales root:Engineered:Food production:Fermented beverages 1.0 order Thiotrichales root:Engineered:Wastewater 2.0 @@ -32808,6 +33387,8 @@ order Thiotrichales root:Environmental:Aquatic:Marine:Sediment 20.0 order Thiotrichales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Thiotrichales root:Environmental:Aquatic:Sediment 4.0 order Thiotrichales root:Host-associated:Porifera 1.0 +order Thiotrichales root:Engineered:Lab enrichment 1.0 +order Thiotrichales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Thiotrichales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 4.0 order Thiotrichales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 order Thiotrichales root:Environmental:Aquatic:Marine:Coastal 7.0 @@ -32818,7 +33399,6 @@ order Thiotrichales root:Environmental:Aquatic:Marine:Oil-contaminated sediment order Thiotrichales root:Engineered:Food production 2.0 order Thiotrichales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Thiotrichales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -order Thiotrichales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Thiotrichales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 order Thiotrichales root:Environmental:Aquatic:Estuary 1.0 order Thiotrichales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -32833,10 +33413,9 @@ order Thiotrichales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Thiotrichales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Thiotrichales root:Environmental:Aquatic:Marine:Pelagic 1.0 order Thiotrichales root:Engineered:Wastewater:Water and sludge 2.0 +order Thiotrichales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Thiotrichales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 5.0 order Thiotrichales root:Environmental:Aquatic:Marine:Oceanic:Benthic 6.0 -order Thiotrichales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -order Thiotrichales root:Engineered:Lab enrichment 1.0 order Thiotrichales root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 order Thiotrichales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Thiotrichales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -32888,7 +33467,9 @@ family Planococcaceae root:Host-associated:Plants:Rhizosphere 1.0 family Planococcaceae root:Environmental:Terrestrial:Soil 22.0 family Planococcaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Planococcaceae root:Environmental:Aquatic:Sediment 2.0 +family Planococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Planococcaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Planococcaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Planococcaceae root:Environmental:Aquatic:Thermal springs 1.0 family Planococcaceae root:Engineered:Solid waste:Composting 4.0 family Planococcaceae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 @@ -32898,7 +33479,6 @@ family Planococcaceae root:Host-associated:Algae:Red algae 1.0 family Planococcaceae root:Host-associated:Plants:Root 1.0 family Planococcaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Planococcaceae root:Engineered:Food production 1.0 -family Planococcaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Planococcaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Planococcaceae root:Engineered:Modeled 1.0 family Planococcaceae root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -32909,7 +33489,6 @@ family Planococcaceae root:Engineered:Bioreactor:Continuous culture:Marine sedim family Planococcaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Planococcaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Planococcaceae root:Engineered:Food production:Fermented vegetables 1.0 -family Planococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Planococcaceae root:Host-associated:Arthropoda 1.0 family Planococcaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 family Planococcaceae root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -32934,7 +33513,7 @@ genus Thiothrix root:Host-associated:Human:Digestive system:Large intestine:Feca genus Thiothrix root:Environmental:Aquatic:Marine 1.0 genus Thiothrix root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Thiothrix root:Engineered:Bioreactor 1.0 -genus Thiothrix root:Engineered:Wastewater:Activated Sludge 3.0 +genus Thiothrix root:Engineered:Wastewater:Activated Sludge 4.0 genus Thiothrix root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Thiothrix root:Engineered:Wastewater 2.0 genus Thiothrix root:Host-associated:Plants:Rhizosphere 2.0 @@ -32987,31 +33566,272 @@ species Bacillus thermoamylovorans root:Environmental:Terrestrial:Soil:Contamina species Bacillus thermoamylovorans root:Engineered:Food production:Fermented vegetables 1.0 species Clostridium cibaria root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Clostridium cibaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 +family Gallionellaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 +family Gallionellaceae root:Engineered:Bioreactor 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 +family Gallionellaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 +family Gallionellaceae root:Environmental:Terrestrial:Soil 7.0 +family Gallionellaceae root:Environmental:Aquatic:Marine:Sediment 3.0 +family Gallionellaceae root:Environmental:Aquatic:Sediment 8.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +family Gallionellaceae root:Host-associated:Insecta:Digestive system 1.0 +family Gallionellaceae root:Environmental:Terrestrial:Soil:Clay 1.0 +family Gallionellaceae root:Engineered:Bioreactor:Continuous culture 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 +family Gallionellaceae root:Engineered:Industrial production 1.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +family Gallionellaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 3.0 +family Gallionellaceae root:Engineered:Bioremediation:Hydrocarbon 1.0 +family Gallionellaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 +family Gallionellaceae root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 +family Bradyrhizobiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Geologic 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Forest soil 15.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Lentic:Brackish 2.0 +family Bradyrhizobiaceae root:Host-associated:Plants 7.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Agricultural 20.0 +family Bradyrhizobiaceae root:Engineered:Bioreactor 3.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +family Bradyrhizobiaceae root:Engineered:Wastewater:Activated Sludge 5.0 +family Bradyrhizobiaceae root:Host-associated:Human:Skin 3.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Permafrost 5.0 +family Bradyrhizobiaceae root:Host-associated:Mammals 4.0 +family Bradyrhizobiaceae root:Host-associated:Amphibia 1.0 +family Bradyrhizobiaceae root:Engineered:Wastewater 3.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Contaminated 7.0 +family Bradyrhizobiaceae root:Host-associated:Plants:Phylloplane 1.0 +family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere 22.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil 68.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Sediment 4.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 +family Bradyrhizobiaceae root:Engineered:Lab enrichment 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Grasslands 8.0 +family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 +family Bradyrhizobiaceae root:Host-associated:Human:Digestive system 2.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater 2.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Desert 5.0 +family Bradyrhizobiaceae root:Host-associated:Plants:Root 4.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Deep subsurface 1.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 +family Bradyrhizobiaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +family Bradyrhizobiaceae root:Engineered:Wastewater:Industrial wastewater 1.0 +family Bradyrhizobiaceae root:Host-associated:Insecta:Digestive system 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Mine 2.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 +family Bradyrhizobiaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 +family Bradyrhizobiaceae root:Engineered:Bioreactor:Continuous culture 3.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +family Bradyrhizobiaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Crop 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 +family Bradyrhizobiaceae root:Host-associated:Insecta 1.0 +family Bradyrhizobiaceae root:Engineered:Built environment 3.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +family Bradyrhizobiaceae root:Engineered 1.0 +family Bradyrhizobiaceae root:Host-associated:Fungi 1.0 +family Bradyrhizobiaceae root:Engineered:Bioremediation 2.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 +family Bradyrhizobiaceae root:Engineered:Biotransformation 1.0 +family Bradyrhizobiaceae root:Host-associated:Human:Circulatory system 1.0 +family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 +family Bradyrhizobiaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 +family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Marine 1.0 +family Rhodanobacteraceae root:Host-associated:Plants 1.0 +family Rhodanobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 +family Rhodanobacteraceae root:Engineered:Bioreactor 3.0 +family Rhodanobacteraceae root:Engineered:Wastewater:Activated Sludge 13.0 +family Rhodanobacteraceae root:Engineered:Wastewater 3.0 +family Rhodanobacteraceae root:Host-associated:Plants:Rhizosphere 8.0 +family Rhodanobacteraceae root:Environmental:Terrestrial:Soil 1.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Sediment 3.0 +family Rhodanobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 +family Rhodanobacteraceae root:Engineered:Solid waste:Composting 1.0 +family Rhodanobacteraceae root:Engineered:Lab enrichment:Defined media 1.0 +family Rhodanobacteraceae root:Host-associated:Plants:Root 1.0 +family Rhodanobacteraceae root:Engineered:Wastewater:Water and sludge 1.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Ice 1.0 +family Rhodanobacteraceae root:Host-associated:Insecta 1.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 +family Rhodanobacteraceae root:Host-associated:Fungi 1.0 +family Rhodanobacteraceae root:Engineered:Bioremediation 1.0 +family Rhodanobacteraceae root:Environmental:Terrestrial:Volcanic 1.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine 1.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 +family Candidatus Methanoperedenaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 +family Candidatus Methanoperedenaceae root:Environmental:Terrestrial:Soil 2.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine:Sediment 3.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 +family Candidatus Methanoperedenaceae root:Engineered:Bioreactor:Continuous culture 1.0 +family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Sediment 2.0 +genus Bradyrhizobium root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +genus Bradyrhizobium root:Environmental:Aquatic:Marine 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Forest soil 6.0 +genus Bradyrhizobium root:Host-associated:Plants 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Agricultural 4.0 +genus Bradyrhizobium root:Engineered:Bioreactor 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Bradyrhizobium root:Host-associated:Human:Skin 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Permafrost 2.0 +genus Bradyrhizobium root:Host-associated:Mammals 1.0 +genus Bradyrhizobium root:Host-associated:Amphibia 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Contaminated 1.0 +genus Bradyrhizobium root:Host-associated:Plants:Phylloplane 1.0 +genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere 6.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil 18.0 +genus Bradyrhizobium root:Environmental:Aquatic:Marine:Sediment 3.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere:Soil 2.0 +genus Bradyrhizobium root:Host-associated:Human:Digestive system 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater 2.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Drinking water 2.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Deep subsurface 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 +genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 +genus Bradyrhizobium root:Host-associated:Reptile:Oral cavity 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Crop 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 +genus Bradyrhizobium root:Engineered:Built environment 1.0 +genus Bradyrhizobium root:Engineered 1.0 +genus Bradyrhizobium root:Engineered:Bioremediation 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 +genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 +genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 +genus Sideroxydans root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Sideroxydans root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 +genus Sideroxydans root:Environmental:Terrestrial:Soil 2.0 +genus Sideroxydans root:Environmental:Aquatic:Sediment 3.0 +genus Sideroxydans root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +genus Sideroxydans root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Methylogaea root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Rhodanobacter root:Environmental:Aquatic:Freshwater:Sediment 2.0 +genus Rhodanobacter root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Rhodanobacter root:Environmental:Terrestrial:Soil:Agricultural 1.0 +genus Rhodanobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Rhodanobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 +genus Rhodanobacter root:Host-associated:Plants:Rhizosphere 3.0 +genus Rhodanobacter root:Environmental:Terrestrial:Soil 3.0 +genus Rhodanobacter root:Host-associated:Plants:Rhizosphere:Soil 2.0 +genus Rhodanobacter root:Engineered:Solid waste:Composting 1.0 +genus Rhodanobacter root:Engineered:Lab enrichment:Defined media 1.0 +genus Rhodanobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Rhodanobacter root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine 42.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic 18.0 +genus Pseudohongiella root:Host-associated:Plants 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Estuary:Sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Pseudohongiella root:Mixed 3.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Sediment 9.0 +genus Pseudohongiella root:Host-associated:Porifera 7.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Coastal 11.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Brackish 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Marginal Sea 2.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Pelagic 4.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 4.0 +genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +species Methylogaea oryzae root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Methylogaea oryzae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Bradyrhizobium sp. lebi-1 root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Bradyrhizobium sp. lebi-1 root:Host-associated:Reptile:Oral cavity 1.0 +species Bradyrhizobium elkanii root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Bradyrhizobium elkanii root:Environmental:Terrestrial:Soil 1.0 +species Bradyrhizobium elkanii root:Host-associated:Human:Digestive system 1.0 +species Bradyrhizobium elkanii root:Environmental:Aquatic:Freshwater 1.0 +species Bradyrhizobium elkanii root:Engineered 1.0 +species Candidatus Methanoperedens nitroreducens root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Candidatus Methanoperedens nitroreducens root:Environmental:Aquatic:Estuary:Sediment 1.0 +species Candidatus Methanoperedens nitroreducens root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +species Candidatus Methanoperedens nitroreducens root:Engineered:Bioreactor:Continuous culture 1.0 +species Propionivibrio dicarboxylicus root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Propionivibrio dicarboxylicus root:Engineered:Wastewater:Activated Sludge 1.0 +species Candidatus Dadabacteria bacterium CSP1-2 root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Serratia sp. UW18 root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Sediment 2.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 +species Spirochaetes bacterium RBG 16 49 21 root:Mixed 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Sediment 2.0 +species Spirochaetes bacterium RBG 16 49 21 root:Engineered:Wastewater:Water and sludge 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 +species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +species [Clostridium] scindens root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species [Clostridium] scindens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species [Clostridium] scindens root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +species candidate division NC10 bacterium CSP1-5 root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species candidate division NC10 bacterium CSP1-5 root:Environmental:Terrestrial:Soil 1.0 phylum Chordata root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Chordata root:Host-associated:Mammals:Digestive system:Fecal 7.0 +phylum Chordata root:Host-associated:Mammals:Digestive system:Fecal 8.0 +phylum Chordata root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Chordata root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -phylum Chordata root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 +phylum Chordata root:Host-associated:Human:Digestive system:Large intestine:Fecal 24.0 phylum Chordata root:Environmental:Aquatic:Marine 55.0 phylum Chordata root:Host-associated:Fish 1.0 phylum Chordata root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -phylum Chordata root:Environmental:Aquatic:Marine:Oceanic 12.0 +phylum Chordata root:Environmental:Aquatic:Marine:Oceanic 13.0 phylum Chordata root:Host-associated:Mammals:Digestive system 5.0 phylum Chordata root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 phylum Chordata root:Host-associated:Human 7.0 phylum Chordata root:Host-associated:Plants 2.0 phylum Chordata root:Host-associated:Human:Digestive system:Large intestine 2.0 phylum Chordata root:Engineered:Bioreactor 2.0 +phylum Chordata root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Chordata root:Engineered:Wastewater:Activated Sludge 2.0 phylum Chordata root:Host-associated:Human:Skin 8.0 phylum Chordata root:Mixed 2.0 -phylum Chordata root:Host-associated:Mammals 4.0 +phylum Chordata root:Host-associated:Mammals 5.0 phylum Chordata root:Host-associated:Amphibia 2.0 phylum Chordata root:Host-associated:Human:Digestive system:Intestine 1.0 phylum Chordata root:Engineered:Food production:Fermented beverages 2.0 phylum Chordata root:Host-associated:Human:Reproductive system:Vagina 2.0 phylum Chordata root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Chordata root:Host-associated:Human:Digestive system:Oral 10.0 -phylum Chordata root:Engineered:Food production:Dairy products 1.0 +phylum Chordata root:Engineered:Food production:Dairy products 2.0 phylum Chordata root:Environmental:Terrestrial:Soil 2.0 phylum Chordata root:Environmental:Aquatic:Marine:Sediment 5.0 phylum Chordata root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -33040,8 +33860,8 @@ phylum Chordata root:Environmental:Aquatic:Marine:Brackish 1.0 phylum Chordata root:Host-associated:Human:Reproductive system:Female 1.0 phylum Chordata root:Environmental:Aquatic:Marine:Marginal Sea 3.0 phylum Chordata root:Environmental:Aquatic:Marine:Pelagic 2.0 -phylum Chordata root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Chordata root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +phylum Chordata root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 phylum Chordata root:Host-associated:Insecta 1.0 phylum Chordata root:Engineered:Built environment 3.0 phylum Chordata root:Host-associated:Birds:Digestive system 1.0 @@ -33063,13 +33883,14 @@ phylum Chordata root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkali phylum Chordata root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 family Phyllobacteriaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Phyllobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Phyllobacteriaceae root:Environmental:Aquatic:Marine 8.0 +family Phyllobacteriaceae root:Environmental:Aquatic:Marine 19.0 family Phyllobacteriaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Phyllobacteriaceae root:Environmental:Terrestrial:Geologic 1.0 family Phyllobacteriaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Phyllobacteriaceae root:Host-associated:Human 1.0 family Phyllobacteriaceae root:Host-associated:Plants 2.0 family Phyllobacteriaceae root:Engineered:Bioreactor 3.0 +family Phyllobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Phyllobacteriaceae root:Engineered:Wastewater:Activated Sludge 8.0 family Phyllobacteriaceae root:Mixed 1.0 family Phyllobacteriaceae root:Host-associated:Mammals 3.0 @@ -33080,6 +33901,7 @@ family Phyllobacteriaceae root:Environmental:Terrestrial:Soil 2.0 family Phyllobacteriaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Phyllobacteriaceae root:Environmental:Aquatic:Sediment 1.0 family Phyllobacteriaceae root:Host-associated:Porifera 1.0 +family Phyllobacteriaceae root:Environmental:Aquatic:Freshwater 1.0 family Phyllobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Phyllobacteriaceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 family Phyllobacteriaceae root:Engineered:Solid waste:Composting 3.0 @@ -33095,6 +33917,7 @@ family Phyllobacteriaceae root:Host-associated:Arthropoda:Respiratory system:Gil family Phyllobacteriaceae root:Engineered:Biogas plant 1.0 family Phyllobacteriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Phyllobacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +family Phyllobacteriaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Phyllobacteriaceae root:Engineered:Biotransformation 1.0 family Phyllobacteriaceae root:Host-associated:Microbial 1.0 family Nocardiaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -33118,6 +33941,7 @@ family Nocardiaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Nocardiaceae root:Engineered:Lab Synthesis 1.0 family Nocardiaceae root:Engineered:Solid waste:Composting 4.0 family Nocardiaceae root:Environmental:Terrestrial:Soil:Desert 1.0 +family Nocardiaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Nocardiaceae root:Host-associated:Plants:Root 1.0 family Nocardiaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 family Nocardiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -33138,7 +33962,8 @@ family Methylobacteriaceae root:Engineered:Food production:Fermented beverages 1 family Methylobacteriaceae root:Host-associated:Plants:Phylloplane 3.0 family Methylobacteriaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Methylobacteriaceae root:Environmental:Terrestrial:Soil 1.0 -family Methylobacteriaceae root:Environmental:Aquatic:Marine:Sediment 6.0 +family Methylobacteriaceae root:Environmental:Aquatic:Marine:Sediment 7.0 +family Methylobacteriaceae root:Engineered:Lab enrichment 1.0 family Methylobacteriaceae root:Host-associated:Human:Digestive system 1.0 family Methylobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Methylobacteriaceae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 @@ -33149,11 +33974,11 @@ family Methylobacteriaceae root:Host-associated:Insecta:Digestive system 1.0 family Methylobacteriaceae root:Host-associated:Fish:Digestive system:Foregut 2.0 family Methylobacteriaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Methylobacteriaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 +family Methylobacteriaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Methylobacteriaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Methylobacteriaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Methylobacteriaceae root:Host-associated:Insecta 1.0 family Methylobacteriaceae root:Engineered:Built environment 4.0 -family Methylobacteriaceae root:Engineered:Lab enrichment 1.0 family Methylobacteriaceae root:Engineered:Food production:Fermented vegetables 1.0 family Methylobacteriaceae root:Host-associated:Birds 1.0 family Methylobacteriaceae root:Engineered 1.0 @@ -33168,7 +33993,7 @@ family Staphylococcaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 family Staphylococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 22.0 family Staphylococcaceae root:Environmental:Aquatic:Marine 4.0 family Staphylococcaceae root:Host-associated:Fish 1.0 -family Staphylococcaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Staphylococcaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Staphylococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Staphylococcaceae root:Environmental:Terrestrial:Geologic 1.0 family Staphylococcaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -33180,7 +34005,8 @@ family Staphylococcaceae root:Host-associated:Human:Skin 27.0 family Staphylococcaceae root:Mixed 6.0 family Staphylococcaceae root:Host-associated:Mammals 2.0 family Staphylococcaceae root:Host-associated:Amphibia 1.0 -family Staphylococcaceae root:Engineered:Food production:Fermented beverages 2.0 +family Staphylococcaceae root:Host-associated:Human:Digestive system:Intestine 1.0 +family Staphylococcaceae root:Engineered:Food production:Fermented beverages 3.0 family Staphylococcaceae root:Engineered:Wastewater 1.0 family Staphylococcaceae root:Host-associated:Human:Reproductive system:Vagina 3.0 family Staphylococcaceae root:Host-associated:Human:Digestive system:Oral 2.0 @@ -33188,7 +34014,7 @@ family Staphylococcaceae root:Engineered:Food production:Dairy products 10.0 family Staphylococcaceae root:Host-associated:Plants:Phylloplane 1.0 family Staphylococcaceae root:Environmental:Terrestrial:Soil 4.0 family Staphylococcaceae root:Environmental:Aquatic:Marine:Sediment 7.0 -family Staphylococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Staphylococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 family Staphylococcaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Staphylococcaceae root:Host-associated:Porifera 1.0 family Staphylococcaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -33205,7 +34031,7 @@ family Staphylococcaceae root:Host-associated:Arthropoda:Digestive system:Gut 1. family Staphylococcaceae root:Engineered:Lab enrichment:Defined media 1.0 family Staphylococcaceae root:Host-associated:Plants:Root 1.0 family Staphylococcaceae root:Engineered:Food production 4.0 -family Staphylococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +family Staphylococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family Staphylococcaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 family Staphylococcaceae root:Host-associated:Human:Skin:Naris 1.0 family Staphylococcaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 5.0 @@ -33214,13 +34040,14 @@ family Staphylococcaceae root:Engineered:Modeled 2.0 family Staphylococcaceae root:Host-associated:Insecta:Digestive system 2.0 family Staphylococcaceae root:Host-associated 1.0 family Staphylococcaceae root:Engineered:Bioreactor:Continuous culture 1.0 +family Staphylococcaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Staphylococcaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Staphylococcaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -family Staphylococcaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 family Staphylococcaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Staphylococcaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 family Staphylococcaceae root:Environmental:Aquatic:Freshwater:Ice 1.0 family Staphylococcaceae root:Host-associated:Insecta 3.0 -family Staphylococcaceae root:Engineered:Built environment 9.0 +family Staphylococcaceae root:Engineered:Built environment 10.0 family Staphylococcaceae root:Host-associated:Birds:Digestive system 1.0 family Staphylococcaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Staphylococcaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 2.0 @@ -33259,11 +34086,12 @@ genus Rhodococcus root:Host-associated:Plants:Rhizosphere 1.0 genus Rhodococcus root:Environmental:Terrestrial:Soil 11.0 genus Rhodococcus root:Environmental:Aquatic:Marine:Sediment 2.0 genus Rhodococcus root:Engineered:Lab Synthesis 1.0 +genus Rhodococcus root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Rhodococcus root:Environmental:Aquatic:Freshwater 1.0 genus Rhodococcus root:Engineered:Solid waste:Composting 4.0 genus Rhodococcus root:Environmental:Terrestrial:Soil:Desert 3.0 +genus Rhodococcus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Rhodococcus root:Host-associated:Plants:Root 1.0 -genus Rhodococcus root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Rhodococcus root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Rhodococcus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Rhodococcus root:Engineered:Biogas plant 2.0 @@ -33282,14 +34110,15 @@ genus Stenotrophomonas root:Engineered:Wastewater:Activated Sludge 1.0 genus Stenotrophomonas root:Host-associated:Plants:Rhizosphere 1.0 genus Stenotrophomonas root:Environmental:Terrestrial:Soil 2.0 genus Stenotrophomonas root:Environmental:Aquatic:Marine:Sediment 4.0 +genus Stenotrophomonas root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Stenotrophomonas root:Environmental:Aquatic 3.0 genus Stenotrophomonas root:Host-associated:Porifera 1.0 genus Stenotrophomonas root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Stenotrophomonas root:Engineered:Lab Synthesis 1.0 genus Stenotrophomonas root:Host-associated:Mammals:Digestive system:Stomach 1.0 +genus Stenotrophomonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Stenotrophomonas root:Engineered:Solid waste:Composting 2.0 genus Stenotrophomonas root:Host-associated:Plants:Root 1.0 -genus Stenotrophomonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Stenotrophomonas root:Engineered:Wastewater:Water and sludge 1.0 genus Stenotrophomonas root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Stenotrophomonas root:Environmental:Aquatic:Freshwater:Ice 1.0 @@ -33302,7 +34131,7 @@ genus Stenotrophomonas root:Environmental:Aquatic:Non-marine Saline and Alkaline genus Stenotrophomonas root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Stenotrophomonas root:Host-associated:Algae:Brown Algae 1.0 genus Mesorhizobium root:Environmental:Aquatic:Freshwater:Sediment 1.0 -genus Mesorhizobium root:Environmental:Aquatic:Marine 1.0 +genus Mesorhizobium root:Environmental:Aquatic:Marine 2.0 genus Mesorhizobium root:Environmental:Terrestrial:Geologic 1.0 genus Mesorhizobium root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Mesorhizobium root:Engineered:Bioreactor 2.0 @@ -33317,10 +34146,11 @@ genus Mesorhizobium root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Mesorhizobium root:Environmental:Terrestrial:Soil:Mine 1.0 genus Mesorhizobium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Mesorhizobium root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 +genus Mesorhizobium root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Mesorhizobium root:Host-associated:Cnidaria 1.0 genus Mesorhizobium root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 genus Methylobacterium root:Environmental:Aquatic:Freshwater:Sediment 1.0 -genus Methylobacterium root:Environmental:Aquatic:Marine 8.0 +genus Methylobacterium root:Environmental:Aquatic:Marine 9.0 genus Methylobacterium root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Methylobacterium root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Methylobacterium root:Host-associated:Plants 8.0 @@ -33333,7 +34163,8 @@ genus Methylobacterium root:Engineered:Food production:Fermented beverages 1.0 genus Methylobacterium root:Host-associated:Plants:Phylloplane 4.0 genus Methylobacterium root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Methylobacterium root:Environmental:Terrestrial:Soil 3.0 -genus Methylobacterium root:Environmental:Aquatic:Marine:Sediment 9.0 +genus Methylobacterium root:Environmental:Aquatic:Marine:Sediment 10.0 +genus Methylobacterium root:Engineered:Lab enrichment 1.0 genus Methylobacterium root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Methylobacterium root:Host-associated:Human:Digestive system 1.0 genus Methylobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 @@ -33345,12 +34176,11 @@ genus Methylobacterium root:Host-associated:Insecta:Digestive system 1.0 genus Methylobacterium root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Methylobacterium root:Engineered:Bioreactor:Continuous culture 1.0 genus Methylobacterium root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -genus Methylobacterium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Methylobacterium root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 genus Methylobacterium root:Environmental:Aquatic:Freshwater:Ice 2.0 genus Methylobacterium root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Methylobacterium root:Host-associated:Insecta 1.0 genus Methylobacterium root:Engineered:Built environment 4.0 -genus Methylobacterium root:Engineered:Lab enrichment 1.0 genus Methylobacterium root:Host-associated:Birds 1.0 genus Methylobacterium root:Engineered 1.0 genus Methylobacterium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 @@ -33372,19 +34202,22 @@ genus Staphylococcus root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Staphylococcus root:Host-associated:Human 9.0 genus Staphylococcus root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Staphylococcus root:Engineered:Bioreactor 3.0 +genus Staphylococcus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Staphylococcus root:Engineered:Wastewater:Activated Sludge 1.0 genus Staphylococcus root:Host-associated:Human:Skin 26.0 genus Staphylococcus root:Mixed 6.0 genus Staphylococcus root:Host-associated:Mammals 1.0 +genus Staphylococcus root:Host-associated:Human:Digestive system:Intestine 1.0 +genus Staphylococcus root:Engineered:Food production:Fermented beverages 1.0 genus Staphylococcus root:Engineered:Wastewater 1.0 genus Staphylococcus root:Host-associated:Human:Reproductive system:Vagina 2.0 -genus Staphylococcus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Staphylococcus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Staphylococcus root:Host-associated:Human:Digestive system:Oral 2.0 genus Staphylococcus root:Engineered:Food production:Dairy products 11.0 genus Staphylococcus root:Host-associated:Plants:Phylloplane 1.0 genus Staphylococcus root:Environmental:Terrestrial:Soil 3.0 genus Staphylococcus root:Environmental:Aquatic:Marine:Sediment 11.0 -genus Staphylococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Staphylococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 genus Staphylococcus root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Staphylococcus root:Environmental:Aquatic:Sediment 1.0 genus Staphylococcus root:Host-associated:Porifera 1.0 @@ -33403,7 +34236,7 @@ genus Staphylococcus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Staphylococcus root:Engineered:Lab enrichment:Defined media 1.0 genus Staphylococcus root:Host-associated:Plants:Root 1.0 genus Staphylococcus root:Engineered:Food production 3.0 -genus Staphylococcus root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +genus Staphylococcus root:Host-associated:Mammals:Digestive system:Large intestine 3.0 genus Staphylococcus root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 genus Staphylococcus root:Engineered:Food production:Fermented seafood 2.0 genus Staphylococcus root:Host-associated:Human:Skin:Naris 1.0 @@ -33413,11 +34246,12 @@ genus Staphylococcus root:Host-associated:Insecta:Digestive system 2.0 genus Staphylococcus root:Host-associated 1.0 genus Staphylococcus root:Environmental:Aquatic:Marine:Brackish 1.0 genus Staphylococcus root:Engineered:Bioreactor:Continuous culture 1.0 +genus Staphylococcus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Staphylococcus root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +genus Staphylococcus root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 genus Staphylococcus root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 -genus Staphylococcus root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Staphylococcus root:Host-associated:Insecta 2.0 -genus Staphylococcus root:Engineered:Built environment 9.0 +genus Staphylococcus root:Engineered:Built environment 10.0 genus Staphylococcus root:Host-associated:Birds:Digestive system 1.0 genus Staphylococcus root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Staphylococcus root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -33441,7 +34275,7 @@ genus Staphylococcus root:Host-associated:Invertebrates 1.0 genus Staphylococcus root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 genus Ralstonia root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Ralstonia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -genus Ralstonia root:Environmental:Aquatic:Marine 4.0 +genus Ralstonia root:Environmental:Aquatic:Marine 5.0 genus Ralstonia root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 genus Ralstonia root:Host-associated:Mammals:Digestive system 1.0 genus Ralstonia root:Host-associated:Human 2.0 @@ -33464,6 +34298,7 @@ genus Ralstonia root:Environmental:Aquatic:Thermal springs 1.0 genus Ralstonia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 genus Ralstonia root:Environmental:Aquatic:Marine:Coastal 1.0 genus Ralstonia root:Engineered:Lab enrichment:Defined media 1.0 +genus Ralstonia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Ralstonia root:Host-associated:Insecta:Digestive system 1.0 genus Ralstonia root:Environmental:Terrestrial:Soil:Sand 1.0 genus Ralstonia root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -33481,6 +34316,7 @@ species Stenotrophomonas maltophilia root:Environmental:Aquatic:Thermal springs: species Stenotrophomonas maltophilia root:Engineered:Bioreactor 4.0 species Stenotrophomonas maltophilia root:Host-associated:Mammals 1.0 species Stenotrophomonas maltophilia root:Host-associated:Plants:Rhizosphere 1.0 +species Stenotrophomonas maltophilia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Stenotrophomonas maltophilia root:Environmental:Aquatic 3.0 species Stenotrophomonas maltophilia root:Host-associated:Porifera 1.0 species Stenotrophomonas maltophilia root:Host-associated:Mammals:Digestive system:Stomach 1.0 @@ -33498,16 +34334,16 @@ species Rhodococcus erythropolis root:Engineered:Bioreactor 1.0 species Mesorhizobium sp. UASWS1009 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Staphylococcus epidermidis root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Staphylococcus epidermidis root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 -species Staphylococcus epidermidis root:Environmental:Aquatic:Marine 2.0 +species Staphylococcus epidermidis root:Environmental:Aquatic:Marine 3.0 species Staphylococcus epidermidis root:Host-associated:Human 1.0 species Staphylococcus epidermidis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Staphylococcus epidermidis root:Engineered:Bioreactor 1.0 species Staphylococcus epidermidis root:Host-associated:Human:Skin 13.0 species Staphylococcus epidermidis root:Mixed 2.0 species Staphylococcus epidermidis root:Host-associated:Human:Reproductive system:Vagina 1.0 -species Staphylococcus epidermidis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Staphylococcus epidermidis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Staphylococcus epidermidis root:Environmental:Aquatic:Marine:Sediment 1.0 -species Staphylococcus epidermidis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Staphylococcus epidermidis root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 species Staphylococcus epidermidis root:Host-associated:Human:Digestive system 1.0 species Staphylococcus epidermidis root:Host-associated:Algae:Red algae 1.0 species Staphylococcus epidermidis root:Host-associated:Human:Skin:Naris 1.0 @@ -33520,7 +34356,7 @@ species Staphylococcus epidermidis root:Engineered:Bioremediation:Hydrocarbon 1. family Peptostreptococcaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 family Peptostreptococcaceae root:Host-associated:Mammals:Digestive system:Fecal 12.0 family Peptostreptococcaceae root:Host-associated:Birds:Digestive system:Fecal 4.0 -family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 27.0 +family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 30.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Peptostreptococcaceae root:Host-associated:Mammals:Digestive system 6.0 family Peptostreptococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -33531,17 +34367,22 @@ family Peptostreptococcaceae root:Environmental:Terrestrial:Soil:Agricultural 3. family Peptostreptococcaceae root:Engineered:Bioreactor 6.0 family Peptostreptococcaceae root:Engineered:Wastewater:Activated Sludge 4.0 family Peptostreptococcaceae root:Host-associated:Human:Skin 1.0 +family Peptostreptococcaceae root:Mixed 1.0 family Peptostreptococcaceae root:Host-associated:Mammals 1.0 family Peptostreptococcaceae root:Engineered:Wastewater 1.0 -family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Oral 12.0 +family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Oral 13.0 family Peptostreptococcaceae root:Engineered:Food production:Dairy products 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Peptostreptococcaceae root:Environmental:Terrestrial:Soil 2.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Sediment 4.0 +family Peptostreptococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Sediment 1.0 family Peptostreptococcaceae root:Environmental:Aquatic 1.0 +family Peptostreptococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Peptostreptococcaceae root:Engineered:Lab enrichment 1.0 family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Peptostreptococcaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 +family Peptostreptococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Peptostreptococcaceae root:Host-associated:Human:Digestive system 4.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -33551,7 +34392,6 @@ family Peptostreptococcaceae root:Host-associated:Human:Digestive system:Oral:Su family Peptostreptococcaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Peptostreptococcaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Peptostreptococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Peptostreptococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 4.0 family Peptostreptococcaceae root:Host-associated:Animal:Digestive system 3.0 family Peptostreptococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 @@ -33562,13 +34402,13 @@ family Peptostreptococcaceae root:Host-associated:Mammals:Gastrointestinal tract family Peptostreptococcaceae root:Host-associated:Birds:Digestive system:Digestive tube 1.0 family Peptostreptococcaceae root:Host-associated:Insecta 1.0 family Peptostreptococcaceae root:Host-associated:Birds:Digestive system 3.0 -family Peptostreptococcaceae root:Engineered:Lab enrichment 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Peptostreptococcaceae root:Host-associated:Animal:Digestive system:Fecal 5.0 family Peptostreptococcaceae root:Engineered:Biogas plant 3.0 family Peptostreptococcaceae root:Host-associated:Reptile 1.0 family Peptostreptococcaceae root:Host-associated:Mammals:Respiratory system 1.0 family Peptostreptococcaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Peptostreptococcaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Peptostreptococcaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 family Peptostreptococcaceae root:Host-associated:Human:Circulatory system:Blood 1.0 family Peptostreptococcaceae root:Host-associated:Mammals:Milk 1.0 @@ -33594,13 +34434,13 @@ family Syntrophobacteraceae root:Engineered:Modeled:Simulated communities (micro family Syntrophobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 family Syntrophobacteraceae root:Host-associated:Porifera 1.0 family Syntrophobacteraceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 +family Syntrophobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Syntrophobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Syntrophobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Syntrophobacteraceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Syntrophobacteraceae root:Engineered:Lab enrichment:Defined media 1.0 family Syntrophobacteraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 family Syntrophobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Syntrophobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Syntrophobacteraceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Syntrophobacteraceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Syntrophobacteraceae root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -33619,39 +34459,40 @@ family Syntrophobacteraceae root:Environmental:Aquatic:Freshwater:Wetlands:Sedim family Syntrophobacteraceae root:Engineered:Bioremediation:Hydrocarbon 1.0 family Syntrophobacteraceae root:Environmental:Aquatic:Marine:Oil seeps 1.0 family Christensenellaceae root:Environmental:Aquatic:Freshwater:Sediment 4.0 -family Christensenellaceae root:Host-associated:Mammals:Digestive system:Fecal 30.0 +family Christensenellaceae root:Host-associated:Mammals:Digestive system:Fecal 31.0 family Christensenellaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 -family Christensenellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 28.0 -family Christensenellaceae root:Host-associated:Mammals:Digestive system 10.0 +family Christensenellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 29.0 +family Christensenellaceae root:Host-associated:Mammals:Digestive system 11.0 family Christensenellaceae root:Engineered:Bioreactor 2.0 family Christensenellaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Christensenellaceae root:Engineered:Wastewater:Activated Sludge 5.0 family Christensenellaceae root:Mixed 1.0 -family Christensenellaceae root:Host-associated:Mammals 2.0 +family Christensenellaceae root:Host-associated:Mammals 3.0 family Christensenellaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Christensenellaceae root:Engineered:Food production:Fermented beverages 1.0 family Christensenellaceae root:Engineered:Wastewater 1.0 family Christensenellaceae root:Environmental:Terrestrial:Soil 1.0 family Christensenellaceae root:Environmental:Aquatic:Marine:Sediment 3.0 +family Christensenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Christensenellaceae root:Environmental:Aquatic:Sediment 2.0 -family Christensenellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 +family Christensenellaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Christensenellaceae root:Engineered:Lab enrichment 1.0 +family Christensenellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 family Christensenellaceae root:Host-associated:Birds:Digestive system:Ceca 3.0 family Christensenellaceae root:Host-associated:Human:Digestive system 3.0 family Christensenellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 -family Christensenellaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +family Christensenellaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 family Christensenellaceae root:Engineered:Lab enrichment:Defined media 3.0 family Christensenellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Christensenellaceae root:Host-associated:Mammals:Digestive system:Large intestine 4.0 family Christensenellaceae root:Environmental:Aquatic:Estuary 1.0 family Christensenellaceae root:Host-associated:Animal:Digestive system 1.0 -family Christensenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Christensenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 family Christensenellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Christensenellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Christensenellaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Christensenellaceae root:Host-associated:Mammals:Gastrointestinal tract 3.0 family Christensenellaceae root:Host-associated:Birds:Digestive system 1.0 -family Christensenellaceae root:Engineered:Lab enrichment 1.0 family Christensenellaceae root:Engineered:Biogas plant 1.0 family Christensenellaceae root:Host-associated:Reptile 1.0 family Christensenellaceae root:Engineered 1.0 @@ -33661,7 +34502,7 @@ family Christensenellaceae root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bi genus Romboutsia root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Romboutsia root:Host-associated:Mammals:Digestive system:Fecal 5.0 genus Romboutsia root:Host-associated:Birds:Digestive system:Fecal 3.0 -genus Romboutsia root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 +genus Romboutsia root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 genus Romboutsia root:Host-associated:Mammals:Digestive system 6.0 genus Romboutsia root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Romboutsia root:Environmental:Terrestrial:Soil:Agricultural 3.0 @@ -33673,6 +34514,7 @@ genus Romboutsia root:Engineered:Wastewater 1.0 genus Romboutsia root:Engineered:Food production:Dairy products 1.0 genus Romboutsia root:Environmental:Aquatic:Marine:Sediment 3.0 genus Romboutsia root:Environmental:Aquatic:Sediment 1.0 +genus Romboutsia root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Romboutsia root:Host-associated:Human:Digestive system 1.0 genus Romboutsia root:Environmental:Aquatic:Marine:Coastal 1.0 genus Romboutsia root:Engineered:Solid waste:Composting 3.0 @@ -33681,6 +34523,7 @@ genus Romboutsia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Romboutsia root:Environmental:Aquatic:Estuary 1.0 genus Romboutsia root:Host-associated:Animal:Digestive system 1.0 genus Romboutsia root:Engineered:Wastewater:Industrial wastewater 1.0 +genus Romboutsia root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Romboutsia root:Host-associated:Birds:Digestive system 2.0 genus Romboutsia root:Host-associated:Animal:Digestive system:Fecal 2.0 genus Romboutsia root:Engineered:Biogas plant 2.0 @@ -33688,7 +34531,7 @@ genus Romboutsia root:Host-associated:Mammals:Respiratory system 1.0 genus Romboutsia root:Host-associated:Animal 1.0 genus Romboutsia root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Phenylobacterium root:Environmental:Aquatic:Freshwater:Sediment 2.0 -genus Phenylobacterium root:Environmental:Aquatic:Marine 2.0 +genus Phenylobacterium root:Environmental:Aquatic:Marine 3.0 genus Phenylobacterium root:Environmental:Terrestrial:Geologic 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Forest soil 7.0 genus Phenylobacterium root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -33709,24 +34552,24 @@ genus Phenylobacterium root:Environmental:Terrestrial:Soil 29.0 genus Phenylobacterium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Phenylobacterium root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +genus Phenylobacterium root:Engineered:Lab enrichment 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Wetlands 3.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Phenylobacterium root:Host-associated:Plants:Rhizosphere:Soil 8.0 genus Phenylobacterium root:Environmental:Aquatic:Freshwater 1.0 genus Phenylobacterium root:Engineered:Solid waste:Composting 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Desert 1.0 genus Phenylobacterium root:Host-associated:Plants:Root 3.0 -genus Phenylobacterium root:Host-associated:Plants:Rhizosphere:Soil 7.0 genus Phenylobacterium root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Phenylobacterium root:Host-associated:Insecta:Digestive system 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Mine 1.0 genus Phenylobacterium root:Engineered:Bioreactor:Continuous culture 1.0 genus Phenylobacterium root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -genus Phenylobacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Phenylobacterium root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Phenylobacterium root:Engineered:Wastewater:Water and sludge 1.0 genus Phenylobacterium root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -genus Phenylobacterium root:Engineered:Lab enrichment 1.0 genus Phenylobacterium root:Environmental:Aquatic:Aquaculture 1.0 genus Phenylobacterium root:Engineered:Biotransformation 1.0 genus Phenylobacterium root:Environmental:Terrestrial:Soil:Mine drainage 1.0 @@ -33734,8 +34577,8 @@ genus Phenylobacterium root:Host-associated:Human:Circulatory system 1.0 genus Bellilinea root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Bellilinea root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Bellilinea root:Engineered:Bioreactor 1.0 -genus Bellilinea root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Bellilinea root:Engineered:Lab enrichment 1.0 +genus Bellilinea root:Environmental:Aquatic:Thermal springs:Sediment 1.0 species Synergistetes bacterium JGI 0000079-D21 root:Environmental:Aquatic:Freshwater:Sediment 2.0 species Synergistetes bacterium JGI 0000079-D21 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Synergistetes bacterium JGI 0000079-D21 root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -33782,9 +34625,9 @@ genus Pedosphaera root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Pedosphaera root:Host-associated:Plants:Rhizosphere 1.0 genus Pedosphaera root:Environmental:Terrestrial:Soil 9.0 genus Pedosphaera root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +genus Pedosphaera root:Engineered:Lab enrichment 1.0 genus Pedosphaera root:Engineered:Solid waste:Composting 1.0 genus Pedosphaera root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Pedosphaera root:Engineered:Lab enrichment 1.0 genus Pedosphaera root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus Pedosphaera root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 genus Syntrophus root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -33808,6 +34651,7 @@ genus Syntrophus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Syntrophus root:Engineered:Wastewater:Water and sludge 4.0 genus Syntrophus root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Syntrophus root:Engineered:Biogas plant 1.0 +genus Syntrophus root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Bacteroidetes bacterium ADurb.BinA104 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Bacteroidetes bacterium ADurb.BinA104 root:Environmental:Terrestrial:Soil:Agricultural 2.0 species Bacteroidetes bacterium ADurb.BinA104 root:Engineered:Bioreactor 3.0 @@ -33818,7 +34662,7 @@ species Bacteroidetes bacterium ADurb.BinA104 root:Engineered:Biogas plant:Wet f species Bacteroidetes bacterium ADurb.BinA104 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Bacteroidetes bacterium ADurb.BinA104 root:Engineered:Wastewater:Industrial wastewater 3.0 species Bacteroidetes bacterium ADurb.BinA104 root:Host-associated:Insecta:Digestive system 1.0 -species Bacteroidetes bacterium ADurb.BinA104 root:Engineered:Wastewater:Water and sludge 1.0 +species Bacteroidetes bacterium ADurb.BinA104 root:Engineered:Wastewater:Water and sludge 2.0 species Chloroflexi bacterium CSP1-4 root:Environmental:Aquatic:Freshwater:Sediment 2.0 species Chloroflexi bacterium CSP1-4 root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Chloroflexi bacterium CSP1-4 root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -33860,6 +34704,7 @@ phylum Candidatus Diapherotrites root:Environmental:Aquatic:Estuary:Sediment 2.0 phylum Candidatus Diapherotrites root:Environmental:Aquatic:Marine:Sediment 3.0 phylum Candidatus Diapherotrites root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Candidatus Diapherotrites root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 +phylum Candidatus Diapherotrites root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Candidatus Micrarchaeota root:Environmental:Aquatic:Freshwater:Sediment 1.0 phylum Candidatus Micrarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 phylum Candidatus Micrarchaeota root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -33870,7 +34715,7 @@ class Thermococci root:Environmental:Aquatic:Marine 3.0 class Thermococci root:Environmental:Aquatic:Marine:Oceanic 1.0 class Thermococci root:Environmental:Aquatic:Estuary:Sediment 2.0 class Thermococci root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Thermococci root:Environmental:Aquatic:Marine:Sediment 18.0 +class Thermococci root:Environmental:Aquatic:Marine:Sediment 19.0 class Thermococci root:Environmental:Aquatic:Marine:Coastal 2.0 class Thermococci root:Environmental:Aquatic:Marine:Cold seeps 1.0 class Thermococci root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 @@ -33898,7 +34743,7 @@ class Thermoprotei root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 13.0 class Thermoprotei root:Mixed 1.0 class Thermoprotei root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Thermoprotei root:Environmental:Terrestrial:Soil 1.0 -class Thermoprotei root:Environmental:Aquatic:Marine:Sediment 2.0 +class Thermoprotei root:Environmental:Aquatic:Marine:Sediment 3.0 class Thermoprotei root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Thermoprotei root:Environmental:Aquatic:Thermal springs 3.0 class Thermoprotei root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -33932,11 +34777,13 @@ order Nitrososphaerales root:Environmental:Terrestrial:Soil:Silt 1.0 order Nitrososphaerales root:Host-associated:Plants:Rhizosphere 15.0 order Nitrososphaerales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Nitrososphaerales root:Environmental:Terrestrial:Soil 27.0 -order Nitrososphaerales root:Environmental:Aquatic:Marine:Sediment 17.0 +order Nitrososphaerales root:Environmental:Aquatic:Marine:Sediment 18.0 +order Nitrososphaerales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Nitrososphaerales root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 order Nitrososphaerales root:Host-associated:Porifera 2.0 order Nitrososphaerales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Nitrososphaerales root:Environmental:Terrestrial:Soil:Grasslands 2.0 +order Nitrososphaerales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Nitrososphaerales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Nitrososphaerales root:Environmental:Aquatic:Marine:Coastal 3.0 order Nitrososphaerales root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -33946,7 +34793,6 @@ order Nitrososphaerales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 order Nitrososphaerales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Nitrososphaerales root:Environmental:Terrestrial:Deep subsurface 1.0 order Nitrososphaerales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 5.0 -order Nitrososphaerales root:Host-associated:Plants:Rhizosphere:Soil 4.0 order Nitrososphaerales root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order Nitrososphaerales root:Engineered:Wastewater:Industrial wastewater 1.0 order Nitrososphaerales root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 @@ -33975,7 +34821,7 @@ order Methanomassiliicoccales root:Engineered:Wastewater:Activated Sludge 4.0 order Methanomassiliicoccales root:Engineered:Food production:Fermented beverages 1.0 order Methanomassiliicoccales root:Engineered:Wastewater 1.0 order Methanomassiliicoccales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Methanomassiliicoccales root:Environmental:Aquatic:Marine:Sediment 8.0 +order Methanomassiliicoccales root:Environmental:Aquatic:Marine:Sediment 9.0 order Methanomassiliicoccales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Methanomassiliicoccales root:Host-associated:Birds:Digestive system:Ceca 1.0 order Methanomassiliicoccales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -34037,16 +34883,6 @@ family Methanomassiliicoccaceae root:Environmental:Aquatic:Freshwater:Wetlands:S family Methanomassiliicoccaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Methanomassiliicoccaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 family Methanomassiliicoccaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Sediment 3.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine 1.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Estuary:Sediment 2.0 -family Candidatus Methanoperedenaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Candidatus Methanoperedenaceae root:Environmental:Terrestrial:Soil 2.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine:Sediment 3.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 4.0 -family Candidatus Methanoperedenaceae root:Engineered:Bioreactor:Continuous culture 1.0 -family Candidatus Methanoperedenaceae root:Environmental:Aquatic:Freshwater:Storm water 1.0 genus Methanocella root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Methanocella root:Environmental:Aquatic:Estuary:Sediment 2.0 genus Methanocella root:Environmental:Terrestrial:Soil:Agricultural 3.0 @@ -34087,14 +34923,14 @@ genus Methanobrevibacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Fecal 4.0 genus Methanobrevibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Methanobrevibacter root:Environmental:Aquatic:Marine 3.0 -genus Methanobrevibacter root:Host-associated:Mammals:Digestive system 2.0 +genus Methanobrevibacter root:Host-associated:Mammals:Digestive system 3.0 genus Methanobrevibacter root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Methanobrevibacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Methanobrevibacter root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Methanobrevibacter root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Methanobrevibacter root:Engineered:Bioreactor 4.0 genus Methanobrevibacter root:Environmental:Terrestrial:Soil:Permafrost 2.0 -genus Methanobrevibacter root:Mixed 1.0 +genus Methanobrevibacter root:Mixed 2.0 genus Methanobrevibacter root:Host-associated:Mammals 1.0 genus Methanobrevibacter root:Engineered:Food production:Fermented beverages 2.0 genus Methanobrevibacter root:Engineered:Wastewater 2.0 @@ -34102,24 +34938,26 @@ genus Methanobrevibacter root:Host-associated:Human:Digestive system:Oral 2.0 genus Methanobrevibacter root:Host-associated:Plants:Rhizosphere 2.0 genus Methanobrevibacter root:Environmental:Terrestrial:Soil 3.0 genus Methanobrevibacter root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Methanobrevibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 15.0 genus Methanobrevibacter root:Environmental:Terrestrial:Soil:Grasslands 2.0 genus Methanobrevibacter root:Engineered:Solid waste:Composting 1.0 genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 -genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 genus Methanobrevibacter root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Methanobrevibacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Methanobrevibacter root:Host-associated:Animal:Digestive system 1.0 genus Methanobrevibacter root:Host-associated:Insecta:Digestive system 1.0 genus Methanobrevibacter root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Methanobrevibacter root:Engineered:Biogas plant 1.0 -genus Methanobrevibacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Methanobrevibacter root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 genus Methanobrevibacter root:Engineered:Solid waste:Solid animal waste 1.0 species Methanosaeta sp. ARCH root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Methanosaeta sp. ARCH root:Environmental:Aquatic:Estuary:Sediment 1.0 species Methanosaeta sp. ARCH root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 species Methanosaeta sp. ARCH root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +species Methanosaeta sp. ARCH root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Methanocella paludicola root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Methanocella paludicola root:Environmental:Aquatic:Estuary:Sediment 1.0 species Methanocella paludicola root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -34147,7 +34985,7 @@ species thaumarchaeote enrichment culture root:Environmental:Aquatic:Estuary:Sed species thaumarchaeote enrichment culture root:Engineered:Food production:Fermented beverages 1.0 class Coscinodiscophyceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 class Coscinodiscophyceae root:Environmental:Aquatic:Marine 59.0 -class Coscinodiscophyceae root:Environmental:Aquatic:Marine:Oceanic 16.0 +class Coscinodiscophyceae root:Environmental:Aquatic:Marine:Oceanic 17.0 class Coscinodiscophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 class Coscinodiscophyceae root:Environmental:Aquatic:Estuary:Sediment 3.0 class Coscinodiscophyceae root:Mixed 1.0 @@ -34165,7 +35003,7 @@ class Coscinodiscophyceae root:Host-associated:Algae 1.0 class Coscinodiscophyceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Thalassiosirales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Thalassiosirales root:Environmental:Aquatic:Marine 34.0 -order Thalassiosirales root:Environmental:Aquatic:Marine:Oceanic 6.0 +order Thalassiosirales root:Environmental:Aquatic:Marine:Oceanic 7.0 order Thalassiosirales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Thalassiosirales root:Environmental:Aquatic:Estuary:Sediment 3.0 order Thalassiosirales root:Mixed 1.0 @@ -34180,7 +35018,7 @@ order Thalassiosirales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminate order Thalassiosirales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Thalassiosiraceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Thalassiosiraceae root:Environmental:Aquatic:Marine 17.0 -family Thalassiosiraceae root:Environmental:Aquatic:Marine:Oceanic 4.0 +family Thalassiosiraceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Thalassiosiraceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Thalassiosiraceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Thalassiosiraceae root:Mixed 1.0 @@ -34191,10 +35029,10 @@ family Thalassiosiraceae root:Environmental:Aquatic:Marine:Coastal 3.0 family Thalassiosiraceae root:Environmental:Aquatic:Estuary 10.0 family Streptococcaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Streptococcaceae root:Host-associated:Mammals:Digestive system:Fecal 16.0 -family Streptococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +family Streptococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 family Streptococcaceae root:Host-associated:Birds:Digestive system:Fecal 3.0 family Streptococcaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -family Streptococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 86.0 +family Streptococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 89.0 family Streptococcaceae root:Environmental:Aquatic:Marine 3.0 family Streptococcaceae root:Host-associated:Fish 1.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -34202,7 +35040,7 @@ family Streptococcaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Streptococcaceae root:Host-associated:Mammals:Digestive system 7.0 family Streptococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Streptococcaceae root:Environmental:Terrestrial:Soil:Forest soil 4.0 -family Streptococcaceae root:Host-associated:Human 14.0 +family Streptococcaceae root:Host-associated:Human 15.0 family Streptococcaceae root:Engineered:Food production:Silage fermentation 1.0 family Streptococcaceae root:Host-associated:Human:Digestive system:Large intestine 6.0 family Streptococcaceae root:Engineered:Bioreactor 3.0 @@ -34212,24 +35050,27 @@ family Streptococcaceae root:Host-associated:Human:Skin 23.0 family Streptococcaceae root:Mixed 9.0 family Streptococcaceae root:Host-associated:Mammals 5.0 family Streptococcaceae root:Host-associated:Human:Digestive system:Intestine 1.0 -family Streptococcaceae root:Engineered:Food production:Fermented beverages 6.0 +family Streptococcaceae root:Engineered:Food production:Fermented beverages 7.0 family Streptococcaceae root:Engineered:Wastewater 3.0 family Streptococcaceae root:Host-associated:Human:Reproductive system:Vagina 11.0 -family Streptococcaceae root:Host-associated:Human:Digestive system:Oral 62.0 -family Streptococcaceae root:Engineered:Food production:Dairy products 25.0 +family Streptococcaceae root:Host-associated:Human:Digestive system:Oral 63.0 +family Streptococcaceae root:Engineered:Food production:Dairy products 27.0 family Streptococcaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Streptococcaceae root:Environmental:Terrestrial:Soil 6.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Sediment 11.0 family Streptococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 4.0 +family Streptococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Streptococcaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Streptococcaceae root:Environmental:Aquatic:Sediment 1.0 family Streptococcaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Streptococcaceae root:Engineered:Lab enrichment 1.0 family Streptococcaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 family Streptococcaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Streptococcaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Streptococcaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 family Streptococcaceae root:Host-associated:Birds:Digestive system:Ceca 3.0 +family Streptococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Streptococcaceae root:Host-associated:Human:Digestive system 20.0 family Streptococcaceae root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -34241,8 +35082,7 @@ family Streptococcaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Streptococcaceae root:Engineered:Food production 7.0 family Streptococcaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Streptococcaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Streptococcaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 -family Streptococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 4.0 +family Streptococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 5.0 family Streptococcaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 family Streptococcaceae root:Engineered:Food production:Fermented seafood 2.0 family Streptococcaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -34251,7 +35091,7 @@ family Streptococcaceae root:Engineered:Modeled:Simulated communities (sequence family Streptococcaceae root:Host-associated:Animal:Digestive system 1.0 family Streptococcaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Streptococcaceae root:Engineered:Modeled 1.0 -family Streptococcaceae root:Host-associated:Insecta:Digestive system 1.0 +family Streptococcaceae root:Host-associated:Insecta:Digestive system 2.0 family Streptococcaceae root:Host-associated 3.0 family Streptococcaceae root:Host-associated:Fish:Digestive system 1.0 family Streptococcaceae root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -34261,7 +35101,7 @@ family Streptococcaceae root:Host-associated:Fish:Digestive system:Foregut 3.0 family Streptococcaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Streptococcaceae root:Host-associated:Human:Reproductive system:Female 2.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -family Streptococcaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Streptococcaceae root:Engineered:Wastewater:Water and sludge 3.0 family Streptococcaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 family Streptococcaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Streptococcaceae root:Host-associated:Mammals:Gastrointestinal tract 3.0 @@ -34272,7 +35112,6 @@ family Streptococcaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Streptococcaceae root:Host-associated:Insecta 4.0 family Streptococcaceae root:Engineered:Built environment 10.0 family Streptococcaceae root:Host-associated:Birds:Digestive system 1.0 -family Streptococcaceae root:Engineered:Lab enrichment 1.0 family Streptococcaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Streptococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Streptococcaceae root:Host-associated:Animal:Digestive system:Fecal 3.0 @@ -34313,7 +35152,7 @@ family Competibacteraceae root:Engineered:Bioreactor:Continuous culture 1.0 family Competibacteraceae root:Engineered:Wastewater:Water and sludge 2.0 genus Thalassiosira root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Thalassiosira root:Environmental:Aquatic:Marine 17.0 -genus Thalassiosira root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Thalassiosira root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Thalassiosira root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Thalassiosira root:Environmental:Aquatic:Estuary:Sediment 3.0 genus Thalassiosira root:Mixed 1.0 @@ -34340,17 +35179,17 @@ genus Acidovorax root:Engineered:Wastewater:Industrial wastewater 1.0 genus Acidovorax root:Engineered:Wastewater:Water and sludge 1.0 genus Streptococcus root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Streptococcus root:Host-associated:Mammals:Digestive system:Fecal 22.0 -genus Streptococcus root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 +genus Streptococcus root:Host-associated:Human:Digestive system:Oral:Saliva 28.0 genus Streptococcus root:Host-associated:Birds:Digestive system:Fecal 4.0 genus Streptococcus root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -genus Streptococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 73.0 +genus Streptococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 78.0 genus Streptococcus root:Environmental:Aquatic:Marine 4.0 genus Streptococcus root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Streptococcus root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Streptococcus root:Host-associated:Mammals:Digestive system 9.0 genus Streptococcus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 genus Streptococcus root:Environmental:Terrestrial:Soil:Forest soil 2.0 -genus Streptococcus root:Host-associated:Human 16.0 +genus Streptococcus root:Host-associated:Human 17.0 genus Streptococcus root:Host-associated:Plants 1.0 genus Streptococcus root:Host-associated:Human:Digestive system:Large intestine 6.0 genus Streptococcus root:Engineered:Bioreactor 3.0 @@ -34360,23 +35199,27 @@ genus Streptococcus root:Host-associated:Human:Skin 23.0 genus Streptococcus root:Mixed 9.0 genus Streptococcus root:Host-associated:Mammals 5.0 genus Streptococcus root:Host-associated:Human:Digestive system:Intestine 1.0 -genus Streptococcus root:Engineered:Food production:Fermented beverages 3.0 +genus Streptococcus root:Engineered:Food production:Fermented beverages 4.0 genus Streptococcus root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 genus Streptococcus root:Engineered:Wastewater 4.0 genus Streptococcus root:Host-associated:Human:Reproductive system:Vagina 11.0 -genus Streptococcus root:Host-associated:Human:Digestive system:Oral 63.0 -genus Streptococcus root:Engineered:Food production:Dairy products 22.0 +genus Streptococcus root:Host-associated:Human:Digestive system:Oral 64.0 +genus Streptococcus root:Engineered:Food production:Dairy products 24.0 genus Streptococcus root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Streptococcus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Streptococcus root:Environmental:Terrestrial:Soil 6.0 -genus Streptococcus root:Environmental:Aquatic:Marine:Sediment 12.0 +genus Streptococcus root:Environmental:Aquatic:Marine:Sediment 13.0 genus Streptococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +genus Streptococcus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Streptococcus root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Streptococcus root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Streptococcus root:Engineered:Biogas plant:Wet fermentation 3.0 +genus Streptococcus root:Engineered:Lab enrichment 1.0 genus Streptococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 genus Streptococcus root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Streptococcus root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 genus Streptococcus root:Host-associated:Birds:Digestive system:Ceca 2.0 +genus Streptococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Streptococcus root:Host-associated:Human:Digestive system 20.0 genus Streptococcus root:Environmental:Aquatic:Freshwater 1.0 genus Streptococcus root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 @@ -34390,7 +35233,6 @@ genus Streptococcus root:Engineered:Lab enrichment:Defined media 1.0 genus Streptococcus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Streptococcus root:Engineered:Food production 2.0 genus Streptococcus root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -genus Streptococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Streptococcus root:Host-associated:Mammals:Digestive system:Large intestine 7.0 genus Streptococcus root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 genus Streptococcus root:Engineered:Food production:Fermented seafood 1.0 @@ -34407,7 +35249,7 @@ genus Streptococcus root:Host-associated:Human:Digestive system:Oral:Supragingiv genus Streptococcus root:Host-associated:Fish:Digestive system:Foregut 2.0 genus Streptococcus root:Engineered:Bioreactor:Continuous culture 1.0 genus Streptococcus root:Host-associated:Human:Reproductive system:Female 2.0 -genus Streptococcus root:Engineered:Wastewater:Water and sludge 2.0 +genus Streptococcus root:Engineered:Wastewater:Water and sludge 3.0 genus Streptococcus root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 genus Streptococcus root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 genus Streptococcus root:Host-associated:Mammals:Gastrointestinal tract 4.0 @@ -34415,10 +35257,9 @@ genus Streptococcus root:Host-associated:Birds:Digestive system:Digestive tube 1 genus Streptococcus root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Streptococcus root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 genus Streptococcus root:Host-associated:Fish:Digestive system:Intestine 1.0 -genus Streptococcus root:Host-associated:Insecta 5.0 +genus Streptococcus root:Host-associated:Insecta 6.0 genus Streptococcus root:Engineered:Built environment 11.0 genus Streptococcus root:Host-associated:Birds:Digestive system 2.0 -genus Streptococcus root:Engineered:Lab enrichment 1.0 genus Streptococcus root:Host-associated:Animal:Digestive system:Fecal 3.0 genus Streptococcus root:Engineered:Biogas plant 2.0 genus Streptococcus root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 @@ -34427,7 +35268,6 @@ genus Streptococcus root:Host-associated:Mammals:Respiratory system 1.0 genus Streptococcus root:Host-associated:Birds 2.0 genus Streptococcus root:Host-associated:Animal 1.0 genus Streptococcus root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 -genus Streptococcus root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Streptococcus root:Host-associated:Human:Digestive system:Oral:Throat 1.0 genus Streptococcus root:Host-associated:Arthropoda 2.0 genus Streptococcus root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 @@ -34466,6 +35306,7 @@ genus Aeromonas root:Engineered:Wastewater:Industrial wastewater 1.0 genus Aeromonas root:Engineered:Modeled 1.0 genus Aeromonas root:Host-associated:Fish:Digestive system 1.0 genus Aeromonas root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Aeromonas root:Engineered:Wastewater:Water and sludge 1.0 genus Aeromonas root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 genus Aeromonas root:Host-associated:Birds 2.0 genus Aeromonas root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 @@ -34491,7 +35332,7 @@ phylum Basidiomycota root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Basidiomycota root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Basidiomycota root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 phylum Basidiomycota root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -phylum Basidiomycota root:Environmental:Aquatic:Marine 35.0 +phylum Basidiomycota root:Environmental:Aquatic:Marine 37.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Oceanic 5.0 phylum Basidiomycota root:Host-associated:Mammals:Digestive system 1.0 @@ -34500,28 +35341,31 @@ phylum Basidiomycota root:Environmental:Terrestrial:Soil:Forest soil 5.0 phylum Basidiomycota root:Host-associated:Human 3.0 phylum Basidiomycota root:Host-associated:Plants 21.0 phylum Basidiomycota root:Engineered:Bioreactor 14.0 +phylum Basidiomycota root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Basidiomycota root:Host-associated:Human:Skin 12.0 phylum Basidiomycota root:Mixed 3.0 phylum Basidiomycota root:Host-associated:Mammals 3.0 phylum Basidiomycota root:Engineered:Food production:Fermented beverages 5.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +phylum Basidiomycota root:Engineered:Food production:Dairy products 1.0 phylum Basidiomycota root:Host-associated:Plants:Phylloplane 1.0 phylum Basidiomycota root:Host-associated:Plants:Rhizosphere 3.0 -phylum Basidiomycota root:Environmental:Terrestrial:Soil 9.0 +phylum Basidiomycota root:Environmental:Terrestrial:Soil 10.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Sediment 7.0 phylum Basidiomycota root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 phylum Basidiomycota root:Environmental:Aquatic:Sediment 1.0 +phylum Basidiomycota root:Engineered:Lab enrichment 1.0 +phylum Basidiomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Basidiomycota root:Host-associated:Human:Digestive system 1.0 phylum Basidiomycota root:Environmental:Aquatic:Freshwater 2.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Coastal 6.0 phylum Basidiomycota root:Engineered:Solid waste:Composting 1.0 phylum Basidiomycota root:Host-associated:Algae:Red algae 1.0 phylum Basidiomycota root:Engineered:Lab enrichment:Defined media 1.0 -phylum Basidiomycota root:Host-associated:Plants:Root 2.0 +phylum Basidiomycota root:Host-associated:Plants:Root 3.0 phylum Basidiomycota root:Engineered:Food production 2.0 phylum Basidiomycota root:Environmental:Terrestrial:Deep subsurface 3.0 phylum Basidiomycota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -phylum Basidiomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Basidiomycota root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 phylum Basidiomycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Basidiomycota root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -34535,6 +35379,7 @@ phylum Basidiomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Basidiomycota root:Environmental:Aquatic:Freshwater:Ice 1.0 phylum Basidiomycota root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Basidiomycota root:Host-associated:Insecta 2.0 +phylum Basidiomycota root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Basidiomycota root:Host-associated:Plants:Phylloplane:Endophytes 1.0 phylum Basidiomycota root:Engineered:Built environment 5.0 phylum Basidiomycota root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -34543,8 +35388,10 @@ phylum Basidiomycota root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Basidiomycota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 phylum Basidiomycota root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 phylum Basidiomycota root:Environmental:Air 1.0 +phylum Basidiomycota root:Host-associated:Fungi 1.0 phylum Basidiomycota root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 phylum Basidiomycota root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +phylum Basidiomycota root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 phylum Basidiomycota root:Host-associated:Human:Circulatory system 2.0 phylum Basidiomycota root:Environmental:Terrestrial:Soil:Loam 1.0 class Microbotryomycetes root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -34558,6 +35405,7 @@ class Microbotryomycetes root:Host-associated:Mammals 1.0 class Microbotryomycetes root:Engineered:Food production:Fermented beverages 1.0 class Microbotryomycetes root:Environmental:Terrestrial:Soil 1.0 class Microbotryomycetes root:Environmental:Aquatic:Marine:Sediment 2.0 +class Microbotryomycetes root:Engineered:Lab enrichment 1.0 class Microbotryomycetes root:Host-associated:Human:Digestive system 1.0 class Microbotryomycetes root:Environmental:Aquatic:Marine:Coastal 1.0 class Microbotryomycetes root:Host-associated:Algae:Red algae 1.0 @@ -34567,6 +35415,7 @@ class Microbotryomycetes root:Host-associated:Fish:Digestive system:Intestine 1. class Microbotryomycetes root:Engineered:Built environment 2.0 class Microbotryomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Microbotryomycetes root:Environmental:Air 1.0 +class Microbotryomycetes root:Host-associated:Fungi 1.0 class Microbotryomycetes root:Host-associated:Human:Circulatory system 1.0 class Tremellomycetes root:Environmental:Aquatic:Freshwater:Sediment 1.0 class Tremellomycetes root:Host-associated:Mammals:Digestive system 1.0 @@ -34575,36 +35424,42 @@ class Tremellomycetes root:Host-associated:Plants 6.0 class Tremellomycetes root:Host-associated:Mammals 1.0 class Tremellomycetes root:Engineered:Food production:Fermented beverages 3.0 class Tremellomycetes root:Host-associated:Plants:Phylloplane 1.0 -class Tremellomycetes root:Environmental:Terrestrial:Soil 2.0 +class Tremellomycetes root:Environmental:Terrestrial:Soil 3.0 class Tremellomycetes root:Environmental:Aquatic:Marine:Sediment 2.0 +class Tremellomycetes root:Engineered:Lab enrichment 1.0 +class Tremellomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Tremellomycetes root:Host-associated:Human:Digestive system 1.0 class Tremellomycetes root:Engineered:Lab enrichment:Defined media 1.0 class Tremellomycetes root:Host-associated:Plants:Root 2.0 class Tremellomycetes root:Engineered:Food production 1.0 -class Tremellomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Tremellomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Tremellomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Tremellomycetes root:Engineered:Built environment 2.0 class Tremellomycetes root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Tremellomycetes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Tremellomycetes root:Environmental:Air 1.0 +class Tremellomycetes root:Host-associated:Fungi 1.0 order Malasseziales root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Malasseziales root:Environmental:Aquatic:Marine 4.0 order Malasseziales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Malasseziales root:Host-associated:Human:Skin 7.0 order Malasseziales root:Mixed 3.0 order Malasseziales root:Environmental:Aquatic:Marine:Sediment 4.0 +order Malasseziales root:Engineered:Lab enrichment 1.0 order Malasseziales root:Environmental:Aquatic:Freshwater 1.0 order Malasseziales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Malasseziales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Malasseziales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Balneolales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Balneolales root:Environmental:Aquatic:Marine 16.0 +order Balneolales root:Environmental:Aquatic:Marine 17.0 order Balneolales root:Environmental:Aquatic:Marine:Oceanic 2.0 order Balneolales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 order Balneolales root:Environmental:Aquatic:Estuary:Sediment 1.0 +order Balneolales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Balneolales root:Environmental:Aquatic:Marine:Sediment 1.0 order Balneolales root:Environmental:Aquatic:Sediment 1.0 +order Balneolales root:Host-associated:Mammals:Digestive system:Midgut 1.0 +order Balneolales root:Engineered:Lab enrichment 1.0 order Balneolales root:Environmental:Aquatic:Marine:Coastal 4.0 order Balneolales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Balneolales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -34612,7 +35467,6 @@ order Balneolales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 order Balneolales root:Environmental:Aquatic:Marine:Pelagic 1.0 order Balneolales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Balneolales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -order Balneolales root:Engineered:Lab enrichment 1.0 order Balneolales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 2.0 order Balneolales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 order Balneolales root:Engineered 1.0 @@ -34631,12 +35485,15 @@ family Malasseziaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Malasseziaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Malasseziaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 family Balneolaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Balneolaceae root:Environmental:Aquatic:Marine 23.0 +family Balneolaceae root:Environmental:Aquatic:Marine 24.0 family Balneolaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Balneolaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 family Balneolaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 +family Balneolaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Balneolaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Balneolaceae root:Environmental:Aquatic:Sediment 1.0 +family Balneolaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Balneolaceae root:Engineered:Lab enrichment 1.0 family Balneolaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Balneolaceae root:Environmental:Aquatic:Marine:Coastal 5.0 family Balneolaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -34644,7 +35501,6 @@ family Balneolaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 family Balneolaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Balneolaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Balneolaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Balneolaceae root:Engineered:Lab enrichment 1.0 family Balneolaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Balneolaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 3.0 family Balneolaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 3.0 @@ -34677,8 +35533,8 @@ genus Maritimimonas root:Environmental:Aquatic:Marine:Sediment 6.0 genus Maritimimonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Maritimimonas root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Maritimimonas root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -genus Maritimimonas root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Maritimimonas root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Maritimimonas root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Breviata root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Methylotenera root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Methylotenera root:Environmental:Aquatic:Marine 2.0 @@ -34750,37 +35606,42 @@ species Nitrospirae bacterium GWF2 44 13 root:Environmental:Aquatic:Freshwater:S species Nitrospirae bacterium GWF2 44 13 root:Environmental:Terrestrial:Soil 2.0 species Nitrospirae bacterium GWF2 44 13 root:Environmental:Aquatic:Marine:Sediment 1.0 species Nitrospirae bacterium GWF2 44 13 root:Engineered:Wastewater:Industrial wastewater 1.0 +species Nitrospirae bacterium GWF2 44 13 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Nitrospirae bacterium GWF2 44 13 root:Engineered:Industrial production 1.0 species Nitrospirae bacterium GWF2 44 13 root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species iron-reducing bacterium enrichment culture clone FeC 1 E6 root:Environmental:Aquatic:Freshwater:Sediment 1.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Fecal 17.0 -phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:Saliva 21.0 +phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Fecal 18.0 +phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 phylum Candidatus Saccharibacteria root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 -phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Marine 1.0 +phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Marine 2.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Marine:Oceanic 5.0 phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system 5.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Human 4.0 +phylum Candidatus Saccharibacteria root:Host-associated:Human 5.0 phylum Candidatus Saccharibacteria root:Host-associated:Plants 5.0 +phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Large intestine 1.0 phylum Candidatus Saccharibacteria root:Engineered:Bioreactor 7.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Candidatus Saccharibacteria root:Engineered:Wastewater:Activated Sludge 9.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Skin 2.0 phylum Candidatus Saccharibacteria root:Mixed 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Mammals 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Mammals 2.0 +phylum Candidatus Saccharibacteria root:Engineered:Food production:Fermented beverages 1.0 phylum Candidatus Saccharibacteria root:Engineered:Wastewater 11.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Reproductive system:Vagina 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral 43.0 +phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral 44.0 phylum Candidatus Saccharibacteria root:Environmental:Terrestrial:Soil:Contaminated 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Plants:Rhizosphere 7.0 +phylum Candidatus Saccharibacteria root:Host-associated:Plants:Rhizosphere 8.0 phylum Candidatus Saccharibacteria root:Environmental:Terrestrial:Soil 1.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Sediment 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 +phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Birds:Digestive system:Ceca 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system 6.0 phylum Candidatus Saccharibacteria root:Engineered:Solid waste:Composting 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 4.0 @@ -34788,19 +35649,21 @@ phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 13.0 phylum Candidatus Saccharibacteria root:Host-associated:Algae:Red algae 2.0 phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Arthropoda:Digestive system:Gut 2.0 phylum Candidatus Saccharibacteria root:Host-associated:Plants:Root 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Plants:Rhizosphere:Soil 1.0 -phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Digestive system:Large intestine 3.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Animal:Digestive system 3.0 phylum Candidatus Saccharibacteria root:Engineered:Wastewater:Industrial wastewater 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Insecta:Digestive system 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 -phylum Candidatus Saccharibacteria root:Engineered:Wastewater:Water and sludge 4.0 +phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +phylum Candidatus Saccharibacteria root:Engineered:Wastewater:Water and sludge 6.0 phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Gastrointestinal tract 1.0 phylum Candidatus Saccharibacteria root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 -phylum Candidatus Saccharibacteria root:Engineered:Built environment 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Insecta 1.0 +phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +phylum Candidatus Saccharibacteria root:Engineered:Built environment 2.0 phylum Candidatus Saccharibacteria root:Host-associated:Birds:Digestive system 1.0 phylum Candidatus Saccharibacteria root:Engineered:Food production:Fermented vegetables 1.0 phylum Candidatus Saccharibacteria root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -34808,6 +35671,7 @@ phylum Candidatus Saccharibacteria root:Host-associated:Mammals:Respiratory syst phylum Candidatus Saccharibacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system 1.0 +phylum Candidatus Saccharibacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Circulatory system 1.0 phylum Candidatus Saccharibacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 @@ -34833,10 +35697,10 @@ genus Desulfomicrobium root:Engineered:Wastewater:Activated Sludge 2.0 genus Desulfomicrobium root:Engineered:Wastewater 1.0 genus Desulfomicrobium root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Desulfomicrobium root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Desulfomicrobium root:Engineered:Lab enrichment 1.0 genus Desulfomicrobium root:Engineered:Wastewater:Industrial wastewater 1.0 genus Desulfomicrobium root:Engineered:Bioreactor:Continuous culture 1.0 genus Desulfomicrobium root:Engineered:Wastewater:Water and sludge 1.0 -genus Desulfomicrobium root:Engineered:Lab enrichment 1.0 genus Desulfomicrobium root:Engineered:Biogas plant 1.0 genus Massilibacillus root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Macellibacteroides root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -34890,10 +35754,11 @@ genus Trichococcus root:Environmental:Terrestrial:Soil 1.0 genus Trichococcus root:Engineered:Lab enrichment:Defined media 1.0 genus Trichococcus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Trichococcus root:Engineered:Bioreactor:Continuous culture 1.0 -genus Trichococcus root:Engineered:Wastewater:Water and sludge 2.0 +genus Trichococcus root:Engineered:Wastewater:Water and sludge 3.0 genus Trichococcus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Trichococcus root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 genus Trichococcus root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 +genus Trichococcus root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Thauera root:Environmental:Aquatic:Freshwater:Sediment 2.0 genus Thauera root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 genus Thauera root:Engineered:Bioreactor 8.0 @@ -34908,8 +35773,8 @@ genus Thauera root:Environmental:Terrestrial:Soil:Clay 2.0 genus Thauera root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Thauera root:Engineered:Wastewater:Water and sludge 1.0 genus Collinsella root:Environmental:Aquatic:Freshwater:Sediment 1.0 -genus Collinsella root:Host-associated:Mammals:Digestive system:Fecal 1.0 -genus Collinsella root:Host-associated:Human:Digestive system:Large intestine:Fecal 52.0 +genus Collinsella root:Host-associated:Mammals:Digestive system:Fecal 2.0 +genus Collinsella root:Host-associated:Human:Digestive system:Large intestine:Fecal 53.0 genus Collinsella root:Host-associated:Mammals:Digestive system 2.0 genus Collinsella root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Collinsella root:Engineered:Bioreactor 4.0 @@ -34920,7 +35785,7 @@ genus Collinsella root:Environmental:Terrestrial:Soil 1.0 genus Collinsella root:Environmental:Aquatic:Sediment 1.0 genus Collinsella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Collinsella root:Host-associated:Human:Digestive system 8.0 -genus Collinsella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 +genus Collinsella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 genus Collinsella root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Collinsella root:Host-associated:Animal:Digestive system 1.0 genus Collinsella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -34966,18 +35831,20 @@ species Deltaproteobacteria bacterium ADurb.Bin135 root:Environmental:Aquatic:Fr species Deltaproteobacteria bacterium ADurb.Bin135 root:Engineered:Wastewater:Activated Sludge 2.0 species Deltaproteobacteria bacterium ADurb.Bin135 root:Engineered:Wastewater 1.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine 5.0 +phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine 6.0 phylum Candidatus Parcubacteria root:Engineered:Wastewater:Activated Sludge 1.0 phylum Candidatus Parcubacteria root:Engineered:Wastewater 3.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Sediment 2.0 +phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Sediment 3.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 +phylum Candidatus Parcubacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Pelagic 1.0 phylum Candidatus Parcubacteria root:Engineered:Wastewater:Water and sludge 2.0 phylum Candidatus Parcubacteria root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 family Ilumatobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 family Ilumatobacteraceae root:Environmental:Aquatic:Marine 2.0 +family Ilumatobacteraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Ilumatobacteraceae root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Fusibacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Fusibacter root:Environmental:Aquatic:Marine 3.0 @@ -34991,6 +35858,7 @@ genus Fusibacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Fusibacter root:Environmental:Aquatic:Marine:Sediment 10.0 genus Fusibacter root:Environmental:Aquatic:Sediment 3.0 genus Fusibacter root:Host-associated:Porifera 1.0 +genus Fusibacter root:Engineered:Lab enrichment 1.0 genus Fusibacter root:Host-associated:Human:Digestive system 1.0 genus Fusibacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Fusibacter root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -34998,7 +35866,6 @@ genus Fusibacter root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Fusibacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Fusibacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Fusibacter root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Fusibacter root:Engineered:Lab enrichment 1.0 genus Fusibacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Fusibacter root:Environmental:Terrestrial:Oil reservoir 1.0 genus Fusibacter root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -35008,6 +35875,7 @@ genus Haliscomenobacter root:Engineered:Wastewater:Activated Sludge 4.0 genus Haliscomenobacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Haliscomenobacter root:Host-associated:Arthropoda 1.0 genus Hyaloperonospora root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Hyaloperonospora root:Environmental:Terrestrial:Soil 1.0 genus Hyaloperonospora root:Environmental:Terrestrial:Soil:Loam 1.0 species Parcubacteria bacterium OLB19 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Parcubacteria bacterium OLB19 root:Engineered:Wastewater 2.0 @@ -35015,6 +35883,7 @@ species Mariniradius saccharolyticus root:Environmental:Aquatic:Freshwater:Sedim species Mariniradius saccharolyticus root:Environmental:Terrestrial:Soil 1.0 species Hyaloperonospora arabidopsidis root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Hyaloperonospora arabidopsidis root:Host-associated:Plants:Rhizosphere 1.0 +species Hyaloperonospora arabidopsidis root:Environmental:Terrestrial:Soil 1.0 species Hyaloperonospora arabidopsidis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Hyaloperonospora arabidopsidis root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 species Hyaloperonospora arabidopsidis root:Environmental:Terrestrial:Soil:Loam 1.0 @@ -35028,13 +35897,16 @@ species Haliscomenobacter hydrossis root:Environmental:Aquatic:Freshwater:Ground species Aeromonas hydrophila root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Aeromonas hydrophila root:Engineered:Bioreactor 2.0 species Aeromonas hydrophila root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Aeromonas hydrophila root:Mixed 1.0 species Aeromonas hydrophila root:Engineered:Wastewater 1.0 species Aeromonas hydrophila root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Aeromonas hydrophila root:Host-associated:Birds 1.0 species Oligoflexus tunisiensis root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Oligoflexus tunisiensis root:Mixed 1.0 +species Oligoflexus tunisiensis root:Host-associated:Plants:Rhizosphere 1.0 species Oligoflexus tunisiensis root:Environmental:Terrestrial:Soil 1.0 species Oligoflexus tunisiensis root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 +species Oligoflexus tunisiensis root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Gemmatimonadetes bacterium SCN 70-22 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Gemmatimonadetes bacterium SCN 70-22 root:Engineered:Wastewater:Activated Sludge 1.0 genus Tetradesmus root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -35071,16 +35943,16 @@ family Solibacteraceae root:Environmental:Terrestrial:Soil:Permafrost 6.0 family Solibacteraceae root:Mixed 2.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Solibacteraceae root:Host-associated:Plants:Rhizosphere 5.0 -family Solibacteraceae root:Environmental:Terrestrial:Soil 41.0 +family Solibacteraceae root:Environmental:Terrestrial:Soil 43.0 family Solibacteraceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Solibacteraceae root:Environmental:Aquatic:Sediment 1.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 9.0 family Solibacteraceae root:Host-associated:Porifera 1.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Grasslands 7.0 +family Solibacteraceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Solibacteraceae root:Environmental:Aquatic:Freshwater 2.0 family Solibacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 -family Solibacteraceae root:Host-associated:Plants:Rhizosphere:Soil 5.0 family Solibacteraceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Clay 1.0 family Solibacteraceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -35114,21 +35986,22 @@ genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Permafrost 4.0 genus Candidatus Solibacter root:Mixed 3.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Candidatus Solibacter root:Host-associated:Plants:Rhizosphere 7.0 -genus Candidatus Solibacter root:Environmental:Terrestrial:Soil 22.0 +genus Candidatus Solibacter root:Environmental:Terrestrial:Soil 23.0 genus Candidatus Solibacter root:Environmental:Aquatic:Marine:Sediment 2.0 genus Candidatus Solibacter root:Environmental:Aquatic:Sediment 2.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Grasslands 2.0 +genus Candidatus Solibacter root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater 1.0 genus Candidatus Solibacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -genus Candidatus Solibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Mine 1.0 genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Crop 1.0 genus Candidatus Solibacter root:Host-associated:Insecta 1.0 genus Candidatus Solibacter root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Candidatus Solibacter root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Candidatus Solibacter root:Environmental:Terrestrial:Volcanic 1.0 @@ -35138,15 +36011,16 @@ genus Aciditerrimonas root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Aciditerrimonas root:Environmental:Terrestrial:Soil 1.0 genus Aciditerrimonas root:Engineered:Solid waste:Composting 1.0 genus Ktedonobacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 -genus Ktedonobacter root:Environmental:Terrestrial:Soil 2.0 +genus Ktedonobacter root:Environmental:Terrestrial:Soil 3.0 species Candidatus Solibacter usitatus root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil:Agricultural 2.0 species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil:Permafrost 3.0 species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Candidatus Solibacter usitatus root:Host-associated:Plants:Rhizosphere 6.0 -species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil 5.0 +species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil 6.0 species Candidatus Solibacter usitatus root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Candidatus Solibacter usitatus root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Candidatus Solibacter usitatus root:Engineered:Solid waste:Composting 1.0 species Candidatus Solibacter usitatus root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Acidobacteriaceae bacterium KBS 96 root:Environmental:Aquatic:Freshwater:Sediment 1.0 @@ -35155,6 +36029,7 @@ species Acidobacteriaceae bacterium KBS 96 root:Environmental:Terrestrial:Soil:P species Acidobacteriaceae bacterium KBS 96 root:Host-associated:Plants:Rhizosphere 1.0 species Acidobacteriaceae bacterium KBS 96 root:Environmental:Terrestrial:Soil 3.0 species Acidobacteriaceae bacterium KBS 96 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Acidobacteriaceae bacterium KBS 96 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Acidobacteriaceae bacterium KBS 96 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Candidatus Koribacter versatilis root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Candidatus Koribacter versatilis root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -35169,14 +36044,14 @@ species Aciditerrimonas ferrireducens root:Environmental:Terrestrial:Soil:Permaf species Aciditerrimonas ferrireducens root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Aciditerrimonas ferrireducens root:Engineered:Solid waste:Composting 1.0 phylum Nitrospinae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -phylum Nitrospinae root:Environmental:Aquatic:Marine 90.0 +phylum Nitrospinae root:Environmental:Aquatic:Marine 91.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Oceanic 20.0 phylum Nitrospinae root:Environmental:Aquatic:Lentic:Brackish 2.0 phylum Nitrospinae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Nitrospinae root:Mixed 2.0 phylum Nitrospinae root:Host-associated:Mammals 1.0 -phylum Nitrospinae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 +phylum Nitrospinae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Sediment 17.0 phylum Nitrospinae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -35194,8 +36069,9 @@ phylum Nitrospinae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 4.0 phylum Nitrospinae root:Environmental:Aquatic:Estuary 1.0 phylum Nitrospinae root:Host-associated:Fish:Digestive system:Foregut 1.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -phylum Nitrospinae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 +phylum Nitrospinae root:Environmental:Aquatic:Marine:Marginal Sea 4.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Pelagic 2.0 +phylum Nitrospinae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 phylum Nitrospinae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 phylum Nitrospinae root:Engineered:Industrial production 1.0 phylum Nitrospinae root:Host-associated:Fish:Skin 1.0 @@ -35203,7 +36079,7 @@ phylum Nitrospinae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 phylum Nitrospinae root:Host-associated:Cnidaria 1.0 phylum Nitrospinae root:Host-associated:Algae:Brown Algae 1.0 family Thermoanaerobacterales Family III. Incertae Sedis root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Thermoanaerobacterales Family III. Incertae Sedis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Thermoanaerobacterales Family III. Incertae Sedis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Thermoanaerobacterales Family III. Incertae Sedis root:Engineered:Bioreactor 3.0 family Thermoanaerobacterales Family III. Incertae Sedis root:Engineered:Food production:Fermented beverages 1.0 family Thermoanaerobacterales Family III. Incertae Sedis root:Environmental:Aquatic:Thermal springs 2.0 @@ -35238,27 +36114,15 @@ species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Fr species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Sediment 1.0 +species Deltaproteobacteria bacterium RBG 13 43 22 root:Engineered:Lab enrichment 1.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Marine:Coastal 1.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -species Deltaproteobacteria bacterium RBG 13 43 22 root:Engineered:Lab enrichment 1.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 +species Deltaproteobacteria bacterium RBG 13 43 22 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species anaerobic bacterium MO-CFX2 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species anaerobic bacterium MO-CFX2 root:Environmental:Terrestrial:Soil 1.0 species thermophilic bacterium JA2 root:Environmental:Aquatic:Freshwater:Sediment 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Sediment 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 -species Spirochaetes bacterium RBG 16 49 21 root:Mixed 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Sediment 2.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Sediment 2.0 -species Spirochaetes bacterium RBG 16 49 21 root:Engineered:Wastewater:Water and sludge 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -species Spirochaetes bacterium RBG 16 49 21 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species bacterium enrichment culture clone LCB B2C39 root:Environmental:Aquatic:Freshwater:Sediment 2.0 species bacterium enrichment culture clone LCB B2C39 root:Environmental:Aquatic:Estuary:Sediment 1.0 species bacterium enrichment culture clone LCB B2C39 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -35277,6 +36141,7 @@ species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic:Marine 1.0 species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 6.0 species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Mixed 1.0 +species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Host-associated:Plants:Rhizosphere 1.0 species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Terrestrial:Soil 3.0 species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic:Sediment 4.0 @@ -35289,6 +36154,7 @@ species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic species Actinobacteria bacterium RBG 19FT COMBO 70 19 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Fervidicella metallireducens root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Planktothricoides root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Planktothricoides root:Environmental:Aquatic:Freshwater 1.0 genus Mesotoga root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Mesotoga root:Environmental:Aquatic:Marine 1.0 genus Mesotoga root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -35326,6 +36192,7 @@ order Nevskiales root:Engineered:Bioreactor 2.0 order Nevskiales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Nevskiales root:Engineered:Wastewater:Activated Sludge 1.0 order Nevskiales root:Host-associated:Amphibia 1.0 +order Nevskiales root:Host-associated:Plants:Rhizosphere 1.0 order Nevskiales root:Environmental:Terrestrial:Soil 3.0 order Nevskiales root:Environmental:Aquatic:Marine:Sediment 1.0 order Nevskiales root:Environmental:Aquatic 3.0 @@ -35338,6 +36205,7 @@ order Nevskiales root:Engineered:Wastewater:Industrial wastewater 2.0 order Nevskiales root:Host-associated:Insecta:Digestive system 1.0 order Nevskiales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Nevskiales root:Environmental 1.0 +order Nevskiales root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Methanoregula root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Methanoregula root:Environmental:Aquatic:Marine 2.0 genus Methanoregula root:Environmental:Aquatic:Estuary:Sediment 3.0 @@ -35366,6 +36234,151 @@ species delta proteobacterium JGI 0002000-E07 root:Environmental:Aquatic:Freshwa species delta proteobacterium JGI 0002000-E07 root:Environmental:Terrestrial:Soil:Forest soil 1.0 species delta proteobacterium JGI 0002000-E07 root:Host-associated:Plants:Rhizosphere 1.0 species delta proteobacterium JGI 0002000-E07 root:Environmental:Terrestrial:Soil 3.0 +class Hydrogenophilalia root:Environmental:Aquatic:Freshwater:Sediment 1.0 +class Hydrogenophilalia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +class Hydrogenophilalia root:Environmental:Terrestrial:Geologic 1.0 +class Hydrogenophilalia root:Engineered:Bioreactor 13.0 +class Hydrogenophilalia root:Engineered:Wastewater 1.0 +class Hydrogenophilalia root:Environmental:Aquatic:Sediment 2.0 +class Hydrogenophilalia root:Engineered:Biogas plant:Wet fermentation 2.0 +class Hydrogenophilalia root:Environmental:Aquatic:Thermal springs 1.0 +class Hydrogenophilalia root:Engineered:Solid waste:Composting 2.0 +class Hydrogenophilalia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 +class Hydrogenophilalia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +class Hydrogenophilalia root:Engineered:Food production:Fermented vegetables 1.0 +class Hydrogenophilalia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +class Hydrogenophilalia root:Environmental:Terrestrial:Oil reservoir 1.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Sediment 1.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system:Fecal 20.0 +order Enterobacterales root:Host-associated:Birds:Digestive system:Fecal 3.0 +order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 89.0 +order Enterobacterales root:Environmental:Aquatic:Marine 16.0 +order Enterobacterales root:Host-associated:Fish 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic 2.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system 17.0 +order Enterobacterales root:Environmental:Aquatic:Lentic:Brackish 4.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +order Enterobacterales root:Host-associated:Human 3.0 +order Enterobacterales root:Host-associated:Plants 10.0 +order Enterobacterales root:Environmental:Aquatic:Estuary:Sediment 1.0 +order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine 5.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Agricultural 1.0 +order Enterobacterales root:Engineered:Bioreactor 6.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 +order Enterobacterales root:Engineered:Wastewater:Activated Sludge 2.0 +order Enterobacterales root:Host-associated:Human:Skin 3.0 +order Enterobacterales root:Mixed 8.0 +order Enterobacterales root:Host-associated:Mammals 6.0 +order Enterobacterales root:Host-associated:Amphibia 2.0 +order Enterobacterales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Enterobacterales root:Engineered:Food production:Fermented beverages 5.0 +order Enterobacterales root:Engineered:Wastewater 2.0 +order Enterobacterales root:Host-associated:Human:Reproductive system:Vagina 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +order Enterobacterales root:Host-associated:Human:Digestive system:Oral 2.0 +order Enterobacterales root:Engineered:Food production:Dairy products 6.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Contaminated 1.0 +order Enterobacterales root:Host-associated:Plants:Phylloplane 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +order Enterobacterales root:Environmental:Terrestrial:Soil 6.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Sediment 11.0 +order Enterobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 5.0 +order Enterobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Lotic 1.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system:Midgut 2.0 +order Enterobacterales root:Host-associated:Porifera 1.0 +order Enterobacterales root:Engineered:Lab enrichment 1.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Wetlands 1.0 +order Enterobacterales root:Engineered:Lab Synthesis 1.0 +order Enterobacterales root:Host-associated:Birds:Digestive system:Ceca 5.0 +order Enterobacterales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Enterobacterales root:Host-associated:Human:Digestive system 21.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Coastal 5.0 +order Enterobacterales root:Engineered:Solid waste:Composting 3.0 +order Enterobacterales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +order Enterobacterales root:Host-associated:Arthropoda:Digestive system:Gut 2.0 +order Enterobacterales root:Engineered:Lab enrichment:Defined media 3.0 +order Enterobacterales root:Host-associated:Plants:Root 2.0 +order Enterobacterales root:Engineered:Food production 4.0 +order Enterobacterales root:Environmental:Terrestrial:Deep subsurface 1.0 +order Enterobacterales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +order Enterobacterales root:Host-associated:Mammals:Digestive system:Large intestine 8.0 +order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Lentic 2.0 +order Enterobacterales root:Host-associated:Human:Skin:Naris 1.0 +order Enterobacterales root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 +order Enterobacterales root:Host-associated:Animal:Digestive system 3.0 +order Enterobacterales root:Host-associated:Insecta:Digestive system 5.0 +order Enterobacterales root:Host-associated:Fish:Digestive system 2.0 +order Enterobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 +order Enterobacterales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Clay 1.0 +order Enterobacterales root:Host-associated:Human:Reproductive system:Female 1.0 +order Enterobacterales root:Engineered:Wastewater:Water and sludge 2.0 +order Enterobacterales root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 +order Enterobacterales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 +order Enterobacterales root:Environmental:Terrestrial 1.0 +order Enterobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 +order Enterobacterales root:Host-associated:Mammals:Gastrointestinal tract 3.0 +order Enterobacterales root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Enterobacterales root:Host-associated:Insecta 7.0 +order Enterobacterales root:Engineered:Built environment 9.0 +order Enterobacterales root:Host-associated:Birds:Digestive system 6.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +order Enterobacterales root:Host-associated:Animal:Digestive system:Fecal 2.0 +order Enterobacterales root:Engineered:Food production:Fermented vegetables 4.0 +order Enterobacterales root:Host-associated:Reptile 1.0 +order Enterobacterales root:Host-associated:Mammals:Respiratory system 2.0 +order Enterobacterales root:Host-associated:Birds 5.0 +order Enterobacterales root:Engineered 2.0 +order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 +order Enterobacterales root:Host-associated:Human:Respiratory system 1.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +order Enterobacterales root:Host-associated:Mammals:Skin 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +order Enterobacterales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +order Enterobacterales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 +order Enterobacterales root:Host-associated:Mollusca:Digestive system 1.0 +order Enterobacterales root:Host-associated:Human:Circulatory system:Blood 1.0 +order Enterobacterales root:Host-associated:Human:Circulatory system 2.0 +order Enterobacterales root:Host-associated:Cnidaria 1.0 +order Enterobacterales root:Environmental:Terrestrial:Soil:Loam 1.0 +order Enterobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 +order Enterobacterales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 +order Enterobacterales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 +genus Escherichia root:Environmental:Aquatic:Freshwater:Sediment 1.0 +genus Escherichia root:Host-associated:Mammals:Digestive system:Fecal 3.0 +genus Escherichia root:Host-associated:Birds:Digestive system:Fecal 1.0 +genus Escherichia root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +genus Escherichia root:Environmental:Aquatic:Marine 4.0 +genus Escherichia root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Escherichia root:Host-associated:Mammals:Digestive system 1.0 +genus Escherichia root:Environmental:Aquatic:Lentic:Brackish 2.0 +genus Escherichia root:Host-associated:Human 1.0 +genus Escherichia root:Engineered:Wastewater:Activated Sludge 1.0 +genus Escherichia root:Host-associated:Mammals 1.0 +genus Escherichia root:Engineered:Food production:Dairy products 1.0 +genus Escherichia root:Environmental:Terrestrial:Soil 1.0 +genus Escherichia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Escherichia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Escherichia root:Host-associated:Birds:Digestive system:Ceca 1.0 +genus Escherichia root:Host-associated:Human:Digestive system 1.0 +genus Escherichia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +genus Escherichia root:Engineered:Food production 1.0 +genus Escherichia root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +genus Escherichia root:Environmental:Terrestrial 1.0 +genus Escherichia root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 +genus Escherichia root:Host-associated:Birds 1.0 +species Nocardioides sp. JS614 root:Environmental:Aquatic:Freshwater:Sediment 1.0 +species Nocardioides sp. JS614 root:Environmental:Aquatic:Marine 8.0 family Acidiferrobacteraceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 family Acidiferrobacteraceae root:Engineered:Bioreactor 1.0 family Acidiferrobacteraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -35373,6 +36386,7 @@ family Acidiferrobacteraceae root:Environmental:Terrestrial:Soil 1.0 family Acidiferrobacteraceae root:Engineered:Solid waste:Composting 1.0 family Acidiferrobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Acidiferrobacteraceae root:Engineered:Wastewater:Industrial wastewater 1.0 +family Acidiferrobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Acidiferrobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Acidiferrobacteraceae root:Engineered:Industrial production 1.0 family Acidiferrobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 @@ -35398,7 +36412,7 @@ genus Haliangium root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1. genus Haliangium root:Host-associated:Plants 2.0 genus Haliangium root:Environmental:Terrestrial:Soil:Agricultural 8.0 genus Haliangium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 5.0 -genus Haliangium root:Engineered:Wastewater:Activated Sludge 1.0 +genus Haliangium root:Engineered:Wastewater:Activated Sludge 2.0 genus Haliangium root:Environmental:Terrestrial:Soil:Permafrost 2.0 genus Haliangium root:Mixed 3.0 genus Haliangium root:Engineered:Wastewater 2.0 @@ -35410,11 +36424,11 @@ genus Haliangium root:Environmental:Aquatic:Marine:Sediment 16.0 genus Haliangium root:Environmental:Aquatic:Sediment 2.0 genus Haliangium root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 genus Haliangium root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Haliangium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Haliangium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Haliangium root:Environmental:Aquatic:Marine:Coastal 1.0 genus Haliangium root:Environmental:Aquatic:Marine:Cold seeps 2.0 genus Haliangium root:Host-associated:Plants:Root 2.0 -genus Haliangium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Haliangium root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Haliangium root:Environmental:Terrestrial:Soil:Mine 1.0 genus Haliangium root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 @@ -35482,8 +36496,8 @@ class [Pedosphaerae] root:Environmental:Aquatic:Freshwater:Wetlands 1.0 class [Pedosphaerae] root:Environmental:Terrestrial:Soil 14.0 class [Pedosphaerae] root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class [Pedosphaerae] root:Environmental:Terrestrial:Soil:Wetlands 2.0 -class [Pedosphaerae] root:Environmental:Aquatic:Freshwater 1.0 class [Pedosphaerae] root:Host-associated:Plants:Rhizosphere:Soil 3.0 +class [Pedosphaerae] root:Environmental:Aquatic:Freshwater 1.0 class [Pedosphaerae] root:Environmental:Aquatic:Estuary 1.0 class [Pedosphaerae] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class [Pedosphaerae] root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -35504,8 +36518,8 @@ class iii1-8 root:Environmental:Terrestrial:Soil:Permafrost 1.0 class iii1-8 root:Environmental:Terrestrial:Soil 7.0 class iii1-8 root:Environmental:Terrestrial:Soil:Wetlands 2.0 class iii1-8 root:Environmental:Terrestrial:Soil:Grasslands 1.0 -class iii1-8 root:Environmental:Terrestrial:Soil:Desert 1.0 class iii1-8 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +class iii1-8 root:Environmental:Terrestrial:Soil:Desert 1.0 class iii1-8 root:Engineered:Wastewater:Water and sludge 1.0 class iii1-8 root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class iii1-8 root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 @@ -35522,8 +36536,8 @@ order [Pedosphaerales] root:Environmental:Terrestrial:Soil 15.0 order [Pedosphaerales] root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order [Pedosphaerales] root:Environmental:Terrestrial:Soil:Wetlands 2.0 order [Pedosphaerales] root:Environmental:Terrestrial:Soil:Grasslands 1.0 -order [Pedosphaerales] root:Environmental:Aquatic:Freshwater 1.0 order [Pedosphaerales] root:Host-associated:Plants:Rhizosphere:Soil 3.0 +order [Pedosphaerales] root:Environmental:Aquatic:Freshwater 1.0 order [Pedosphaerales] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order [Pedosphaerales] root:Engineered:Wastewater:Industrial wastewater 1.0 order [Pedosphaerales] root:Host-associated 1.0 @@ -35543,13 +36557,13 @@ family [Weeksellaceae] root:Host-associated:Plants:Phylloplane 3.0 family [Weeksellaceae] root:Host-associated:Plants:Rhizosphere 1.0 family [Weeksellaceae] root:Environmental:Terrestrial:Soil 5.0 family [Weeksellaceae] root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +family [Weeksellaceae] root:Engineered:Lab enrichment 2.0 family [Weeksellaceae] root:Environmental:Terrestrial:Soil:Wetlands 1.0 family [Weeksellaceae] root:Engineered:Solid waste:Composting 3.0 family [Weeksellaceae] root:Engineered:Wastewater:Industrial wastewater 2.0 family [Weeksellaceae] root:Host-associated:Insecta:Digestive system 1.0 family [Weeksellaceae] root:Engineered:Wastewater:Water and sludge 2.0 family [Weeksellaceae] root:Host-associated:Insecta 2.0 -family [Weeksellaceae] root:Engineered:Lab enrichment 2.0 family [Weeksellaceae] root:Engineered:Food production:Fermented vegetables 1.0 family [Weeksellaceae] root:Engineered 1.0 family [Weeksellaceae] root:Engineered:Biotransformation 1.0 @@ -35569,8 +36583,8 @@ family Geodermatophilaceae root:Environmental:Terrestrial:Soil 8.0 family Geodermatophilaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Geodermatophilaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Geodermatophilaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Geodermatophilaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Geodermatophilaceae root:Environmental:Terrestrial:Soil:Desert 4.0 -family Geodermatophilaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Geodermatophilaceae root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 genus Procabacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Procabacter root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -35600,8 +36614,8 @@ species Bryobacter versatilis root:Host-associated:Plants:Rhizosphere 5.0 species Bryobacter versatilis root:Environmental:Terrestrial:Soil 22.0 species Bryobacter versatilis root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Bryobacter versatilis root:Environmental:Terrestrial:Soil:Grasslands 2.0 -species Bryobacter versatilis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Bryobacter versatilis root:Host-associated:Plants:Rhizosphere:Soil 3.0 +species Bryobacter versatilis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Bryobacter versatilis root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Bryobacter versatilis root:Host-associated 1.0 species Bryobacter versatilis root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -35619,8 +36633,8 @@ species Pseudomonas armeniacus root:Environmental:Aquatic:Marine:Coastal:Sedimen species Pseudomonas armeniacus root:Environmental:Terrestrial:Soil 7.0 species Pseudomonas armeniacus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Pseudomonas armeniacus root:Environmental:Aquatic 3.0 -species Pseudomonas armeniacus root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas armeniacus root:Host-associated:Plants:Rhizosphere:Soil 3.0 +species Pseudomonas armeniacus root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas armeniacus root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 species Pseudomonas armeniacus root:Engineered:Wastewater:Industrial wastewater 1.0 species Pseudomonas armeniacus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -35669,9 +36683,9 @@ family Koribacteraceae root:Engineered:Modeled:Simulated communities (microbial family Koribacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 6.0 family Koribacteraceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 family Koribacteraceae root:Environmental:Terrestrial:Soil:Grasslands 3.0 +family Koribacteraceae root:Host-associated:Plants:Rhizosphere:Soil 8.0 family Koribacteraceae root:Host-associated:Plants:Root 1.0 family Koribacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Koribacteraceae root:Host-associated:Plants:Rhizosphere:Soil 8.0 family Koribacteraceae root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 family Koribacteraceae root:Environmental:Terrestrial:Soil:Clay 1.0 family Koribacteraceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 @@ -35702,45 +36716,48 @@ family Ellin515 root:Environmental:Terrestrial:Soil 6.0 family Ellin515 root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Ellin515 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family Rikenellaceae root:Environmental:Aquatic:Freshwater:Sediment 2.0 -family Rikenellaceae root:Host-associated:Mammals:Digestive system:Fecal 50.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system:Fecal 51.0 family Rikenellaceae root:Host-associated:Birds:Digestive system:Fecal 8.0 family Rikenellaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 -family Rikenellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 110.0 +family Rikenellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 118.0 family Rikenellaceae root:Environmental:Aquatic:Marine 5.0 -family Rikenellaceae root:Host-associated:Mammals:Digestive system 26.0 -family Rikenellaceae root:Host-associated:Human:Digestive system:Large intestine 9.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system 28.0 +family Rikenellaceae root:Host-associated:Human:Digestive system:Large intestine 10.0 family Rikenellaceae root:Engineered:Bioreactor 9.0 family Rikenellaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Rikenellaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Rikenellaceae root:Host-associated:Human:Skin 1.0 -family Rikenellaceae root:Mixed 2.0 -family Rikenellaceae root:Host-associated:Mammals 6.0 +family Rikenellaceae root:Mixed 3.0 +family Rikenellaceae root:Host-associated:Mammals 7.0 family Rikenellaceae root:Host-associated:Human:Digestive system:Intestine 2.0 family Rikenellaceae root:Engineered:Wastewater 3.0 family Rikenellaceae root:Host-associated:Plants:Phylloplane 1.0 family Rikenellaceae root:Host-associated:Plants:Rhizosphere 1.0 family Rikenellaceae root:Environmental:Terrestrial:Soil 1.0 family Rikenellaceae root:Environmental:Aquatic:Marine:Sediment 4.0 +family Rikenellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Rikenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 family Rikenellaceae root:Environmental:Aquatic:Sediment 1.0 family Rikenellaceae root:Environmental:Aquatic 1.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system:Midgut 6.0 family Rikenellaceae root:Engineered:Biogas plant:Wet fermentation 1.0 -family Rikenellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 family Rikenellaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Rikenellaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 family Rikenellaceae root:Host-associated:Birds:Digestive system:Ceca 7.0 family Rikenellaceae root:Host-associated:Human:Digestive system 19.0 family Rikenellaceae root:Engineered:Solid waste:Composting 1.0 family Rikenellaceae root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -family Rikenellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 28.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 29.0 family Rikenellaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Rikenellaceae root:Engineered:Lab enrichment:Defined media 1.0 family Rikenellaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Rikenellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 family Rikenellaceae root:Host-associated:Mammals:Digestive system:Large intestine 9.0 +family Rikenellaceae root:Engineered:Food production:Fermented seafood 1.0 family Rikenellaceae root:Host-associated:Animal:Digestive system 3.0 family Rikenellaceae root:Host-associated:Insecta:Digestive system 1.0 family Rikenellaceae root:Host-associated 1.0 -family Rikenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Rikenellaceae root:Host-associated:Fish:Digestive system 2.0 family Rikenellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 family Rikenellaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 @@ -35749,6 +36766,7 @@ family Rikenellaceae root:Engineered:Wastewater:Water and sludge 2.0 family Rikenellaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 family Rikenellaceae root:Environmental:Terrestrial 1.0 family Rikenellaceae root:Host-associated:Mammals:Gastrointestinal tract 5.0 +family Rikenellaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Rikenellaceae root:Engineered:Built environment 1.0 family Rikenellaceae root:Host-associated:Birds:Digestive system 2.0 family Rikenellaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 @@ -35757,10 +36775,11 @@ family Rikenellaceae root:Host-associated:Reptile 1.0 family Rikenellaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Rikenellaceae root:Host-associated:Mammals:Respiratory system 4.0 family Rikenellaceae root:Host-associated:Birds 4.0 -family Rikenellaceae root:Host-associated:Mammals:Digestive system:Midgut 3.0 family Rikenellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 +family Rikenellaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Rikenellaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Rikenellaceae root:Host-associated:Human:Circulatory system 1.0 +family Rikenellaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Flavisolibacter root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Flavisolibacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Flavisolibacter root:Host-associated:Plants 1.0 @@ -35779,6 +36798,7 @@ genus Sulfurospirillum root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Sulfurospirillum root:Engineered:Wastewater 1.0 genus Sulfurospirillum root:Environmental:Terrestrial:Soil 2.0 genus Sulfurospirillum root:Environmental:Aquatic:Marine:Sediment 4.0 +genus Sulfurospirillum root:Engineered:Lab enrichment 1.0 genus Sulfurospirillum root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Sulfurospirillum root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 genus Sulfurospirillum root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 @@ -35786,12 +36806,13 @@ genus Sulfurospirillum root:Engineered:Wastewater:Industrial wastewater 1.0 genus Sulfurospirillum root:Environmental:Terrestrial:Soil:Sand 1.0 genus Sulfurospirillum root:Engineered:Bioreactor:Continuous culture 1.0 genus Sulfurospirillum root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Sulfurospirillum root:Engineered:Lab enrichment 1.0 genus Sulfurospirillum root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Sulfurospirillum root:Engineered:Biotransformation 1.0 +genus Sulfurospirillum root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 genus Sulfurospirillum root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 2.0 species Nitrospira sp. ND1 root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Nitrospira sp. ND1 root:Engineered:Wastewater:Activated Sludge 1.0 +species Nitrospira sp. ND1 root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Lentimicrobium saccharophilum root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Lentimicrobium saccharophilum root:Engineered:Bioreactor 4.0 species Lentimicrobium saccharophilum root:Engineered:Wastewater:Activated Sludge 4.0 @@ -35821,11 +36842,11 @@ species bacterium EMS root:Environmental:Aquatic:Freshwater:Sediment 1.0 species bacterium EMS root:Engineered:Wastewater:Activated Sludge 1.0 species Arcicella sp. 7A-626 root:Environmental:Aquatic:Freshwater:Sediment 1.0 order Tissierellales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Tissierellales root:Host-associated:Mammals:Digestive system:Fecal 1.0 +order Tissierellales root:Host-associated:Mammals:Digestive system:Fecal 2.0 order Tissierellales root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 order Tissierellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 order Tissierellales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -order Tissierellales root:Host-associated:Human 5.0 +order Tissierellales root:Host-associated:Human 6.0 order Tissierellales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Tissierellales root:Host-associated:Human:Digestive system:Large intestine 1.0 order Tissierellales root:Engineered:Bioreactor 3.0 @@ -35843,34 +36864,38 @@ order Tissierellales root:Engineered:Solid waste:Composting 1.0 order Tissierellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 order Tissierellales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 order Tissierellales root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 +order Tissierellales root:Engineered:Food production:Fermented seafood 1.0 order Tissierellales root:Host-associated:Animal:Digestive system 1.0 order Tissierellales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Tissierellales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 order Tissierellales root:Host-associated:Human:Reproductive system:Female 1.0 order Tissierellales root:Engineered:Wastewater:Water and sludge 2.0 order Tissierellales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +order Tissierellales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Tissierellales root:Host-associated:Insecta 1.0 order Tissierellales root:Engineered:Built environment 6.0 order Tissierellales root:Engineered:Biogas plant 1.0 order Tissierellales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 +order Tissierellales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Tissierellales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 order Fibrobacterales root:Environmental:Aquatic:Freshwater:Sediment 1.0 -order Fibrobacterales root:Host-associated:Mammals:Digestive system:Fecal 19.0 +order Fibrobacterales root:Host-associated:Mammals:Digestive system:Fecal 20.0 order Fibrobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 order Fibrobacterales root:Environmental:Aquatic:Marine 1.0 order Fibrobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -order Fibrobacterales root:Host-associated:Mammals:Digestive system 9.0 +order Fibrobacterales root:Host-associated:Mammals:Digestive system 10.0 order Fibrobacterales root:Engineered:Bioreactor 2.0 order Fibrobacterales root:Host-associated:Mammals 1.0 order Fibrobacterales root:Host-associated:Porifera 1.0 -order Fibrobacterales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 22.0 +order Fibrobacterales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 23.0 order Fibrobacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 -order Fibrobacterales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +order Fibrobacterales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 order Fibrobacterales root:Host-associated:Mammals:Digestive system:Large intestine 3.0 order Fibrobacterales root:Host-associated 1.0 order Fibrobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Fibrobacterales root:Host-associated:Mammals:Gastrointestinal tract 3.0 order Fibrobacterales root:Host-associated:Birds:Digestive system 1.0 +order Fibrobacterales root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Erysipelothrix root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Erysipelothrix root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 genus Erysipelothrix root:Engineered:Wastewater 1.0 @@ -35900,10 +36925,12 @@ genus Acholeplasma root:Environmental:Aquatic:Sediment 2.0 genus Acholeplasma root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Acholeplasma root:Environmental:Aquatic:Marine:Coastal 2.0 genus Acholeplasma root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +genus Acholeplasma root:Engineered:Food production:Fermented seafood 1.0 genus Acholeplasma root:Engineered:Bioreactor:Continuous culture 1.0 genus Acholeplasma root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Acholeplasma root:Engineered:Wastewater:Water and sludge 2.0 genus Acholeplasma root:Environmental:Aquatic:Marine:Intertidal zone 1.0 +genus Acholeplasma root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Soehngenia root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Anaerovorax root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Anaerovorax root:Host-associated:Mammals:Digestive system:Fecal 9.0 @@ -35911,6 +36938,7 @@ genus Anaerovorax root:Host-associated:Human:Digestive system:Large intestine:Fe genus Anaerovorax root:Host-associated:Mammals:Digestive system 3.0 genus Anaerovorax root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Anaerovorax root:Environmental:Terrestrial:Soil 1.0 +genus Anaerovorax root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Anaerovorax root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Anaerovorax root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Anaerovorax root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -35938,29 +36966,6 @@ species Treponema stenostreptum root:Environmental:Terrestrial:Soil 1.0 species Treponema stenostreptum root:Environmental:Aquatic:Sediment 1.0 species Treponema stenostreptum root:Host-associated:Plants:Root 1.0 species Treponema stenostreptum root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Sediment 1.0 -family Gallionellaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 -family Gallionellaceae root:Engineered:Bioreactor 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 -family Gallionellaceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 -family Gallionellaceae root:Environmental:Terrestrial:Soil 7.0 -family Gallionellaceae root:Environmental:Aquatic:Marine:Sediment 3.0 -family Gallionellaceae root:Environmental:Aquatic:Sediment 8.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Gallionellaceae root:Host-associated:Insecta:Digestive system 1.0 -family Gallionellaceae root:Environmental:Terrestrial:Soil:Clay 1.0 -family Gallionellaceae root:Engineered:Bioreactor:Continuous culture 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater 3.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 3.0 -family Gallionellaceae root:Engineered:Industrial production 1.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -family Gallionellaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 -family Gallionellaceae root:Engineered:Bioremediation:Hydrocarbon 1.0 -family Gallionellaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 -family Gallionellaceae root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 genus Desulfobacca root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus Desulfobacca root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Desulfobacca root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -35986,7 +36991,7 @@ species Gallionella sp. enrichment culture clone MWE C13 root:Environmental:Aqua species Gallionella sp. enrichment culture clone MWE C13 root:Environmental:Aquatic:Sediment 1.0 species Gallionella sp. enrichment culture clone MWE C13 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Freshwater:Sediment 2.0 -species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Marine:Sediment 3.0 species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Sediment 1.0 species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 species Chloroflexi bacterium RBG 13 46 9 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 @@ -36014,7 +37019,7 @@ genus Saccharofermentans root:Host-associated:Mammals:Digestive system 9.0 genus Saccharofermentans root:Engineered:Bioreactor 1.0 genus Saccharofermentans root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Saccharofermentans root:Environmental:Aquatic:Sediment 1.0 -genus Saccharofermentans root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 +genus Saccharofermentans root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 genus Saccharofermentans root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Saccharofermentans root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Saccharofermentans root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -36064,8 +37069,8 @@ order envOPS12 root:Host-associated:Plants:Rhizosphere 2.0 order envOPS12 root:Environmental:Aquatic:Freshwater:Wetlands 1.0 order envOPS12 root:Environmental:Terrestrial:Soil 8.0 order envOPS12 root:Environmental:Terrestrial:Soil:Wetlands 1.0 -order envOPS12 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 order envOPS12 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order envOPS12 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 order envOPS12 root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order envOPS12 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order envOPS12 root:Engineered:Bioreactor:Continuous culture 1.0 @@ -36081,7 +37086,7 @@ genus Zoogloea root:Engineered:Wastewater:Nutrient removal:Dissolved organics (a genus Zoogloea root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Zoogloea root:Environmental:Terrestrial:Soil:Agricultural 4.0 genus Zoogloea root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 -genus Zoogloea root:Engineered:Wastewater:Activated Sludge 11.0 +genus Zoogloea root:Engineered:Wastewater:Activated Sludge 12.0 genus Zoogloea root:Host-associated:Amphibia 2.0 genus Zoogloea root:Engineered:Wastewater 3.0 genus Zoogloea root:Environmental:Terrestrial:Soil:Contaminated 1.0 @@ -36104,8 +37109,8 @@ genus Zoogloea root:Environmental:Terrestrial:Soil:Boreal forest 1.0 genus Zoogloea root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Zoogloea root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 genus Zoogloea root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 -genus Zoogloea root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Zoogloea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +genus Zoogloea root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus HTCC root:Environmental:Aquatic:Freshwater:Sediment 1.0 genus HTCC root:Environmental:Aquatic:Marine 1.0 genus HTCC root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -36148,21 +37153,21 @@ species Dehalogenimonas phaeobacteroides root:Environmental:Terrestrial:Soil:For species Dehalogenimonas phaeobacteroides root:Host-associated:Plants 1.0 species HTCC kujiense root:Environmental:Aquatic:Freshwater:Sediment 1.0 species Blvii28 xylanolytica root:Environmental:Aquatic:Freshwater:Sediment 1.0 -class Mollicutes root:Host-associated:Mammals:Digestive system:Fecal 31.0 +class Mollicutes root:Host-associated:Mammals:Digestive system:Fecal 32.0 class Mollicutes root:Host-associated:Birds:Digestive system:Fecal 8.0 -class Mollicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 49.0 +class Mollicutes root:Host-associated:Human:Digestive system:Large intestine:Fecal 51.0 class Mollicutes root:Environmental:Aquatic:Marine 9.0 class Mollicutes root:Host-associated:Fish 2.0 class Mollicutes root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 class Mollicutes root:Environmental:Aquatic:Marine:Oceanic 1.0 -class Mollicutes root:Host-associated:Mammals:Digestive system 17.0 +class Mollicutes root:Host-associated:Mammals:Digestive system 19.0 class Mollicutes root:Host-associated:Human 4.0 class Mollicutes root:Host-associated:Plants 1.0 class Mollicutes root:Host-associated:Human:Digestive system:Large intestine 3.0 class Mollicutes root:Engineered:Bioreactor 19.0 class Mollicutes root:Engineered:Wastewater:Activated Sludge 9.0 class Mollicutes root:Host-associated:Human:Skin 1.0 -class Mollicutes root:Mixed 2.0 +class Mollicutes root:Mixed 3.0 class Mollicutes root:Host-associated:Mammals 6.0 class Mollicutes root:Engineered:Food production:Fermented beverages 3.0 class Mollicutes root:Host-associated:Human:Reproductive system:Vagina 11.0 @@ -36172,11 +37177,13 @@ class Mollicutes root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Mollicutes root:Host-associated:Plants:Phylloplane 1.0 class Mollicutes root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 class Mollicutes root:Environmental:Aquatic:Marine:Sediment 3.0 +class Mollicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 class Mollicutes root:Environmental:Aquatic:Freshwater:Lotic 2.0 class Mollicutes root:Environmental:Aquatic:Sediment 2.0 +class Mollicutes root:Host-associated:Mammals:Digestive system:Midgut 4.0 class Mollicutes root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 class Mollicutes root:Engineered:Biogas plant:Wet fermentation 4.0 -class Mollicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 19.0 +class Mollicutes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 20.0 class Mollicutes root:Environmental:Terrestrial:Soil:Grasslands 1.0 class Mollicutes root:Host-associated:Birds:Digestive system:Ceca 6.0 class Mollicutes root:Host-associated:Human:Digestive system 7.0 @@ -36192,12 +37199,12 @@ class Mollicutes root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 class Mollicutes root:Engineered:Food production 1.0 class Mollicutes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 4.0 class Mollicutes root:Host-associated:Mammals:Digestive system:Large intestine 5.0 +class Mollicutes root:Engineered:Food production:Fermented seafood 1.0 class Mollicutes root:Host-associated:Animal:Digestive system 2.0 class Mollicutes root:Host-associated:Insecta:Digestive system 1.0 class Mollicutes root:Host-associated 4.0 class Mollicutes root:Host-associated:Mollusca 1.0 -class Mollicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 -class Mollicutes root:Host-associated:Fish:Digestive system 2.0 +class Mollicutes root:Host-associated:Fish:Digestive system 3.0 class Mollicutes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 3.0 class Mollicutes root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 class Mollicutes root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -36205,13 +37212,14 @@ class Mollicutes root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class Mollicutes root:Host-associated:Fish:Digestive system:Foregut 4.0 class Mollicutes root:Engineered:Bioreactor:Continuous culture 2.0 class Mollicutes root:Engineered:Wastewater:Water and sludge 2.0 +class Mollicutes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Mollicutes root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 class Mollicutes root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Mollicutes root:Host-associated:Mammals:Gastrointestinal tract 1.0 class Mollicutes root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 class Mollicutes root:Host-associated:Birds:Digestive system:Digestive tube 1.0 class Mollicutes root:Host-associated:Reptile:Oral cavity 1.0 -class Mollicutes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Mollicutes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Mollicutes root:Host-associated:Fish:Digestive system:Intestine 2.0 class Mollicutes root:Host-associated:Insecta 1.0 class Mollicutes root:Engineered:Built environment 2.0 @@ -36226,11 +37234,11 @@ class Mollicutes root:Host-associated:Mammals:Respiratory system 1.0 class Mollicutes root:Host-associated:Birds 2.0 class Mollicutes root:Environmental:Aquatic:Aquaculture 1.0 class Mollicutes root:Host-associated:Fish:Skin 1.0 -class Mollicutes root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Mollicutes root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 2.0 class Mollicutes root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 class Mollicutes root:Engineered:Biotransformation:Mixed alcohol bioreactor 2.0 class Mollicutes root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 4.0 +class Mollicutes root:Host-associated:Mammals:Digestive system:Foregut 1.0 class Mollicutes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 class Mollicutes root:Host-associated:Birds:Respiratory system 2.0 class Mollicutes root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 @@ -36239,24 +37247,24 @@ class Mollicutes root:Host-associated:Human:Circulatory system 1.0 class Mollicutes root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 class Mollicutes root:Host-associated:Mollusca:Digestive system:Glands 1.0 class Mollicutes root:Host-associated:Invertebrates:Cnidaria 1.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system:Fecal 47.0 -family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Fecal 49.0 +family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 27.0 family Prevotellaceae root:Host-associated:Birds:Digestive system:Fecal 6.0 family Prevotellaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 family Prevotellaceae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -family Prevotellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 140.0 -family Prevotellaceae root:Environmental:Aquatic:Marine 3.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system 25.0 +family Prevotellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 148.0 +family Prevotellaceae root:Environmental:Aquatic:Marine 4.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system 27.0 family Prevotellaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Prevotellaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 -family Prevotellaceae root:Host-associated:Human 16.0 +family Prevotellaceae root:Host-associated:Human 17.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Large intestine 7.0 family Prevotellaceae root:Engineered:Bioreactor 1.0 family Prevotellaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Prevotellaceae root:Engineered:Wastewater:Activated Sludge 4.0 family Prevotellaceae root:Host-associated:Human:Skin 5.0 -family Prevotellaceae root:Mixed 3.0 -family Prevotellaceae root:Host-associated:Mammals 5.0 +family Prevotellaceae root:Mixed 5.0 +family Prevotellaceae root:Host-associated:Mammals 6.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Intestine 3.0 family Prevotellaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Prevotellaceae root:Engineered:Wastewater 6.0 @@ -36269,8 +37277,10 @@ family Prevotellaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Prevotellaceae root:Environmental:Terrestrial:Soil 3.0 family Prevotellaceae root:Environmental:Aquatic:Marine:Sediment 7.0 family Prevotellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +family Prevotellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 family Prevotellaceae root:Environmental:Aquatic:Sediment 2.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 30.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Midgut 4.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 31.0 family Prevotellaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 family Prevotellaceae root:Host-associated:Birds:Digestive system:Ceca 4.0 @@ -36279,9 +37289,9 @@ family Prevotellaceae root:Environmental:Aquatic:Freshwater 1.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 family Prevotellaceae root:Environmental:Aquatic:Thermal springs 1.0 family Prevotellaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 8.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 32.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 33.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 14.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 7.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 8.0 family Prevotellaceae root:Engineered:Lab enrichment:Defined media 1.0 family Prevotellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 family Prevotellaceae root:Host-associated:Mammals:Digestive system:Large intestine 8.0 @@ -36291,7 +37301,6 @@ family Prevotellaceae root:Host-associated:Animal:Digestive system 2.0 family Prevotellaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Prevotellaceae root:Engineered:Modeled 1.0 family Prevotellaceae root:Host-associated 1.0 -family Prevotellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Prevotellaceae root:Host-associated:Fish:Digestive system 1.0 family Prevotellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 4.0 @@ -36305,6 +37314,7 @@ family Prevotellaceae root:Environmental:Terrestrial 1.0 family Prevotellaceae root:Host-associated:Mammals:Gastrointestinal tract 4.0 family Prevotellaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Prevotellaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 +family Prevotellaceae root:Host-associated:Insecta 1.0 family Prevotellaceae root:Engineered:Built environment 2.0 family Prevotellaceae root:Host-associated:Birds:Digestive system 2.0 family Prevotellaceae root:Host-associated:Animal:Digestive system:Fecal 5.0 @@ -36313,13 +37323,14 @@ family Prevotellaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline: family Prevotellaceae root:Host-associated:Mammals:Respiratory system 1.0 family Prevotellaceae root:Host-associated:Birds 1.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 -family Prevotellaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Oral:Throat 1.0 family Prevotellaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 family Prevotellaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Prevotellaceae root:Host-associated:Human:Respiratory system 4.0 +family Prevotellaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Prevotellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 family Prevotellaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 +family Prevotellaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Prevotellaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 4.0 family Prevotellaceae root:Host-associated:Human:Circulatory system 1.0 family Prevotellaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 @@ -36331,14 +37342,16 @@ family Muribaculaceae root:Host-associated:Mammals:Digestive system:Fecal 23.0 family Muribaculaceae root:Host-associated:Birds:Digestive system:Fecal 3.0 family Muribaculaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 family Muribaculaceae root:Environmental:Aquatic:Marine 3.0 -family Muribaculaceae root:Host-associated:Mammals:Digestive system 16.0 +family Muribaculaceae root:Host-associated:Mammals:Digestive system 17.0 family Muribaculaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 family Muribaculaceae root:Host-associated:Human:Skin 1.0 family Muribaculaceae root:Host-associated:Mammals 3.0 family Muribaculaceae root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 family Muribaculaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Muribaculaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -family Muribaculaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 +family Muribaculaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 +family Muribaculaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Muribaculaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 family Muribaculaceae root:Host-associated:Human:Digestive system 3.0 family Muribaculaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Muribaculaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 @@ -36354,9 +37367,10 @@ family Muribaculaceae root:Host-associated:Mammals:Respiratory system 4.0 family Muribaculaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 family Muribaculaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 family Muribaculaceae root:Host-associated:Mammals:Skin 1.0 +family Muribaculaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Muribaculaceae root:Host-associated:Human:Circulatory system 1.0 genus Holdemanella root:Host-associated:Mammals:Digestive system:Fecal 1.0 -genus Holdemanella root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +genus Holdemanella root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 genus Holdemanella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Holdemanella root:Host-associated:Animal:Digestive system 1.0 genus Lactococcus root:Host-associated:Mammals:Digestive system:Fecal 3.0 @@ -36369,9 +37383,9 @@ genus Lactococcus root:Engineered:Food production:Silage fermentation 1.0 genus Lactococcus root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 genus Lactococcus root:Engineered:Wastewater:Activated Sludge 2.0 genus Lactococcus root:Host-associated:Mammals 2.0 -genus Lactococcus root:Engineered:Food production:Fermented beverages 2.0 +genus Lactococcus root:Engineered:Food production:Fermented beverages 3.0 genus Lactococcus root:Engineered:Wastewater 1.0 -genus Lactococcus root:Engineered:Food production:Dairy products 19.0 +genus Lactococcus root:Engineered:Food production:Dairy products 20.0 genus Lactococcus root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Lactococcus root:Environmental:Terrestrial:Soil 2.0 genus Lactococcus root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -36380,13 +37394,13 @@ genus Lactococcus root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Lactococcus root:Environmental:Aquatic:Sediment 1.0 genus Lactococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Lactococcus root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Lactococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Lactococcus root:Environmental:Aquatic:Marine:Coastal 1.0 genus Lactococcus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 genus Lactococcus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Lactococcus root:Engineered:Food production 5.0 genus Lactococcus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Lactococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Lactococcus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +genus Lactococcus root:Host-associated:Mammals:Digestive system:Large intestine 2.0 genus Lactococcus root:Engineered:Food production:Fermented seafood 2.0 genus Lactococcus root:Host-associated:Insecta:Digestive system 2.0 genus Lactococcus root:Host-associated:Fish:Digestive system 1.0 @@ -36405,26 +37419,29 @@ genus Lactococcus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt genus Lactococcus root:Engineered 1.0 genus Lactococcus root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 genus Lactococcus root:Environmental:Terrestrial:Agricultural field 1.0 -genus Blautia root:Host-associated:Mammals:Digestive system:Fecal 19.0 +genus Blautia root:Host-associated:Mammals:Digestive system:Fecal 20.0 genus Blautia root:Host-associated:Birds:Digestive system:Fecal 4.0 -genus Blautia root:Host-associated:Human:Digestive system:Large intestine:Fecal 79.0 +genus Blautia root:Host-associated:Human:Digestive system:Large intestine:Fecal 86.0 genus Blautia root:Environmental:Aquatic:Marine 2.0 genus Blautia root:Host-associated:Mammals:Digestive system 7.0 genus Blautia root:Host-associated:Human 1.0 -genus Blautia root:Host-associated:Human:Digestive system:Large intestine 6.0 +genus Blautia root:Host-associated:Human:Digestive system:Large intestine 7.0 genus Blautia root:Engineered:Bioreactor 1.0 genus Blautia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Blautia root:Engineered:Wastewater:Activated Sludge 1.0 -genus Blautia root:Host-associated:Human:Digestive system:Intestine 2.0 +genus Blautia root:Host-associated:Human:Digestive system:Intestine 3.0 genus Blautia root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 genus Blautia root:Environmental:Terrestrial:Soil 1.0 genus Blautia root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Blautia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Blautia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Blautia root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Blautia root:Host-associated:Birds:Digestive system:Ceca 3.0 genus Blautia root:Host-associated:Human:Digestive system 14.0 -genus Blautia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 13.0 +genus Blautia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 14.0 genus Blautia root:Host-associated:Arthropoda:Digestive system:Gut 2.0 genus Blautia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 -genus Blautia root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +genus Blautia root:Host-associated:Mammals:Digestive system:Large intestine 3.0 genus Blautia root:Host-associated:Animal:Digestive system 2.0 genus Blautia root:Host-associated:Insecta:Digestive system 2.0 genus Blautia root:Host-associated 1.0 @@ -36436,21 +37453,22 @@ genus Blautia root:Host-associated:Animal:Digestive system:Fecal 3.0 genus Blautia root:Host-associated:Reptile 1.0 genus Blautia root:Host-associated:Birds 1.0 genus Blautia root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +genus Blautia root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Blautia root:Host-associated:Human:Circulatory system:Blood 1.0 genus Blautia root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 genus Blautia root:Host-associated:Mammals:Milk 1.0 -genus Faecalibacterium root:Host-associated:Mammals:Digestive system:Fecal 11.0 +genus Faecalibacterium root:Host-associated:Mammals:Digestive system:Fecal 12.0 genus Faecalibacterium root:Host-associated:Birds:Digestive system:Fecal 9.0 -genus Faecalibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 152.0 +genus Faecalibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 163.0 genus Faecalibacterium root:Environmental:Aquatic:Marine 2.0 genus Faecalibacterium root:Host-associated:Mammals:Digestive system 3.0 genus Faecalibacterium root:Host-associated:Human 4.0 -genus Faecalibacterium root:Host-associated:Human:Digestive system:Large intestine 10.0 +genus Faecalibacterium root:Host-associated:Human:Digestive system:Large intestine 11.0 genus Faecalibacterium root:Engineered:Bioreactor 2.0 genus Faecalibacterium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Faecalibacterium root:Engineered:Wastewater:Activated Sludge 3.0 genus Faecalibacterium root:Host-associated:Human:Skin 1.0 -genus Faecalibacterium root:Mixed 1.0 +genus Faecalibacterium root:Mixed 2.0 genus Faecalibacterium root:Host-associated:Human:Digestive system:Intestine 3.0 genus Faecalibacterium root:Engineered:Wastewater 8.0 genus Faecalibacterium root:Host-associated:Human:Digestive system:Oral 1.0 @@ -36458,29 +37476,29 @@ genus Faecalibacterium root:Engineered:Food production:Dairy products 1.0 genus Faecalibacterium root:Host-associated:Plants:Rhizosphere 1.0 genus Faecalibacterium root:Environmental:Terrestrial:Soil 1.0 genus Faecalibacterium root:Environmental:Aquatic:Marine:Sediment 4.0 -genus Faecalibacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Faecalibacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Faecalibacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Faecalibacterium root:Environmental:Aquatic:Sediment 1.0 +genus Faecalibacterium root:Engineered:Lab enrichment 1.0 genus Faecalibacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Faecalibacterium root:Host-associated:Birds:Digestive system:Ceca 8.0 genus Faecalibacterium root:Host-associated:Human:Digestive system 31.0 genus Faecalibacterium root:Environmental:Aquatic:Freshwater 1.0 genus Faecalibacterium root:Environmental:Aquatic:Marine:Coastal 1.0 -genus Faecalibacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 7.0 +genus Faecalibacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 8.0 genus Faecalibacterium root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 9.0 genus Faecalibacterium root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Faecalibacterium root:Host-associated:Animal:Digestive system 1.0 genus Faecalibacterium root:Engineered:Wastewater:Industrial wastewater 1.0 genus Faecalibacterium root:Engineered:Modeled 1.0 genus Faecalibacterium root:Host-associated 1.0 -genus Faecalibacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Faecalibacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Faecalibacterium root:Engineered:Wastewater:Water and sludge 1.0 +genus Faecalibacterium root:Engineered:Wastewater:Water and sludge 2.0 genus Faecalibacterium root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 6.0 genus Faecalibacterium root:Environmental:Terrestrial 1.0 genus Faecalibacterium root:Host-associated:Mammals:Gastrointestinal tract 2.0 genus Faecalibacterium root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 genus Faecalibacterium root:Host-associated:Birds:Digestive system 6.0 -genus Faecalibacterium root:Engineered:Lab enrichment 1.0 genus Faecalibacterium root:Host-associated:Animal:Digestive system:Fecal 2.0 genus Faecalibacterium root:Host-associated:Birds 3.0 genus Faecalibacterium root:Host-associated:Human:Respiratory system 1.0 @@ -36497,7 +37515,7 @@ species Peptostreptococcaceae bacterium VA2 root:Host-associated:Mammals:Digesti species Peptostreptococcaceae bacterium VA2 root:Host-associated:Animal:Digestive system 1.0 species Peptostreptococcaceae bacterium VA2 root:Host-associated:Birds:Digestive system 1.0 species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system:Fecal 7.0 -species Collinsella aerofaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 37.0 +species Collinsella aerofaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 40.0 species Collinsella aerofaciens root:Environmental:Aquatic:Marine 1.0 species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system 4.0 species Collinsella aerofaciens root:Host-associated:Human 2.0 @@ -36512,16 +37530,18 @@ species Collinsella aerofaciens root:Host-associated:Human:Reproductive system:V species Collinsella aerofaciens root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Collinsella aerofaciens root:Environmental:Terrestrial:Soil 1.0 species Collinsella aerofaciens root:Environmental:Aquatic:Marine:Sediment 3.0 +species Collinsella aerofaciens root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Collinsella aerofaciens root:Engineered:Lab enrichment 1.0 species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Collinsella aerofaciens root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Collinsella aerofaciens root:Host-associated:Human:Digestive system 12.0 species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Collinsella aerofaciens root:Host-associated:Animal:Digestive system 1.0 species Collinsella aerofaciens root:Host-associated:Human:Reproductive system:Female 1.0 species Collinsella aerofaciens root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 species Collinsella aerofaciens root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Collinsella aerofaciens root:Engineered:Built environment 4.0 -species Collinsella aerofaciens root:Engineered:Lab enrichment 1.0 species Collinsella aerofaciens root:Host-associated:Animal:Digestive system:Fecal 2.0 species Collinsella aerofaciens root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Collinsella aerofaciens root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 @@ -36534,11 +37554,12 @@ species Culturomica massiliensis root:Environmental:Aquatic:Marine 1.0 species Culturomica massiliensis root:Host-associated:Human 1.0 species Culturomica massiliensis root:Host-associated:Mammals 1.0 species Culturomica massiliensis root:Engineered:Food production:Fermented beverages 1.0 +species Culturomica massiliensis root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Culturomica massiliensis root:Host-associated:Human:Digestive system 4.0 species Culturomica massiliensis root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 species Culturomica massiliensis root:Host-associated:Animal:Digestive system:Fecal 1.0 species Alloprevotella sp. feline oral taxon 309 root:Host-associated:Mammals:Digestive system:Fecal 10.0 -species Alloprevotella sp. feline oral taxon 309 root:Host-associated:Mammals:Digestive system 3.0 +species Alloprevotella sp. feline oral taxon 309 root:Host-associated:Mammals:Digestive system 4.0 species Alloprevotella sp. feline oral taxon 309 root:Host-associated:Mammals 1.0 species Alloprevotella sp. feline oral taxon 309 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Alloprevotella sp. feline oral taxon 309 root:Engineered:Lab enrichment:Defined media 1.0 @@ -36559,6 +37580,7 @@ species Ruminococcus sp. YE281 root:Host-associated:Mammals:Digestive system:Fec species Ruminococcus sp. YE281 root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 species Ruminococcus sp. YE281 root:Host-associated:Human:Digestive system:Large intestine 1.0 species Ruminococcus sp. YE281 root:Host-associated:Mammals 2.0 +species Ruminococcus sp. YE281 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Ruminococcus sp. YE281 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Ruminococcus sp. YE281 root:Host-associated:Animal:Digestive system:Fecal 1.0 species Ruminococcus sp. YE281 root:Host-associated:Reptile 1.0 @@ -36567,33 +37589,36 @@ species Stackebrandtia endophytica root:Host-associated:Mammals:Digestive system order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Fecal 23.0 order Desulfovibrionales root:Host-associated:Birds:Digestive system:Fecal 7.0 order Desulfovibrionales root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -order Desulfovibrionales root:Host-associated:Human:Digestive system:Large intestine:Fecal 61.0 +order Desulfovibrionales root:Host-associated:Human:Digestive system:Large intestine:Fecal 65.0 order Desulfovibrionales root:Environmental:Aquatic:Marine 10.0 -order Desulfovibrionales root:Host-associated:Mammals:Digestive system 11.0 +order Desulfovibrionales root:Host-associated:Mammals:Digestive system 12.0 order Desulfovibrionales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 order Desulfovibrionales root:Host-associated:Human 1.0 -order Desulfovibrionales root:Host-associated:Human:Digestive system:Large intestine 6.0 +order Desulfovibrionales root:Host-associated:Human:Digestive system:Large intestine 7.0 order Desulfovibrionales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Desulfovibrionales root:Engineered:Bioreactor 9.0 order Desulfovibrionales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Desulfovibrionales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 order Desulfovibrionales root:Engineered:Wastewater:Activated Sludge 1.0 order Desulfovibrionales root:Host-associated:Human:Skin 1.0 -order Desulfovibrionales root:Mixed 2.0 -order Desulfovibrionales root:Host-associated:Mammals 1.0 +order Desulfovibrionales root:Mixed 3.0 +order Desulfovibrionales root:Host-associated:Mammals 2.0 order Desulfovibrionales root:Engineered:Wastewater 1.0 order Desulfovibrionales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Sediment 3.0 order Desulfovibrionales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Desulfovibrionales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Desulfovibrionales root:Environmental:Aquatic:Sediment 1.0 +order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Desulfovibrionales root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 +order Desulfovibrionales root:Engineered:Lab enrichment 3.0 order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Desulfovibrionales root:Host-associated:Birds:Digestive system:Ceca 4.0 order Desulfovibrionales root:Host-associated:Human:Digestive system 9.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 order Desulfovibrionales root:Environmental:Terrestrial:Soil:Desert 2.0 -order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 18.0 +order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 19.0 order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 order Desulfovibrionales root:Engineered:Lab enrichment:Defined media 1.0 @@ -36605,7 +37630,6 @@ order Desulfovibrionales root:Host-associated:Animal:Digestive system 1.0 order Desulfovibrionales root:Engineered:Modeled 1.0 order Desulfovibrionales root:Host-associated:Insecta:Digestive system 1.0 order Desulfovibrionales root:Host-associated 1.0 -order Desulfovibrionales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Desulfovibrionales root:Host-associated:Fish:Digestive system 1.0 order Desulfovibrionales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 order Desulfovibrionales root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -36616,7 +37640,6 @@ order Desulfovibrionales root:Engineered:Wastewater:Water and sludge 1.0 order Desulfovibrionales root:Host-associated:Mammals:Gastrointestinal tract 2.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Desulfovibrionales root:Host-associated:Birds:Digestive system 2.0 -order Desulfovibrionales root:Engineered:Lab enrichment 3.0 order Desulfovibrionales root:Host-associated:Animal:Digestive system:Fecal 1.0 order Desulfovibrionales root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 2.0 @@ -36626,7 +37649,6 @@ order Desulfovibrionales root:Host-associated:Mammals:Respiratory system 4.0 order Desulfovibrionales root:Host-associated:Birds 2.0 order Desulfovibrionales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 order Desulfovibrionales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Desulfovibrionales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Desulfovibrionales root:Engineered:Bioremediation 1.0 order Desulfovibrionales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 7.0 @@ -36638,23 +37660,26 @@ order Desulfovibrionales root:Environmental:Aquatic:Non-marine Saline and Alkali order Desulfovibrionales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 order Desulfovibrionales root:Host-associated:Mammals:Excretory system 1.0 +order Desulfovibrionales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Desulfovibrionales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Desulfovibrionales root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 -order Eggerthellales root:Host-associated:Mammals:Digestive system:Fecal 17.0 -order Eggerthellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 27.0 +order Eggerthellales root:Host-associated:Mammals:Digestive system:Fecal 19.0 +order Eggerthellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 32.0 order Eggerthellales root:Host-associated:Mammals:Digestive system 7.0 order Eggerthellales root:Host-associated:Human 1.0 -order Eggerthellales root:Host-associated:Human:Digestive system:Large intestine 4.0 +order Eggerthellales root:Host-associated:Human:Digestive system:Large intestine 5.0 order Eggerthellales root:Host-associated:Mammals 1.0 order Eggerthellales root:Host-associated:Human:Digestive system:Intestine 1.0 order Eggerthellales root:Host-associated:Human:Reproductive system:Vagina 1.0 order Eggerthellales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Eggerthellales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Eggerthellales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Eggerthellales root:Host-associated:Birds:Digestive system:Ceca 1.0 order Eggerthellales root:Host-associated:Human:Digestive system 5.0 order Eggerthellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 order Eggerthellales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Eggerthellales root:Host-associated:Mammals:Digestive system:Large intestine 5.0 +order Eggerthellales root:Engineered:Food production:Fermented seafood 1.0 order Eggerthellales root:Host-associated:Animal:Digestive system 2.0 order Eggerthellales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Eggerthellales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 @@ -36662,15 +37687,17 @@ order Eggerthellales root:Host-associated:Birds:Digestive system 1.0 order Eggerthellales root:Host-associated:Animal:Digestive system:Fecal 1.0 order Eggerthellales root:Host-associated:Mammals:Respiratory system 1.0 order Eggerthellales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 +order Eggerthellales root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Tannerellaceae root:Host-associated:Mammals:Digestive system:Fecal 7.0 family Tannerellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Tannerellaceae root:Host-associated:Birds:Digestive system:Fecal 5.0 -family Tannerellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 53.0 +family Tannerellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 58.0 family Tannerellaceae root:Host-associated:Mammals:Digestive system 3.0 -family Tannerellaceae root:Host-associated:Human:Digestive system:Large intestine 6.0 +family Tannerellaceae root:Host-associated:Human:Digestive system:Large intestine 7.0 family Tannerellaceae root:Host-associated:Human:Digestive system:Intestine 2.0 family Tannerellaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Tannerellaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +family Tannerellaceae root:Engineered:Lab enrichment 1.0 family Tannerellaceae root:Host-associated:Birds:Digestive system:Ceca 2.0 family Tannerellaceae root:Host-associated:Human:Digestive system 15.0 family Tannerellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 @@ -36681,31 +37708,32 @@ family Tannerellaceae root:Host-associated:Mammals:Digestive system:Large intest family Tannerellaceae root:Host-associated:Insecta:Digestive system 1.0 family Tannerellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Tannerellaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 -family Tannerellaceae root:Engineered:Lab enrichment 1.0 family Tannerellaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Tannerellaceae root:Host-associated:Reptile 1.0 family Tannerellaceae root:Host-associated:Mammals:Respiratory system 4.0 family Tannerellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 -family Eggerthellaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 -family Eggerthellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +family Tannerellaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +family Eggerthellaceae root:Host-associated:Mammals:Digestive system:Fecal 6.0 +family Eggerthellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 family Eggerthellaceae root:Host-associated:Mammals:Digestive system 2.0 family Eggerthellaceae root:Host-associated:Human 1.0 family Eggerthellaceae root:Host-associated:Human:Reproductive system:Vagina 1.0 +family Eggerthellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Eggerthellaceae root:Host-associated:Human:Digestive system 1.0 family Eggerthellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 family Eggerthellaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family Eggerthellaceae root:Host-associated:Animal:Digestive system 1.0 family Eggerthellaceae root:Host-associated:Mammals:Respiratory system 1.0 family Eggerthellaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 -genus Lactobacillus root:Host-associated:Mammals:Digestive system:Fecal 40.0 +genus Lactobacillus root:Host-associated:Mammals:Digestive system:Fecal 41.0 genus Lactobacillus root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 genus Lactobacillus root:Host-associated:Birds:Digestive system:Fecal 11.0 -genus Lactobacillus root:Host-associated:Human:Digestive system:Large intestine:Fecal 32.0 +genus Lactobacillus root:Host-associated:Human:Digestive system:Large intestine:Fecal 33.0 genus Lactobacillus root:Environmental:Aquatic:Marine 3.0 -genus Lactobacillus root:Host-associated:Mammals:Digestive system 18.0 +genus Lactobacillus root:Host-associated:Mammals:Digestive system 19.0 genus Lactobacillus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Lactobacillus root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Lactobacillus root:Host-associated:Human 4.0 +genus Lactobacillus root:Host-associated:Human 5.0 genus Lactobacillus root:Host-associated:Plants 1.0 genus Lactobacillus root:Engineered:Food production:Silage fermentation 1.0 genus Lactobacillus root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -36715,19 +37743,22 @@ genus Lactobacillus root:Engineered:Wastewater:Activated Sludge 2.0 genus Lactobacillus root:Host-associated:Human:Skin 8.0 genus Lactobacillus root:Mixed 6.0 genus Lactobacillus root:Host-associated:Mammals 5.0 -genus Lactobacillus root:Engineered:Food production:Fermented beverages 11.0 +genus Lactobacillus root:Engineered:Food production:Fermented beverages 12.0 genus Lactobacillus root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 genus Lactobacillus root:Engineered:Wastewater 2.0 genus Lactobacillus root:Host-associated:Human:Reproductive system:Vagina 15.0 genus Lactobacillus root:Host-associated:Human:Digestive system:Oral 7.0 -genus Lactobacillus root:Engineered:Food production:Dairy products 19.0 +genus Lactobacillus root:Engineered:Food production:Dairy products 20.0 genus Lactobacillus root:Environmental:Terrestrial:Soil 5.0 genus Lactobacillus root:Environmental:Aquatic:Marine:Sediment 11.0 genus Lactobacillus root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Lactobacillus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 3.0 genus Lactobacillus root:Environmental:Aquatic:Sediment 1.0 +genus Lactobacillus root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Lactobacillus root:Engineered:Biogas plant:Wet fermentation 2.0 genus Lactobacillus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 genus Lactobacillus root:Host-associated:Birds:Digestive system:Ceca 9.0 +genus Lactobacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Lactobacillus root:Host-associated:Human:Digestive system 4.0 genus Lactobacillus root:Environmental:Aquatic:Freshwater 1.0 genus Lactobacillus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -36741,16 +37772,14 @@ genus Lactobacillus root:Engineered:Lab enrichment:Defined media 1.0 genus Lactobacillus root:Engineered:Food production 8.0 genus Lactobacillus root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 7.0 genus Lactobacillus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Lactobacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Lactobacillus root:Host-associated:Mammals:Digestive system:Large intestine 10.0 +genus Lactobacillus root:Host-associated:Mammals:Digestive system:Large intestine 11.0 genus Lactobacillus root:Engineered:Food production:Fermented seafood 2.0 genus Lactobacillus root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 genus Lactobacillus root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Lactobacillus root:Host-associated:Animal:Digestive system 4.0 genus Lactobacillus root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Lactobacillus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -genus Lactobacillus root:Host-associated:Insecta:Digestive system 2.0 -genus Lactobacillus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Lactobacillus root:Host-associated:Insecta:Digestive system 3.0 genus Lactobacillus root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 genus Lactobacillus root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 genus Lactobacillus root:Host-associated:Fish:Digestive system:Foregut 4.0 @@ -36776,12 +37805,12 @@ genus Lactobacillus root:Host-associated:Birds 2.0 genus Lactobacillus root:Host-associated:Animal 1.0 genus Lactobacillus root:Engineered 2.0 genus Lactobacillus root:Engineered:Industrial production 1.0 -genus Lactobacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Lactobacillus root:Host-associated:Arthropoda 1.0 genus Lactobacillus root:Host-associated:Human:Respiratory system 1.0 genus Lactobacillus root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 genus Lactobacillus root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 6.0 genus Lactobacillus root:Host-associated:Mammals:Skin 1.0 +genus Lactobacillus root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Lactobacillus root:Host-associated:Birds:Respiratory system 2.0 genus Lactobacillus root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Lactobacillus root:Host-associated:Mollusca:Digestive system 1.0 @@ -36795,15 +37824,16 @@ genus Lactobacillus root:Host-associated:Human:Respiratory system:Nasopharyngeal genus Lactobacillus root:Engineered:Solid waste:Solid animal waste 1.0 genus Parabacteroides root:Host-associated:Mammals:Digestive system:Fecal 15.0 genus Parabacteroides root:Host-associated:Birds:Digestive system:Fecal 5.0 -genus Parabacteroides root:Host-associated:Human:Digestive system:Large intestine:Fecal 79.0 +genus Parabacteroides root:Host-associated:Human:Digestive system:Large intestine:Fecal 86.0 genus Parabacteroides root:Host-associated:Mammals:Digestive system 6.0 genus Parabacteroides root:Host-associated:Human 1.0 -genus Parabacteroides root:Host-associated:Human:Digestive system:Large intestine 9.0 +genus Parabacteroides root:Host-associated:Human:Digestive system:Large intestine 10.0 genus Parabacteroides root:Host-associated:Human:Digestive system:Intestine 2.0 genus Parabacteroides root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Parabacteroides root:Environmental:Terrestrial:Soil 1.0 genus Parabacteroides root:Environmental:Aquatic:Marine:Sediment 1.0 genus Parabacteroides root:Environmental:Aquatic:Sediment 1.0 +genus Parabacteroides root:Engineered:Lab enrichment 1.0 genus Parabacteroides root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Parabacteroides root:Host-associated:Birds:Digestive system:Ceca 2.0 genus Parabacteroides root:Host-associated:Human:Digestive system 17.0 @@ -36819,13 +37849,12 @@ genus Parabacteroides root:Host-associated:Mammals:Gastrointestinal tract:Intest genus Parabacteroides root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Parabacteroides root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 genus Parabacteroides root:Host-associated:Mammals:Gastrointestinal tract 1.0 -genus Parabacteroides root:Engineered:Lab enrichment 1.0 genus Parabacteroides root:Host-associated:Animal:Digestive system:Fecal 2.0 genus Parabacteroides root:Host-associated:Reptile 1.0 genus Parabacteroides root:Host-associated:Mammals:Respiratory system 4.0 genus Parabacteroides root:Host-associated:Birds 1.0 genus Parabacteroides root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 -genus Helicobacter root:Host-associated:Mammals:Digestive system:Fecal 4.0 +genus Helicobacter root:Host-associated:Mammals:Digestive system:Fecal 5.0 genus Helicobacter root:Host-associated:Mammals:Digestive system 5.0 genus Helicobacter root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Helicobacter root:Host-associated:Human:Digestive system:Intestine 1.0 @@ -36842,27 +37871,29 @@ genus Helicobacter root:Host-associated:Mammals:Digestive system:Large intestine genus Oscillibacter root:Host-associated:Mammals:Digestive system:Fecal 18.0 genus Oscillibacter root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Oscillibacter root:Host-associated:Birds:Digestive system:Fecal 4.0 -genus Oscillibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 48.0 +genus Oscillibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 54.0 genus Oscillibacter root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Oscillibacter root:Host-associated:Mammals:Digestive system 8.0 genus Oscillibacter root:Host-associated:Human 1.0 -genus Oscillibacter root:Host-associated:Human:Digestive system:Large intestine 7.0 +genus Oscillibacter root:Host-associated:Human:Digestive system:Large intestine 8.0 genus Oscillibacter root:Engineered:Bioreactor 1.0 genus Oscillibacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Oscillibacter root:Engineered:Wastewater:Activated Sludge 2.0 genus Oscillibacter root:Host-associated:Human:Skin 1.0 +genus Oscillibacter root:Mixed 1.0 genus Oscillibacter root:Host-associated:Mammals 1.0 genus Oscillibacter root:Host-associated:Human:Digestive system:Intestine 2.0 genus Oscillibacter root:Engineered:Wastewater 1.0 genus Oscillibacter root:Environmental:Terrestrial:Soil 1.0 +genus Oscillibacter root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Oscillibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Oscillibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Oscillibacter root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Oscillibacter root:Host-associated:Human:Digestive system 13.0 -genus Oscillibacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 7.0 +genus Oscillibacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 8.0 genus Oscillibacter root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 genus Oscillibacter root:Host-associated:Mammals:Digestive system:Large intestine 2.0 genus Oscillibacter root:Host-associated:Animal:Digestive system 3.0 -genus Oscillibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Oscillibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 genus Oscillibacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Oscillibacter root:Environmental:Terrestrial 1.0 @@ -36874,6 +37905,7 @@ genus Oscillibacter root:Host-associated:Mammals:Respiratory system 2.0 genus Oscillibacter root:Host-associated:Birds 1.0 genus Oscillibacter root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 genus Oscillibacter root:Host-associated:Mammals:Skin 1.0 +genus Oscillibacter root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Oscillibacter root:Host-associated:Human:Circulatory system 1.0 genus Enterorhabdus root:Host-associated:Mammals:Digestive system:Fecal 3.0 genus Enterorhabdus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -36892,14 +37924,15 @@ species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive syst species Bifidobacterium pseudolongum root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Bifidobacterium pseudolongum root:Engineered:Bioreactor 1.0 species Bifidobacterium pseudolongum root:Engineered:Wastewater:Activated Sludge 1.0 +species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Bifidobacterium pseudolongum root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine 2.0 species Bifidobacterium pseudolongum root:Host-associated:Mammals:Respiratory system 3.0 -species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bifidobacterium pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Clostridium sp. ASF356 root:Host-associated:Mammals:Digestive system:Fecal 5.0 species Clostridium sp. ASF356 root:Host-associated:Mammals:Digestive system 2.0 +species Clostridium sp. ASF356 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Clostridium sp. ASF356 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Clostridium sp. ASF356 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Clostridium sp. ASF356 root:Host-associated:Animal:Digestive system 1.0 @@ -36915,6 +37948,7 @@ species Anaerotruncus sp. G3(2012) root:Host-associated:Mammals:Digestive system species Anaerotruncus sp. G3(2012) root:Host-associated:Mammals:Respiratory system 1.0 species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Digestive system 5.0 +species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Lachnospiraceae bacterium 10-1 root:Host-associated:Mammals:Respiratory system 2.0 @@ -36951,16 +37985,18 @@ class Erysipelotrichi root:Host-associated:Plants:Rhizosphere 1.0 class Erysipelotrichi root:Environmental:Terrestrial:Soil 1.0 class Erysipelotrichi root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 class Erysipelotrichi root:Environmental:Aquatic 2.0 +class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Midgut 2.0 +class Erysipelotrichi root:Engineered:Lab enrichment 1.0 class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Stomach:Rumen 12.0 class Erysipelotrichi root:Environmental:Terrestrial:Soil:Grasslands 2.0 class Erysipelotrichi root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 class Erysipelotrichi root:Host-associated:Birds:Digestive system:Ceca 2.0 +class Erysipelotrichi root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Erysipelotrichi root:Host-associated:Human:Digestive system 2.0 class Erysipelotrichi root:Engineered:Solid waste:Composting 1.0 class Erysipelotrichi root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 32.0 class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -class Erysipelotrichi root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Large intestine 1.0 class Erysipelotrichi root:Host-associated:Insecta:Digestive system 1.0 class Erysipelotrichi root:Host-associated 3.0 @@ -36969,23 +38005,21 @@ class Erysipelotrichi root:Engineered:Wastewater:Water and sludge 2.0 class Erysipelotrichi root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 class Erysipelotrichi root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Erysipelotrichi root:Host-associated:Insecta 1.0 -class Erysipelotrichi root:Engineered:Lab enrichment 1.0 class Erysipelotrichi root:Engineered:Biogas plant 2.0 class Erysipelotrichi root:Engineered:Food production:Fermented vegetables 1.0 class Erysipelotrichi root:Host-associated:Reptile 1.0 class Erysipelotrichi root:Host-associated:Birds 1.0 class Erysipelotrichi root:Environmental:Aquatic:Aquaculture 1.0 -class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Midgut 2.0 class Erysipelotrichi root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 class Erysipelotrichi root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Erysipelotrichi root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 class Erysipelotrichi root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 class Erysipelotrichi root:Host-associated:Mammals:Excretory system 1.0 class Erysipelotrichi root:Host-associated:Mammals:Milk 1.0 -family Enterococcaceae root:Host-associated:Mammals:Digestive system:Fecal 6.0 +family Enterococcaceae root:Host-associated:Mammals:Digestive system:Fecal 7.0 family Enterococcaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Enterococcaceae root:Host-associated:Birds:Digestive system:Fecal 4.0 -family Enterococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 36.0 +family Enterococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 37.0 family Enterococcaceae root:Environmental:Aquatic:Marine 1.0 family Enterococcaceae root:Host-associated:Mammals:Digestive system 1.0 family Enterococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -36995,24 +38029,26 @@ family Enterococcaceae root:Engineered:Food production:Silage fermentation 1.0 family Enterococcaceae root:Host-associated:Human:Digestive system:Large intestine 3.0 family Enterococcaceae root:Engineered:Wastewater:Activated Sludge 2.0 family Enterococcaceae root:Mixed 1.0 -family Enterococcaceae root:Engineered:Food production:Fermented beverages 2.0 +family Enterococcaceae root:Engineered:Food production:Fermented beverages 3.0 family Enterococcaceae root:Host-associated:Human:Reproductive system:Vagina 1.0 family Enterococcaceae root:Engineered:Food production:Dairy products 17.0 family Enterococcaceae root:Environmental:Terrestrial:Soil 5.0 family Enterococcaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Enterococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +family Enterococcaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Enterococcaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 +family Enterococcaceae root:Engineered:Lab enrichment 1.0 family Enterococcaceae root:Host-associated:Birds:Digestive system:Ceca 2.0 family Enterococcaceae root:Host-associated:Human:Digestive system 3.0 family Enterococcaceae root:Environmental:Aquatic:Thermal springs 1.0 family Enterococcaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 family Enterococcaceae root:Host-associated:Arthropoda:Digestive system:Gut 2.0 family Enterococcaceae root:Engineered:Food production 4.0 -family Enterococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -family Enterococcaceae root:Engineered:Food production:Fermented seafood 1.0 +family Enterococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 +family Enterococcaceae root:Engineered:Food production:Fermented seafood 2.0 family Enterococcaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Enterococcaceae root:Engineered:Modeled 1.0 -family Enterococcaceae root:Host-associated:Insecta:Digestive system 1.0 +family Enterococcaceae root:Host-associated:Insecta:Digestive system 2.0 family Enterococcaceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Enterococcaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 family Enterococcaceae root:Engineered:Wastewater:Water and sludge 1.0 @@ -37020,7 +38056,6 @@ family Enterococcaceae root:Host-associated:Birds:Digestive system:Digestive tub family Enterococcaceae root:Environmental:Terrestrial:Soil:Crop 1.0 family Enterococcaceae root:Host-associated:Insecta 2.0 family Enterococcaceae root:Host-associated:Birds:Digestive system 3.0 -family Enterococcaceae root:Engineered:Lab enrichment 1.0 family Enterococcaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Enterococcaceae root:Engineered:Food production:Fermented vegetables 4.0 family Enterococcaceae root:Host-associated:Reptile 1.0 @@ -37062,16 +38097,17 @@ genus [Ruminococcus] root:Host-associated 1.0 genus [Ruminococcus] root:Host-associated:Birds 1.0 genus [Ruminococcus] root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 genus Campylobacter root:Host-associated:Mammals:Digestive system:Fecal 2.0 -genus Campylobacter root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 +genus Campylobacter root:Host-associated:Human:Digestive system:Oral:Saliva 6.0 genus Campylobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 genus Campylobacter root:Environmental:Aquatic:Marine 1.0 -genus Campylobacter root:Host-associated:Mammals:Digestive system 2.0 +genus Campylobacter root:Host-associated:Mammals:Digestive system 3.0 genus Campylobacter root:Host-associated:Human 1.0 genus Campylobacter root:Host-associated:Plants 1.0 genus Campylobacter root:Host-associated:Mammals 2.0 genus Campylobacter root:Host-associated:Human:Digestive system:Oral 5.0 genus Campylobacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Campylobacter root:Environmental:Aquatic 1.0 +genus Campylobacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Campylobacter root:Engineered:Biogas plant:Wet fermentation 1.0 genus Campylobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Campylobacter root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 @@ -37101,30 +38137,31 @@ genus [Eubacterium] root:Environmental:Terrestrial:Soil 2.0 genus [Eubacterium] root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus [Eubacterium] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 genus [Eubacterium] root:Engineered:Biogas plant 1.0 -genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Fecal 24.0 +genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Fecal 25.0 genus Phascolarctobacterium root:Host-associated:Birds:Digestive system:Fecal 4.0 genus Phascolarctobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 23.0 -genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system 9.0 +genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system 11.0 genus Phascolarctobacterium root:Host-associated:Human 1.0 genus Phascolarctobacterium root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Phascolarctobacterium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Phascolarctobacterium root:Mixed 1.0 +genus Phascolarctobacterium root:Mixed 2.0 genus Phascolarctobacterium root:Host-associated:Mammals 4.0 genus Phascolarctobacterium root:Engineered:Wastewater 1.0 +genus Phascolarctobacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 +genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Phascolarctobacterium root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Phascolarctobacterium root:Host-associated:Human:Digestive system 4.0 genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 genus Phascolarctobacterium root:Engineered:Lab enrichment:Defined media 1.0 genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Phascolarctobacterium root:Environmental:Aquatic:Freshwater:Lentic 1.0 -genus Phascolarctobacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Phascolarctobacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 +genus Phascolarctobacterium root:Engineered:Wastewater:Water and sludge 1.0 genus Phascolarctobacterium root:Host-associated:Mammals:Gastrointestinal tract 2.0 genus Phascolarctobacterium root:Host-associated:Animal:Digestive system:Fecal 1.0 -genus Phascolarctobacterium root:Host-associated:Mammals:Digestive system:Midgut 1.0 -genus Enterococcus root:Host-associated:Mammals:Digestive system:Fecal 6.0 +genus Enterococcus root:Host-associated:Mammals:Digestive system:Fecal 7.0 genus Enterococcus root:Host-associated:Birds:Digestive system:Fecal 4.0 -genus Enterococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 29.0 +genus Enterococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 30.0 genus Enterococcus root:Environmental:Aquatic:Marine 1.0 genus Enterococcus root:Host-associated:Fish 1.0 genus Enterococcus root:Host-associated:Mammals:Digestive system 2.0 @@ -37141,7 +38178,9 @@ genus Enterococcus root:Engineered:Food production:Dairy products 12.0 genus Enterococcus root:Environmental:Terrestrial:Soil 4.0 genus Enterococcus root:Environmental:Aquatic:Marine:Sediment 2.0 genus Enterococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Enterococcus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Enterococcus root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Enterococcus root:Engineered:Lab enrichment 1.0 genus Enterococcus root:Engineered:Lab Synthesis 1.0 genus Enterococcus root:Host-associated:Birds:Digestive system:Ceca 2.0 genus Enterococcus root:Host-associated:Human:Digestive system 5.0 @@ -37150,7 +38189,7 @@ genus Enterococcus root:Host-associated:Mammals:Digestive system:Large intestine genus Enterococcus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Enterococcus root:Engineered:Lab enrichment:Defined media 1.0 genus Enterococcus root:Engineered:Food production 2.0 -genus Enterococcus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +genus Enterococcus root:Host-associated:Mammals:Digestive system:Large intestine 2.0 genus Enterococcus root:Engineered:Food production:Fermented seafood 1.0 genus Enterococcus root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Enterococcus root:Engineered:Modeled 1.0 @@ -37160,7 +38199,6 @@ genus Enterococcus root:Host-associated:Human:Digestive system:Oral:Supragingiva genus Enterococcus root:Host-associated:Birds:Digestive system:Digestive tube 1.0 genus Enterococcus root:Host-associated:Insecta 2.0 genus Enterococcus root:Host-associated:Birds:Digestive system 3.0 -genus Enterococcus root:Engineered:Lab enrichment 1.0 genus Enterococcus root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Enterococcus root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Enterococcus root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -37197,7 +38235,7 @@ species Parabacteroides uniformis root:Host-associated:Human:Digestive system:La species Parabacteroides uniformis root:Host-associated:Human 1.0 species Parabacteroides uniformis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species [Ruminococcus] gnavus root:Host-associated:Mammals:Digestive system:Fecal 5.0 -species [Ruminococcus] gnavus root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 +species [Ruminococcus] gnavus root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 species [Ruminococcus] gnavus root:Host-associated:Mammals:Digestive system 1.0 species [Ruminococcus] gnavus root:Host-associated:Human 1.0 species [Ruminococcus] gnavus root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -37232,10 +38270,11 @@ class Kiritimatiellae root:Environmental:Aquatic:Marine 6.0 class Kiritimatiellae root:Environmental:Aquatic:Marine:Oceanic 2.0 class Kiritimatiellae root:Host-associated:Mammals:Digestive system 9.0 class Kiritimatiellae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 -class Kiritimatiellae root:Host-associated:Mammals 2.0 +class Kiritimatiellae root:Host-associated:Mammals 3.0 class Kiritimatiellae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 class Kiritimatiellae root:Environmental:Aquatic:Marine:Sediment 10.0 class Kiritimatiellae root:Environmental:Aquatic:Sediment 3.0 +class Kiritimatiellae root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Kiritimatiellae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 class Kiritimatiellae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 class Kiritimatiellae root:Engineered:Lab enrichment:Defined media 1.0 @@ -37247,168 +38286,72 @@ class Kiritimatiellae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Kiritimatiellae root:Host-associated:Mammals:Gastrointestinal tract 2.0 class Kiritimatiellae root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 class Kiritimatiellae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system:Fecal 19.0 -order Enterobacterales root:Host-associated:Birds:Digestive system:Fecal 3.0 -order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine:Fecal 83.0 -order Enterobacterales root:Environmental:Aquatic:Marine 16.0 -order Enterobacterales root:Host-associated:Fish 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic:Sediment 4.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic 2.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system 16.0 -order Enterobacterales root:Environmental:Aquatic:Lentic:Brackish 4.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 -order Enterobacterales root:Host-associated:Human 3.0 -order Enterobacterales root:Host-associated:Plants 10.0 -order Enterobacterales root:Environmental:Aquatic:Estuary:Sediment 1.0 -order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine 5.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Agricultural 1.0 -order Enterobacterales root:Engineered:Bioreactor 6.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 -order Enterobacterales root:Engineered:Wastewater:Activated Sludge 2.0 -order Enterobacterales root:Host-associated:Human:Skin 3.0 -order Enterobacterales root:Mixed 8.0 -order Enterobacterales root:Host-associated:Mammals 6.0 -order Enterobacterales root:Host-associated:Amphibia 2.0 -order Enterobacterales root:Host-associated:Human:Digestive system:Intestine 2.0 -order Enterobacterales root:Engineered:Food production:Fermented beverages 4.0 -order Enterobacterales root:Engineered:Wastewater 2.0 -order Enterobacterales root:Host-associated:Human:Reproductive system:Vagina 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -order Enterobacterales root:Host-associated:Human:Digestive system:Oral 2.0 -order Enterobacterales root:Engineered:Food production:Dairy products 5.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Contaminated 1.0 -order Enterobacterales root:Host-associated:Plants:Phylloplane 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Enterobacterales root:Environmental:Terrestrial:Soil 6.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Sediment 11.0 -order Enterobacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Lotic 1.0 -order Enterobacterales root:Host-associated:Porifera 1.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Wetlands 1.0 -order Enterobacterales root:Engineered:Lab Synthesis 1.0 -order Enterobacterales root:Host-associated:Birds:Digestive system:Ceca 5.0 -order Enterobacterales root:Host-associated:Human:Digestive system 21.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Coastal 5.0 -order Enterobacterales root:Engineered:Solid waste:Composting 3.0 -order Enterobacterales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -order Enterobacterales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -order Enterobacterales root:Engineered:Lab enrichment:Defined media 3.0 -order Enterobacterales root:Host-associated:Plants:Root 2.0 -order Enterobacterales root:Engineered:Food production 4.0 -order Enterobacterales root:Environmental:Terrestrial:Deep subsurface 1.0 -order Enterobacterales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system:Large intestine 7.0 -order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Lentic 2.0 -order Enterobacterales root:Host-associated:Human:Skin:Naris 1.0 -order Enterobacterales root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 -order Enterobacterales root:Host-associated:Animal:Digestive system 3.0 -order Enterobacterales root:Host-associated:Insecta:Digestive system 5.0 -order Enterobacterales root:Host-associated:Fish:Digestive system 1.0 -order Enterobacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 4.0 -order Enterobacterales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Clay 1.0 -order Enterobacterales root:Host-associated:Human:Reproductive system:Female 1.0 -order Enterobacterales root:Engineered:Wastewater:Water and sludge 1.0 -order Enterobacterales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 3.0 -order Enterobacterales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2.0 -order Enterobacterales root:Environmental:Terrestrial 1.0 -order Enterobacterales root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 -order Enterobacterales root:Host-associated:Mammals:Gastrointestinal tract 3.0 -order Enterobacterales root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -order Enterobacterales root:Host-associated:Fish:Digestive system:Intestine 1.0 -order Enterobacterales root:Host-associated:Insecta 6.0 -order Enterobacterales root:Engineered:Built environment 8.0 -order Enterobacterales root:Host-associated:Birds:Digestive system 6.0 -order Enterobacterales root:Engineered:Lab enrichment 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -order Enterobacterales root:Host-associated:Animal:Digestive system:Fecal 2.0 -order Enterobacterales root:Engineered:Food production:Fermented vegetables 4.0 -order Enterobacterales root:Host-associated:Reptile 1.0 -order Enterobacterales root:Host-associated:Mammals:Respiratory system 2.0 -order Enterobacterales root:Host-associated:Birds 5.0 -order Enterobacterales root:Engineered 2.0 -order Enterobacterales root:Host-associated:Mammals:Digestive system:Midgut 1.0 -order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 -order Enterobacterales root:Host-associated:Human:Respiratory system 1.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 -order Enterobacterales root:Host-associated:Mammals:Skin 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 -order Enterobacterales root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 -order Enterobacterales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 -order Enterobacterales root:Host-associated:Mollusca:Digestive system 1.0 -order Enterobacterales root:Host-associated:Human:Circulatory system:Blood 1.0 -order Enterobacterales root:Host-associated:Human:Circulatory system 2.0 -order Enterobacterales root:Host-associated:Cnidaria 1.0 -order Enterobacterales root:Environmental:Terrestrial:Soil:Loam 1.0 -order Enterobacterales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 -order Enterobacterales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 -order Enterobacterales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 order Acidaminococcales root:Host-associated:Mammals:Digestive system:Fecal 32.0 order Acidaminococcales root:Host-associated:Birds:Digestive system:Fecal 5.0 -order Acidaminococcales root:Host-associated:Human:Digestive system:Large intestine:Fecal 63.0 -order Acidaminococcales root:Host-associated:Mammals:Digestive system 11.0 +order Acidaminococcales root:Host-associated:Human:Digestive system:Large intestine:Fecal 69.0 +order Acidaminococcales root:Host-associated:Mammals:Digestive system 13.0 order Acidaminococcales root:Host-associated:Human:Digestive system:Large intestine 8.0 order Acidaminococcales root:Engineered:Bioreactor 2.0 order Acidaminococcales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -order Acidaminococcales root:Host-associated:Mammals 4.0 +order Acidaminococcales root:Mixed 1.0 +order Acidaminococcales root:Host-associated:Mammals 5.0 order Acidaminococcales root:Host-associated:Human:Digestive system:Intestine 3.0 +order Acidaminococcales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Acidaminococcales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 order Acidaminococcales root:Environmental:Aquatic:Sediment 1.0 +order Acidaminococcales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Acidaminococcales root:Engineered:Biogas plant:Wet fermentation 1.0 +order Acidaminococcales root:Engineered:Lab enrichment 1.0 order Acidaminococcales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 order Acidaminococcales root:Host-associated:Birds:Digestive system:Ceca 2.0 order Acidaminococcales root:Host-associated:Human:Digestive system 14.0 -order Acidaminococcales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 -order Acidaminococcales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +order Acidaminococcales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 +order Acidaminococcales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 order Acidaminococcales root:Engineered:Lab enrichment:Defined media 1.0 order Acidaminococcales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Acidaminococcales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 order Acidaminococcales root:Environmental:Aquatic:Freshwater:Lentic 1.0 order Acidaminococcales root:Host-associated:Animal:Digestive system 2.0 -order Acidaminococcales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Acidaminococcales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 order Acidaminococcales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 order Acidaminococcales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Acidaminococcales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 order Acidaminococcales root:Host-associated:Mammals:Gastrointestinal tract 3.0 order Acidaminococcales root:Host-associated:Birds:Digestive system 1.0 -order Acidaminococcales root:Engineered:Lab enrichment 1.0 order Acidaminococcales root:Host-associated:Animal:Digestive system:Fecal 3.0 order Acidaminococcales root:Host-associated:Reptile 1.0 -order Acidaminococcales root:Host-associated:Mammals:Digestive system:Midgut 1.0 -family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Digestive system:Fecal 5.0 +family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Digestive system:Fecal 7.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Digestive system 4.0 -family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system:Oral 1.0 +family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system:Oral 2.0 +family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system 2.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Insecta:Digestive system 1.0 family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 -genus Mogibacterium root:Host-associated:Mammals:Digestive system:Fecal 5.0 +family Clostridiales Family XIII. Incertae Sedis root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +genus Mogibacterium root:Host-associated:Mammals:Digestive system:Fecal 6.0 genus Mogibacterium root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Mogibacterium root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 genus Mogibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Mogibacterium root:Host-associated:Human 1.0 genus Mogibacterium root:Host-associated:Human:Digestive system:Oral 1.0 -genus Mogibacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +genus Mogibacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Mogibacterium root:Host-associated:Human:Digestive system 1.0 genus Mogibacterium root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Mogibacterium root:Engineered:Biogas plant 1.0 +genus Mogibacterium root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Lachnoclostridium root:Host-associated:Mammals:Digestive system:Fecal 10.0 -genus Lachnoclostridium root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 +genus Lachnoclostridium root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 genus Lachnoclostridium root:Host-associated:Mammals:Digestive system 5.0 -genus Lachnoclostridium root:Host-associated:Human:Digestive system:Large intestine 2.0 +genus Lachnoclostridium root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Lachnoclostridium root:Host-associated:Human:Skin 1.0 genus Lachnoclostridium root:Host-associated:Mammals 1.0 +genus Lachnoclostridium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Lachnoclostridium root:Environmental:Aquatic:Sediment 1.0 genus Lachnoclostridium root:Host-associated:Human:Digestive system 4.0 genus Lachnoclostridium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 @@ -37420,11 +38363,13 @@ genus Lachnoclostridium root:Host-associated:Human:Digestive system:Large intest genus Lachnoclostridium root:Host-associated:Birds:Digestive system 1.0 genus Lachnoclostridium root:Host-associated:Animal:Digestive system:Fecal 3.0 genus Lachnoclostridium root:Host-associated:Reptile 1.0 +genus Lachnoclostridium root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Lachnoclostridium root:Host-associated:Human:Circulatory system 1.0 -genus Marvinbryantia root:Host-associated:Mammals:Digestive system:Fecal 12.0 +genus Marvinbryantia root:Host-associated:Mammals:Digestive system:Fecal 13.0 genus Marvinbryantia root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Marvinbryantia root:Host-associated:Mammals:Digestive system 6.0 genus Marvinbryantia root:Host-associated:Mammals 1.0 +genus Marvinbryantia root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Marvinbryantia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 genus Marvinbryantia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Marvinbryantia root:Host-associated:Animal:Digestive system 1.0 @@ -37444,6 +38389,7 @@ species Sedimentibacter hongkongensis root:Mixed 1.0 species Sedimentibacter hongkongensis root:Environmental:Aquatic:Marine:Coastal 1.0 species Sedimentibacter hongkongensis root:Engineered:Wastewater:Water and sludge 1.0 species Streptococcus ferus root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Streptococcus ferus root:Host-associated:Mammals:Digestive system 1.0 species Streptococcus ferus root:Mixed 1.0 species Streptococcus ferus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Anaerostipes sp. 992a root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -37460,11 +38406,13 @@ species Lachnospiraceae bacterium canine oral taxon 099 root:Host-associated:Mam species Fournierella massiliensis root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Fournierella massiliensis root:Host-associated:Birds:Digestive system:Fecal 1.0 species Fournierella massiliensis root:Host-associated:Birds:Digestive system:Ceca 2.0 +species Fournierella massiliensis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Fournierella massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Fournierella massiliensis root:Host-associated:Birds:Digestive system 1.0 species Eubacterium ramulus root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Eubacterium ramulus root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Eubacterium ramulus root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 species Eubacterium ramulus root:Host-associated:Mammals:Digestive system 2.0 +species Eubacterium ramulus root:Host-associated:Human:Digestive system:Large intestine 1.0 species Eubacterium ramulus root:Engineered:Wastewater:Activated Sludge 1.0 species Eubacterium ramulus root:Environmental:Terrestrial:Soil 1.0 species Eubacterium ramulus root:Host-associated:Human:Digestive system 1.0 @@ -37499,10 +38447,11 @@ class Deferribacteres root:Engineered:Bioreactor 1.0 class Deferribacteres root:Host-associated:Mammals 1.0 class Deferribacteres root:Engineered:Food production:Dairy products 1.0 class Deferribacteres root:Environmental:Aquatic:Marine:Sediment 2.0 +class Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +class Deferribacteres root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Deferribacteres root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 16.0 class Deferribacteres root:Host-associated:Mammals:Digestive system:Large intestine 6.0 class Deferribacteres root:Host-associated:Animal:Digestive system 1.0 -class Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Deferribacteres root:Host-associated:Mammals:Gastrointestinal tract 1.0 class Deferribacteres root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Deferribacteres root:Host-associated:Mammals:Respiratory system 3.0 @@ -37510,42 +38459,47 @@ class Deferribacteres root:Host-associated:Birds 1.0 class Deferribacteres root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 5.0 class Deferribacteres root:Host-associated:Mammals:Skin 1.0 class Deferribacteres root:Environmental:Terrestrial:Oil reservoir 1.0 +class Deferribacteres root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Deferribacterales root:Host-associated:Mammals:Digestive system:Fecal 9.0 order Deferribacterales root:Host-associated:Birds:Digestive system:Fecal 3.0 order Deferribacterales root:Host-associated:Mammals:Digestive system 3.0 order Deferribacterales root:Engineered:Bioreactor 1.0 order Deferribacterales root:Host-associated:Mammals 1.0 order Deferribacterales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Deferribacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order Deferribacterales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Deferribacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 15.0 order Deferribacterales root:Host-associated:Mammals:Digestive system:Large intestine 6.0 order Deferribacterales root:Host-associated:Animal:Digestive system 2.0 -order Deferribacterales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Deferribacterales root:Host-associated:Mammals:Gastrointestinal tract 1.0 order Deferribacterales root:Host-associated:Mammals:Respiratory system 3.0 order Deferribacterales root:Host-associated:Birds 1.0 order Deferribacterales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 order Deferribacterales root:Environmental:Terrestrial:Oil reservoir 1.0 +order Deferribacterales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Fecal 9.0 family Oscillospiraceae root:Host-associated:Birds:Digestive system:Fecal 2.0 -family Oscillospiraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 35.0 +family Oscillospiraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 40.0 family Oscillospiraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Oscillospiraceae root:Host-associated:Mammals:Digestive system 6.0 -family Oscillospiraceae root:Host-associated:Human:Digestive system:Large intestine 7.0 +family Oscillospiraceae root:Host-associated:Human:Digestive system:Large intestine 8.0 family Oscillospiraceae root:Engineered:Bioreactor 1.0 family Oscillospiraceae root:Engineered:Wastewater:Activated Sludge 1.0 family Oscillospiraceae root:Host-associated:Human:Skin 1.0 +family Oscillospiraceae root:Mixed 1.0 family Oscillospiraceae root:Host-associated:Mammals 1.0 family Oscillospiraceae root:Host-associated:Human:Digestive system:Intestine 2.0 family Oscillospiraceae root:Engineered:Wastewater 1.0 family Oscillospiraceae root:Environmental:Terrestrial:Soil 1.0 +family Oscillospiraceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Oscillospiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Oscillospiraceae root:Host-associated:Birds:Digestive system:Ceca 2.0 family Oscillospiraceae root:Host-associated:Human:Digestive system 11.0 -family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 +family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 family Oscillospiraceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 5.0 family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family Oscillospiraceae root:Host-associated:Animal:Digestive system 2.0 -family Oscillospiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Oscillospiraceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Oscillospiraceae root:Environmental:Terrestrial 1.0 family Oscillospiraceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 @@ -37556,11 +38510,12 @@ family Oscillospiraceae root:Host-associated:Mammals:Respiratory system 1.0 family Oscillospiraceae root:Host-associated:Birds 1.0 family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 family Oscillospiraceae root:Host-associated:Mammals:Skin 1.0 +family Oscillospiraceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 family Oscillospiraceae root:Host-associated:Human:Circulatory system 1.0 family Odoribacteraceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 -family Odoribacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 +family Odoribacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 family Odoribacteraceae root:Host-associated:Mammals:Digestive system 2.0 -family Odoribacteraceae root:Host-associated:Human:Digestive system:Large intestine 1.0 +family Odoribacteraceae root:Host-associated:Human:Digestive system:Large intestine 2.0 family Odoribacteraceae root:Host-associated:Human:Digestive system 5.0 family Odoribacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 family Odoribacteraceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -37581,21 +38536,24 @@ family Desulfovibrionaceae root:Environmental:Aquatic:Freshwater:Groundwater:Bio family Desulfovibrionaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Desulfovibrionaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Desulfovibrionaceae root:Mixed 1.0 +family Desulfovibrionaceae root:Host-associated:Mammals 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Desulfovibrionaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Desulfovibrionaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Sediment 1.0 +family Desulfovibrionaceae root:Host-associated:Mammals:Digestive system:Midgut 2.0 family Desulfovibrionaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 +family Desulfovibrionaceae root:Engineered:Lab enrichment 3.0 family Desulfovibrionaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +family Desulfovibrionaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Desulfovibrionaceae root:Host-associated:Human:Digestive system 2.0 family Desulfovibrionaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 7.0 family Desulfovibrionaceae root:Engineered:Food production 1.0 family Desulfovibrionaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 -family Desulfovibrionaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Estuary 1.0 family Desulfovibrionaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Desulfovibrionaceae root:Engineered:Modeled 1.0 family Desulfovibrionaceae root:Host-associated:Insecta:Digestive system 1.0 -family Desulfovibrionaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Desulfovibrionaceae root:Host-associated:Fish:Digestive system 1.0 family Desulfovibrionaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Desulfovibrionaceae root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -37604,11 +38562,9 @@ family Desulfovibrionaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Desulfovibrionaceae root:Engineered:Wastewater:Water and sludge 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -family Desulfovibrionaceae root:Engineered:Lab enrichment 3.0 family Desulfovibrionaceae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Desulfovibrionaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Desulfovibrionaceae root:Host-associated:Birds 2.0 -family Desulfovibrionaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Desulfovibrionaceae root:Engineered:Bioremediation 1.0 family Desulfovibrionaceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 family Desulfovibrionaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -37617,6 +38573,7 @@ genus Faecalibaculum root:Host-associated:Mammals:Digestive system:Fecal 3.0 genus Faecalibaculum root:Environmental:Aquatic:Marine 2.0 genus Faecalibaculum root:Host-associated:Mammals:Digestive system 3.0 genus Faecalibaculum root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 +genus Faecalibaculum root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Faecalibaculum root:Environmental:Aquatic:Marine:Coastal 1.0 genus Faecalibaculum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Faecalibaculum root:Host-associated:Mammals:Digestive system:Large intestine 3.0 @@ -37628,10 +38585,10 @@ genus Mucispirillum root:Host-associated:Human:Digestive system:Large intestine: genus Mucispirillum root:Host-associated:Mammals:Digestive system 2.0 genus Mucispirillum root:Host-associated:Mammals 1.0 genus Mucispirillum root:Environmental:Terrestrial:Soil 1.0 -genus Mucispirillum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 +genus Mucispirillum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Mucispirillum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Mucispirillum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 genus Mucispirillum root:Host-associated:Mammals:Digestive system:Large intestine 2.0 -genus Mucispirillum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Mucispirillum root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Mucispirillum root:Host-associated:Mammals:Respiratory system 3.0 genus Mucispirillum root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 @@ -37639,6 +38596,7 @@ species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Digestive sy species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Digestive system 6.0 species Lachnospiraceae bacterium 28-4 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Lachnospiraceae bacterium 28-4 root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 +species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Digestive system:Large intestine 2.0 species Lachnospiraceae bacterium 28-4 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -37647,17 +38605,18 @@ species Mucispirillum schaedleri root:Host-associated:Mammals:Digestive system:F species Mucispirillum schaedleri root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Mucispirillum schaedleri root:Host-associated:Mammals:Digestive system 2.0 species Mucispirillum schaedleri root:Environmental:Terrestrial:Soil 1.0 +species Mucispirillum schaedleri root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Mucispirillum schaedleri root:Host-associated:Birds:Digestive system:Ceca 1.0 +species Mucispirillum schaedleri root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Mucispirillum schaedleri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Mucispirillum schaedleri root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Mucispirillum schaedleri root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Mucispirillum schaedleri root:Host-associated:Mammals:Digestive system:Large intestine 2.0 -species Mucispirillum schaedleri root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Mucispirillum schaedleri root:Host-associated:Mammals:Respiratory system 4.0 species Mucispirillum schaedleri root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 species Lactobacillus reuteri root:Host-associated:Mammals:Digestive system:Fecal 8.0 species Lactobacillus reuteri root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Lactobacillus reuteri root:Host-associated:Mammals:Digestive system 3.0 +species Lactobacillus reuteri root:Mixed 1.0 species Lactobacillus reuteri root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Lactobacillus reuteri root:Engineered:Biogas plant:Wet fermentation 1.0 species Lactobacillus reuteri root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -37676,11 +38635,11 @@ species Romboutsia ilealis root:Host-associated:Mammals:Digestive system:Fecal 1 species Romboutsia ilealis root:Engineered:Bioreactor 1.0 species Romboutsia ilealis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Romboutsia ilealis root:Host-associated:Mammals:Respiratory system 1.0 -species Escherichia coli root:Host-associated:Mammals:Digestive system:Fecal 6.0 +species Escherichia coli root:Host-associated:Mammals:Digestive system:Fecal 7.0 species Escherichia coli root:Host-associated:Birds:Digestive system:Fecal 1.0 -species Escherichia coli root:Host-associated:Human:Digestive system:Large intestine:Fecal 47.0 +species Escherichia coli root:Host-associated:Human:Digestive system:Large intestine:Fecal 48.0 species Escherichia coli root:Environmental:Aquatic:Marine 4.0 -species Escherichia coli root:Host-associated:Mammals:Digestive system 4.0 +species Escherichia coli root:Host-associated:Mammals:Digestive system 5.0 species Escherichia coli root:Environmental:Aquatic:Lentic:Brackish 2.0 species Escherichia coli root:Host-associated:Human 2.0 species Escherichia coli root:Host-associated:Human:Digestive system:Large intestine 5.0 @@ -37694,7 +38653,9 @@ species Escherichia coli root:Engineered:Food production:Dairy products 1.0 species Escherichia coli root:Environmental:Terrestrial:Soil 1.0 species Escherichia coli root:Environmental:Aquatic:Marine:Sediment 2.0 species Escherichia coli root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Escherichia coli root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Escherichia coli root:Environmental:Aquatic:Freshwater:Lotic 1.0 +species Escherichia coli root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Escherichia coli root:Host-associated:Birds:Digestive system:Ceca 1.0 species Escherichia coli root:Host-associated:Human:Digestive system 10.0 species Escherichia coli root:Host-associated:Arthropoda:Digestive system:Gut 1.0 @@ -37705,17 +38666,16 @@ species Escherichia coli root:Engineered:Modeled:Simulated communities (sequence species Escherichia coli root:Host-associated:Animal:Digestive system 1.0 species Escherichia coli root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Escherichia coli root:Engineered:Wastewater:Water and sludge 1.0 +species Escherichia coli root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 species Escherichia coli root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Escherichia coli root:Environmental:Terrestrial 1.0 species Escherichia coli root:Host-associated:Mammals:Gastrointestinal tract 1.0 -species Escherichia coli root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 species Escherichia coli root:Engineered:Built environment 2.0 species Escherichia coli root:Host-associated:Birds:Digestive system 1.0 species Escherichia coli root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Escherichia coli root:Host-associated:Birds 1.0 -species Escherichia coli root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides vulgatus root:Host-associated:Mammals:Digestive system:Fecal 5.0 -species Bacteroides vulgatus root:Host-associated:Human:Digestive system:Large intestine:Fecal 17.0 +species Bacteroides vulgatus root:Host-associated:Human:Digestive system:Large intestine:Fecal 19.0 species Bacteroides vulgatus root:Host-associated:Human 1.0 species Bacteroides vulgatus root:Host-associated:Human:Digestive system:Large intestine 2.0 species Bacteroides vulgatus root:Engineered:Bioreactor 1.0 @@ -37724,18 +38684,18 @@ species Bacteroides vulgatus root:Host-associated:Human:Digestive system 5.0 species Bacteroides vulgatus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bacteroides vulgatus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Bacteroides vulgatus root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -class Fibrobacteria root:Host-associated:Mammals:Digestive system:Fecal 18.0 +class Fibrobacteria root:Host-associated:Mammals:Digestive system:Fecal 19.0 class Fibrobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 class Fibrobacteria root:Environmental:Aquatic:Marine 2.0 class Fibrobacteria root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -class Fibrobacteria root:Host-associated:Mammals:Digestive system 10.0 +class Fibrobacteria root:Host-associated:Mammals:Digestive system 12.0 class Fibrobacteria root:Engineered:Bioreactor 2.0 class Fibrobacteria root:Host-associated:Mammals 1.0 class Fibrobacteria root:Environmental:Terrestrial:Soil 1.0 class Fibrobacteria root:Host-associated:Porifera 1.0 -class Fibrobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 21.0 +class Fibrobacteria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 22.0 class Fibrobacteria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 -class Fibrobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +class Fibrobacteria root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 class Fibrobacteria root:Engineered:Lab enrichment:Defined media 1.0 class Fibrobacteria root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 class Fibrobacteria root:Host-associated:Mammals:Digestive system:Large intestine 3.0 @@ -37746,53 +38706,57 @@ class Fibrobacteria root:Engineered:Wastewater:Water and sludge 1.0 class Fibrobacteria root:Host-associated:Mammals:Gastrointestinal tract 3.0 class Fibrobacteria root:Host-associated:Birds:Digestive system 1.0 class Fibrobacteria root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Fecal 16.0 +class Fibrobacteria root:Host-associated:Mammals:Digestive system:Foregut 1.0 +family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Fecal 17.0 family Fibrobacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 family Fibrobacteraceae root:Environmental:Aquatic:Marine 1.0 family Fibrobacteraceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Fibrobacteraceae root:Host-associated:Mammals:Digestive system 7.0 +family Fibrobacteraceae root:Host-associated:Mammals:Digestive system 8.0 family Fibrobacteraceae root:Engineered:Bioreactor 1.0 family Fibrobacteraceae root:Host-associated:Mammals 1.0 family Fibrobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 family Fibrobacteraceae root:Environmental:Aquatic:Sediment 1.0 -family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 21.0 +family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 22.0 family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 -family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 family Fibrobacteraceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Fibrobacteraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Fibrobacteraceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 family Fibrobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Fecal 16.0 family Acidaminococcaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 -family Acidaminococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 -family Acidaminococcaceae root:Host-associated:Mammals:Digestive system 8.0 +family Acidaminococcaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 +family Acidaminococcaceae root:Host-associated:Mammals:Digestive system 10.0 family Acidaminococcaceae root:Host-associated:Human:Digestive system:Large intestine 4.0 family Acidaminococcaceae root:Engineered:Bioreactor 2.0 family Acidaminococcaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -family Acidaminococcaceae root:Host-associated:Mammals 3.0 +family Acidaminococcaceae root:Mixed 1.0 +family Acidaminococcaceae root:Host-associated:Mammals 4.0 family Acidaminococcaceae root:Host-associated:Human:Digestive system:Intestine 1.0 +family Acidaminococcaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Acidaminococcaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Acidaminococcaceae root:Engineered:Lab enrichment 1.0 family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 family Acidaminococcaceae root:Host-associated:Human:Digestive system 3.0 family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 family Acidaminococcaceae root:Engineered:Lab enrichment:Defined media 1.0 family Acidaminococcaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Acidaminococcaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 family Acidaminococcaceae root:Host-associated:Animal:Digestive system 1.0 +family Acidaminococcaceae root:Engineered:Wastewater:Water and sludge 1.0 family Acidaminococcaceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 -family Acidaminococcaceae root:Engineered:Lab enrichment 1.0 -family Acidaminococcaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 -genus Fibrobacter root:Host-associated:Mammals:Digestive system:Fecal 19.0 +genus Fibrobacter root:Host-associated:Mammals:Digestive system:Fecal 20.0 genus Fibrobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -genus Fibrobacter root:Host-associated:Mammals:Digestive system 9.0 +genus Fibrobacter root:Host-associated:Mammals:Digestive system 11.0 genus Fibrobacter root:Engineered:Bioreactor 1.0 genus Fibrobacter root:Host-associated:Mammals 1.0 genus Fibrobacter root:Environmental:Terrestrial:Soil 2.0 -genus Fibrobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 18.0 +genus Fibrobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 19.0 genus Fibrobacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 -genus Fibrobacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +genus Fibrobacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 genus Fibrobacter root:Engineered:Lab enrichment:Defined media 1.0 genus Fibrobacter root:Host-associated:Mammals:Digestive system:Large intestine 3.0 genus Fibrobacter root:Host-associated 1.0 @@ -37800,7 +38764,7 @@ genus Fibrobacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine genus Fibrobacter root:Host-associated:Mammals:Gastrointestinal tract 3.0 genus Fibrobacter root:Environmental:Terrestrial:Volcanic 1.0 genus Methanocorpusculum root:Host-associated:Mammals:Digestive system:Fecal 9.0 -genus Methanocorpusculum root:Host-associated:Mammals:Digestive system 3.0 +genus Methanocorpusculum root:Host-associated:Mammals:Digestive system 4.0 genus Methanocorpusculum root:Engineered:Bioreactor 1.0 genus Methanocorpusculum root:Mixed 1.0 genus Methanocorpusculum root:Host-associated:Mammals 2.0 @@ -37817,7 +38781,7 @@ genus Methanocorpusculum root:Host-associated:Mammals:Gastrointestinal tract:Int genus Methanocorpusculum root:Engineered:Solid waste:Landfill 1.0 genus Methanocorpusculum root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Methanocorpusculum root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 -genus Agathobacter root:Host-associated:Mammals:Digestive system:Fecal 3.0 +genus Agathobacter root:Host-associated:Mammals:Digestive system:Fecal 4.0 genus Agathobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 genus Agathobacter root:Host-associated:Mammals:Digestive system 1.0 genus Agathobacter root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -37825,11 +38789,11 @@ genus Agathobacter root:Host-associated:Human:Digestive system 1.0 genus Agathobacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 genus Agathobacter root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Agathobacter root:Host-associated:Birds:Digestive system 1.0 -genus Alloprevotella root:Host-associated:Mammals:Digestive system:Fecal 25.0 -genus Alloprevotella root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 +genus Alloprevotella root:Host-associated:Mammals:Digestive system:Fecal 26.0 +genus Alloprevotella root:Host-associated:Human:Digestive system:Oral:Saliva 6.0 genus Alloprevotella root:Host-associated:Birds:Digestive system:Fecal 2.0 genus Alloprevotella root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -genus Alloprevotella root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +genus Alloprevotella root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 genus Alloprevotella root:Environmental:Aquatic:Marine 1.0 genus Alloprevotella root:Host-associated:Mammals:Digestive system 10.0 genus Alloprevotella root:Host-associated:Human 1.0 @@ -37837,6 +38801,8 @@ genus Alloprevotella root:Host-associated:Mammals 2.0 genus Alloprevotella root:Host-associated:Human:Digestive system:Oral 4.0 genus Alloprevotella root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Alloprevotella root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Alloprevotella root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Alloprevotella root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Alloprevotella root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Alloprevotella root:Host-associated:Human:Digestive system 4.0 genus Alloprevotella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 @@ -37851,7 +38817,7 @@ genus Alloprevotella root:Host-associated:Human:Digestive system:Oral:buccal muc genus Alloprevotella root:Host-associated:Human:Respiratory system 2.0 species Fibrobacter sp. root:Host-associated:Mammals:Digestive system:Fecal 15.0 species Fibrobacter sp. root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Fibrobacter sp. root:Host-associated:Mammals:Digestive system 7.0 +species Fibrobacter sp. root:Host-associated:Mammals:Digestive system 8.0 species Fibrobacter sp. root:Host-associated:Mammals 1.0 species Fibrobacter sp. root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Fibrobacter sp. root:Engineered:Lab enrichment:Defined media 1.0 @@ -37866,19 +38832,20 @@ species Treponema saccharophilum root:Host-associated:Mammals:Digestive system:L species Treponema saccharophilum root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Treponema saccharophilum root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Treponema saccharophilum root:Host-associated:Mammals:Gastrointestinal tract 2.0 -species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Fecal 8.0 +species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Fecal 9.0 species Ruminococcus flavefaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system 5.0 species Ruminococcus flavefaciens root:Engineered:Wastewater:Activated Sludge 2.0 species Ruminococcus flavefaciens root:Host-associated:Mammals 1.0 -species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Stomach:Rumen 12.0 +species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 +species Ruminococcus flavefaciens root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -species Ruminococcus flavefaciens root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Ruminococcus flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Ruminococcus flavefaciens root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Candidatus Gastranaerophilales bacterium Zag 111 root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Candidatus Gastranaerophilales bacterium Zag 111 root:Host-associated:Mammals:Digestive system 4.0 +species Candidatus Gastranaerophilales bacterium Zag 111 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Candidatus Gastranaerophilales bacterium Zag 111 root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Butyrivibrio sp. oral clone DA074 root:Host-associated:Mammals:Digestive system:Fecal 5.0 species Butyrivibrio sp. oral clone DA074 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -37890,7 +38857,7 @@ species Butyrivibrio sp. oral clone DA074 root:Host-associated:Mammals:Gastroint species Butyrivibrio sp. oral clone DA074 root:Host-associated:Mammals:Gastrointestinal tract 3.0 species Ruminococcus sp. YE58 root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Ruminococcus sp. YE58 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Ruminococcus sp. YE58 root:Host-associated:Mammals:Digestive system 5.0 +species Ruminococcus sp. YE58 root:Host-associated:Mammals:Digestive system 6.0 species Ruminococcus sp. YE58 root:Host-associated:Mammals 1.0 species Ruminococcus sp. YE58 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Ruminococcus sp. YE58 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -37928,8 +38895,10 @@ order Synergistales root:Host-associated:Human:Digestive system:Oral 5.0 order Synergistales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Synergistales root:Environmental:Aquatic:Marine:Sediment 4.0 order Synergistales root:Environmental:Aquatic 1.0 +order Synergistales root:Host-associated:Mammals:Digestive system:Midgut 2.0 order Synergistales root:Engineered:Biogas plant:Wet fermentation 8.0 -order Synergistales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 +order Synergistales root:Engineered:Lab enrichment 1.0 +order Synergistales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 order Synergistales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 order Synergistales root:Host-associated:Birds:Digestive system:Ceca 2.0 order Synergistales root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 @@ -37941,12 +38910,13 @@ order Synergistales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Synergistales root:Engineered:Lab enrichment:Defined media 1.0 order Synergistales root:Environmental:Terrestrial:Deep subsurface 1.0 order Synergistales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 +order Synergistales root:Engineered:Food production:Fermented seafood 1.0 order Synergistales root:Engineered:Wastewater:Industrial wastewater 1.0 order Synergistales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order Synergistales root:Engineered:Bioreactor:Continuous culture 4.0 order Synergistales root:Engineered:Wastewater:Water and sludge 4.0 +order Synergistales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Synergistales root:Host-associated:Insecta 1.0 -order Synergistales root:Engineered:Lab enrichment 1.0 order Synergistales root:Engineered:Biogas plant 5.0 order Synergistales root:Host-associated:Birds 1.0 order Synergistales root:Engineered 1.0 @@ -37954,14 +38924,14 @@ order Synergistales root:Engineered:Biotransformation:Mixed alcohol bioreactor 2 order Synergistales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order Synergistales root:Engineered:Solid waste:Solid animal waste 1.0 order Synergistales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 -order Veillonellales root:Host-associated:Mammals:Digestive system:Fecal 12.0 -order Veillonellales root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 +order Veillonellales root:Host-associated:Mammals:Digestive system:Fecal 13.0 +order Veillonellales root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 order Veillonellales root:Host-associated:Birds:Digestive system:Fecal 2.0 -order Veillonellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 106.0 +order Veillonellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 115.0 order Veillonellales root:Environmental:Aquatic:Marine 1.0 -order Veillonellales root:Host-associated:Mammals:Digestive system 8.0 -order Veillonellales root:Host-associated:Human 10.0 -order Veillonellales root:Host-associated:Human:Digestive system:Large intestine 10.0 +order Veillonellales root:Host-associated:Mammals:Digestive system 9.0 +order Veillonellales root:Host-associated:Human 11.0 +order Veillonellales root:Host-associated:Human:Digestive system:Large intestine 11.0 order Veillonellales root:Engineered:Bioreactor 1.0 order Veillonellales root:Engineered:Wastewater:Activated Sludge 1.0 order Veillonellales root:Host-associated:Human:Skin 5.0 @@ -37974,48 +38944,50 @@ order Veillonellales root:Host-associated:Human:Reproductive system:Vagina 9.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral 56.0 order Veillonellales root:Environmental:Terrestrial:Soil 2.0 order Veillonellales root:Environmental:Aquatic:Marine:Sediment 3.0 -order Veillonellales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Veillonellales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +order Veillonellales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 +order Veillonellales root:Engineered:Lab enrichment 1.0 order Veillonellales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 2.0 order Veillonellales root:Host-associated:Human:Digestive system 27.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 order Veillonellales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 5.0 -order Veillonellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 +order Veillonellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 12.0 order Veillonellales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Veillonellales root:Host-associated:Mammals:Digestive system:Large intestine 1.0 order Veillonellales root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 order Veillonellales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 order Veillonellales root:Host-associated 1.0 -order Veillonellales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Veillonellales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 6.0 order Veillonellales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 order Veillonellales root:Host-associated:Human:Reproductive system:Female 1.0 order Veillonellales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order Veillonellales root:Engineered:Wastewater:Water and sludge 1.0 +order Veillonellales root:Engineered:Wastewater:Water and sludge 2.0 order Veillonellales root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 4.0 order Veillonellales root:Environmental:Terrestrial 1.0 order Veillonellales root:Host-associated:Mammals:Gastrointestinal tract 1.0 order Veillonellales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Veillonellales root:Engineered:Built environment 1.0 -order Veillonellales root:Engineered:Lab enrichment 1.0 order Veillonellales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Veillonellales root:Engineered:Food production:Fermented vegetables 1.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 order Veillonellales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Veillonellales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 order Veillonellales root:Host-associated:Human:Respiratory system 4.0 +order Veillonellales root:Host-associated:Arthropoda:Digestive system:Oral 1.0 order Veillonellales root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 order Veillonellales root:Host-associated:Human:Circulatory system:Blood 1.0 order Veillonellales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 -genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Fecal 8.0 +genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Fecal 9.0 genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system 2.0 genus Candidatus Saccharimonas root:Mixed 1.0 +genus Candidatus Saccharimonas root:Host-associated:Mammals 1.0 genus Candidatus Saccharimonas root:Host-associated:Plants:Rhizosphere 1.0 -genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 -genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Candidatus Saccharimonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Candidatus Saccharimonas root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Candidatus Saccharimonas root:Host-associated:Animal:Digestive system 1.0 genus Candidatus Saccharimonas root:Engineered:Wastewater:Water and sludge 1.0 @@ -38023,16 +38995,18 @@ genus Chlamydia root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Chlamydia root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Chlamydia root:Host-associated:Mammals:Respiratory system 1.0 genus Chlamydia root:Engineered 1.0 -genus Oribacterium root:Host-associated:Mammals:Digestive system:Fecal 9.0 +genus Oribacterium root:Host-associated:Mammals:Digestive system:Fecal 10.0 genus Oribacterium root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Oribacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Oribacterium root:Host-associated:Mammals:Digestive system 2.0 +genus Oribacterium root:Host-associated:Mammals 1.0 genus Oribacterium root:Host-associated:Human:Digestive system:Oral 1.0 -genus Oribacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +genus Oribacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Oribacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Oribacterium root:Engineered:Lab enrichment:Defined media 1.0 +genus Oribacterium root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Candidatus Soleaferrea root:Host-associated:Mammals:Digestive system:Fecal 5.0 -genus Candidatus Soleaferrea root:Host-associated:Mammals:Digestive system 1.0 +genus Candidatus Soleaferrea root:Host-associated:Mammals:Digestive system 2.0 genus Candidatus Soleaferrea root:Host-associated:Mammals 1.0 species Oscillibacter sp. Marseille-P3260 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Oscillibacter sp. Marseille-P3260 root:Host-associated:Birds:Digestive system:Fecal 1.0 @@ -38044,6 +39018,7 @@ species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Digestive sy species Lachnospiraceae bacterium TWA4 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Digestive system 4.0 species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals 1.0 +species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Lachnospiraceae bacterium TWA4 root:Host-associated:Mammals:Gastrointestinal tract 1.0 @@ -38051,16 +39026,17 @@ species Lachnospiraceae bacterium canine oral taxon 037 root:Host-associated:Mam species Lachnospiraceae bacterium canine oral taxon 037 root:Host-associated:Mammals:Digestive system 1.0 species Lachnospiraceae bacterium G11 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lachnospiraceae bacterium G11 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Ruminococcus root:Host-associated:Mammals:Digestive system:Fecal 12.0 +genus Ruminococcus root:Host-associated:Mammals:Digestive system:Fecal 13.0 genus Ruminococcus root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Ruminococcus root:Host-associated:Birds:Digestive system:Fecal 1.0 -genus Ruminococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 86.0 +genus Ruminococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 93.0 genus Ruminococcus root:Host-associated:Mammals:Digestive system 5.0 genus Ruminococcus root:Host-associated:Human 3.0 genus Ruminococcus root:Host-associated:Plants 1.0 -genus Ruminococcus root:Host-associated:Human:Digestive system:Large intestine 8.0 +genus Ruminococcus root:Host-associated:Human:Digestive system:Large intestine 9.0 genus Ruminococcus root:Engineered:Bioreactor 4.0 genus Ruminococcus root:Engineered:Wastewater:Activated Sludge 19.0 +genus Ruminococcus root:Mixed 2.0 genus Ruminococcus root:Host-associated:Mammals 1.0 genus Ruminococcus root:Host-associated:Human:Digestive system:Intestine 2.0 genus Ruminococcus root:Engineered:Food production:Fermented beverages 1.0 @@ -38068,18 +39044,19 @@ genus Ruminococcus root:Engineered:Wastewater 4.0 genus Ruminococcus root:Engineered:Food production:Dairy products 1.0 genus Ruminococcus root:Host-associated:Plants:Phylloplane 1.0 genus Ruminococcus root:Environmental:Terrestrial:Soil 4.0 -genus Ruminococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 12.0 +genus Ruminococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Ruminococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 genus Ruminococcus root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Ruminococcus root:Host-associated:Birds:Digestive system:Ceca 3.0 +genus Ruminococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Ruminococcus root:Host-associated:Human:Digestive system 16.0 genus Ruminococcus root:Environmental:Aquatic:Freshwater 1.0 genus Ruminococcus root:Engineered:Solid waste:Composting 1.0 -genus Ruminococcus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 -genus Ruminococcus root:Host-associated:Mammals:Digestive system:Foregut:Rumen 5.0 +genus Ruminococcus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 +genus Ruminococcus root:Host-associated:Mammals:Digestive system:Foregut:Rumen 6.0 genus Ruminococcus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Ruminococcus root:Engineered:Food production 1.0 genus Ruminococcus root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -genus Ruminococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Ruminococcus root:Host-associated:Mammals:Digestive system:Large intestine 3.0 genus Ruminococcus root:Host-associated:Animal:Digestive system 2.0 genus Ruminococcus root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -38099,15 +39076,15 @@ genus Ruminococcus root:Engineered:Solid waste:Solid animal waste 1.0 genus Papillibacter root:Host-associated:Mammals:Digestive system:Fecal 7.0 genus Papillibacter root:Host-associated:Mammals:Digestive system 1.0 genus Papillibacter root:Engineered:Bioreactor 1.0 -species Fibrobacter sp. UWEL root:Host-associated:Mammals:Digestive system:Fecal 7.0 +species Fibrobacter sp. UWEL root:Host-associated:Mammals:Digestive system:Fecal 8.0 species Fibrobacter sp. UWEL root:Host-associated:Mammals:Digestive system 1.0 -species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system:Fecal 9.0 +species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system:Fecal 10.0 species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system 2.0 species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Ruminococcus sp. HUN007 root:Host-associated:Mammals:Gastrointestinal tract 1.0 -species Candidatus Treponema suis root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Candidatus Treponema suis root:Host-associated:Mammals:Digestive system:Fecal 3.0 species Candidatus Treponema suis root:Host-associated:Mammals:Digestive system 1.0 species Candidatus Treponema suis root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Candidatus Treponema suis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 @@ -38117,14 +39094,14 @@ species Prevotella sp. oral clone FW035 root:Host-associated:Mammals:Digestive s species Prevotella sp. oral clone FW035 root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Prevotella sp. oral clone FW035 root:Host-associated:Human:Digestive system:Oral 1.0 species Prevotella sp. oral clone FW035 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -species Lactobacillus hayakitensis root:Host-associated:Mammals:Digestive system:Fecal 5.0 +species Lactobacillus hayakitensis root:Host-associated:Mammals:Digestive system:Fecal 6.0 species Lactobacillus hayakitensis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Lactobacillus hayakitensis root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Clostridium baratii root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Clostridium baratii root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Clostridium baratii root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Alistipes sp. RSAA-2 root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Lactobacillus equi root:Host-associated:Mammals:Digestive system:Fecal 4.0 +species Lactobacillus equi root:Host-associated:Mammals:Digestive system:Fecal 5.0 species Lactobacillus equi root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Eubacterium root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Eubacterium root:Host-associated:Mammals:Digestive system 2.0 @@ -38134,10 +39111,13 @@ genus Eubacterium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1. genus Eubacterium root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Digestive system:Fecal 3.0 species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Digestive system 1.0 +species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Lachnospiraceae bacterium A4 root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Lactobacillus johnsonii root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Lactobacillus johnsonii root:Host-associated:Birds:Digestive system:Fecal 1.0 +species Lactobacillus johnsonii root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Lactobacillus johnsonii root:Host-associated:Birds:Digestive system:Ceca 1.0 species Lactobacillus johnsonii root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus johnsonii root:Host-associated:Mammals:Digestive system:Large intestine 1.0 @@ -38162,6 +39142,7 @@ class Lentisphaeria root:Host-associated:Mammals:Digestive system:Fecal 4.0 class Lentisphaeria root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 class Lentisphaeria root:Environmental:Aquatic:Marine 1.0 class Lentisphaeria root:Environmental:Aquatic:Marine:Oceanic 3.0 +class Lentisphaeria root:Host-associated:Mammals:Digestive system 1.0 class Lentisphaeria root:Engineered:Bioreactor 1.0 class Lentisphaeria root:Engineered:Wastewater:Activated Sludge 1.0 class Lentisphaeria root:Mixed 1.0 @@ -38177,7 +39158,7 @@ class Lentisphaeria root:Host-associated:Invertebrates:Cnidaria 1.0 order Victivallales root:Host-associated:Mammals:Digestive system:Fecal 5.0 order Victivallales root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 order Victivallales root:Environmental:Aquatic:Marine 2.0 -order Victivallales root:Host-associated:Mammals:Digestive system 1.0 +order Victivallales root:Host-associated:Mammals:Digestive system 2.0 order Victivallales root:Host-associated:Mammals 1.0 order Victivallales root:Environmental:Aquatic:Marine:Sediment 1.0 order Victivallales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 @@ -38186,21 +39167,26 @@ family Victivallaceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 family Victivallaceae root:Environmental:Aquatic:Marine 2.0 family Victivallaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Mailhella root:Host-associated:Mammals:Digestive system:Fecal 2.0 -genus Mailhella root:Host-associated:Mammals 1.0 +genus Mailhella root:Host-associated:Mammals:Digestive system 1.0 +genus Mailhella root:Host-associated:Mammals 2.0 genus Elusimicrobium root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Elusimicrobium root:Host-associated:Mammals 1.0 species bacterium V9D2013 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species bacterium V9D2013 root:Host-associated:Mammals:Digestive system 1.0 species bacterium V9D2013 root:Engineered:Lab enrichment:Defined media 1.0 species bacterium V9D2013 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Akkermansia glycaniphila root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Akkermansia glycaniphila root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Akkermansia glycaniphila root:Host-associated:Mammals:Digestive system 1.0 species Akkermansia glycaniphila root:Host-associated:Mammals 1.0 species Firmicutes bacterium ZOR0006 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Firmicutes bacterium ZOR0006 root:Host-associated:Mammals 1.0 species Mailhella massiliensis root:Host-associated:Mammals:Digestive system:Fecal 7.0 species Mailhella massiliensis root:Host-associated:Birds:Digestive system:Fecal 2.0 species Mailhella massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +species Mailhella massiliensis root:Mixed 1.0 species Mailhella massiliensis root:Host-associated:Mammals 1.0 +species Mailhella massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Mailhella massiliensis root:Host-associated:Birds:Digestive system:Ceca 1.0 species Mailhella massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Mailhella massiliensis root:Host-associated:Birds:Digestive system 1.0 @@ -38223,9 +39209,11 @@ order Streptophyta root:Environmental:Terrestrial:Soil 9.0 order Streptophyta root:Environmental:Aquatic:Marine:Sediment 1.0 order Streptophyta root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 order Streptophyta root:Environmental:Aquatic:Freshwater:Lotic 1.0 +order Streptophyta root:Engineered:Lab enrichment 3.0 order Streptophyta root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Streptophyta root:Environmental:Terrestrial:Soil:Wetlands 1.0 order Streptophyta root:Host-associated:Birds:Digestive system:Ceca 1.0 +order Streptophyta root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Streptophyta root:Host-associated:Human:Digestive system 1.0 order Streptophyta root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 order Streptophyta root:Environmental:Terrestrial:Soil:Desert 2.0 @@ -38233,9 +39221,8 @@ order Streptophyta root:Host-associated:Mammals:Digestive system:Large intestine order Streptophyta root:Host-associated:Arthropoda:Digestive system:Gut 2.0 order Streptophyta root:Host-associated:Plants:Root 3.0 order Streptophyta root:Engineered:Food production 6.0 -order Streptophyta root:Host-associated:Plants:Rhizosphere:Soil 3.0 order Streptophyta root:Host-associated:Mammals:Digestive system:Large intestine 2.0 -order Streptophyta root:Host-associated:Insecta:Digestive system 1.0 +order Streptophyta root:Host-associated:Insecta:Digestive system 2.0 order Streptophyta root:Host-associated 4.0 order Streptophyta root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 order Streptophyta root:Host-associated:Fish:Digestive system:Foregut 1.0 @@ -38243,7 +39230,6 @@ order Streptophyta root:Host-associated:Birds:Digestive system:Digestive tube 1. order Streptophyta root:Environmental:Aquatic:Freshwater:Ice 2.0 order Streptophyta root:Host-associated:Insecta 2.0 order Streptophyta root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -order Streptophyta root:Engineered:Lab enrichment 3.0 order Streptophyta root:Engineered:Food production:Fermented vegetables 6.0 order Streptophyta root:Engineered 1.0 order Streptophyta root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -38253,9 +39239,9 @@ order Streptophyta root:Host-associated:Algae:Brown Algae 1.0 order Streptophyta root:Environmental:Terrestrial:Agricultural field 1.0 genus Thiohalocapsa root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Thiohalocapsa root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -genus Thiohalocapsa root:Environmental:Aquatic:Marine 2.0 +genus Thiohalocapsa root:Environmental:Aquatic:Marine 3.0 genus Thiohalocapsa root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -genus Thiohalocapsa root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +genus Thiohalocapsa root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 genus Thiohalocapsa root:Environmental:Aquatic:Sediment 1.0 genus Thiohalocapsa root:Host-associated:Human:Digestive system 1.0 genus Thiohalocapsa root:Engineered:Bioreactor:Continuous culture 1.0 @@ -38294,6 +39280,7 @@ genus Erwinia root:Engineered:Wastewater:Activated Sludge 1.0 genus Erwinia root:Host-associated:Plants:Phylloplane 2.0 genus Erwinia root:Environmental:Terrestrial:Soil 5.0 genus Erwinia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Erwinia root:Engineered:Lab enrichment 2.0 genus Erwinia root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Erwinia root:Host-associated:Human:Digestive system 1.0 genus Erwinia root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -38302,14 +39289,13 @@ genus Erwinia root:Engineered:Wastewater:Industrial wastewater 1.0 genus Erwinia root:Host-associated:Insecta:Digestive system 1.0 genus Erwinia root:Host-associated:Insecta 2.0 genus Erwinia root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -genus Erwinia root:Engineered:Lab enrichment 2.0 genus Erwinia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 genus Erwinia root:Engineered:Food production:Fermented vegetables 1.0 genus Erwinia root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 genus Erwinia root:Host-associated:Human:Circulatory system:Blood 1.0 genus Coprococcus root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Coprococcus root:Host-associated:Birds:Digestive system:Fecal 2.0 -genus Coprococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 +genus Coprococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 genus Coprococcus root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Coprococcus root:Environmental:Terrestrial:Soil 2.0 genus Coprococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 @@ -38340,15 +39326,15 @@ species Lutispora subterminale root:Host-associated:Mammals:Digestive system:Fec species Lutispora subterminale root:Engineered:Wastewater 1.0 species Lutispora subterminale root:Host-associated:Insecta 1.0 species Bacteroides fragilis root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Bacteroides fragilis root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +species Bacteroides fragilis root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 species Bacteroides fragilis root:Host-associated:Mammals:Digestive system 1.0 species Bacteroides fragilis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Bacteroides fragilis root:Host-associated:Human:Digestive system:Oral 1.0 +species Bacteroides fragilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacteroides fragilis root:Host-associated:Human:Digestive system 3.0 species Bacteroides fragilis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 species Bacteroides fragilis root:Engineered:Food production 1.0 species Bacteroides fragilis root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Bacteroides fragilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacteroides fragilis root:Environmental:Aquatic:Freshwater:Lentic 1.0 species Bacteroides fragilis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Bacteroides fragilis root:Engineered:Wastewater:Water and sludge 1.0 @@ -38392,9 +39378,9 @@ species Enterococcus melis root:Host-associated:Reptile 1.0 species Enterococcus melis root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Enterococcus melis root:Engineered 1.0 species Enterococcus melis root:Host-associated:Birds:Respiratory system 1.0 -family Sutterellaceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 +family Sutterellaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 family Sutterellaceae root:Host-associated:Birds:Digestive system:Fecal 1.0 -family Sutterellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 34.0 +family Sutterellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 35.0 family Sutterellaceae root:Host-associated:Mammals:Digestive system 1.0 family Sutterellaceae root:Host-associated:Human:Digestive system:Large intestine 3.0 family Sutterellaceae root:Engineered:Wastewater:Activated Sludge 1.0 @@ -38434,17 +39420,19 @@ family Synergistaceae root:Engineered:Lab enrichment:Defined media 1.0 family Synergistaceae root:Environmental:Terrestrial:Deep subsurface 1.0 family Synergistaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Synergistaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 +family Synergistaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Synergistaceae root:Host-associated:Birds 1.0 family Synergistaceae root:Engineered 1.0 genus Subdoligranulum root:Host-associated:Mammals:Digestive system:Fecal 5.0 genus Subdoligranulum root:Host-associated:Birds:Digestive system:Fecal 4.0 -genus Subdoligranulum root:Host-associated:Human:Digestive system:Large intestine:Fecal 31.0 +genus Subdoligranulum root:Host-associated:Human:Digestive system:Large intestine:Fecal 34.0 genus Subdoligranulum root:Host-associated:Mammals:Digestive system 1.0 genus Subdoligranulum root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Subdoligranulum root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Subdoligranulum root:Host-associated:Human:Digestive system:Intestine 1.0 genus Subdoligranulum root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Subdoligranulum root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Subdoligranulum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Subdoligranulum root:Host-associated:Birds:Digestive system:Ceca 2.0 genus Subdoligranulum root:Host-associated:Human:Digestive system 6.0 genus Subdoligranulum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 @@ -38474,13 +39462,13 @@ genus Cetobacterium root:Mixed 1.0 genus Cetobacterium root:Environmental:Terrestrial:Soil 1.0 genus Cetobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Cetobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -genus Cetobacterium root:Host-associated:Fish:Digestive system 1.0 +genus Cetobacterium root:Host-associated:Fish:Digestive system 2.0 genus Cetobacterium root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Cetobacterium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Candidatus Dorea massiliensis root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Candidatus Dorea massiliensis root:Host-associated:Mammals 1.0 species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Fecal 9.0 -species Akkermansia muciniphila root:Host-associated:Human:Digestive system:Large intestine:Fecal 40.0 +species Akkermansia muciniphila root:Host-associated:Human:Digestive system:Large intestine:Fecal 42.0 species Akkermansia muciniphila root:Environmental:Aquatic:Marine 4.0 species Akkermansia muciniphila root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system 8.0 @@ -38491,9 +39479,12 @@ species Akkermansia muciniphila root:Engineered:Wastewater 1.0 species Akkermansia muciniphila root:Host-associated:Plants:Rhizosphere 1.0 species Akkermansia muciniphila root:Environmental:Aquatic:Marine:Sediment 1.0 species Akkermansia muciniphila root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Akkermansia muciniphila root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Midgut 3.0 +species Akkermansia muciniphila root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Akkermansia muciniphila root:Host-associated:Human:Digestive system 5.0 species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 -species Akkermansia muciniphila root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Akkermansia muciniphila root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species Akkermansia muciniphila root:Host-associated 1.0 species Akkermansia muciniphila root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -38501,14 +39492,16 @@ species Akkermansia muciniphila root:Host-associated:Human:Digestive system:Larg species Akkermansia muciniphila root:Host-associated:Mammals:Gastrointestinal tract 2.0 species Akkermansia muciniphila root:Engineered:Built environment 1.0 species Akkermansia muciniphila root:Host-associated:Animal:Digestive system:Fecal 1.0 -species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Midgut 2.0 species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +species Akkermansia muciniphila root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Akkermansia muciniphila root:Host-associated:Human:Circulatory system:Blood 1.0 species Akkermansia muciniphila root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species Intestinibacillus massiliensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Fusicatenibacter saccharivorans root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Fusicatenibacter saccharivorans root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +species Fusicatenibacter saccharivorans root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 species Fusicatenibacter saccharivorans root:Host-associated:Mammals:Digestive system 1.0 +species Fusicatenibacter saccharivorans root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Fusicatenibacter saccharivorans root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Fusicatenibacter saccharivorans root:Host-associated:Human:Digestive system 2.0 species Clostridioides difficile root:Host-associated:Mammals:Digestive system:Fecal 6.0 species Clostridioides difficile root:Host-associated:Human:Digestive system:Large intestine:Fecal 18.0 @@ -38518,20 +39511,21 @@ species Clostridioides difficile root:Host-associated:Human:Digestive system:Lar species Clostridioides difficile root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 species Clostridioides difficile root:Host-associated:Human:Digestive system:Oral 1.0 species Clostridioides difficile root:Engineered:Food production:Dairy products 1.0 +species Clostridioides difficile root:Engineered:Lab enrichment 1.0 species Clostridioides difficile root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Clostridioides difficile root:Host-associated:Human:Digestive system 2.0 species Clostridioides difficile root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Clostridioides difficile root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Clostridioides difficile root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Clostridioides difficile root:Host-associated:Birds:Digestive system 1.0 -species Clostridioides difficile root:Engineered:Lab enrichment 1.0 species Dorea longicatena root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Dorea longicatena root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 -species Dorea longicatena root:Host-associated:Human:Digestive system:Large intestine 3.0 +species Dorea longicatena root:Host-associated:Human:Digestive system:Large intestine:Fecal 24.0 +species Dorea longicatena root:Host-associated:Human:Digestive system:Large intestine 4.0 species Dorea longicatena root:Engineered:Wastewater:Activated Sludge 1.0 species Dorea longicatena root:Host-associated:Human:Digestive system:Intestine 1.0 species Dorea longicatena root:Environmental:Terrestrial:Soil 1.0 species Dorea longicatena root:Host-associated:Human:Digestive system 7.0 +species Dorea longicatena root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Dorea longicatena root:Environmental:Terrestrial 1.0 species Cuneatibacter caecimuris root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Cuneatibacter caecimuris root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -38546,11 +39540,11 @@ genus Ruminobacter root:Mixed 1.0 genus Ruminobacter root:Host-associated:Mammals 1.0 genus Ruminobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Ruminobacter root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Ruminobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -genus Ruminobacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +genus Ruminobacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +genus Ruminobacter root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 genus Ruminobacter root:Host-associated:Animal:Digestive system 1.0 genus Roseburia root:Host-associated:Mammals:Digestive system:Fecal 13.0 -genus Roseburia root:Host-associated:Human:Digestive system:Large intestine:Fecal 56.0 +genus Roseburia root:Host-associated:Human:Digestive system:Large intestine:Fecal 64.0 genus Roseburia root:Environmental:Aquatic:Marine 1.0 genus Roseburia root:Host-associated:Mammals:Digestive system 9.0 genus Roseburia root:Host-associated:Human 1.0 @@ -38560,14 +39554,15 @@ genus Roseburia root:Host-associated:Human:Skin 1.0 genus Roseburia root:Host-associated:Mammals 3.0 genus Roseburia root:Host-associated:Human:Digestive system:Intestine 3.0 genus Roseburia root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Roseburia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Roseburia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Roseburia root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Roseburia root:Host-associated:Human:Digestive system 15.0 -genus Roseburia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 11.0 +genus Roseburia root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 12.0 genus Roseburia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 genus Roseburia root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 genus Roseburia root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Roseburia root:Host-associated:Animal:Digestive system 1.0 -genus Roseburia root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Roseburia root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 genus Roseburia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Roseburia root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 @@ -38575,10 +39570,12 @@ genus Roseburia root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Roseburia root:Host-associated:Animal:Digestive system:Fecal 2.0 genus Roseburia root:Host-associated:Reptile 1.0 genus Roseburia root:Host-associated:Mammals:Skin 1.0 +genus Roseburia root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Roseburia root:Host-associated:Human:Circulatory system 1.0 species Acetivibrio ethanolgignens root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Acetivibrio ethanolgignens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Acetivibrio ethanolgignens root:Host-associated:Mammals:Digestive system 2.0 +species Acetivibrio ethanolgignens root:Host-associated:Mammals:Digestive system:Midgut 1.0 species bacterium YE59 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Sporobacter termitidis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Sporobacter termitidis root:Environmental:Aquatic:Marine 2.0 @@ -38594,6 +39591,7 @@ species bacterium WCE2003 root:Host-associated:Animal:Digestive system:Fecal 1.0 species bacterium AC2043 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Thiobaca trueperi root:Host-associated:Mammals:Digestive system:Fecal 1.0 phylum Candidatus Cloacimonetes root:Host-associated:Mammals:Digestive system:Fecal 1.0 +phylum Candidatus Cloacimonetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Candidatus Cloacimonetes root:Host-associated:Human 1.0 phylum Candidatus Cloacimonetes root:Engineered:Bioreactor 5.0 phylum Candidatus Cloacimonetes root:Engineered:Wastewater:Activated Sludge 19.0 @@ -38603,6 +39601,7 @@ phylum Candidatus Cloacimonetes root:Engineered:Wastewater 3.0 phylum Candidatus Cloacimonetes root:Environmental:Aquatic:Marine:Sediment 2.0 phylum Candidatus Cloacimonetes root:Engineered:Biogas plant:Wet fermentation 1.0 phylum Candidatus Cloacimonetes root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +phylum Candidatus Cloacimonetes root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Candidatus Cloacimonetes root:Host-associated:Birds:Digestive system 1.0 order Acholeplasmatales root:Host-associated:Mammals:Digestive system:Fecal 2.0 order Acholeplasmatales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -38617,11 +39616,13 @@ order Acholeplasmatales root:Environmental:Aquatic:Marine:Intertidal zone:Coral order Acholeplasmatales root:Environmental:Aquatic:Marine:Coastal 1.0 order Acholeplasmatales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Acholeplasmatales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +order Acholeplasmatales root:Engineered:Food production:Fermented seafood 1.0 order Acholeplasmatales root:Environmental:Aquatic:Estuary 1.0 order Acholeplasmatales root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order Acholeplasmatales root:Engineered:Wastewater:Water and sludge 2.0 order Acholeplasmatales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Acholeplasmatales root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 +order Acholeplasmatales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Acholeplasmatales root:Host-associated:Birds:Digestive system 1.0 order Acholeplasmatales root:Engineered:Biogas plant 3.0 order Acholeplasmatales root:Host-associated:Mammals:Respiratory system 1.0 @@ -38633,15 +39634,19 @@ family Dysgonamonadaceae root:Environmental:Aquatic:Marine 3.0 family Dysgonamonadaceae root:Engineered:Bioreactor 2.0 family Dysgonamonadaceae root:Engineered:Food production:Fermented beverages 1.0 family Dysgonamonadaceae root:Environmental:Aquatic:Sediment 1.0 +family Dysgonamonadaceae root:Engineered:Food production:Fermented seafood 1.0 family Dysgonamonadaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Dysgonamonadaceae root:Engineered:Wastewater:Water and sludge 2.0 +family Dysgonamonadaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Dysgonamonadaceae root:Host-associated:Insecta 1.0 family Dysgonamonadaceae root:Host-associated:Mollusca:Digestive system 1.0 +family Dysgonamonadaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Tissierellaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 family Tissierellaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Tissierellaceae root:Engineered:Bioreactor 1.0 family Tissierellaceae root:Engineered:Food production:Fermented beverages 1.0 family Tissierellaceae root:Environmental:Aquatic:Marine:Coastal 1.0 +family Tissierellaceae root:Engineered:Food production:Fermented seafood 1.0 family Tissierellaceae root:Engineered:Wastewater:Water and sludge 1.0 family Carnobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 family Carnobacteriaceae root:Host-associated:Human:Digestive system:Oral:Saliva 12.0 @@ -38678,6 +39683,7 @@ family Carnobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 family Carnobacteriaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 family Carnobacteriaceae root:Engineered:Food production 5.0 family Carnobacteriaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 +family Carnobacteriaceae root:Engineered:Food production:Fermented seafood 1.0 family Carnobacteriaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Carnobacteriaceae root:Host-associated:Animal:Digestive system 1.0 family Carnobacteriaceae root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -38704,23 +39710,29 @@ genus Proteiniphilum root:Engineered:Bioreactor 3.0 genus Proteiniphilum root:Engineered:Food production:Fermented beverages 1.0 genus Proteiniphilum root:Environmental:Aquatic:Sediment 1.0 genus Proteiniphilum root:Engineered:Biogas plant:Wet fermentation 1.0 +genus Proteiniphilum root:Engineered:Food production:Fermented seafood 1.0 genus Proteiniphilum root:Engineered:Bioreactor:Continuous culture 1.0 genus Proteiniphilum root:Engineered:Wastewater:Water and sludge 2.0 +genus Proteiniphilum root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Fastidiosipila root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Fastidiosipila root:Engineered:Bioreactor 1.0 genus Fastidiosipila root:Engineered:Food production:Fermented beverages 1.0 genus Fastidiosipila root:Host-associated:Human:Reproductive system:Vagina 1.0 +genus Fastidiosipila root:Engineered:Food production:Fermented seafood 1.0 genus Fastidiosipila root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Fastidiosipila root:Engineered:Wastewater:Water and sludge 1.0 +genus Fastidiosipila root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Tissierella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Tissierella root:Engineered:Bioreactor 1.0 genus Tissierella root:Environmental:Aquatic 1.0 genus Tissierella root:Environmental:Aquatic:Marine:Coastal 1.0 +genus Tissierella root:Engineered:Food production:Fermented seafood 1.0 genus Tissierella root:Engineered:Wastewater:Water and sludge 1.0 genus Anaerocella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Anaerocella root:Engineered:Solid waste:Composting 1.0 genus Atopostipes root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Atopostipes root:Host-associated:Mammals 1.0 +genus Atopostipes root:Engineered:Food production:Fermented seafood 1.0 species Pleomorphochaeta caudata root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Pleomorphochaeta caudata root:Environmental:Aquatic:Marine 1.0 species Pleomorphochaeta caudata root:Environmental:Aquatic:Sediment 1.0 @@ -38740,18 +39752,21 @@ species Treponema porcinum root:Host-associated:Mammals:Digestive system:Stomach species Treponema porcinum root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Porphyromonadaceae bacterium DJF B175 root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Porphyromonadaceae bacterium DJF B175 root:Host-associated:Mammals 1.0 +species Porphyromonadaceae bacterium DJF B175 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Planococcaceae bacterium Storch 2/2-2 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Planococcaceae bacterium Storch 2/2-2 root:Engineered:Solid waste 1.0 species Planococcaceae bacterium Storch 2/2-2 root:Host-associated:Fish:Digestive system:Intestine 1.0 species bacterium enrichment culture clone E31 A root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Desulfonispora thiosulfatigenes root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Clostridiales bacterium FK041 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Clostridiales bacterium FK041 root:Engineered:Food production:Fermented seafood 1.0 species Clostridiales bacterium FK041 root:Engineered:Wastewater:Water and sludge 1.0 genus Anaerotruncus root:Host-associated:Mammals:Digestive system:Fecal 3.0 genus Anaerotruncus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Anaerotruncus root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 genus Anaerotruncus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Anaerotruncus root:Host-associated:Mammals:Respiratory system 1.0 +genus Anaerotruncus root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Intestinimonas root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Intestinimonas root:Host-associated:Birds:Digestive system:Fecal 1.0 genus Intestinimonas root:Host-associated:Mammals:Digestive system 1.0 @@ -38761,8 +39776,9 @@ genus Intestinimonas root:Host-associated:Birds:Digestive system:Digestive tube: genus Intestinimonas root:Host-associated:Human:Circulatory system 1.0 species Actinobacteria bacterium UC5.1-1B11 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bifidobacterium animalis root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Bifidobacterium animalis root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +species Bifidobacterium animalis root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 species Bifidobacterium animalis root:Host-associated:Mammals 1.0 +species Bifidobacterium animalis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Bifidobacterium animalis root:Host-associated:Human:Digestive system 1.0 species Bifidobacterium animalis root:Engineered:Food production 1.0 species Bifidobacterium animalis root:Host-associated:Mammals:Gastrointestinal tract 1.0 @@ -38772,7 +39788,7 @@ species Lactobacillus sp. ASF360 root:Host-associated:Mammals:Digestive system:F species Lactobacillus sp. ASF360 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 phylum Candidatus Peregrinibacteria root:Host-associated:Mammals:Digestive system:Fecal 3.0 phylum Candidatus Peregrinibacteria root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 -phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine 8.0 +phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine 9.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Oceanic 4.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Candidatus Peregrinibacteria root:Host-associated:Human 1.0 @@ -38784,6 +39800,7 @@ phylum Candidatus Peregrinibacteria root:Host-associated:Human:Digestive system: phylum Candidatus Peregrinibacteria root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Sediment 3.0 +phylum Candidatus Peregrinibacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Candidatus Peregrinibacteria root:Host-associated:Human:Digestive system 1.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Coastal 2.0 phylum Candidatus Peregrinibacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 @@ -38791,13 +39808,13 @@ phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Hydrotherm phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Candidatus Peregrinibacteria root:Host-associated:Animal:Digestive system 1.0 phylum Candidatus Peregrinibacteria root:Engineered:Wastewater:Industrial wastewater 1.0 -phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Freshwater:Groundwater 2.0 phylum Candidatus Peregrinibacteria root:Engineered:Wastewater:Water and sludge 3.0 phylum Candidatus Peregrinibacteria root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 phylum Candidatus Peregrinibacteria root:Host-associated:Birds 1.0 phylum Candidatus Peregrinibacteria root:Engineered:Industrial production 1.0 -phylum Candidatus Peregrinibacteria root:Host-associated:Mammals:Digestive system:Midgut 1.0 +phylum Candidatus Peregrinibacteria root:Host-associated:Arthropoda:Digestive system:Oral 1.0 phylum Candidatus Peregrinibacteria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 phylum Candidatus Peregrinibacteria root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 phylum Candidatus Peregrinibacteria root:Host-associated:Cnidaria 2.0 @@ -38805,9 +39822,9 @@ phylum Candidatus Peregrinibacteria root:Environmental:Aquatic:Marine:Hydrotherm family Deferribacteraceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 family Deferribacteraceae root:Engineered:Bioreactor 1.0 family Deferribacteraceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Deferribacteraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Deferribacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 family Deferribacteraceae root:Host-associated:Mammals:Digestive system:Large intestine 4.0 -family Deferribacteraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Deferribacteraceae root:Host-associated:Mammals:Gastrointestinal tract 1.0 family Deferribacteraceae root:Host-associated:Mammals:Respiratory system 1.0 family Deferribacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 @@ -38821,7 +39838,7 @@ species Oscillibacter sp. 1-3 root:Host-associated:Mammals:Digestive system 2.0 species Oscillibacter sp. 1-3 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Rikenella microfusus root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Rikenella microfusus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -order Anaeroplasmatales root:Host-associated:Mammals:Digestive system:Fecal 12.0 +order Anaeroplasmatales root:Host-associated:Mammals:Digestive system:Fecal 13.0 order Anaeroplasmatales root:Host-associated:Birds:Digestive system:Fecal 1.0 order Anaeroplasmatales root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 order Anaeroplasmatales root:Environmental:Aquatic:Marine 1.0 @@ -38835,22 +39852,23 @@ order Anaeroplasmatales root:Host-associated:Mammals:Gastrointestinal tract 1.0 order Anaeroplasmatales root:Host-associated:Birds:Digestive system 1.0 order Anaeroplasmatales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 order Pasteurellales root:Host-associated:Mammals:Digestive system:Fecal 2.0 -order Pasteurellales root:Host-associated:Human:Digestive system:Oral:Saliva 24.0 +order Pasteurellales root:Host-associated:Human:Digestive system:Oral:Saliva 25.0 order Pasteurellales root:Host-associated:Human:Digestive system:Large intestine:Fecal 43.0 order Pasteurellales root:Host-associated:Mammals:Digestive system 8.0 order Pasteurellales root:Environmental:Terrestrial:Soil:Forest soil 1.0 -order Pasteurellales root:Host-associated:Human 10.0 +order Pasteurellales root:Host-associated:Human 11.0 order Pasteurellales root:Host-associated:Plants 1.0 order Pasteurellales root:Host-associated:Human:Digestive system:Large intestine 3.0 order Pasteurellales root:Host-associated:Human:Skin 7.0 order Pasteurellales root:Mixed 8.0 order Pasteurellales root:Host-associated:Mammals 4.0 order Pasteurellales root:Host-associated:Human:Reproductive system:Vagina 1.0 -order Pasteurellales root:Host-associated:Human:Digestive system:Oral 48.0 +order Pasteurellales root:Host-associated:Human:Digestive system:Oral 49.0 order Pasteurellales root:Environmental:Terrestrial:Soil 1.0 order Pasteurellales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 order Pasteurellales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Pasteurellales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 +order Pasteurellales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Pasteurellales root:Host-associated:Human:Digestive system 7.0 order Pasteurellales root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 7.0 order Pasteurellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 @@ -38858,7 +39876,6 @@ order Pasteurellales root:Host-associated:Human:Digestive system:Oral:Subgingiva order Pasteurellales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Pasteurellales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order Pasteurellales root:Engineered:Food production 2.0 -order Pasteurellales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Pasteurellales root:Host-associated:Mammals:Digestive system:Large intestine 3.0 order Pasteurellales root:Host-associated:Human:Respiratory system:Nasopharyngeal 6.0 order Pasteurellales root:Host-associated:Human:Skin:Naris 1.0 @@ -38887,6 +39904,7 @@ order Pasteurellales root:Host-associated:Human:Respiratory system:Pulmonary sys order Pasteurellales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 species Clostridiales bacterium CIEAF 020 root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Clostridiales bacterium CIEAF 020 root:Host-associated:Mammals:Digestive system 4.0 +species Clostridiales bacterium CIEAF 020 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Clostridiales bacterium CIEAF 020 root:Environmental:Aquatic:Marine:Coastal 1.0 species Clostridiales bacterium CIEAF 020 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 species Clostridiales bacterium CIEAF 020 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -38910,30 +39928,35 @@ species [Clostridium] papyrosolvens root:Host-associated:Animal:Digestive system species [Clostridium] papyrosolvens root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species [Clostridium] papyrosolvens root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Bacteroidaceae bacterium DJF B220 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Bacteroidaceae bacterium DJF B220 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bacteroidaceae bacterium DJF B220 root:Host-associated:Human:Digestive system 1.0 species Bacteroidaceae bacterium DJF B220 root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species bacterium RA2114 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bacteroidales bacterium H4 root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Bacteroidales bacterium H4 root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +species Bacteroidales bacterium H4 root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 species Bacteroidales bacterium H4 root:Host-associated:Mammals:Digestive system 1.0 species Bacteroidales bacterium H4 root:Engineered:Wastewater:Activated Sludge 1.0 species Bacteroidales bacterium H4 root:Environmental:Terrestrial:Soil 1.0 +species Bacteroidales bacterium H4 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Bacteroidales bacterium H4 root:Host-associated:Human:Digestive system 2.0 species Bacteroidales bacterium H4 root:Environmental:Terrestrial 1.0 species Bacteroidales bacterium H4 root:Host-associated:Birds:Digestive system 1.0 +species Bacteroidales bacterium H4 root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Eubacterium coprostanoligenes root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Eubacterium coprostanoligenes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Eubacterium coprostanoligenes root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Eubacterium coprostanoligenes root:Mixed 1.0 species Eubacterium coprostanoligenes root:Environmental:Aquatic:Marine:Sediment 1.0 +species Eubacterium coprostanoligenes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Eubacterium coprostanoligenes root:Host-associated:Human:Digestive system 1.0 species Eubacterium coprostanoligenes root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Eubacterium coprostanoligenes root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Chlamydia suis root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Chlamydia suis root:Mixed 1.0 +species Chlamydia suis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Dialister root:Host-associated:Mammals:Digestive system:Fecal 4.0 genus Dialister root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -genus Dialister root:Host-associated:Human:Digestive system:Large intestine:Fecal 36.0 -genus Dialister root:Host-associated:Mammals:Digestive system 1.0 +genus Dialister root:Host-associated:Human:Digestive system:Large intestine:Fecal 38.0 +genus Dialister root:Host-associated:Mammals:Digestive system 2.0 genus Dialister root:Host-associated:Human:Digestive system:Large intestine 2.0 genus Dialister root:Engineered:Wastewater:Activated Sludge 1.0 genus Dialister root:Host-associated:Human:Skin 1.0 @@ -38946,35 +39969,37 @@ genus Dialister root:Host-associated:Human:Digestive system:Oral 4.0 genus Dialister root:Environmental:Terrestrial:Soil 1.0 genus Dialister root:Environmental:Aquatic:Marine:Sediment 2.0 genus Dialister root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Dialister root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Dialister root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Dialister root:Host-associated:Human:Digestive system 6.0 genus Dialister root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Dialister root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Dialister root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Dialister root:Host-associated:Human:Reproductive system:Female 1.0 -genus Dialister root:Engineered:Wastewater:Water and sludge 1.0 +genus Dialister root:Engineered:Wastewater:Water and sludge 2.0 genus Dialister root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 genus Dialister root:Environmental:Terrestrial 1.0 species Phascolarctobacterium succinatutens root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Phascolarctobacterium succinatutens root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Phascolarctobacterium succinatutens root:Host-associated:Human:Digestive system:Large intestine 3.0 -species Phascolarctobacterium succinatutens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Phascolarctobacterium succinatutens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Phascolarctobacterium succinatutens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Lactobacillus amylovorus root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Lactobacillus amylovorus root:Host-associated:Mammals:Digestive system 1.0 species Lactobacillus amylovorus root:Mixed 1.0 -species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Digestive system:Fecal 3.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Digestive system 1.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Human:Digestive system:Large intestine 2.0 -species Christensenellaceae bacterium Phil1 root:Mixed 1.0 +species Christensenellaceae bacterium Phil1 root:Mixed 2.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Human:Digestive system:Intestine 1.0 species Christensenellaceae bacterium Phil1 root:Engineered:Wastewater 2.0 +species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Human:Digestive system 2.0 species Christensenellaceae bacterium Phil1 root:Environmental:Aquatic:Freshwater 1.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Animal:Digestive system 1.0 -species Christensenellaceae bacterium Phil1 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Christensenellaceae bacterium Phil1 root:Engineered:Wastewater:Water and sludge 1.0 species Christensenellaceae bacterium Phil1 root:Host-associated:Birds:Digestive system 1.0 species Christensenellaceae bacterium Phil1 root:Engineered:Biogas plant 1.0 species Campylobacter hyointestinalis root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -38984,21 +40009,25 @@ species Bacteroides xylanisolvens root:Host-associated:Human:Digestive system:La species Bacteroides xylanisolvens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bacteroides xylanisolvens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Roseburia faecis root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Roseburia faecis root:Host-associated:Human:Digestive system:Large intestine:Fecal 22.0 +species Roseburia faecis root:Host-associated:Human:Digestive system:Large intestine:Fecal 26.0 species Roseburia faecis root:Host-associated:Human 1.0 species Roseburia faecis root:Host-associated:Human:Digestive system:Large intestine 3.0 species Roseburia faecis root:Host-associated:Human:Digestive system:Intestine 1.0 +species Roseburia faecis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Roseburia faecis root:Host-associated:Human:Digestive system 8.0 -species Roseburia faecis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Roseburia faecis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 phylum Ciliophora root:Host-associated:Mammals:Digestive system:Fecal 2.0 -phylum Ciliophora root:Environmental:Aquatic:Marine 7.0 -phylum Ciliophora root:Environmental:Aquatic:Marine:Oceanic 2.0 +phylum Ciliophora root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +phylum Ciliophora root:Environmental:Aquatic:Marine 9.0 +phylum Ciliophora root:Environmental:Aquatic:Marine:Oceanic 4.0 phylum Ciliophora root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Ciliophora root:Host-associated:Plants 2.0 +phylum Ciliophora root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Ciliophora root:Environmental:Aquatic:Marine:Sediment 1.0 +phylum Ciliophora root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum Ciliophora root:Environmental:Aquatic:Freshwater 1.0 phylum Ciliophora root:Environmental:Aquatic:Marine:Coastal 1.0 -phylum Ciliophora root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +phylum Ciliophora root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 phylum Ciliophora root:Host-associated:Birds:Digestive system 1.0 species Lactobacillus delbrueckii root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lactobacillus delbrueckii root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -39013,6 +40042,7 @@ species Lactobacillus delbrueckii root:Host-associated:Human:Circulatory system species Lactobacillus mucosae root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lactobacillus mucosae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Lactobacillus mucosae root:Engineered:Food production:Fermented beverages 1.0 +species Lactobacillus mucosae root:Engineered:Food production:Dairy products 1.0 species Lactobacillus mucosae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus mucosae root:Engineered:Bioreactor:Continuous culture 1.0 species Clostridium perfringens root:Host-associated:Mammals:Digestive system:Fecal 2.0 @@ -39052,7 +40082,118 @@ species Turicibacter sanguinis root:Engineered:Solid waste:Composting 2.0 species Turicibacter sanguinis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Turicibacter sanguinis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Turicibacter sanguinis root:Host-associated:Mammals:Respiratory system 2.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 4.0 +family Coriobacteriaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 56.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system 3.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine 3.0 +family Coriobacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 +family Coriobacteriaceae root:Engineered:Bioreactor 2.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system:Intestine 1.0 +family Coriobacteriaceae root:Host-associated:Human:Reproductive system:Vagina 6.0 +family Coriobacteriaceae root:Environmental:Terrestrial:Soil 1.0 +family Coriobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 +family Coriobacteriaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system 7.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 +family Coriobacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +family Coriobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 +family Coriobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +family Coriobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 +family Coriobacteriaceae root:Host-associated:Animal:Digestive system 2.0 +family Coriobacteriaceae root:Host-associated:Human:Reproductive system:Female 1.0 +family Coriobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 +family Coriobacteriaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 +family Coriobacteriaceae root:Host-associated:Reptile 1.0 +family Coriobacteriaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 +family Coriobacteriaceae root:Host-associated:Mammals:Milk 1.0 +genus Sutterella root:Host-associated:Mammals:Digestive system:Fecal 1.0 +genus Sutterella root:Host-associated:Human:Digestive system:Large intestine:Fecal 17.0 +genus Sutterella root:Host-associated:Mammals:Digestive system 1.0 +genus Sutterella root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Sutterella root:Host-associated:Plants 1.0 +genus Sutterella root:Host-associated:Human:Digestive system:Large intestine 1.0 +genus Sutterella root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Sutterella root:Host-associated:Mammals 1.0 +genus Sutterella root:Host-associated:Human:Digestive system:Intestine 1.0 +genus Sutterella root:Engineered:Wastewater 1.0 +genus Sutterella root:Host-associated:Plants:Rhizosphere 2.0 +genus Sutterella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +genus Sutterella root:Host-associated:Birds:Digestive system:Ceca 1.0 +genus Sutterella root:Host-associated:Human:Digestive system 4.0 +genus Sutterella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 +genus Sutterella root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +genus Sutterella root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +genus Sutterella root:Engineered:Bioreactor:Continuous culture 1.0 +genus Sutterella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Sutterella root:Host-associated:Plants:Rhizome 1.0 +genus Sutterella root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +genus Faecalitalea root:Host-associated:Mammals:Digestive system:Fecal 1.0 +genus Faecalitalea root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +genus Faecalitalea root:Host-associated:Human:Digestive system:Large intestine 2.0 +genus Faecalitalea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Slackia piriformis root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Slackia piriformis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Slackia piriformis root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Collinsella tanakaei root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Collinsella tanakaei root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +species Collinsella tanakaei root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Collinsella tanakaei root:Host-associated:Animal:Digestive system 1.0 +species Collinsella tanakaei root:Host-associated:Animal:Digestive system:Fecal 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Digestive system:Fecal 3.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine:Fecal 57.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine 9.0 +species Ruminococcus sp. A254.MGS-254 root:Engineered:Bioreactor 1.0 +species Ruminococcus sp. A254.MGS-254 root:Engineered:Wastewater:Activated Sludge 1.0 +species Ruminococcus sp. A254.MGS-254 root:Mixed 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Intestine 1.0 +species Ruminococcus sp. A254.MGS-254 root:Environmental:Terrestrial:Soil 1.0 +species Ruminococcus sp. A254.MGS-254 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system:Ceca 2.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system 12.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Animal:Digestive system 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +species Ruminococcus sp. A254.MGS-254 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +species Ruminococcus sp. A254.MGS-254 root:Environmental:Terrestrial 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Respiratory system 1.0 +species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds 2.0 +species Firmicutes bacterium CAG:24053 14 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system:Intestine 1.0 +species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals:Digestive system:Fecal 3.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Large intestine:Fecal 22.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Large intestine 2.0 +species Clostridia bacterium UC5.1-1D10 root:Mixed 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Intestine 2.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system:Ceca 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Animal:Digestive system 1.0 +species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system 1.0 +species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system 1.0 +species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Allobaculum stercoricanis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +species Allobaculum stercoricanis root:Host-associated:Animal:Digestive system:Fecal 2.0 +species Blautia sp. Marseille-P3201T root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Anaerobiospirillum succiniciproducens root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Anaerobiospirillum succiniciproducens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 phylum Apicomplexa root:Host-associated:Mammals:Digestive system:Fecal 2.0 +phylum Apicomplexa root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Apicomplexa root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 phylum Apicomplexa root:Environmental:Aquatic:Marine 13.0 phylum Apicomplexa root:Environmental:Aquatic:Marine:Oceanic 3.0 @@ -39078,47 +40219,26 @@ phylum Apicomplexa root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1 phylum Apicomplexa root:Engineered:Food production 2.0 phylum Apicomplexa root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Apicomplexa root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -phylum Apicomplexa root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Apicomplexa root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +phylum Apicomplexa root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Apicomplexa root:Engineered:Built environment 2.0 phylum Apicomplexa root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 phylum Apicomplexa root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 genus Eggerthella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Eggerthella root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Eggerthella root:Host-associated:Human:Digestive system:Large intestine 1.0 +genus Eggerthella root:Engineered:Lab enrichment 1.0 genus Eggerthella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Eggerthella root:Host-associated:Human:Digestive system 1.0 genus Eggerthella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Eggerthella root:Engineered:Wastewater:Water and sludge 1.0 -genus Eggerthella root:Engineered:Lab enrichment 1.0 -genus Escherichia root:Host-associated:Mammals:Digestive system:Fecal 2.0 -genus Escherichia root:Host-associated:Birds:Digestive system:Fecal 1.0 -genus Escherichia root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 -genus Escherichia root:Environmental:Aquatic:Marine 4.0 -genus Escherichia root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Escherichia root:Host-associated:Mammals:Digestive system 1.0 -genus Escherichia root:Environmental:Aquatic:Lentic:Brackish 2.0 -genus Escherichia root:Host-associated:Human 1.0 -genus Escherichia root:Engineered:Wastewater:Activated Sludge 1.0 -genus Escherichia root:Host-associated:Mammals 1.0 -genus Escherichia root:Engineered:Food production:Dairy products 1.0 -genus Escherichia root:Environmental:Terrestrial:Soil 1.0 -genus Escherichia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -genus Escherichia root:Host-associated:Birds:Digestive system:Ceca 1.0 -genus Escherichia root:Host-associated:Human:Digestive system 1.0 -genus Escherichia root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -genus Escherichia root:Engineered:Food production 1.0 -genus Escherichia root:Environmental:Terrestrial 1.0 -genus Escherichia root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -genus Escherichia root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 -genus Escherichia root:Host-associated:Birds 1.0 species Bifidobacterium breve root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Bifidobacterium breve root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 +species Bifidobacterium breve root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 species Bifidobacterium breve root:Host-associated:Human 1.0 species Bifidobacterium breve root:Host-associated:Human:Digestive system:Large intestine 2.0 species Bifidobacterium breve root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bifidobacterium breve root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Enterococcus faecium root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Enterococcus faecium root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Enterococcus faecium root:Host-associated:Birds:Digestive system:Fecal 1.0 species Enterococcus faecium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Enterococcus faecium root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -39126,18 +40246,20 @@ species Enterococcus faecium root:Host-associated:Human:Digestive system:Oral:Su species Enterococcus faecium root:Host-associated:Animal:Digestive system 1.0 species Enterococcus faecium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Enterococcus faecium root:Host-associated:Human:Circulatory system:Blood 1.0 -species Enterococcus gallinarum root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Enterococcus gallinarum root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Enterococcus gallinarum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Enterococcus gallinarum root:Host-associated:Human 1.0 +species Enterococcus gallinarum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Enterococcus gallinarum root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Enterococcus gallinarum root:Host-associated:Mammals:Respiratory system 1.0 species Eggerthella lenta root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Eggerthella lenta root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Eggerthella lenta root:Host-associated:Human 1.0 +species Eggerthella lenta root:Engineered:Lab enrichment 1.0 species Eggerthella lenta root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Eggerthella lenta root:Engineered:Wastewater:Water and sludge 1.0 -species Eggerthella lenta root:Engineered:Lab enrichment 1.0 species Bifidobacterium pseudocatenulatum root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Bifidobacterium pseudocatenulatum root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 +species Bifidobacterium pseudocatenulatum root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 species Bifidobacterium pseudocatenulatum root:Host-associated:Human 1.0 species Bifidobacterium pseudocatenulatum root:Host-associated:Human:Digestive system:Large intestine 2.0 species Bifidobacterium pseudocatenulatum root:Engineered:Wastewater:Activated Sludge 1.0 @@ -39175,35 +40297,6 @@ family Anaeroplasmataceae root:Host-associated:Mammals:Digestive system:Stomach: family Anaeroplasmataceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 family Anaeroplasmataceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 family Anaeroplasmataceae root:Host-associated 1.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 -family Coriobacteriaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 53.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system 3.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine 3.0 -family Coriobacteriaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 -family Coriobacteriaceae root:Engineered:Bioreactor 2.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system:Intestine 1.0 -family Coriobacteriaceae root:Host-associated:Human:Reproductive system:Vagina 6.0 -family Coriobacteriaceae root:Environmental:Terrestrial:Soil 1.0 -family Coriobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 -family Coriobacteriaceae root:Host-associated:Birds:Digestive system:Ceca 1.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system 7.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 8.0 -family Coriobacteriaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -family Coriobacteriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 -family Coriobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -family Coriobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic 1.0 -family Coriobacteriaceae root:Host-associated:Animal:Digestive system 2.0 -family Coriobacteriaceae root:Host-associated:Human:Reproductive system:Female 1.0 -family Coriobacteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 -family Coriobacteriaceae root:Host-associated:Animal:Digestive system:Fecal 2.0 -family Coriobacteriaceae root:Host-associated:Reptile 1.0 -family Coriobacteriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 -family Coriobacteriaceae root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 -family Coriobacteriaceae root:Host-associated:Mammals:Milk 1.0 genus Anaeroplasma root:Host-associated:Mammals:Digestive system:Fecal 4.0 genus Anaeroplasma root:Engineered:Bioreactor 1.0 genus Anaeroplasma root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 @@ -39217,6 +40310,8 @@ genus Oscillospira root:Host-associated:Human:Digestive system:Large intestine:F genus Oscillospira root:Host-associated:Mammals:Digestive system 2.0 genus Oscillospira root:Engineered:Bioreactor 1.0 genus Oscillospira root:Environmental:Terrestrial:Soil 1.0 +genus Oscillospira root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Oscillospira root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Oscillospira root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Oscillospira root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Oscillospira root:Host-associated:Birds:Digestive system:Ceca 3.0 @@ -39224,10 +40319,8 @@ genus Oscillospira root:Host-associated:Mammals:Digestive system:Large intestine genus Oscillospira root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 genus Oscillospira root:Host-associated:Mammals:Digestive system:Large intestine 4.0 genus Oscillospira root:Host-associated 1.0 -genus Oscillospira root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Oscillospira root:Host-associated:Reptile 1.0 genus Oscillospira root:Host-associated:Birds 2.0 -genus Oscillospira root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Oscillospira root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 4.0 genus [Clostridium] root:Host-associated:Mammals:Digestive system:Fecal 11.0 genus [Clostridium] root:Host-associated:Birds:Digestive system:Fecal 4.0 @@ -39248,6 +40341,7 @@ genus [Clostridium] root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus [Clostridium] root:Environmental:Terrestrial:Soil 2.0 genus [Clostridium] root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus [Clostridium] root:Environmental:Aquatic 2.0 +genus [Clostridium] root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus [Clostridium] root:Engineered:Biogas plant:Wet fermentation 1.0 genus [Clostridium] root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus [Clostridium] root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -39268,7 +40362,6 @@ genus [Clostridium] root:Engineered:Wastewater:Industrial wastewater:Agricultura genus [Clostridium] root:Engineered:Biogas plant 3.0 genus [Clostridium] root:Host-associated:Reptile 1.0 genus [Clostridium] root:Host-associated:Birds 2.0 -genus [Clostridium] root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus [Clostridium] root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 genus [Clostridium] root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 genus [Clostridium] root:Host-associated:Mammals:Excretory system 1.0 @@ -39364,7 +40457,7 @@ phylum Nematoda root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 phylum Nematoda root:Host-associated:Mollusca 1.0 phylum Nematoda root:Environmental:Terrestrial:Soil:Clay 1.0 phylum Nematoda root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2.0 -phylum Nematoda root:Engineered:Wastewater:Water and sludge 1.0 +phylum Nematoda root:Engineered:Wastewater:Water and sludge 2.0 phylum Nematoda root:Environmental:Aquatic:Marine:Intertidal zone 1.0 phylum Nematoda root:Environmental:Terrestrial 1.0 phylum Nematoda root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -39377,6 +40470,7 @@ genus Megasphaera root:Host-associated:Mammals:Digestive system:Fecal 3.0 genus Megasphaera root:Host-associated:Birds:Digestive system:Fecal 1.0 genus Megasphaera root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 genus Megasphaera root:Environmental:Aquatic:Marine 1.0 +genus Megasphaera root:Host-associated:Mammals:Digestive system 1.0 genus Megasphaera root:Host-associated:Human 1.0 genus Megasphaera root:Host-associated:Plants 1.0 genus Megasphaera root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -39404,43 +40498,43 @@ genus Treponema root:Engineered:Food production:Dairy products 1.0 genus Treponema root:Host-associated:Plants:Rhizosphere 1.0 genus Treponema root:Environmental:Terrestrial:Soil 3.0 genus Treponema root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Treponema root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Treponema root:Engineered:Biogas plant:Wet fermentation 2.0 +genus Treponema root:Engineered:Lab enrichment 1.0 genus Treponema root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 genus Treponema root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Treponema root:Host-associated:Human:Digestive system 2.0 genus Treponema root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 genus Treponema root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 genus Treponema root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 7.0 -genus Treponema root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +genus Treponema root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 genus Treponema root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Treponema root:Engineered:Lab enrichment:Defined media 1.0 genus Treponema root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Treponema root:Engineered:Wastewater:Industrial wastewater 2.0 genus Treponema root:Host-associated 1.0 -genus Treponema root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Treponema root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Treponema root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Treponema root:Engineered:Bioreactor:Continuous culture 1.0 genus Treponema root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Treponema root:Host-associated:Insecta 1.0 genus Treponema root:Host-associated:Birds:Digestive system 1.0 -genus Treponema root:Engineered:Lab enrichment 1.0 genus Treponema root:Engineered:Biogas plant 1.0 species Ruminococcus champanellensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Ruminococcus champanellensis root:Host-associated:Mammals:Digestive system 1.0 species Treponema sp. JC4 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Treponema sp. JC4 root:Host-associated:Mammals:Digestive system 1.0 -species Treponema sp. JC4 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Treponema sp. JC4 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Treponema sp. JC4 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Clostridium disporicum root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Clostridium disporicum root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Clostridium disporicum root:Engineered:Solid waste:Composting 2.0 species Treponema succinifaciens root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Treponema succinifaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Treponema succinifaciens root:Host-associated:Mammals:Digestive system 1.0 +species Treponema succinifaciens root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 2.0 species Treponema succinifaciens root:Host-associated:Human:Digestive system 1.0 species Treponema succinifaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Treponema succinifaciens root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Treponema succinifaciens root:Host-associated:Birds:Digestive system 1.0 species [Eubacterium] hallii root:Host-associated:Mammals:Digestive system:Fecal 1.0 species [Eubacterium] hallii root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 @@ -39530,13 +40624,13 @@ species Turicibacter sobrinus root:Engineered:Bioreactor 1.0 species Turicibacter sobrinus root:Engineered:Wastewater 1.0 species Turicibacter sobrinus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Turicibacter sobrinus root:Environmental:Aquatic 2.0 +species Turicibacter sobrinus root:Engineered:Lab enrichment 1.0 +species Turicibacter sobrinus root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Turicibacter sobrinus root:Host-associated:Human:Digestive system 1.0 species Turicibacter sobrinus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 -species Turicibacter sobrinus root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Turicibacter sobrinus root:Engineered:Modeled 1.0 species Turicibacter sobrinus root:Engineered:Wastewater:Water and sludge 1.0 species Turicibacter sobrinus root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Turicibacter sobrinus root:Engineered:Lab enrichment 1.0 species Turicibacter sobrinus root:Host-associated:Birds 1.0 species Turicibacter sobrinus root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species Streptococcus garvieae root:Host-associated:Mammals:Digestive system:Fecal 2.0 @@ -39550,11 +40644,11 @@ species Streptococcus garvieae root:Host-associated:Human:Skin 2.0 species Streptococcus garvieae root:Engineered:Food production:Fermented beverages 1.0 species Streptococcus garvieae root:Host-associated:Human:Digestive system:Oral 1.0 species Streptococcus garvieae root:Engineered:Food production:Dairy products 13.0 +species Streptococcus garvieae root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Streptococcus garvieae root:Host-associated:Human:Digestive system 2.0 species Streptococcus garvieae root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 species Streptococcus garvieae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Streptococcus garvieae root:Engineered:Food production 1.0 -species Streptococcus garvieae root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Streptococcus garvieae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Streptococcus garvieae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species Streptococcus garvieae root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -39599,25 +40693,26 @@ species [Clostridium] fimetarium root:Host-associated:Mammals:Digestive system:F species [Clostridium] fimetarium root:Host-associated:Fish:Digestive system 1.0 species [Clostridium] fimetarium root:Host-associated:Reptile 1.0 species Dialister succinatiphilus root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Dialister succinatiphilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Dialister succinatiphilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 species Dialister succinatiphilus root:Host-associated:Human:Digestive system:Large intestine 3.0 species Dialister succinatiphilus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Treponema berlinense root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Treponema berlinense root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Treponema berlinense root:Host-associated:Mammals:Digestive system 1.0 species Treponema berlinense root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Treponema berlinense root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Treponema berlinense root:Host-associated:Human:Digestive system 1.0 species Treponema berlinense root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Treponema berlinense root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Treponema berlinense root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Treponema berlinense root:Host-associated:Birds:Digestive system 1.0 -genus Porphyromonas root:Host-associated:Mammals:Digestive system:Fecal 2.0 -genus Porphyromonas root:Host-associated:Human:Digestive system:Oral:Saliva 18.0 +genus Porphyromonas root:Host-associated:Mammals:Digestive system:Fecal 3.0 +genus Porphyromonas root:Host-associated:Human:Digestive system:Oral:Saliva 19.0 genus Porphyromonas root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 genus Porphyromonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +genus Porphyromonas root:Environmental:Aquatic:Marine 1.0 genus Porphyromonas root:Host-associated:Mammals:Digestive system 2.0 genus Porphyromonas root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Porphyromonas root:Host-associated:Human 2.0 +genus Porphyromonas root:Host-associated:Human 3.0 genus Porphyromonas root:Host-associated:Human:Skin 3.0 genus Porphyromonas root:Mixed 1.0 genus Porphyromonas root:Host-associated:Human:Reproductive system:Vagina 3.0 @@ -39703,9 +40798,9 @@ order Turicibacterales root:Host-associated:Human:Digestive system:Large intesti order Turicibacterales root:Host-associated:Mammals:Digestive system 3.0 order Turicibacterales root:Engineered:Food production:Dairy products 4.0 order Turicibacterales root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +order Turicibacterales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Turicibacterales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 order Turicibacterales root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -order Turicibacterales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Turicibacterales root:Host-associated:Mammals:Digestive system:Large intestine 2.0 order Turicibacterales root:Host-associated 1.0 order Turicibacterales root:Host-associated:Birds:Digestive system:Digestive tube 1.0 @@ -39714,10 +40809,10 @@ order Turicibacterales root:Host-associated:Mammals:Milk 1.0 family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Fecal 3.0 family [Odoribacteraceae] root:Host-associated:Birds:Digestive system:Fecal 1.0 family [Odoribacteraceae] root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 -family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 -family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family [Odoribacteraceae] root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Midgut 1.0 +family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 9.0 +family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Large intestine 2.0 family [Odoribacteraceae] root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 genus Rikenella root:Host-associated:Mammals:Digestive system:Fecal 5.0 genus Rikenella root:Host-associated:Birds:Digestive system:Fecal 1.0 @@ -39725,15 +40820,15 @@ genus Rikenella root:Host-associated:Human:Digestive system:Large intestine:Feca genus Rikenella root:Host-associated:Mammals:Digestive system 2.0 genus Rikenella root:Engineered:Wastewater:Activated Sludge 1.0 genus Rikenella root:Host-associated:Mammals 1.0 +genus Rikenella root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Rikenella root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Rikenella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Rikenella root:Host-associated:Birds:Digestive system:Ceca 2.0 genus Rikenella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 11.0 genus Rikenella root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Rikenella root:Engineered:Wastewater:Industrial wastewater 1.0 -genus Rikenella root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Rikenella root:Host-associated:Fish:Digestive system 1.0 genus Rikenella root:Host-associated:Birds 1.0 -genus Rikenella root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Rikenella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Rikenella root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 genus Rikenella root:Host-associated:Mammals:Milk 1.0 @@ -39747,21 +40842,21 @@ genus Allobaculum root:Host-associated:Human:Digestive system:Large intestine:Fe genus Allobaculum root:Host-associated:Mammals:Digestive system 2.0 genus Allobaculum root:Host-associated:Plants:Rhizosphere 2.0 genus Allobaculum root:Environmental:Terrestrial:Soil 1.0 -genus Allobaculum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 +genus Allobaculum root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Allobaculum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Allobaculum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 genus Allobaculum root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Allobaculum root:Host-associated:Mammals:Gastrointestinal tract:Intestine 2.0 -genus Allobaculum root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Allobaculum root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 3.0 species Rikenella massiliensis root:Host-associated:Mammals:Digestive system:Fecal 3.0 species Rikenella massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Rikenella massiliensis root:Host-associated:Mammals:Digestive system 1.0 species Rikenella massiliensis root:Engineered:Wastewater:Activated Sludge 1.0 species Rikenella massiliensis root:Host-associated:Mammals 1.0 +species Rikenella massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Rikenella massiliensis root:Host-associated:Birds:Digestive system:Ceca 1.0 species Rikenella massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Rikenella massiliensis root:Engineered:Wastewater:Industrial wastewater 1.0 -species Rikenella massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Rikenella massiliensis root:Host-associated:Birds 1.0 species Rikenella massiliensis root:Host-associated:Mammals:Milk 1.0 species Lutispora perfringens root:Host-associated:Mammals:Digestive system:Fecal 3.0 @@ -39777,7 +40872,9 @@ species Prevotella stercorea root:Host-associated:Birds:Digestive system:Fecal 1 species Prevotella stercorea root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 species Prevotella stercorea root:Host-associated:Plants:Phylloplane 1.0 species Prevotella stercorea root:Host-associated:Plants:Rhizosphere 1.0 +species Prevotella stercorea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Prevotella stercorea root:Environmental:Aquatic 1.0 +species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 species Prevotella stercorea root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Prevotella stercorea root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -39785,22 +40882,20 @@ species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Large species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Prevotella stercorea root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Large intestine 2.0 -species Prevotella stercorea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Prevotella stercorea root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Prevotella stercorea root:Host-associated:Birds 2.0 -species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella stercorea root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Oscillospira prausnitzii root:Host-associated:Mammals:Digestive system:Fecal 5.0 species Oscillospira prausnitzii root:Host-associated:Birds:Digestive system:Fecal 3.0 species Oscillospira prausnitzii root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Oscillospira prausnitzii root:Host-associated:Mammals:Digestive system 1.0 species Oscillospira prausnitzii root:Engineered:Bioreactor 1.0 +species Oscillospira prausnitzii root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Oscillospira prausnitzii root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Oscillospira prausnitzii root:Host-associated:Birds:Digestive system:Ceca 3.0 species Oscillospira prausnitzii root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 species Oscillospira prausnitzii root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 species Oscillospira prausnitzii root:Host-associated:Mammals:Digestive system:Large intestine 2.0 -species Oscillospira prausnitzii root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Oscillospira prausnitzii root:Host-associated:Birds 2.0 species Oscillospira prausnitzii root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 species Thermoanaerobacter parvula root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -39812,8 +40907,8 @@ species Rubrobacter lenta root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Allobaculum parvula root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Allobaculum parvula root:Host-associated:Mammals:Digestive system 1.0 species Allobaculum parvula root:Host-associated:Plants:Rhizosphere 1.0 -species Allobaculum parvula root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Allobaculum parvula root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Allobaculum parvula root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Allobaculum parvula root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species [Clostridium] sordellii root:Host-associated:Mammals:Digestive system:Fecal 5.0 species [Clostridium] sordellii root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 @@ -39828,21 +40923,82 @@ species [Clostridium] sordellii root:Engineered:Biogas plant 1.0 species [Clostridium] sordellii root:Host-associated:Reptile 1.0 species [Clostridium] sordellii root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species [Clostridium] sordellii root:Host-associated:Mammals:Excretory system 1.0 -order Mycoplasmatales root:Host-associated:Mammals:Digestive system:Fecal 6.0 +family Peptoniphilaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 +family Peptoniphilaceae root:Host-associated:Human 6.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 +family Peptoniphilaceae root:Engineered:Bioreactor 1.0 +family Peptoniphilaceae root:Host-associated:Human:Skin 16.0 +family Peptoniphilaceae root:Mixed 1.0 +family Peptoniphilaceae root:Host-associated:Mammals 1.0 +family Peptoniphilaceae root:Host-associated:Human:Reproductive system:Vagina 8.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system:Oral 4.0 +family Peptoniphilaceae root:Environmental:Aquatic:Marine:Sediment 3.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system 1.0 +family Peptoniphilaceae root:Engineered:Solid waste:Composting 1.0 +family Peptoniphilaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 +family Peptoniphilaceae root:Engineered:Food production:Fermented seafood 1.0 +family Peptoniphilaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +family Peptoniphilaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 +family Peptoniphilaceae root:Host-associated:Human:Reproductive system:Female 1.0 +family Peptoniphilaceae root:Engineered:Wastewater:Water and sludge 1.0 +family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +family Peptoniphilaceae root:Host-associated:Insecta 1.0 +family Peptoniphilaceae root:Engineered:Built environment 6.0 +family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 +family Peptoniphilaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 +genus Vagococcus root:Host-associated:Mammals:Digestive system:Fecal 1.0 +genus Vagococcus root:Engineered:Food production:Silage fermentation 1.0 +genus Vagococcus root:Engineered:Food production:Dairy products 3.0 +genus Vagococcus root:Environmental:Terrestrial:Soil 1.0 +genus Vagococcus root:Engineered:Food production 1.0 +genus Vagococcus root:Host-associated:Insecta:Digestive system 1.0 +genus Vagococcus root:Engineered:Wastewater:Water and sludge 1.0 +genus Vagococcus root:Environmental:Terrestrial:Agricultural field 1.0 +genus Peptoniphilus root:Host-associated:Mammals:Digestive system:Fecal 1.0 +genus Peptoniphilus root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 +genus Peptoniphilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +genus Peptoniphilus root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Peptoniphilus root:Host-associated:Human 4.0 +genus Peptoniphilus root:Host-associated:Human:Skin 5.0 +genus Peptoniphilus root:Host-associated:Human:Reproductive system:Vagina 7.0 +genus Peptoniphilus root:Host-associated:Human:Digestive system:Oral 1.0 +genus Peptoniphilus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Peptoniphilus root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Peptoniphilus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Peptoniphilus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Peptoniphilus root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 +genus Peptoniphilus root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +genus Peptoniphilus root:Host-associated:Insecta 1.0 +genus Peptoniphilus root:Engineered:Built environment 3.0 +genus Peptoniphilus root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 +species Bacillus oleronius root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Bacillus oleronius root:Engineered:Food production:Fermented vegetables 1.0 +species Enterococcus durans root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Vagococcus lutrae root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Clostridium argentinense root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Peptoniphilus indolicus root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Clostridium tetani root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Clostridium tetani root:Engineered:Solid waste:Composting 1.0 +species Enterococcus mundtii root:Host-associated:Mammals:Digestive system:Fecal 1.0 +order Mycoplasmatales root:Host-associated:Mammals:Digestive system:Fecal 7.0 order Mycoplasmatales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 order Mycoplasmatales root:Host-associated:Fish 1.0 -order Mycoplasmatales root:Host-associated:Mammals:Digestive system 1.0 +order Mycoplasmatales root:Host-associated:Mammals:Digestive system 2.0 order Mycoplasmatales root:Host-associated:Human 1.0 order Mycoplasmatales root:Mixed 1.0 order Mycoplasmatales root:Host-associated:Mammals 3.0 order Mycoplasmatales root:Host-associated:Human:Reproductive system:Vagina 7.0 order Mycoplasmatales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Mycoplasmatales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Mycoplasmatales root:Environmental:Aquatic:Marine:Coastal 2.0 order Mycoplasmatales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 order Mycoplasmatales root:Host-associated 1.0 order Mycoplasmatales root:Host-associated:Mollusca 1.0 -order Mycoplasmatales root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -order Mycoplasmatales root:Host-associated:Fish:Digestive system 1.0 +order Mycoplasmatales root:Host-associated:Fish:Digestive system 2.0 order Mycoplasmatales root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 order Mycoplasmatales root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 order Mycoplasmatales root:Host-associated:Fish:Digestive system:Foregut 4.0 @@ -39862,12 +41018,15 @@ family Hungateiclostridiaceae root:Host-associated:Human:Digestive system:Large family Hungateiclostridiaceae root:Host-associated:Mammals:Digestive system 1.0 family Hungateiclostridiaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Hungateiclostridiaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 +family Hungateiclostridiaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Hungateiclostridiaceae root:Host-associated:Birds:Digestive system 1.0 -genus Mycoplasma root:Host-associated:Mammals:Digestive system:Fecal 7.0 +family Hungateiclostridiaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 +genus Mycoplasma root:Host-associated:Mammals:Digestive system:Fecal 8.0 genus Mycoplasma root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Mycoplasma root:Environmental:Aquatic:Marine 2.0 genus Mycoplasma root:Host-associated:Fish 1.0 genus Mycoplasma root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +genus Mycoplasma root:Host-associated:Mammals:Digestive system 1.0 genus Mycoplasma root:Host-associated:Human 1.0 genus Mycoplasma root:Engineered:Wastewater:Activated Sludge 1.0 genus Mycoplasma root:Mixed 1.0 @@ -39879,11 +41038,11 @@ genus Mycoplasma root:Environmental:Aquatic:Freshwater 1.0 genus Mycoplasma root:Environmental:Aquatic:Marine:Coastal 1.0 genus Mycoplasma root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Mycoplasma root:Host-associated:Mollusca 1.0 -genus Mycoplasma root:Host-associated:Fish:Digestive system 2.0 +genus Mycoplasma root:Host-associated:Fish:Digestive system 3.0 genus Mycoplasma root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 genus Mycoplasma root:Host-associated:Fish:Digestive system:Foregut 4.0 -genus Mycoplasma root:Host-associated:Reptile:Oral cavity 1.0 genus Mycoplasma root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Mycoplasma root:Host-associated:Reptile:Oral cavity 1.0 genus Mycoplasma root:Host-associated:Fish:Digestive system:Intestine 2.0 genus Mycoplasma root:Engineered:Built environment 1.0 genus Mycoplasma root:Host-associated:Mammals:Respiratory system 1.0 @@ -39902,75 +41061,47 @@ species Clostridiales bacterium CIEAF 016 root:Host-associated:Mammals:Digestive species Ruminococcaceae bacterium root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Ruminococcaceae bacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Ruminococcaceae bacterium root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine:Fecal 50.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine 8.0 -species Ruminococcus sp. A254.MGS-254 root:Engineered:Bioreactor 1.0 -species Ruminococcus sp. A254.MGS-254 root:Engineered:Wastewater:Activated Sludge 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Intestine 1.0 -species Ruminococcus sp. A254.MGS-254 root:Environmental:Terrestrial:Soil 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system:Ceca 2.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system 12.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Animal:Digestive system 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 -species Ruminococcus sp. A254.MGS-254 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Ruminococcus sp. A254.MGS-254 root:Environmental:Terrestrial 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds:Digestive system 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Mammals:Respiratory system 1.0 -species Ruminococcus sp. A254.MGS-254 root:Host-associated:Birds 2.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Large intestine 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system:Intestine 2.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system:Ceca 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Human:Digestive system 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Animal:Digestive system 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Birds:Digestive system 1.0 -species Clostridia bacterium UC5.1-1D10 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bifidobacterium adolescentis root:Host-associated:Mammals:Digestive system:Fecal 2.0 -species Bifidobacterium adolescentis root:Host-associated:Human:Digestive system:Large intestine:Fecal 39.0 +species Bifidobacterium adolescentis root:Host-associated:Human:Digestive system:Large intestine:Fecal 41.0 species Bifidobacterium adolescentis root:Host-associated:Human:Digestive system:Large intestine 4.0 species Bifidobacterium adolescentis root:Engineered:Wastewater:Activated Sludge 2.0 species Bifidobacterium adolescentis root:Engineered:Wastewater 1.0 species Bifidobacterium adolescentis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Bifidobacterium adolescentis root:Host-associated:Human:Digestive system 5.0 species Bifidobacterium adolescentis root:Environmental:Aquatic:Freshwater 1.0 -species Bifidobacterium adolescentis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Bifidobacterium adolescentis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Bifidobacterium adolescentis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Bifidobacterium adolescentis root:Engineered:Wastewater:Water and sludge 1.0 species Bifidobacterium adolescentis root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Bifidobacterium adolescentis root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 species Bifidobacterium longum root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Bifidobacterium longum root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -species Bifidobacterium longum root:Host-associated:Human:Digestive system:Large intestine:Fecal 44.0 +species Bifidobacterium longum root:Host-associated:Human:Digestive system:Large intestine:Fecal 48.0 species Bifidobacterium longum root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Bifidobacterium longum root:Host-associated:Human:Digestive system:Large intestine 4.0 -species Bifidobacterium longum root:Engineered:Food production:Dairy products 1.0 +species Bifidobacterium longum root:Engineered:Food production:Dairy products 2.0 species Bifidobacterium longum root:Host-associated:Plants:Rhizosphere 1.0 -species Bifidobacterium longum root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Bifidobacterium longum root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 species Bifidobacterium longum root:Host-associated:Human:Digestive system 4.0 +species Bifidobacterium longum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bifidobacterium longum root:Engineered:Food production 1.0 species Bifidobacterium longum root:Host-associated 1.0 species Bifidobacterium longum root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 species Bifidobacterium longum root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 +species Bifidobacterium longum root:Engineered:Built environment 1.0 species Bifidobacterium longum root:Environmental:Aquatic:Aquaculture 1.0 species Bifidobacterium longum root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species Coprococcus comes root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Coprococcus comes root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Coprococcus comes root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 species Coprococcus comes root:Host-associated:Human:Digestive system:Large intestine 1.0 species Coprococcus comes root:Host-associated:Human:Digestive system 3.0 +species Coprococcus comes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Ruminococcus callidus root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Ruminococcus callidus root:Host-associated:Human:Digestive system:Large intestine:Fecal 18.0 +species Ruminococcus callidus root:Host-associated:Human:Digestive system:Large intestine:Fecal 21.0 species Ruminococcus callidus root:Host-associated:Human:Digestive system:Large intestine 3.0 species Ruminococcus callidus root:Host-associated:Human:Digestive system 3.0 species Negativibacillus massiliensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Negativibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Negativibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 species Negativibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Negativibacillus massiliensis root:Host-associated:Birds:Digestive system:Ceca 1.0 species Negativibacillus massiliensis root:Host-associated:Human:Digestive system 1.0 @@ -39980,11 +41111,11 @@ species Negativibacillus massiliensis root:Host-associated:Birds:Digestive syste species Negativibacillus massiliensis root:Host-associated:Birds 1.0 order RF32 root:Host-associated:Mammals:Digestive system:Fecal 1.0 order RF32 root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 +order RF32 root:Host-associated:Mammals:Digestive system:Midgut 1.0 order RF32 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 order RF32 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 7.0 order RF32 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order RF32 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -order RF32 root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus [Prevotella] root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus [Prevotella] root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus [Prevotella] root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 @@ -40005,9 +41136,9 @@ species Bacteroides lenta root:Host-associated:Human:Digestive system:Large inte species Bacteroides lenta root:Host-associated:Mammals:Digestive system 2.0 species Bacteroides lenta root:Engineered:Wastewater 2.0 species Bacteroides lenta root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Bacteroides lenta root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacteroides lenta root:Host-associated:Human:Digestive system 1.0 species Bacteroides lenta root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 -species Bacteroides lenta root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacteroides lenta root:Engineered:Modeled 1.0 species Bacteroides lenta root:Host-associated 1.0 species Bacteroides lenta root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 @@ -40025,6 +41156,7 @@ family Mycoplasmataceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 family Mycoplasmataceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Mycoplasmataceae root:Environmental:Aquatic:Marine 1.0 family Mycoplasmataceae root:Host-associated:Fish 1.0 +family Mycoplasmataceae root:Host-associated:Mammals:Digestive system 1.0 family Mycoplasmataceae root:Host-associated:Human 1.0 family Mycoplasmataceae root:Mixed 1.0 family Mycoplasmataceae root:Host-associated:Mammals 3.0 @@ -40033,7 +41165,7 @@ family Mycoplasmataceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Mycoplasmataceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Mycoplasmataceae root:Host-associated 1.0 family Mycoplasmataceae root:Host-associated:Mollusca 1.0 -family Mycoplasmataceae root:Host-associated:Fish:Digestive system 2.0 +family Mycoplasmataceae root:Host-associated:Fish:Digestive system 3.0 family Mycoplasmataceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 family Mycoplasmataceae root:Host-associated:Fish:Digestive system:Foregut 4.0 family Mycoplasmataceae root:Host-associated:Reptile:Oral cavity 1.0 @@ -40047,10 +41179,10 @@ family Mycoplasmataceae root:Host-associated:Birds:Respiratory system 2.0 family Mycoplasmataceae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 family Mycoplasmataceae root:Host-associated:Mollusca:Digestive system:Glands 1.0 genus Veillonella root:Host-associated:Mammals:Digestive system:Fecal 3.0 -genus Veillonella root:Host-associated:Human:Digestive system:Oral:Saliva 21.0 +genus Veillonella root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 genus Veillonella root:Host-associated:Human:Digestive system:Large intestine:Fecal 40.0 genus Veillonella root:Environmental:Aquatic:Marine 1.0 -genus Veillonella root:Host-associated:Mammals:Digestive system 4.0 +genus Veillonella root:Host-associated:Mammals:Digestive system 5.0 genus Veillonella root:Host-associated:Human 10.0 genus Veillonella root:Host-associated:Human:Digestive system:Large intestine 3.0 genus Veillonella root:Host-associated:Human:Skin 6.0 @@ -40061,6 +41193,7 @@ genus Veillonella root:Host-associated:Human:Reproductive system:Vagina 2.0 genus Veillonella root:Host-associated:Human:Digestive system:Oral 52.0 genus Veillonella root:Environmental:Terrestrial:Soil 4.0 genus Veillonella root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Veillonella root:Engineered:Lab enrichment 1.0 genus Veillonella root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Veillonella root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 genus Veillonella root:Host-associated:Human:Digestive system 10.0 @@ -40075,11 +41208,11 @@ genus Veillonella root:Host-associated 1.0 genus Veillonella root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 genus Veillonella root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 genus Veillonella root:Host-associated:Mammals:Gastrointestinal tract 1.0 -genus Veillonella root:Engineered:Lab enrichment 1.0 genus Veillonella root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 genus Veillonella root:Host-associated:Human:Digestive system:Oral:Throat 1.0 genus Veillonella root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 genus Veillonella root:Host-associated:Human:Respiratory system 4.0 +genus Veillonella root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Veillonella root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 genus Veillonella root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 genus Veillonella root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 @@ -40087,6 +41220,7 @@ genus Sphingobacterium root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Sphingobacterium root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Sphingobacterium root:Host-associated:Mammals:Digestive system 1.0 genus Sphingobacterium root:Environmental:Terrestrial:Soil:Forest soil 2.0 +genus Sphingobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Sphingobacterium root:Environmental:Terrestrial:Soil:Agricultural 3.0 genus Sphingobacterium root:Engineered:Bioreactor 6.0 genus Sphingobacterium root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -40100,10 +41234,11 @@ genus Sphingobacterium root:Environmental:Terrestrial:Soil 15.0 genus Sphingobacterium root:Environmental:Aquatic:Marine:Sediment 2.0 genus Sphingobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Sphingobacterium root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +genus Sphingobacterium root:Engineered:Lab enrichment 1.0 genus Sphingobacterium root:Engineered:Lab Synthesis 1.0 +genus Sphingobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Sphingobacterium root:Environmental:Aquatic:Freshwater 1.0 genus Sphingobacterium root:Engineered:Lab enrichment:Defined media 1.0 -genus Sphingobacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Sphingobacterium root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Sphingobacterium root:Engineered:Food production:Fermented seafood 1.0 genus Sphingobacterium root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -40114,9 +41249,9 @@ genus Sphingobacterium root:Engineered:Solid waste 1.0 genus Sphingobacterium root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Sphingobacterium root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 genus Sphingobacterium root:Host-associated:Insecta 1.0 -genus Sphingobacterium root:Engineered:Lab enrichment 1.0 genus Sphingobacterium root:Engineered 1.0 genus Sphingobacterium root:Engineered:Industrial production 1.0 +genus Sphingobacterium root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Sphingobacterium root:Engineered:Biotransformation 2.0 genus Sphingobacterium root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Sphingobacterium root:Environmental:Terrestrial:Soil:Loam 1.0 @@ -40124,7 +41259,7 @@ genus Sphingobacterium root:Environmental:Terrestrial:Volcanic 1.0 species Mycoplasma penetrans root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Mycoplasma penetrans root:Host-associated:Fish:Digestive system:Foregut 1.0 species Lactococcus lactis root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Lactococcus lactis root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +species Lactococcus lactis root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 species Lactococcus lactis root:Environmental:Aquatic:Marine 1.0 species Lactococcus lactis root:Host-associated:Mammals:Digestive system 2.0 species Lactococcus lactis root:Engineered:Wastewater:Activated Sludge 1.0 @@ -40132,7 +41267,8 @@ species Lactococcus lactis root:Host-associated:Human:Skin 2.0 species Lactococcus lactis root:Host-associated:Mammals 2.0 species Lactococcus lactis root:Engineered:Food production:Fermented beverages 1.0 species Lactococcus lactis root:Host-associated:Human:Digestive system:Oral 1.0 -species Lactococcus lactis root:Engineered:Food production:Dairy products 3.0 +species Lactococcus lactis root:Engineered:Food production:Dairy products 4.0 +species Lactococcus lactis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Lactococcus lactis root:Host-associated:Human:Digestive system 1.0 species Lactococcus lactis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Lactococcus lactis root:Engineered:Food production 1.0 @@ -40145,7 +41281,7 @@ species Flavobacterium ummariense root:Host-associated:Mammals:Digestive system: species Flavobacterium ummariense root:Engineered:Bioreactor 2.0 species Synechocystis sp. PCC 7509 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lactobacillus ruminis root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Lactobacillus ruminis root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 +species Lactobacillus ruminis root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 species Lactobacillus ruminis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Lactobacillus ruminis root:Engineered:Wastewater:Activated Sludge 1.0 species Lactobacillus ruminis root:Environmental:Terrestrial:Soil 1.0 @@ -40164,6 +41300,7 @@ species Xanthomonas sp. Mitacek01 root:Host-associated:Mammals:Digestive system: species Dietzia timorensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Deinococcus sp. 2009 root:Host-associated:Mammals:Digestive system:Fecal 1.0 phylum Chytridiomycota root:Host-associated:Mammals:Digestive system:Fecal 1.0 +phylum Chytridiomycota root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine 15.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Oceanic 4.0 @@ -40172,20 +41309,21 @@ phylum Chytridiomycota root:Host-associated:Plants 3.0 phylum Chytridiomycota root:Engineered:Bioreactor 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 phylum Chytridiomycota root:Host-associated:Plants:Rhizosphere 1.0 -phylum Chytridiomycota root:Environmental:Terrestrial:Soil 2.0 +phylum Chytridiomycota root:Environmental:Terrestrial:Soil 3.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Sediment 2.0 phylum Chytridiomycota root:Environmental:Aquatic:Freshwater:Lotic 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Sediment 1.0 phylum Chytridiomycota root:Environmental:Aquatic 1.0 phylum Chytridiomycota root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +phylum Chytridiomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Freshwater 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Coastal 3.0 phylum Chytridiomycota root:Engineered:Solid waste:Composting 1.0 -phylum Chytridiomycota root:Host-associated:Plants:Root 2.0 +phylum Chytridiomycota root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +phylum Chytridiomycota root:Host-associated:Plants:Root 3.0 phylum Chytridiomycota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Chytridiomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Estuary 6.0 phylum Chytridiomycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Chytridiomycota root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -40193,27 +41331,55 @@ phylum Chytridiomycota root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 phylum Chytridiomycota root:Environmental:Aquatic:Freshwater:Ice 1.0 +phylum Chytridiomycota root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Chytridiomycota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Chytridiomycota root:Environmental:Air 1.0 +phylum Chytridiomycota root:Host-associated:Fungi 1.0 +phylum Chytridiomycota root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Neocallimastigomycetes root:Host-associated:Mammals:Digestive system:Fecal 1.0 +class Neocallimastigomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +class Neocallimastigomycetes root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Neocallimastigales root:Host-associated:Mammals:Digestive system:Fecal 1.0 +order Neocallimastigales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +order Neocallimastigales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 family Neocallimastigaceae root:Host-associated:Mammals:Digestive system:Fecal 1.0 +family Neocallimastigaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 genus Cyllamyces root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Piromyces root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Cyllamyces aberensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Piromyces finnis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Piromyces sp. PGL01 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bacteroidales bacterium Bact 22 root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Bacteroidales bacterium Bact 22 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Bacteroidales bacterium Bact 22 root:Host-associated:Animal:Digestive system 1.0 -species Medicago sativa root:Host-associated:Mammals:Digestive system:Fecal 4.0 +species Medicago sativa root:Host-associated:Mammals:Digestive system:Fecal 5.0 species Medicago sativa root:Host-associated:Birds:Digestive system:Fecal 1.0 species Medicago sativa root:Host-associated:Mammals:Digestive system 1.0 species Medicago sativa root:Environmental:Terrestrial:Geologic 1.0 +species Medicago sativa root:Host-associated:Mammals 1.0 +species Medicago sativa root:Engineered:Food production:Fermented beverages 1.0 +species Medicago sativa root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Medicago sativa root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Medicago sativa root:Host-associated:Mammals:Gastrointestinal tract 1.0 +species Medicago sativa root:Engineered:Built environment 1.0 +species Lachnospiraceae bacterium RM46 root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Blautia hydrogenotrophica root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Intestine 1.0 +species Blautia hydrogenotrophica root:Engineered:Lab enrichment 1.0 +species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system 2.0 +species Blautia hydrogenotrophica root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +species Blautia hydrogenotrophica root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +species Blautia hydrogenotrophica root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 +species Blautia hydrogenotrophica root:Host-associated:Animal:Digestive system:Fecal 1.0 +species Cellulosilyticum ruminicola root:Host-associated:Mammals:Digestive system:Fecal 2.0 +species Cellulosilyticum ruminicola root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Clostridiales bacterium canine oral taxon 141 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Ruminococcaceae bacterium NK4B32 root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Ruminococcaceae bacterium NK4B32 root:Host-associated:Mammals:Digestive system 1.0 +species Ruminococcaceae bacterium NK4B32 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Peptostreptococcus sp. root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Fusobacterium equinum root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Actinobacillus equuli root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -40230,6 +41396,8 @@ species Clostridiales bacterium NK3B98 root:Environmental:Aquatic:Marine:Interti species Pseudomonas sp. 108Z1 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Pseudomonas sp. 108Z1 root:Host-associated:Mammals:Digestive system 1.0 species Pseudomonas sp. 108Z1 root:Host-associated:Mammals:Gastrointestinal tract 1.0 +species Pseudomonas sp. 108Z1 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 +species Pseudomonas sp. 108Z1 root:Host-associated:Insecta 1.0 species Pseudomonas sp. 108Z1 root:Engineered:Biogas plant 1.0 species Pseudomonas sp. 108Z1 root:Host-associated:Mammals:Skin 1.0 species Fibrobacter succinogenes root:Host-associated:Mammals:Digestive system:Fecal 4.0 @@ -40249,12 +41417,12 @@ genus Odoribacter root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Odoribacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 genus Odoribacter root:Host-associated:Mammals:Digestive system 4.0 genus Odoribacter root:Host-associated:Mammals 1.0 +genus Odoribacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Odoribacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Odoribacter root:Host-associated:Human:Digestive system 1.0 genus Odoribacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 10.0 genus Odoribacter root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -genus Odoribacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Odoribacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Odoribacter root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Odoribacter root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 genus Ruminiclostridium root:Host-associated:Mammals:Digestive system:Fecal 4.0 genus Ruminiclostridium root:Host-associated:Birds:Digestive system:Fecal 2.0 @@ -40264,6 +41432,7 @@ genus Ruminiclostridium root:Host-associated:Human:Digestive system:Large intest genus Ruminiclostridium root:Engineered:Bioreactor 16.0 genus Ruminiclostridium root:Engineered:Wastewater:Activated Sludge 3.0 genus Ruminiclostridium root:Host-associated:Human:Skin 1.0 +genus Ruminiclostridium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Ruminiclostridium root:Engineered:Biogas plant:Wet fermentation 2.0 genus Ruminiclostridium root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Ruminiclostridium root:Host-associated:Human:Digestive system 2.0 @@ -40276,6 +41445,7 @@ genus Ruminiclostridium root:Engineered:Wastewater:Water and sludge 1.0 genus Ruminiclostridium root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Ruminiclostridium root:Engineered:Biogas plant 2.0 genus Ruminiclostridium root:Host-associated:Mammals:Respiratory system 2.0 +genus Ruminiclostridium root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Ruminiclostridium root:Host-associated:Human:Circulatory system 1.0 genus Ruminiclostridium root:Environmental:Aquatic:Marine:Wetlands 1.0 species Bacteroides sp. I48 root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -40283,10 +41453,10 @@ species Bacteroides sp. I48 root:Host-associated:Mammals:Digestive system 1.0 species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system 2.0 species Bacteroides acidifaciens root:Host-associated:Mammals 1.0 -species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 +species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides acidifaciens root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides acidifaciens root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Sutterellaceae bacterium YL45 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species [Clostridium] leptum root:Host-associated:Mammals:Digestive system:Fecal 5.0 @@ -40300,6 +41470,7 @@ species [Clostridium] leptum root:Host-associated:Mammals:Digestive system:Large species [Clostridium] leptum root:Host-associated:Animal:Digestive system 1.0 species [Clostridium] leptum root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species [Clostridium] leptum root:Host-associated:Mammals:Skin 2.0 +species [Clostridium] leptum root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Lactobacillus sp. C30An8 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lactobacillus sp. C30An8 root:Host-associated:Human:Reproductive system:Vagina 1.0 species Bacteroides helcogenes root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -40324,6 +41495,7 @@ species Dubosiella newyorkensis root:Mixed 1.0 species Dubosiella newyorkensis root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 species Dubosiella newyorkensis root:Environmental:Terrestrial:Soil 1.0 species Dubosiella newyorkensis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Dubosiella newyorkensis root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Dubosiella newyorkensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Dubosiella newyorkensis root:Host-associated:Insecta 1.0 species Dubosiella newyorkensis root:Host-associated:Mammals:Respiratory system 1.0 @@ -40339,19 +41511,21 @@ species Blautia coccoides root:Host-associated:Mammals:Digestive system 1.0 species Blautia coccoides root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Blautia coccoides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 species Blautia coccoides root:Host-associated:Animal:Digestive system 1.0 +species Blautia coccoides root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Digestive system 1.0 -species Bacteroidales bacterium WCE2004 root:Mixed 1.0 +species Bacteroidales bacterium WCE2004 root:Mixed 2.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals 1.0 +species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 -species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Animal:Digestive system 1.0 -species Bacteroidales bacterium WCE2004 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Bacteroidales bacterium WCE2004 root:Host-associated:Birds:Digestive system 1.0 species Methanobrevibacter sp. YE315 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Methanobrevibacter sp. YE315 root:Mixed 1.0 species Methanobrevibacter sp. YE315 root:Host-associated:Mammals 1.0 species Methanobrevibacter sp. YE315 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 -species Methanobrevibacter sp. YE315 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +species Methanobrevibacter sp. YE315 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 species Methanocorpusculum labreanum root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Methanocorpusculum labreanum root:Host-associated:Mammals 1.0 species Methanocorpusculum labreanum root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -40361,11 +41535,15 @@ species Firmicutes bacterium ADurb.Bin419 root:Host-associated:Mammals:Digestive species Firmicutes bacterium ADurb.Bin419 root:Host-associated:Mammals 1.0 species Ruminococcaceae bacterium YAD3003 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Ruminococcaceae bacterium YAD3003 root:Host-associated:Mammals 1.0 +species Ruminococcaceae bacterium YAD3003 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Clostridium sp. CAG:302 root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Clostridium sp. CAG:302 root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +species Clostridium sp. CAG:302 root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +species Clostridium sp. CAG:302 root:Mixed 2.0 species Clostridium sp. CAG:302 root:Host-associated:Mammals 1.0 species Clostridium sp. CAG:302 root:Engineered:Wastewater 1.0 species Clostridium sp. CAG:302 root:Host-associated:Human:Digestive system 4.0 +species Clostridium sp. CAG:302 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Clostridium sp. CAG:302 root:Engineered:Wastewater:Water and sludge 1.0 species Clostridium sp. CAG:302 root:Host-associated:Birds:Digestive system 1.0 genus Cardiobacterium root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Cardiobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 @@ -40389,7 +41567,7 @@ species Bifidobacterium aeriphila root:Host-associated:Mammals:Digestive system: species Bifidobacterium aeriphila root:Host-associated:Human:Digestive system:Hindgut:Rectum 1.0 species Faecalibacterium prausnitzii root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Faecalibacterium prausnitzii root:Host-associated:Birds:Digestive system:Fecal 4.0 -species Faecalibacterium prausnitzii root:Host-associated:Human:Digestive system:Large intestine:Fecal 72.0 +species Faecalibacterium prausnitzii root:Host-associated:Human:Digestive system:Large intestine:Fecal 74.0 species Faecalibacterium prausnitzii root:Host-associated:Human 1.0 species Faecalibacterium prausnitzii root:Host-associated:Human:Digestive system:Large intestine 6.0 species Faecalibacterium prausnitzii root:Host-associated:Human:Digestive system:Intestine 2.0 @@ -40424,7 +41602,7 @@ species Lutispora tyrobutyricum root:Host-associated:Human:Digestive system:Hind species Lutispora tyrobutyricum root:Host-associated:Mammals:Milk 1.0 species Niameybacter massiliensis root:Host-associated:Mammals:Digestive system:Fecal 4.0 species Niameybacter massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 -species Niameybacter massiliensis root:Host-associated:Mammals:Digestive system 2.0 +species Niameybacter massiliensis root:Host-associated:Mammals:Digestive system 3.0 species Niameybacter massiliensis root:Mixed 1.0 species Niameybacter massiliensis root:Host-associated:Mammals:Gastrointestinal tract 1.0 species Niameybacter massiliensis root:Host-associated:Reptile 1.0 @@ -40433,6 +41611,7 @@ genus Morganella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Morganella root:Host-associated:Plants 1.0 genus Morganella root:Engineered:Food production:Dairy products 1.0 genus Morganella root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Morganella root:Host-associated:Insecta:Digestive system 1.0 genus Morganella root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Morganella root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 species Veillonella parvula root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -40474,6 +41653,7 @@ class 4C0d-2 root:Host-associated:Human:Digestive system:Large intestine:Fecal 8 class 4C0d-2 root:Engineered:Bioreactor 1.0 class 4C0d-2 root:Engineered:Food production:Dairy products 1.0 class 4C0d-2 root:Environmental:Terrestrial:Soil 1.0 +class 4C0d-2 root:Host-associated:Mammals:Digestive system:Midgut 1.0 class 4C0d-2 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 class 4C0d-2 root:Host-associated:Birds:Digestive system:Ceca 1.0 class 4C0d-2 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 11.0 @@ -40490,12 +41670,12 @@ class 4C0d-2 root:Engineered:Built environment 1.0 class 4C0d-2 root:Host-associated:Birds 2.0 class 4C0d-2 root:Engineered 1.0 class 4C0d-2 root:Host-associated:Plants:Rhizome 1.0 -class 4C0d-2 root:Host-associated:Mammals:Digestive system:Midgut 1.0 class 4C0d-2 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 class 4C0d-2 root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 order YS2 root:Host-associated:Mammals:Digestive system:Fecal 2.0 order YS2 root:Host-associated:Birds:Digestive system:Fecal 2.0 order YS2 root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +order YS2 root:Host-associated:Mammals:Digestive system:Midgut 1.0 order YS2 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 order YS2 root:Environmental:Terrestrial:Soil:Grasslands 1.0 order YS2 root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -40506,13 +41686,14 @@ order YS2 root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 order YS2 root:Host-associated:Mammals:Digestive system:Large intestine 3.0 order YS2 root:Engineered:Wastewater:Water and sludge 2.0 order YS2 root:Host-associated:Birds 1.0 -order YS2 root:Host-associated:Mammals:Digestive system:Midgut 1.0 order YS2 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 order RF39 root:Host-associated:Mammals:Digestive system:Fecal 3.0 order RF39 root:Host-associated:Birds:Digestive system:Fecal 4.0 order RF39 root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 order RF39 root:Host-associated:Mammals:Digestive system 1.0 order RF39 root:Engineered:Bioreactor 1.0 +order RF39 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order RF39 root:Host-associated:Mammals:Digestive system:Midgut 2.0 order RF39 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 8.0 order RF39 root:Environmental:Terrestrial:Soil:Grasslands 1.0 order RF39 root:Host-associated:Birds:Digestive system:Ceca 2.0 @@ -40521,10 +41702,8 @@ order RF39 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 order RF39 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 order RF39 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 order RF39 root:Host-associated 3.0 -order RF39 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order RF39 root:Engineered:Bioreactor:Continuous culture 1.0 order RF39 root:Host-associated:Birds 1.0 -order RF39 root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Anaerofustis root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Anaerofustis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 genus Anaerofustis root:Host-associated:Mammals:Digestive system 1.0 @@ -40540,7 +41719,7 @@ species Turicibacter garvieae root:Host-associated:Mammals:Digestive system:Larg species Turicibacter garvieae root:Engineered:Food production 1.0 species Turicibacter garvieae root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 species Prevotella pallens root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Prevotella pallens root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 +species Prevotella pallens root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 species Prevotella pallens root:Host-associated:Human:Digestive system:Oral 3.0 species Prevotella pallens root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 species Prevotella pallens root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 @@ -40581,9 +41760,9 @@ species Lachnospiraceae bacterium DW17 root:Host-associated:Mammals:Digestive sy family Turicibacteraceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 family Turicibacteraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 family Turicibacteraceae root:Engineered:Food production:Dairy products 1.0 +family Turicibacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Turicibacteraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Turicibacteraceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -family Turicibacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Turicibacteraceae root:Host-associated:Birds:Digestive system:Digestive tube 1.0 genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Fecal 2.0 genus Pseudoramibacter Eubacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 @@ -40593,13 +41772,13 @@ genus Pseudoramibacter Eubacterium root:Host-associated:Mammals 1.0 genus Pseudoramibacter Eubacterium root:Engineered:Food production:Dairy products 1.0 genus Pseudoramibacter Eubacterium root:Host-associated:Plants:Rhizosphere 1.0 genus Pseudoramibacter Eubacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Midgut 2.0 genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 genus Pseudoramibacter Eubacterium root:Host-associated 2.0 genus Pseudoramibacter Eubacterium root:Host-associated:Reptile 1.0 genus Pseudoramibacter Eubacterium root:Host-associated:Birds 1.0 -genus Pseudoramibacter Eubacterium root:Host-associated:Mammals:Digestive system:Midgut 2.0 species Turicibacter iners root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Blvii28 pseudolongum root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Blvii28 pseudolongum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -40650,22 +41829,22 @@ species Clostridium sp. ASF502 root:Environmental:Aquatic:Marine 1.0 species Ruminococcus sp. CE2 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Ruminococcus sp. CE2 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Fecal 2.0 -family Succinivibrionaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +family Succinivibrionaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 family Succinivibrionaceae root:Host-associated:Mammals:Digestive system 3.0 family Succinivibrionaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Succinivibrionaceae root:Mixed 1.0 family Succinivibrionaceae root:Host-associated:Mammals 2.0 family Succinivibrionaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Succinivibrionaceae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 +family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 10.0 family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 -family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +family Succinivibrionaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 family Succinivibrionaceae root:Host-associated 1.0 family Succinivibrionaceae root:Host-associated:Mammals:Respiratory system 1.0 family Succinivibrionaceae root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 family Succinivibrionaceae root:Host-associated:Mammals:Excretory system 1.0 genus Succinivibrio root:Host-associated:Mammals:Digestive system:Fecal 5.0 -genus Succinivibrio root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +genus Succinivibrio root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 genus Succinivibrio root:Environmental:Aquatic:Marine 2.0 genus Succinivibrio root:Host-associated:Mammals:Digestive system 2.0 genus Succinivibrio root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -40690,6 +41869,7 @@ genus Cerasicoccus root:Host-associated:Porifera 2.0 genus Cerasicoccus root:Environmental:Aquatic:Marine:Coastal 1.0 genus Cerasicoccus root:Engineered:Solid waste:Composting 1.0 species Roseburia sp. 499 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Roseburia sp. 499 root:Host-associated:Mammals:Digestive system 1.0 species Roseburia sp. 499 root:Engineered:Biogas plant:Wet fermentation 1.0 species Firmicutes bacterium CAG:822 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Firmicutes bacterium CAG:822 root:Host-associated:Birds:Digestive system:Fecal 2.0 @@ -40700,7 +41880,7 @@ species Firmicutes bacterium CAG:822 root:Host-associated:Animal:Digestive syste species Firmicutes bacterium CAG:822 root:Host-associated:Birds:Digestive system 1.0 species Firmicutes bacterium CAG:822 root:Host-associated:Birds 1.0 species [Eubacterium] siraeum root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species [Eubacterium] siraeum root:Host-associated:Human:Digestive system:Large intestine:Fecal 12.0 +species [Eubacterium] siraeum root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 species [Eubacterium] siraeum root:Host-associated:Human:Digestive system:Large intestine 1.0 species [Eubacterium] siraeum root:Host-associated:Human:Digestive system:Intestine 1.0 species [Eubacterium] siraeum root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -40748,12 +41928,14 @@ species Rhodocista sp. SCSIO 13435 root:Environmental:Aquatic 1.0 species Rhodocista sp. SCSIO 13435 root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Selenomonadaceae root:Host-associated:Mammals:Digestive system:Fecal 3.0 family Selenomonadaceae root:Host-associated:Birds:Digestive system:Fecal 2.0 -family Selenomonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +family Selenomonadaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 +family Selenomonadaceae root:Environmental:Aquatic:Marine 1.0 family Selenomonadaceae root:Host-associated:Mammals:Digestive system 1.0 family Selenomonadaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Selenomonadaceae root:Engineered:Wastewater 1.0 family Selenomonadaceae root:Host-associated:Human:Digestive system:Oral 3.0 family Selenomonadaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Selenomonadaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Selenomonadaceae root:Environmental:Aquatic:Sediment 1.0 family Selenomonadaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 family Selenomonadaceae root:Host-associated:Birds:Digestive system:Ceca 2.0 @@ -40765,15 +41947,15 @@ family Selenomonadaceae root:Host-associated:Mammals:Digestive system:Foregut:Ru family Selenomonadaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 family Selenomonadaceae root:Host-associated:Animal:Digestive system 2.0 family Selenomonadaceae root:Host-associated:Insecta:Digestive system 1.0 -family Selenomonadaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 family Selenomonadaceae root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 family Selenomonadaceae root:Host-associated:Birds:Digestive system 1.0 family Selenomonadaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 +family Selenomonadaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Anaerovibrio root:Host-associated:Mammals:Digestive system:Fecal 6.0 genus Anaerovibrio root:Host-associated:Mammals:Digestive system 1.0 genus Anaerovibrio root:Mixed 1.0 -genus Anaerovibrio root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Anaerovibrio root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Anaerovibrio root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Anaerovibrio root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 genus Anaerovibrio root:Host-associated:Mammals:Excretory system 1.0 species Mycoplasma sualvi root:Host-associated:Mammals:Digestive system:Fecal 2.0 @@ -40784,20 +41966,21 @@ family Corynebacteriaceae root:Host-associated:Mammals:Digestive system:Fecal 1. family Corynebacteriaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 family Corynebacteriaceae root:Host-associated:Birds:Digestive system:Fecal 4.0 family Corynebacteriaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 -family Corynebacteriaceae root:Environmental:Aquatic:Marine 1.0 +family Corynebacteriaceae root:Environmental:Aquatic:Marine 2.0 family Corynebacteriaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Corynebacteriaceae root:Host-associated:Mammals:Digestive system 1.0 family Corynebacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Corynebacteriaceae root:Host-associated:Human 8.0 family Corynebacteriaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 family Corynebacteriaceae root:Engineered:Bioreactor 7.0 +family Corynebacteriaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Corynebacteriaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Corynebacteriaceae root:Host-associated:Human:Skin 28.0 family Corynebacteriaceae root:Mixed 8.0 family Corynebacteriaceae root:Host-associated:Mammals 4.0 -family Corynebacteriaceae root:Engineered:Food production:Fermented beverages 1.0 +family Corynebacteriaceae root:Engineered:Food production:Fermented beverages 2.0 family Corynebacteriaceae root:Host-associated:Human:Reproductive system:Vagina 2.0 -family Corynebacteriaceae root:Host-associated:Human:Digestive system:Oral 18.0 +family Corynebacteriaceae root:Host-associated:Human:Digestive system:Oral 19.0 family Corynebacteriaceae root:Engineered:Food production:Dairy products 6.0 family Corynebacteriaceae root:Environmental:Terrestrial:Soil 2.0 family Corynebacteriaceae root:Environmental:Aquatic:Marine:Sediment 8.0 @@ -40819,7 +42002,7 @@ family Corynebacteriaceae root:Host-associated:Human:Skin:Naris 1.0 family Corynebacteriaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 3.0 family Corynebacteriaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Corynebacteriaceae root:Engineered:Wastewater:Industrial wastewater 1.0 -family Corynebacteriaceae root:Host-associated:Insecta:Digestive system 1.0 +family Corynebacteriaceae root:Host-associated:Insecta:Digestive system 2.0 family Corynebacteriaceae root:Host-associated 2.0 family Corynebacteriaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Corynebacteriaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 @@ -40857,6 +42040,7 @@ species Citrobacter sp. root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Alistipes finegoldii root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Alistipes finegoldii root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 species Alistipes finegoldii root:Host-associated:Mammals:Digestive system 2.0 +species Alistipes finegoldii root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Alistipes finegoldii root:Host-associated:Human:Digestive system 2.0 species Alistipes finegoldii root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Alistipes finegoldii root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 @@ -40872,25 +42056,28 @@ species Rikenella indistinctus root:Host-associated:Mammals:Digestive system:Lar species Rikenella indistinctus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Desulfonatronum retbaense root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Neisseriales root:Host-associated:Mammals:Digestive system:Fecal 1.0 -order Neisseriales root:Host-associated:Human:Digestive system:Oral:Saliva 25.0 +order Neisseriales root:Host-associated:Human:Digestive system:Oral:Saliva 26.0 order Neisseriales root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 order Neisseriales root:Environmental:Aquatic:Marine 1.0 order Neisseriales root:Host-associated:Fish 1.0 -order Neisseriales root:Host-associated:Human 9.0 +order Neisseriales root:Host-associated:Human 10.0 order Neisseriales root:Host-associated:Plants 1.0 order Neisseriales root:Engineered:Wastewater:Activated Sludge 1.0 order Neisseriales root:Host-associated:Human:Skin 13.0 order Neisseriales root:Mixed 1.0 +order Neisseriales root:Engineered:Food production:Fermented beverages 1.0 order Neisseriales root:Engineered:Wastewater 3.0 order Neisseriales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral 58.0 order Neisseriales root:Engineered:Food production:Dairy products 1.0 order Neisseriales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Neisseriales root:Environmental:Terrestrial:Soil 2.0 -order Neisseriales root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +order Neisseriales root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 order Neisseriales root:Environmental:Aquatic:Sediment 1.0 +order Neisseriales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Neisseriales root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 +order Neisseriales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Neisseriales root:Host-associated:Human:Digestive system 7.0 order Neisseriales root:Environmental:Aquatic:Freshwater 2.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 @@ -40901,7 +42088,6 @@ order Neisseriales root:Host-associated:Human:Digestive system:Oral:Subgingival order Neisseriales root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 order Neisseriales root:Engineered:Lab enrichment:Defined media 1.0 order Neisseriales root:Engineered:Food production 3.0 -order Neisseriales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Neisseriales root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 order Neisseriales root:Host-associated:Human:Skin:Naris 1.0 order Neisseriales root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 @@ -40910,13 +42096,14 @@ order Neisseriales root:Engineered:Modeled 2.0 order Neisseriales root:Host-associated:Insecta:Digestive system 1.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 order Neisseriales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order Neisseriales root:Engineered:Wastewater:Water and sludge 3.0 +order Neisseriales root:Engineered:Wastewater:Water and sludge 5.0 order Neisseriales root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 order Neisseriales root:Host-associated:Insecta 3.0 order Neisseriales root:Engineered:Built environment 2.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 order Neisseriales root:Host-associated:Human:Digestive system:Oral:Throat 1.0 order Neisseriales root:Host-associated:Arthropoda 1.0 +order Neisseriales root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order Neisseriales root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 order Neisseriales root:Host-associated:Human:Respiratory system 3.0 order Neisseriales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 @@ -40960,9 +42147,9 @@ genus 02d06 root:Engineered:Food production:Dairy products 3.0 genus 02d06 root:Environmental:Terrestrial:Soil 2.0 genus 02d06 root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus 02d06 root:Engineered:Biogas plant:Wet fermentation 1.0 +genus 02d06 root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus 02d06 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 5.0 genus 02d06 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 -genus 02d06 root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus 02d06 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus 02d06 root:Engineered:Modeled 2.0 genus 02d06 root:Engineered:Wastewater:Water and sludge 2.0 @@ -41049,28 +42236,32 @@ species Paraphelidium tribonemae root:Environmental:Aquatic:Freshwater 1.0 species Paraphelidium tribonemae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Paraphelidium tribonemae root:Host-associated:Plants:Root 1.0 species Paraphelidium tribonemae root:Engineered:Built environment 2.0 +species Paraphelidium tribonemae root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Clostridiales bacterium Firm 08 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Clostridiales bacterium Firm 08 root:Host-associated:Mammals:Digestive system 1.0 species Eubacterium oxidoreducens root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Eubacterium oxidoreducens root:Host-associated:Mammals:Digestive system 1.0 class Litostomatea root:Host-associated:Mammals:Digestive system:Fecal 1.0 +class Litostomatea root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 class Litostomatea root:Environmental:Aquatic:Marine 19.0 class Litostomatea root:Environmental:Aquatic:Marine:Oceanic 2.0 class Litostomatea root:Host-associated:Mammals:Digestive system 1.0 class Litostomatea root:Environmental:Aquatic:Marine:Sediment 5.0 +class Litostomatea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Litostomatea root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Litostomatea root:Environmental:Aquatic 1.0 +class Litostomatea root:Host-associated:Mammals:Digestive system:Midgut 1.0 class Litostomatea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 class Litostomatea root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class Litostomatea root:Environmental:Aquatic:Marine:Coastal 1.0 class Litostomatea root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 class Litostomatea root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 class Litostomatea root:Host-associated:Animal:Digestive system 1.0 -class Litostomatea root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 class Litostomatea root:Host-associated:Birds:Digestive system 1.0 class Litostomatea root:Host-associated:Animal:Digestive system:Fecal 1.0 order Entodiniomorphida root:Host-associated:Mammals:Digestive system:Fecal 1.0 order Entodiniomorphida root:Host-associated:Mammals:Digestive system 1.0 +order Entodiniomorphida root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Entodiniomorphida root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 order Entodiniomorphida root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 order Entodiniomorphida root:Host-associated:Animal:Digestive system 1.0 @@ -41102,11 +42293,13 @@ genus Paraprevotella root:Host-associated 1.0 genus Paraprevotella root:Environmental:Terrestrial:Soil:Sand 1.0 genus Paraprevotella root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Fusicatenibacter root:Host-associated:Mammals:Digestive system:Fecal 1.0 -genus Fusicatenibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +genus Fusicatenibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 genus Fusicatenibacter root:Host-associated:Human 1.0 genus Fusicatenibacter root:Engineered:Bioreactor 1.0 +genus Fusicatenibacter root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Fusicatenibacter root:Host-associated:Human:Digestive system 1.0 genus Fusicatenibacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +genus Fusicatenibacter root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Fusicatenibacter root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Bacteroides massiliensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bacteroides massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -41146,9 +42339,9 @@ genus SMB53 root:Engineered:Biogas plant 1.0 genus SMB53 root:Host-associated:Mammals:Milk 1.0 genus rc4-4 root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus rc4-4 root:Host-associated:Mammals:Digestive system 1.0 +genus rc4-4 root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus rc4-4 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus rc4-4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus rc4-4 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Halothiobacillus benthica root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lutispora ethanoligenes root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lutispora ethanoligenes root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 @@ -41180,12 +42373,12 @@ genus Solirubrobacter root:Mixed 2.0 genus Solirubrobacter root:Engineered:Wastewater 1.0 genus Solirubrobacter root:Environmental:Terrestrial:Soil:Contaminated 2.0 genus Solirubrobacter root:Host-associated:Plants:Rhizosphere 4.0 -genus Solirubrobacter root:Environmental:Terrestrial:Soil 9.0 +genus Solirubrobacter root:Environmental:Terrestrial:Soil 10.0 genus Solirubrobacter root:Environmental:Aquatic:Sediment 1.0 genus Solirubrobacter root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Solirubrobacter root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Solirubrobacter root:Environmental:Terrestrial:Soil:Desert 2.0 genus Solirubrobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Solirubrobacter root:Environmental:Terrestrial:Soil:Desert 2.0 genus Solirubrobacter root:Engineered:Biogas plant 1.0 species Pseudoramibacter Eubacterium subterminale root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Rheinheimera homiensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -41213,9 +42406,9 @@ phylum WPS-2 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 phylum WPS-2 root:Environmental:Terrestrial:Soil:Wetlands 1.0 phylum WPS-2 root:Environmental:Terrestrial:Soil:Grasslands 1.0 phylum WPS-2 root:Host-associated:Birds:Digestive system:Ceca 1.0 +phylum WPS-2 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum WPS-2 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 phylum WPS-2 root:Host-associated:Plants:Root 1.0 -phylum WPS-2 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum WPS-2 root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 phylum WPS-2 root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 phylum WPS-2 root:Environmental:Aquatic:Freshwater:Ice 1.0 @@ -41248,8 +42441,8 @@ species Streptococcus paramesenteroides root:Host-associated:Mammals:Excretory s species Lactobacillus casseliflavus root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lactobacillus casseliflavus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus casseliflavus root:Engineered:Food production:Dairy products 1.0 -species Lactobacillus casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Lactobacillus casseliflavus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Lactobacillus casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Lactobacillus casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Lactobacillus casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 species Lactobacillus casseliflavus root:Host-associated:Mammals:Excretory system 1.0 @@ -41265,6 +42458,8 @@ species Megasphaera hypermegale root:Host-associated:Mammals:Excretory system 1. species Anaerovibrio termitidis root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Anaerovibrio termitidis root:Host-associated:Mammals:Excretory system 1.0 species Ruminococcus sp. NK3A76 root:Host-associated:Mammals:Digestive system:Fecal 1.0 +species Ruminococcus sp. NK3A76 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Ruminococcus sp. NK3A76 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Ruminococcus sp. NK3A76 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 genus Peptoclostridium root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Peptoclostridium root:Host-associated:Mammals:Digestive system 1.0 @@ -41277,23 +42472,17 @@ genus Peptoclostridium root:Host-associated:Animal:Digestive system 1.0 genus Peptoclostridium root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Megamonas root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Megamonas root:Host-associated:Birds:Digestive system:Fecal 2.0 -genus Megamonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 +genus Megamonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 genus Megamonas root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Megamonas root:Engineered:Lab enrichment 1.0 genus Megamonas root:Host-associated:Birds:Digestive system:Ceca 2.0 genus Megamonas root:Host-associated:Human:Digestive system 2.0 genus Megamonas root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 genus Megamonas root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Megamonas root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 6.0 genus Megamonas root:Host-associated:Animal:Digestive system 1.0 -genus Megamonas root:Engineered:Lab enrichment 1.0 genus Megamonas root:Host-associated:Animal:Digestive system:Fecal 1.0 genus Megamonas root:Engineered 1.0 -species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system 1.0 -species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Allobaculum stercoricanis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Allobaculum stercoricanis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 -species Allobaculum stercoricanis root:Host-associated:Animal:Digestive system:Fecal 2.0 species Bacteroides caecigallinarum root:Host-associated:Mammals:Digestive system:Fecal 2.0 species Bacteroides caecigallinarum root:Host-associated:Birds:Digestive system:Fecal 6.0 species Bacteroides caecigallinarum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -41314,14 +42503,15 @@ species Blautia glucerasea root:Host-associated:Human:Digestive system:Large int species Blautia glucerasea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Blautia glucerasea root:Host-associated:Human:Respiratory system 1.0 species Bacteroides coprocola root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Bacteroides coprocola root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 +species Bacteroides coprocola root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 species Bacteroides coprocola root:Host-associated:Human:Digestive system:Intestine 1.0 species Bacteroides coprocola root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacteroides coprocola root:Environmental:Aquatic:Sediment 1.0 +species Bacteroides coprocola root:Engineered:Lab enrichment 1.0 species Bacteroides coprocola root:Host-associated:Human:Digestive system 4.0 species Bacteroides coprocola root:Host-associated:Human:Reproductive system:Female 1.0 species Bacteroides coprocola root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 2.0 -species Bacteroides coprocola root:Engineered:Lab enrichment 1.0 +species Bacteroides coprocola root:Engineered:Built environment 1.0 species Bacteroides coprocola root:Host-associated:Animal:Digestive system:Fecal 2.0 species Blautia hansenii root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Bifidobacterium choerinum root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -41329,8 +42519,8 @@ species Pseudobutyrivibrio sp. CA38 root:Host-associated:Mammals:Digestive syste species Pseudobutyrivibrio sp. CA38 root:Host-associated:Mammals:Digestive system 1.0 species Lachnospiraceae bacterium NK4A136 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Paludibacter jiangxiensis root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Paludibacter jiangxiensis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Paludibacter jiangxiensis root:Engineered:Lab enrichment 1.0 +species Paludibacter jiangxiensis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Oribacterium sp. NK2B42 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Butyrivibrio fibrisolvens root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Prevotella sp. KH2C16 root:Host-associated:Mammals:Digestive system:Fecal 1.0 @@ -41351,6 +42541,7 @@ genus Clostridioides root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Clostridioides root:Engineered:Solid waste:Composting 3.0 species Lachnospiraceae bacterium DW11 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Lachnospiraceae bacterium DW11 root:Host-associated:Mammals:Digestive system 1.0 +species Lachnospiraceae bacterium DW11 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Lachnospiraceae bacterium DW11 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Clostridium sp. Culture Jar-19 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Clostridium sp. Culture Jar-19 root:Host-associated:Mammals:Digestive system 3.0 @@ -41371,7 +42562,7 @@ species Parabacteroides goldsteinii root:Host-associated:Mammals:Digestive syste species Clostridiales bacterium KB18 root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Acidaminococcus root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Acidaminococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -genus Acidaminococcus root:Host-associated:Mammals:Digestive system 1.0 +genus Acidaminococcus root:Host-associated:Mammals:Digestive system 2.0 genus Acidaminococcus root:Engineered:Bioreactor 1.0 genus Acidaminococcus root:Environmental:Terrestrial:Soil 1.0 genus Acidaminococcus root:Engineered:Lab enrichment 1.0 @@ -41385,6 +42576,7 @@ genus Terrisporobacter root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Terrisporobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Terrisporobacter root:Engineered:Bioreactor 1.0 genus Terrisporobacter root:Mixed 1.0 +genus Terrisporobacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Terrisporobacter root:Host-associated:Human:Digestive system 1.0 genus Terrisporobacter root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Terrisporobacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -41395,14 +42587,11 @@ species bacterium YE64 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species bacterium YE64 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 genus Quinella root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Quinella root:Host-associated:Mammals:Digestive system 1.0 -genus Quinella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +genus Quinella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Cellulosilyticum root:Host-associated:Mammals:Digestive system:Fecal 1.0 genus Cellulosilyticum root:Engineered:Bioreactor 1.0 genus Cellulosilyticum root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Cellulosilyticum root:Host-associated:Annelida:Digestive system 1.0 -species Cellulosilyticum ruminicola root:Host-associated:Mammals:Digestive system:Fecal 1.0 -species Cellulosilyticum ruminicola root:Host-associated:Mammals:Gastrointestinal tract 1.0 -species Lachnospiraceae bacterium RM46 root:Host-associated:Mammals:Digestive system:Fecal 1.0 species Mariniflexile ostreae root:Host-associated:Mammals:Digestive system:Fecal 1.0 species rainbow trout intestinal bacterium A105 root:Host-associated:Mammals:Digestive system:Fecal 1.0 phylum SR1 root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 @@ -41421,7 +42610,7 @@ phylum SR1 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 phylum SR1 root:Host-associated:Insecta 1.0 phylum SR1 root:Engineered:Biogas plant 1.0 phylum SR1 root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 -family Pasteurellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 +family Pasteurellaceae root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 family Pasteurellaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 20.0 family Pasteurellaceae root:Host-associated:Mammals:Digestive system 6.0 family Pasteurellaceae root:Host-associated:Human 10.0 @@ -41431,7 +42620,7 @@ family Pasteurellaceae root:Host-associated:Human:Skin 7.0 family Pasteurellaceae root:Mixed 9.0 family Pasteurellaceae root:Host-associated:Mammals 3.0 family Pasteurellaceae root:Host-associated:Human:Reproductive system:Vagina 1.0 -family Pasteurellaceae root:Host-associated:Human:Digestive system:Oral 42.0 +family Pasteurellaceae root:Host-associated:Human:Digestive system:Oral 43.0 family Pasteurellaceae root:Environmental:Terrestrial:Soil 1.0 family Pasteurellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Pasteurellaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -41448,9 +42637,9 @@ family Pasteurellaceae root:Host-associated:Insecta:Digestive system 1.0 family Pasteurellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 family Pasteurellaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 3.0 family Pasteurellaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 +family Pasteurellaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 family Pasteurellaceae root:Host-associated:Mammals:Gastrointestinal tract 4.0 family Pasteurellaceae root:Engineered:Lab Synthesis:Genetic cross 1.0 -family Pasteurellaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 family Pasteurellaceae root:Engineered:Built environment 3.0 family Pasteurellaceae root:Host-associated:Mammals:Respiratory system 1.0 family Pasteurellaceae root:Host-associated:Animal 1.0 @@ -41481,8 +42670,10 @@ family Neisseriaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Neisseriaceae root:Environmental:Terrestrial:Soil 1.0 family Neisseriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Neisseriaceae root:Environmental:Aquatic:Sediment 1.0 +family Neisseriaceae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Neisseriaceae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Neisseriaceae root:Host-associated:Human:Digestive system:Oral:tongue dorsum 3.0 +family Neisseriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Neisseriaceae root:Host-associated:Human:Digestive system 6.0 family Neisseriaceae root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 family Neisseriaceae root:Engineered:Solid waste:Composting 1.0 @@ -41491,14 +42682,13 @@ family Neisseriaceae root:Host-associated:Mammals:Digestive system:Large intesti family Neisseriaceae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 13.0 family Neisseriaceae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 family Neisseriaceae root:Engineered:Lab enrichment:Defined media 1.0 -family Neisseriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Neisseriaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 5.0 family Neisseriaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 family Neisseriaceae root:Engineered:Wastewater:Industrial wastewater 2.0 family Neisseriaceae root:Host-associated:Insecta:Digestive system 1.0 family Neisseriaceae root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 5.0 family Neisseriaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Neisseriaceae root:Engineered:Wastewater:Water and sludge 3.0 +family Neisseriaceae root:Engineered:Wastewater:Water and sludge 4.0 family Neisseriaceae root:Host-associated:Insecta 3.0 family Neisseriaceae root:Engineered:Built environment 1.0 family Neisseriaceae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 @@ -41515,16 +42705,17 @@ family Neisseriaceae root:Host-associated:Human:Respiratory system:Nasopharyngea family Neisseriaceae root:Host-associated:Spiralia 1.0 family Actinomycetaceae root:Host-associated:Human:Digestive system:Oral:Saliva 24.0 family Actinomycetaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +family Actinomycetaceae root:Environmental:Aquatic:Marine 1.0 family Actinomycetaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Actinomycetaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Actinomycetaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 -family Actinomycetaceae root:Host-associated:Human 9.0 +family Actinomycetaceae root:Host-associated:Human 10.0 family Actinomycetaceae root:Host-associated:Plants 1.0 family Actinomycetaceae root:Engineered:Bioreactor 1.0 family Actinomycetaceae root:Host-associated:Human:Skin 6.0 family Actinomycetaceae root:Engineered:Food production:Fermented beverages 1.0 family Actinomycetaceae root:Host-associated:Human:Reproductive system:Vagina 2.0 -family Actinomycetaceae root:Host-associated:Human:Digestive system:Oral 45.0 +family Actinomycetaceae root:Host-associated:Human:Digestive system:Oral 46.0 family Actinomycetaceae root:Engineered:Food production:Dairy products 1.0 family Actinomycetaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Actinomycetaceae root:Engineered:Biogas plant:Wet fermentation 1.0 @@ -41548,7 +42739,7 @@ family Actinomycetaceae root:Host-associated:Human:Respiratory system:Pulmonary family Actinomycetaceae root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 family Actinomycetaceae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 family Actinomycetaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -genus Haemophilus root:Host-associated:Human:Digestive system:Oral:Saliva 21.0 +genus Haemophilus root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 genus Haemophilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 13.0 genus Haemophilus root:Host-associated:Human 8.0 genus Haemophilus root:Host-associated:Plants 1.0 @@ -41588,13 +42779,13 @@ genus Neisseria root:Host-associated:Human:Digestive system:Large intestine:Feca genus Neisseria root:Environmental:Aquatic:Marine 1.0 genus Neisseria root:Host-associated:Fish 1.0 genus Neisseria root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Neisseria root:Host-associated:Human 5.0 +genus Neisseria root:Host-associated:Human 6.0 genus Neisseria root:Engineered:Bioreactor 1.0 genus Neisseria root:Host-associated:Human:Skin 3.0 genus Neisseria root:Mixed 2.0 genus Neisseria root:Engineered:Food production:Fermented beverages 1.0 genus Neisseria root:Engineered:Wastewater 1.0 -genus Neisseria root:Host-associated:Human:Digestive system:Oral 55.0 +genus Neisseria root:Host-associated:Human:Digestive system:Oral 56.0 genus Neisseria root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Neisseria root:Environmental:Terrestrial:Soil 1.0 genus Neisseria root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -41622,13 +42813,14 @@ genus Neisseria root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 genus Neisseria root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 2.0 genus Actinomyces root:Host-associated:Human:Digestive system:Oral:Saliva 23.0 genus Actinomyces root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +genus Actinomyces root:Environmental:Aquatic:Marine 1.0 genus Actinomyces root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Actinomyces root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -genus Actinomyces root:Host-associated:Human 8.0 +genus Actinomyces root:Host-associated:Human 9.0 genus Actinomyces root:Host-associated:Plants 1.0 genus Actinomyces root:Engineered:Bioreactor 1.0 genus Actinomyces root:Host-associated:Human:Skin 7.0 -genus Actinomyces root:Host-associated:Human:Digestive system:Oral 45.0 +genus Actinomyces root:Host-associated:Human:Digestive system:Oral 46.0 genus Actinomyces root:Engineered:Biogas plant:Wet fermentation 1.0 genus Actinomyces root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Actinomyces root:Host-associated:Human:Digestive system:Oral:tongue dorsum 4.0 @@ -41651,9 +42843,9 @@ genus Actinomyces root:Host-associated:Human:Circulatory system:Blood 1.0 genus Actinomyces root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 genus Actinomyces root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Actinomyces root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -genus Rothia root:Host-associated:Human:Digestive system:Oral:Saliva 15.0 +genus Rothia root:Host-associated:Human:Digestive system:Oral:Saliva 16.0 genus Rothia root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 -genus Rothia root:Environmental:Aquatic:Marine 1.0 +genus Rothia root:Environmental:Aquatic:Marine 2.0 genus Rothia root:Host-associated:Mammals:Digestive system 3.0 genus Rothia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Rothia root:Host-associated:Human 5.0 @@ -41693,6 +42885,7 @@ species Prevotella melaninogenica root:Host-associated:Human:Respiratory system: species Prevotella melaninogenica root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Prevotella melaninogenica root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Prevotella melaninogenica root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 +species Prevotella melaninogenica root:Host-associated:Insecta 1.0 species Prevotella melaninogenica root:Host-associated:Human:Respiratory system 1.0 species Prevotella melaninogenica root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 2.0 species Prevotella melaninogenica root:Host-associated:Human:Respiratory system:Pulmonary system 2.0 @@ -41734,13 +42927,14 @@ species [Prevotella] stercorea root:Host-associated:Mammals:Digestive system:Lar species [Prevotella] stercorea root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Digestive system:Oral:Saliva 12.0 phylum Candidatus Gracilibacteria root:Environmental:Aquatic:Marine 1.0 +phylum Candidatus Gracilibacteria root:Engineered:Wastewater:Activated Sludge 1.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Digestive system:Oral 19.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 phylum Candidatus Gracilibacteria root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 4.0 phylum Candidatus Gracilibacteria root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 -family Leptotrichiaceae root:Host-associated:Human:Digestive system:Oral:Saliva 21.0 +family Leptotrichiaceae root:Host-associated:Human:Digestive system:Oral:Saliva 22.0 family Leptotrichiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Leptotrichiaceae root:Environmental:Aquatic:Marine 1.0 family Leptotrichiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -41763,6 +42957,7 @@ family Leptotrichiaceae root:Engineered:Wastewater:Water and sludge 1.0 family Leptotrichiaceae root:Host-associated:Mammals:Respiratory system 1.0 family Leptotrichiaceae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 family Leptotrichiaceae root:Host-associated:Human:Respiratory system 3.0 +family Leptotrichiaceae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 family Leptotrichiaceae root:Host-associated:Human:Milk 1.0 family Leptotrichiaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 genus Granulicatella root:Host-associated:Human:Digestive system:Oral:Saliva 10.0 @@ -41794,24 +42989,24 @@ genus Granulicatella root:Host-associated:Human:Respiratory system 1.0 genus Granulicatella root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Granulicatella root:Host-associated:Human:Circulatory system 1.0 genus Granulicatella root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 -genus Leptotrichia root:Host-associated:Human:Digestive system:Oral:Saliva 15.0 +genus Leptotrichia root:Host-associated:Human:Digestive system:Oral:Saliva 16.0 genus Leptotrichia root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Leptotrichia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Forest soil 3.0 genus Leptotrichia root:Host-associated:Human 4.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Leptotrichia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -genus Leptotrichia root:Host-associated:Human:Digestive system:Oral 41.0 +genus Leptotrichia root:Host-associated:Human:Digestive system:Oral 42.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Contaminated 2.0 genus Leptotrichia root:Environmental:Terrestrial:Soil 13.0 genus Leptotrichia root:Environmental:Aquatic:Marine:Sediment 1.0 genus Leptotrichia root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Leptotrichia root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Leptotrichia root:Host-associated:Human:Digestive system 3.0 genus Leptotrichia root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 5.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Desert 1.0 genus Leptotrichia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 7.0 -genus Leptotrichia root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Leptotrichia root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 genus Leptotrichia root:Engineered:Biotransformation:Microbial enhanced oil recovery 1.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -41821,10 +43016,11 @@ genus Leptotrichia root:Engineered:Built environment 1.0 genus Leptotrichia root:Host-associated:Human:Digestive system:Oral:buccal mucosa 2.0 genus Leptotrichia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Leptotrichia root:Host-associated:Human:Respiratory system 2.0 +genus Leptotrichia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Leptotrichia root:Environmental:Terrestrial:Soil:Mine drainage 1.0 +genus Leptotrichia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Leptotrichia root:Host-associated:Human:Milk 1.0 genus Leptotrichia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -genus Leptotrichia root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Actinomyces graevenitzii root:Host-associated:Human:Digestive system:Oral:Saliva 15.0 species Actinomyces graevenitzii root:Host-associated:Human 1.0 species Actinomyces graevenitzii root:Host-associated:Human:Digestive system:Oral 15.0 @@ -41863,6 +43059,7 @@ species Prevotella oris root:Host-associated:Human:Digestive system:Oral:Supragi species Prevotella oris root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Prevotella oris root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Leptotrichia sp. oral clone FP036 root:Host-associated:Human:Digestive system:Oral:Saliva 9.0 +species Leptotrichia sp. oral clone FP036 root:Host-associated:Human 1.0 species Leptotrichia sp. oral clone FP036 root:Host-associated:Human:Digestive system:Oral 5.0 species Leptotrichia sp. oral clone FP036 root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Leptotrichia sp. oral clone FP036 root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -41892,12 +43089,13 @@ species Streptococcus sanguinis root:Host-associated:Human:Digestive system:Oral species Streptococcus sanguinis root:Engineered:Built environment 1.0 species Prevotella sp. HJM029 root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 species Prevotella sp. HJM029 root:Host-associated:Human:Digestive system:Oral 2.0 -species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 +species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human 2.0 -species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system:Oral 6.0 +species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system:Oral 7.0 species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Human:Digestive system 2.0 +species Candidatus Saccharibacteria oral taxon TM7x root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Lautropia mirabilis root:Host-associated:Human:Digestive system:Oral:Saliva 11.0 species Lautropia mirabilis root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Lautropia mirabilis root:Environmental:Aquatic:Marine 1.0 @@ -41905,7 +43103,8 @@ species Lautropia mirabilis root:Host-associated:Human 3.0 species Lautropia mirabilis root:Engineered:Bioreactor 1.0 species Lautropia mirabilis root:Host-associated:Human:Skin 2.0 species Lautropia mirabilis root:Mixed 1.0 -species Lautropia mirabilis root:Host-associated:Human:Digestive system:Oral 25.0 +species Lautropia mirabilis root:Engineered:Food production:Fermented beverages 1.0 +species Lautropia mirabilis root:Host-associated:Human:Digestive system:Oral 26.0 species Lautropia mirabilis root:Host-associated:Human:Digestive system 2.0 species Lautropia mirabilis root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 species Lautropia mirabilis root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -41920,14 +43119,15 @@ species Lautropia mirabilis root:Host-associated:Human:Digestive system:Oral:Thr species Lautropia mirabilis root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Lautropia mirabilis root:Host-associated:Human:Respiratory system 2.0 species Lautropia mirabilis root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 -species Megasphaera micronuciformis root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 +species Lautropia mirabilis root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Megasphaera micronuciformis root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 species Megasphaera micronuciformis root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Megasphaera micronuciformis root:Host-associated:Human:Digestive system:Oral 2.0 species Megasphaera micronuciformis root:Host-associated:Human:Digestive system 1.0 species Megasphaera micronuciformis root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 species Porphyromonas gingivalis root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Porphyromonas gingivalis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -species Solobacterium moorei root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 +species Solobacterium moorei root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 species Solobacterium moorei root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Solobacterium moorei root:Host-associated:Human 1.0 species Solobacterium moorei root:Host-associated:Human:Digestive system:Oral 4.0 @@ -41936,24 +43136,27 @@ species Corynebacterium matruchotii root:Host-associated:Human:Digestive system: species Corynebacterium matruchotii root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Corynebacterium matruchotii root:Host-associated:Human 1.0 species Corynebacterium matruchotii root:Host-associated:Human:Skin 1.0 -species Corynebacterium matruchotii root:Host-associated:Human:Digestive system:Oral 5.0 +species Corynebacterium matruchotii root:Host-associated:Human:Digestive system:Oral 6.0 species Corynebacterium matruchotii root:Host-associated:Human:Digestive system 2.0 species Corynebacterium matruchotii root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 species Corynebacterium matruchotii root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 species Corynebacterium matruchotii root:Host-associated:Insecta 1.0 -species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 +species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Human:Digestive system:Oral:Saliva 6.0 species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Human:Skin 1.0 species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Human:Digestive system:Oral 7.0 species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Human:Respiratory system 2.0 -species Leptotrichia sp. oral taxon 215 root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 +species Prevotellaceae bacterium Marseille-P2826 root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Leptotrichia sp. oral taxon 215 root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 species Leptotrichia sp. oral taxon 215 root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Leptotrichia sp. oral taxon 215 root:Host-associated:Human 1.0 species Leptotrichia sp. oral taxon 215 root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 +species Leptotrichia sp. oral taxon 215 root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Prevotella salivae root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 species Prevotella salivae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Prevotella salivae root:Host-associated:Human:Digestive system:Oral 2.0 -species Alloprevotella tannerae root:Host-associated:Human:Digestive system:Oral:Saliva 4.0 +species Prevotella salivae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Alloprevotella tannerae root:Host-associated:Human:Digestive system:Oral:Saliva 5.0 species Alloprevotella tannerae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Alloprevotella tannerae root:Host-associated:Human 2.0 species Alloprevotella tannerae root:Host-associated:Human:Digestive system:Oral 10.0 @@ -41968,9 +43171,10 @@ species Alloprevotella tannerae root:Engineered:Built environment 1.0 species Alloprevotella tannerae root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 species Alloprevotella tannerae root:Host-associated:Human:Respiratory system 1.0 species Alloprevotella tannerae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 -phylum candidate division CPR1 root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 +phylum candidate division CPR1 root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 phylum candidate division CPR1 root:Host-associated:Human 1.0 phylum candidate division CPR1 root:Host-associated:Human:Digestive system:Oral 1.0 +phylum candidate division CPR1 root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Neisseria meningitidis root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 species Neisseria meningitidis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Neisseria meningitidis root:Host-associated:Human 1.0 @@ -41992,46 +43196,24 @@ species Corynebacterium durum root:Host-associated:Human:Circulatory system 1.0 species Gemella haemolysans root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Gemella haemolysans root:Host-associated:Human 1.0 species Gemella haemolysans root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 -family Peptoniphilaceae root:Host-associated:Human 5.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine 1.0 -family Peptoniphilaceae root:Engineered:Bioreactor 1.0 -family Peptoniphilaceae root:Host-associated:Human:Skin 16.0 -family Peptoniphilaceae root:Mixed 1.0 -family Peptoniphilaceae root:Host-associated:Mammals 1.0 -family Peptoniphilaceae root:Host-associated:Human:Reproductive system:Vagina 8.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system:Oral 4.0 -family Peptoniphilaceae root:Environmental:Aquatic:Marine:Sediment 3.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system 1.0 -family Peptoniphilaceae root:Engineered:Solid waste:Composting 1.0 -family Peptoniphilaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal 2.0 -family Peptoniphilaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 -family Peptoniphilaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 -family Peptoniphilaceae root:Host-associated:Human:Reproductive system:Female 1.0 -family Peptoniphilaceae root:Engineered:Wastewater:Water and sludge 1.0 -family Peptoniphilaceae root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -family Peptoniphilaceae root:Host-associated:Insecta 1.0 -family Peptoniphilaceae root:Engineered:Built environment 6.0 -family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 -family Peptoniphilaceae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Corynebacterium root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Corynebacterium root:Host-associated:Birds:Digestive system:Fecal 2.0 genus Corynebacterium root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 genus Corynebacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +genus Corynebacterium root:Environmental:Aquatic:Marine 1.0 genus Corynebacterium root:Host-associated:Mammals:Digestive system 1.0 genus Corynebacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Corynebacterium root:Host-associated:Human 5.0 genus Corynebacterium root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Corynebacterium root:Engineered:Bioreactor 9.0 +genus Corynebacterium root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Corynebacterium root:Engineered:Wastewater:Activated Sludge 1.0 genus Corynebacterium root:Host-associated:Human:Skin 23.0 genus Corynebacterium root:Mixed 4.0 genus Corynebacterium root:Host-associated:Mammals 4.0 genus Corynebacterium root:Engineered:Food production:Fermented beverages 1.0 genus Corynebacterium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -genus Corynebacterium root:Host-associated:Human:Digestive system:Oral 22.0 +genus Corynebacterium root:Host-associated:Human:Digestive system:Oral 23.0 genus Corynebacterium root:Engineered:Food production:Dairy products 6.0 genus Corynebacterium root:Environmental:Terrestrial:Soil 4.0 genus Corynebacterium root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -42086,11 +43268,11 @@ genus Propionibacterium root:Engineered:Food production:Dairy products 2.0 genus Propionibacterium root:Host-associated:Plants:Rhizosphere 1.0 genus Propionibacterium root:Environmental:Terrestrial:Soil 2.0 genus Propionibacterium root:Engineered:Biogas plant:Wet fermentation 1.0 +genus Propionibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Propionibacterium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Propionibacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 genus Propionibacterium root:Engineered:Lab enrichment:Defined media 1.0 genus Propionibacterium root:Engineered:Food production 2.0 -genus Propionibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Propionibacterium root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 genus Propionibacterium root:Engineered:Wastewater:Industrial wastewater 1.0 genus Propionibacterium root:Host-associated:Insecta:Digestive system 2.0 @@ -42103,22 +43285,6 @@ genus Propionibacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Propionibacterium root:Host-associated:Insecta 2.0 genus Propionibacterium root:Host-associated:Human:Circulatory system 2.0 genus Propionibacterium root:Host-associated:Annelida 1.0 -genus Peptoniphilus root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 -genus Peptoniphilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -genus Peptoniphilus root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Peptoniphilus root:Host-associated:Human 3.0 -genus Peptoniphilus root:Host-associated:Human:Skin 5.0 -genus Peptoniphilus root:Host-associated:Human:Reproductive system:Vagina 7.0 -genus Peptoniphilus root:Host-associated:Human:Digestive system:Oral 1.0 -genus Peptoniphilus root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Peptoniphilus root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Peptoniphilus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Peptoniphilus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Peptoniphilus root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 -genus Peptoniphilus root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -genus Peptoniphilus root:Host-associated:Insecta 1.0 -genus Peptoniphilus root:Engineered:Built environment 3.0 -genus Peptoniphilus root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Propionibacterium acnes root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Propionibacterium acnes root:Environmental:Aquatic:Marine 1.0 species Propionibacterium acnes root:Host-associated:Human 2.0 @@ -42129,10 +43295,10 @@ species Propionibacterium acnes root:Engineered:Food production:Dairy products 2 species Propionibacterium acnes root:Host-associated:Plants:Rhizosphere 1.0 species Propionibacterium acnes root:Environmental:Terrestrial:Soil 2.0 species Propionibacterium acnes root:Engineered:Biogas plant:Wet fermentation 1.0 +species Propionibacterium acnes root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Propionibacterium acnes root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Propionibacterium acnes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Propionibacterium acnes root:Engineered:Lab enrichment:Defined media 1.0 -species Propionibacterium acnes root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Propionibacterium acnes root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 species Propionibacterium acnes root:Engineered:Wastewater:Industrial wastewater 1.0 species Propionibacterium acnes root:Host-associated:Insecta:Digestive system 1.0 @@ -42167,6 +43333,7 @@ species Staphylococcus aureus root:Host-associated:Human:Digestive system:Large species Staphylococcus aureus root:Host-associated:Human:Skin 9.0 species Staphylococcus aureus root:Mixed 1.0 species Staphylococcus aureus root:Environmental:Terrestrial:Soil 1.0 +species Staphylococcus aureus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Staphylococcus aureus root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 species Staphylococcus aureus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Staphylococcus aureus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 @@ -42196,7 +43363,7 @@ species Streptococcus pneumoniae root:Engineered:Built environment 2.0 species Streptococcus pneumoniae root:Host-associated:Birds 1.0 species Streptococcus pneumoniae root:Host-associated:Human:Digestive system:Oral:Throat 1.0 species Streptococcus pneumoniae root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -species Stomatobaculum longum root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 +species Stomatobaculum longum root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 species Stomatobaculum longum root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Stomatobaculum longum root:Host-associated:Human 2.0 species Stomatobaculum longum root:Host-associated:Human:Digestive system 1.0 @@ -42211,7 +43378,15 @@ species Rothia mucilaginosa root:Environmental:Terrestrial:Soil:Desert 1.0 species Rothia mucilaginosa root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Rothia mucilaginosa root:Host-associated:Birds 1.0 species Rothia mucilaginosa root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 +species [Eubacterium] sulci root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 +species [Eubacterium] sulci root:Host-associated:Human:Digestive system:Oral 1.0 +species [Eubacterium] sulci root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 +species [Eubacterium] sulci root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Prevotella sp. oral taxon 299 root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 +species Prevotella sp. oral taxon 299 root:Host-associated:Human:Digestive system:Oral 1.0 +species Prevotella sp. oral taxon 299 root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Actinomyces sp. oral clone CT047 root:Host-associated:Human:Digestive system:Oral:Saliva 9.0 +species Actinomyces sp. oral clone CT047 root:Host-associated:Human 1.0 species Actinomyces sp. oral clone CT047 root:Host-associated:Human:Digestive system:Oral 6.0 species Actinomyces sp. oral clone CT047 root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Actinomyces sp. oral clone CT047 root:Host-associated:Human:Digestive system 1.0 @@ -42279,6 +43454,7 @@ species Prevotella nigrescens root:Engineered:Built environment 1.0 species Prevotella nigrescens root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 species Prevotella nigrescens root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Prevotella nigrescens root:Host-associated:Human:Respiratory system 1.0 +species Prevotella nigrescens root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Prevotella veroralis root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 species Prevotella veroralis root:Host-associated:Human:Digestive system:Oral 1.0 species Streptococcus sobrinus root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 @@ -42305,12 +43481,12 @@ genus Exiguobacterium root:Engineered:Food production:Dairy products 2.0 genus Exiguobacterium root:Host-associated:Plants:Rhizosphere 2.0 genus Exiguobacterium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Exiguobacterium root:Environmental:Aquatic:Sediment 1.0 +genus Exiguobacterium root:Engineered:Lab enrichment 3.0 genus Exiguobacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Exiguobacterium root:Engineered:Food production 1.0 genus Exiguobacterium root:Environmental:Aquatic:Marine:Brackish 1.0 genus Exiguobacterium root:Environmental:Aquatic:Thermal springs:Sediment 2.0 genus Exiguobacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Exiguobacterium root:Engineered:Lab enrichment 3.0 genus Exiguobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Exiguobacterium root:Engineered:Food production:Fermented vegetables 2.0 genus Exiguobacterium root:Host-associated:Birds 1.0 @@ -42338,6 +43514,8 @@ genus Paenibacillus root:Host-associated:Plants:Phylloplane 1.0 genus Paenibacillus root:Host-associated:Plants:Rhizosphere 2.0 genus Paenibacillus root:Environmental:Terrestrial:Soil 16.0 genus Paenibacillus root:Environmental:Aquatic:Marine:Sediment 4.0 +genus Paenibacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus Paenibacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Paenibacillus root:Environmental:Aquatic:Thermal springs 1.0 genus Paenibacillus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Paenibacillus root:Engineered:Solid waste:Composting 2.0 @@ -42345,7 +43523,6 @@ genus Paenibacillus root:Host-associated:Algae:Red algae 1.0 genus Paenibacillus root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 genus Paenibacillus root:Host-associated:Plants:Root 1.0 genus Paenibacillus root:Engineered:Food production 1.0 -genus Paenibacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Paenibacillus root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Paenibacillus root:Host-associated 1.0 genus Paenibacillus root:Environmental:Aquatic:Marine:Brackish 4.0 @@ -42355,9 +43532,9 @@ genus Paenibacillus root:Engineered:Built environment 3.0 genus Paenibacillus root:Engineered:Food production:Fermented vegetables 1.0 genus Paenibacillus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Paenibacillus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -genus Paenibacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Paenibacillus root:Engineered:Bioremediation:Hydrocarbon 1.0 genus Paenibacillus root:Engineered:Biotransformation 1.0 +genus Paenibacillus root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Paenibacillus root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 genus Paenibacillus root:Host-associated:Human:Circulatory system 1.0 genus Paenibacillus root:Environmental:Terrestrial:Soil:Loam 1.0 @@ -42365,9 +43542,9 @@ genus Paenibacillus root:Host-associated:Human:Respiratory system:Pulmonary syst genus Paenibacillus root:Host-associated:Annelida:Digestive system 1.0 species Exiguobacterium succinus root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Exiguobacterium succinus root:Host-associated:Birds:Digestive system:Fecal 1.0 +species Exiguobacterium succinus root:Engineered:Lab enrichment 3.0 species Exiguobacterium succinus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Exiguobacterium succinus root:Engineered:Food production 1.0 -species Exiguobacterium succinus root:Engineered:Lab enrichment 3.0 species Exiguobacterium succinus root:Engineered:Food production:Fermented vegetables 1.0 species Leptotrichia p-1630-c5 root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Rothia dentocariosa root:Host-associated:Human:Digestive system:Oral:Saliva 3.0 @@ -42478,7 +43655,7 @@ species Tannerella forsythia root:Host-associated:Human:Digestive system:Oral:Su species Tannerella forsythia root:Host-associated:Insecta:Digestive system 1.0 species Tannerella forsythia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 2.0 species Bacteroidetes oral taxon 274 root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 -species Bacteroidetes oral taxon 274 root:Host-associated:Human:Digestive system:Oral 8.0 +species Bacteroidetes oral taxon 274 root:Host-associated:Human:Digestive system:Oral 9.0 species Bacteroidetes oral taxon 274 root:Environmental:Aquatic:Freshwater:Lotic 1.0 species Bacteroidetes oral taxon 274 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 species Leptotrichia sp. oral clone GT018 root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 @@ -42525,7 +43702,7 @@ species Catonella morbi root:Host-associated:Human:Skin 1.0 species Catonella morbi root:Host-associated:Human:Digestive system:Oral 1.0 species Catonella morbi root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Capnocytophaga root:Host-associated:Human:Digestive system:Oral:Saliva 2.0 -genus Capnocytophaga root:Host-associated:Human:Digestive system:Oral 22.0 +genus Capnocytophaga root:Host-associated:Human:Digestive system:Oral 23.0 genus Capnocytophaga root:Host-associated:Human:Digestive system 1.0 genus Capnocytophaga root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 genus Capnocytophaga root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 8.0 @@ -42553,7 +43730,8 @@ species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive sys species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Leptotrichia sp. oral taxon 212 root:Environmental:Aquatic:Marine 1.0 species Leptotrichia sp. oral taxon 212 root:Host-associated:Fish 1.0 -species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Oral 17.0 +species Leptotrichia sp. oral taxon 212 root:Engineered:Food production:Fermented beverages 1.0 +species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Oral 18.0 species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 species Leptotrichia sp. oral taxon 212 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 3.0 @@ -42591,9 +43769,11 @@ order Cardiobacteriales root:Host-associated:Human:Skin:Naris 1.0 order Cardiobacteriales root:Host-associated:Mammals:Skin 1.0 genus Parvimonas root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 genus Parvimonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +genus Parvimonas root:Environmental:Aquatic:Marine 1.0 genus Parvimonas root:Host-associated:Human:Reproductive system:Vagina 2.0 genus Parvimonas root:Host-associated:Human:Digestive system:Oral 4.0 genus Parvimonas root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 +genus Parvimonas root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Parvimonas root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Streptococcus parasanguinis root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Streptococcus parasanguinis root:Host-associated:Human:Digestive system:Oral 1.0 @@ -42611,7 +43791,8 @@ species Lacticigenium naphtae root:Host-associated:Human:Digestive system:Oral:T phylum Candidatus Atribacteria root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 phylum Candidatus Atribacteria root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Candidatus Atribacteria root:Engineered:Bioreactor 4.0 -phylum Candidatus Atribacteria root:Environmental:Aquatic:Marine:Sediment 3.0 +phylum Candidatus Atribacteria root:Environmental:Aquatic:Marine:Sediment 4.0 +phylum Candidatus Atribacteria root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 phylum Candidatus Atribacteria root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 species Actinomyces turicensis root:Host-associated:Human:Digestive system:Oral:Saliva 1.0 species Actinomyces turicensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -42664,6 +43845,7 @@ species Aeriscardovia aeriphila root:Host-associated:Human:Skin 1.0 species Aeriscardovia aeriphila root:Host-associated:Birds:Digestive system 1.0 species Aeriscardovia aeriphila root:Host-associated:Animal 1.0 species Methanobrevibacter woesei root:Host-associated:Birds:Digestive system:Fecal 1.0 +species Methanobrevibacter woesei root:Host-associated:Mammals:Digestive system 1.0 species Veillonella magna root:Host-associated:Birds:Digestive system:Fecal 1.0 species Veillonella magna root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Veillonella magna root:Host-associated:Mammals:Digestive system 1.0 @@ -42691,8 +43873,9 @@ species Bacteroides salanitronis root:Host-associated:Birds:Digestive system:Dig species Bacteroides salanitronis root:Host-associated:Birds:Digestive system 1.0 species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Birds:Digestive system:Fecal 5.0 species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Birds:Digestive system:Ceca 1.0 species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Birds:Digestive system:Ceca 1.0 +species Bacteroides sp. CAG:1060 57 27 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Bacteroides sp. CAG:1060 57 27 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Mediterranea massiliensis root:Host-associated:Birds:Digestive system:Fecal 2.0 species Mediterranea massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 @@ -42702,12 +43885,13 @@ species Mediterranea massiliensis root:Host-associated:Birds:Digestive system:Ce species Mediterranea massiliensis root:Host-associated:Human:Digestive system 1.0 species Mediterranea massiliensis root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Bacteroides plebeius root:Host-associated:Birds:Digestive system:Fecal 2.0 -species Bacteroides plebeius root:Host-associated:Human:Digestive system:Large intestine:Fecal 33.0 +species Bacteroides plebeius root:Host-associated:Human:Digestive system:Large intestine:Fecal 35.0 species Bacteroides plebeius root:Host-associated:Human 1.0 species Bacteroides plebeius root:Host-associated:Human:Digestive system:Intestine 1.0 species Bacteroides plebeius root:Engineered:Wastewater 1.0 species Bacteroides plebeius root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Bacteroides plebeius root:Environmental:Aquatic:Marine:Sediment 3.0 +species Bacteroides plebeius root:Engineered:Lab enrichment 1.0 species Bacteroides plebeius root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Bacteroides plebeius root:Host-associated:Birds:Digestive system:Ceca 1.0 species Bacteroides plebeius root:Host-associated:Human:Digestive system 8.0 @@ -42715,10 +43899,9 @@ species Bacteroides plebeius root:Host-associated:Mammals:Digestive system:Large species Bacteroides plebeius root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Bacteroides plebeius root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Bacteroides plebeius root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Bacteroides plebeius root:Engineered:Lab enrichment 1.0 species Bacteroides plebeius root:Host-associated:Animal:Digestive system:Fecal 2.0 species Megamonas hypermegale root:Host-associated:Birds:Digestive system:Fecal 2.0 -species Megamonas hypermegale root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Megamonas hypermegale root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Megamonas hypermegale root:Host-associated:Human:Digestive system:Large intestine 1.0 species Megamonas hypermegale root:Host-associated:Birds:Digestive system:Ceca 1.0 species Megamonas hypermegale root:Host-associated:Human:Digestive system 4.0 @@ -42735,7 +43918,7 @@ species Parabacteroides sp. Marseille-P3160 root:Host-associated:Birds:Digestive species Parabacteroides sp. Marseille-P3160 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Clostridiales bacterium CIEAF 019 root:Host-associated:Birds:Digestive system:Fecal 1.0 genus Butyricicoccus root:Host-associated:Birds:Digestive system:Fecal 3.0 -genus Butyricicoccus root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +genus Butyricicoccus root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 genus Butyricicoccus root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Butyricicoccus root:Host-associated:Mammals:Digestive system 1.0 genus Butyricicoccus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -42770,55 +43953,61 @@ phylum Echinodermata root:Host-associated:Insecta:Digestive system 1.0 phylum Echinodermata root:Environmental:Aquatic:Marine:Pelagic 3.0 phylum Mucoromycota root:Host-associated:Birds:Digestive system:Fecal 1.0 phylum Mucoromycota root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -phylum Mucoromycota root:Environmental:Aquatic:Marine 4.0 +phylum Mucoromycota root:Environmental:Aquatic:Marine 5.0 phylum Mucoromycota root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Mucoromycota root:Environmental:Terrestrial:Soil:Forest soil 4.0 phylum Mucoromycota root:Host-associated:Plants 2.0 phylum Mucoromycota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Mucoromycota root:Host-associated:Mammals 1.0 phylum Mucoromycota root:Engineered:Food production:Fermented beverages 1.0 +phylum Mucoromycota root:Engineered:Food production:Dairy products 1.0 phylum Mucoromycota root:Host-associated:Plants:Rhizosphere 7.0 -phylum Mucoromycota root:Environmental:Terrestrial:Soil 3.0 +phylum Mucoromycota root:Environmental:Terrestrial:Soil 4.0 phylum Mucoromycota root:Environmental:Aquatic:Marine:Sediment 3.0 +phylum Mucoromycota root:Engineered:Lab enrichment 1.0 +phylum Mucoromycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Mucoromycota root:Host-associated:Human:Digestive system 1.0 phylum Mucoromycota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 phylum Mucoromycota root:Engineered:Solid waste:Composting 2.0 phylum Mucoromycota root:Engineered:Lab enrichment:Defined media 1.0 -phylum Mucoromycota root:Host-associated:Plants:Root 2.0 -phylum Mucoromycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 +phylum Mucoromycota root:Host-associated:Plants:Root 3.0 phylum Mucoromycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Mucoromycota root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 phylum Mucoromycota root:Environmental:Terrestrial:Soil:Clay 1.0 -phylum Mucoromycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Mucoromycota root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +phylum Mucoromycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Mucoromycota root:Host-associated:Insecta 1.0 phylum Mucoromycota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Mucoromycota root:Engineered:Food production:Fermented vegetables 1.0 phylum Mucoromycota root:Environmental:Air 1.0 phylum Mucoromycota root:Host-associated:Arthropoda 1.0 +phylum Mucoromycota root:Host-associated:Fungi 1.0 phylum Mucoromycota root:Engineered:Bioremediation:Hydrocarbon 1.0 class Sordariomycetes root:Host-associated:Birds:Digestive system:Fecal 1.0 class Sordariomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -class Sordariomycetes root:Environmental:Aquatic:Marine 7.0 +class Sordariomycetes root:Environmental:Aquatic:Marine 8.0 class Sordariomycetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 class Sordariomycetes root:Environmental:Terrestrial:Soil:Forest soil 2.0 class Sordariomycetes root:Host-associated:Human 1.0 class Sordariomycetes root:Host-associated:Plants 12.0 class Sordariomycetes root:Environmental:Aquatic:Estuary:Sediment 1.0 class Sordariomycetes root:Engineered:Bioreactor 6.0 +class Sordariomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Sordariomycetes root:Host-associated:Human:Skin 1.0 class Sordariomycetes root:Host-associated:Mammals 1.0 class Sordariomycetes root:Engineered:Food production:Fermented beverages 2.0 class Sordariomycetes root:Engineered:Wastewater 2.0 class Sordariomycetes root:Environmental:Terrestrial:Soil:Contaminated 1.0 class Sordariomycetes root:Host-associated:Plants:Rhizosphere 11.0 -class Sordariomycetes root:Environmental:Terrestrial:Soil 6.0 +class Sordariomycetes root:Environmental:Terrestrial:Soil 7.0 class Sordariomycetes root:Environmental:Aquatic:Marine:Sediment 3.0 class Sordariomycetes root:Environmental:Aquatic:Sediment 1.0 +class Sordariomycetes root:Engineered:Lab enrichment 1.0 +class Sordariomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Sordariomycetes root:Environmental:Aquatic:Freshwater 1.0 class Sordariomycetes root:Engineered:Solid waste:Composting 2.0 class Sordariomycetes root:Engineered:Lab enrichment:Defined media 1.0 -class Sordariomycetes root:Host-associated:Plants:Root 2.0 +class Sordariomycetes root:Host-associated:Plants:Root 3.0 class Sordariomycetes root:Engineered:Food production 1.0 class Sordariomycetes root:Environmental:Terrestrial:Deep subsurface 3.0 class Sordariomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -42826,8 +44015,8 @@ class Sordariomycetes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 class Sordariomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Sordariomycetes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Sordariomycetes root:Environmental:Terrestrial:Soil:Clay 1.0 -class Sordariomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Sordariomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Sordariomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Sordariomycetes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Sordariomycetes root:Engineered:Built environment 1.0 class Sordariomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -42837,7 +44026,7 @@ class Sordariomycetes root:Environmental:Terrestrial:Soil:Loam 1.0 class Echinoidea root:Host-associated:Birds:Digestive system:Fecal 1.0 class Echinoidea root:Environmental:Aquatic:Marine 3.0 class Saccharomycetes root:Host-associated:Birds:Digestive system:Fecal 1.0 -class Saccharomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +class Saccharomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 class Saccharomycetes root:Environmental:Aquatic:Marine 6.0 class Saccharomycetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 class Saccharomycetes root:Host-associated:Mammals:Digestive system 1.0 @@ -42851,10 +44040,12 @@ class Saccharomycetes root:Host-associated:Mammals 1.0 class Saccharomycetes root:Engineered:Food production:Fermented beverages 4.0 class Saccharomycetes root:Engineered:Wastewater 1.0 class Saccharomycetes root:Host-associated:Human:Digestive system:Oral 1.0 -class Saccharomycetes root:Engineered:Food production:Dairy products 1.0 +class Saccharomycetes root:Engineered:Food production:Dairy products 2.0 class Saccharomycetes root:Environmental:Terrestrial:Soil 3.0 class Saccharomycetes root:Environmental:Aquatic:Marine:Sediment 5.0 +class Saccharomycetes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 class Saccharomycetes root:Engineered:Biogas plant:Wet fermentation 2.0 +class Saccharomycetes root:Engineered:Lab enrichment 1.0 class Saccharomycetes root:Host-associated:Human:Digestive system 2.0 class Saccharomycetes root:Environmental:Aquatic:Marine:Coastal 2.0 class Saccharomycetes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -42863,10 +44054,10 @@ class Saccharomycetes root:Engineered:Food production 3.0 class Saccharomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 class Saccharomycetes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Saccharomycetes root:Host-associated:Insecta:Digestive system 1.0 +class Saccharomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Saccharomycetes root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 class Saccharomycetes root:Engineered:Lab Synthesis:Genetic cross 1.0 class Saccharomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -class Saccharomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Saccharomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 class Saccharomycetes root:Host-associated:Insecta 1.0 class Saccharomycetes root:Engineered:Built environment 3.0 @@ -42953,10 +44144,10 @@ species Lactobacillus sulfureus root:Host-associated:Birds:Digestive system:Feca species Lactobacillus sulfureus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus sulfureus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Bacteroides vaginae root:Host-associated:Birds:Digestive system:Fecal 1.0 +species Bacteroides vaginae root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides vaginae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bacteroides vaginae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Bacteroides vaginae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Bacteroides vaginae root:Host-associated:Mammals:Digestive system:Midgut 1.0 species SMB53 tyrobutyricum root:Host-associated:Birds:Digestive system:Fecal 1.0 species SMB53 tyrobutyricum root:Host-associated:Mammals 1.0 species SMB53 tyrobutyricum root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -42994,7 +44185,7 @@ class Elusimicrobia root:Environmental:Terrestrial:Geologic 1.0 class Elusimicrobia root:Environmental:Aquatic:Estuary:Sediment 1.0 class Elusimicrobia root:Host-associated:Mammals 1.0 class Elusimicrobia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Elusimicrobia root:Environmental:Aquatic:Marine:Sediment 6.0 +class Elusimicrobia root:Environmental:Aquatic:Marine:Sediment 7.0 class Elusimicrobia root:Host-associated:Human:Digestive system 1.0 class Elusimicrobia root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 class Elusimicrobia root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -43021,12 +44212,12 @@ genus Gracilibacter root:Engineered:Bioreactor 1.0 genus Gracilibacter root:Engineered:Wastewater:Activated Sludge 18.0 genus Gracilibacter root:Engineered:Wastewater 2.0 genus Gracilibacter root:Environmental:Terrestrial:Soil 1.0 +genus Gracilibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Gracilibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Gracilibacter root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Gracilibacter root:Host-associated:Human:Digestive system 1.0 genus Gracilibacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 genus Gracilibacter root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -genus Gracilibacter root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Gracilibacter root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Gracilibacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 species Gracilibacter sardiniense root:Host-associated:Birds:Digestive system:Fecal 1.0 @@ -43052,6 +44243,7 @@ genus Eisenbergiella root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Eisenbergiella root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 genus Eisenbergiella root:Host-associated:Birds:Digestive system 2.0 genus Candidatus Arthromitus root:Host-associated:Birds:Digestive system:Fecal 1.0 +genus Candidatus Arthromitus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Candidatus Arthromitus root:Host-associated:Animal:Digestive system 1.0 genus Candidatus Arthromitus root:Host-associated:Birds:Digestive system 1.0 species Lactobacillus sp. KC45b root:Host-associated:Birds:Digestive system:Fecal 1.0 @@ -43087,6 +44279,7 @@ phylum [Thermi] root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum [Thermi] root:Host-associated:Plants:Phylloplane 6.0 phylum [Thermi] root:Environmental:Terrestrial:Soil 13.0 phylum [Thermi] root:Engineered:Modeled:Simulated communities (microbial mixture) 3.0 +phylum [Thermi] root:Engineered:Lab enrichment 3.0 phylum [Thermi] root:Host-associated:Human:Digestive system 1.0 phylum [Thermi] root:Engineered:Solid waste:Composting 4.0 phylum [Thermi] root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 @@ -43099,7 +44292,7 @@ phylum [Thermi] root:Host-associated:Mammals:Digestive system:Large intestine 2. phylum [Thermi] root:Engineered:Food production:Fermented seafood 1.0 phylum [Thermi] root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 phylum [Thermi] root:Engineered:Modeled 1.0 -phylum [Thermi] root:Host-associated:Insecta:Digestive system 1.0 +phylum [Thermi] root:Host-associated:Insecta:Digestive system 2.0 phylum [Thermi] root:Environmental:Terrestrial:Soil:Mine 2.0 phylum [Thermi] root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 phylum [Thermi] root:Host-associated:Fish:Digestive system:Foregut 1.0 @@ -43110,7 +44303,6 @@ phylum [Thermi] root:Host-associated:Birds:Digestive system:Digestive tube 1.0 phylum [Thermi] root:Environmental:Aquatic:Freshwater:Ice 1.0 phylum [Thermi] root:Host-associated:Insecta 1.0 phylum [Thermi] root:Engineered:Built environment 1.0 -phylum [Thermi] root:Engineered:Lab enrichment 3.0 phylum [Thermi] root:Engineered:Food production:Fermented vegetables 1.0 phylum [Thermi] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 phylum [Thermi] root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -43120,7 +44312,7 @@ phylum [Thermi] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline phylum [Thermi] root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 phylum [Thermi] root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 genus Dorea root:Host-associated:Birds:Digestive system:Fecal 1.0 -genus Dorea root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +genus Dorea root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 genus Dorea root:Host-associated:Mammals:Digestive system 2.0 genus Dorea root:Engineered:Wastewater:Activated Sludge 1.0 genus Dorea root:Host-associated:Human:Digestive system:Oral 1.0 @@ -43174,10 +44366,10 @@ species Turicibacter paramesenteroides root:Host-associated:Mammals:Digestive sy species Slackia stercoris root:Host-associated:Birds:Digestive system:Fecal 1.0 species Slackia stercoris root:Host-associated:Birds:Digestive system:Ceca 1.0 species Rikenella stercorea root:Host-associated:Birds:Digestive system:Fecal 1.0 +species Rikenella stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Rikenella stercorea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Rikenella stercorea root:Host-associated:Birds:Digestive system:Ceca 1.0 species Rikenella stercorea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -species Rikenella stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides barnesiae root:Host-associated:Birds:Digestive system:Fecal 1.0 species Bacteroides barnesiae root:Host-associated:Birds:Digestive system:Ceca 2.0 species Bacteroides barnesiae root:Host-associated:Birds 1.0 @@ -43187,17 +44379,17 @@ phylum WWE1 root:Engineered:Wastewater:Activated Sludge 1.0 phylum WWE1 root:Engineered:Food production:Fermented beverages 1.0 phylum WWE1 root:Engineered:Wastewater 1.0 phylum WWE1 root:Environmental:Terrestrial:Soil:Contaminated 2.0 +phylum WWE1 root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum WWE1 root:Engineered:Biogas plant:Wet fermentation 2.0 +phylum WWE1 root:Engineered:Lab enrichment 1.0 +phylum WWE1 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum WWE1 root:Engineered:Solid waste:Composting 1.0 phylum WWE1 root:Engineered:Lab enrichment:Defined media 1.0 -phylum WWE1 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum WWE1 root:Engineered:Wastewater:Industrial wastewater 1.0 phylum WWE1 root:Engineered:Bioreactor:Continuous culture 1.0 phylum WWE1 root:Engineered:Wastewater:Water and sludge 4.0 -phylum WWE1 root:Engineered:Lab enrichment 1.0 phylum WWE1 root:Engineered:Biogas plant 2.0 phylum WWE1 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -phylum WWE1 root:Host-associated:Mammals:Digestive system:Midgut 1.0 phylum WWE1 root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 class [Cloacamonae] root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 5.0 class [Cloacamonae] root:Environmental:Terrestrial:Soil:Contaminated 1.0 @@ -43238,6 +44430,7 @@ family Syntrophomonadaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Syntrophomonadaceae root:Environmental:Terrestrial:Soil 1.0 family Syntrophomonadaceae root:Environmental:Aquatic:Sediment 2.0 family Syntrophomonadaceae root:Engineered:Biogas plant:Wet fermentation 5.0 +family Syntrophomonadaceae root:Engineered:Lab enrichment 1.0 family Syntrophomonadaceae root:Engineered:Solid waste:Composting 1.0 family Syntrophomonadaceae root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 family Syntrophomonadaceae root:Engineered:Lab enrichment:Defined media 2.0 @@ -43245,7 +44438,6 @@ family Syntrophomonadaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment family Syntrophomonadaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Syntrophomonadaceae root:Engineered:Bioreactor:Continuous culture 3.0 family Syntrophomonadaceae root:Engineered:Wastewater:Water and sludge 4.0 -family Syntrophomonadaceae root:Engineered:Lab enrichment 1.0 family Syntrophomonadaceae root:Engineered:Biogas plant 5.0 family Syntrophomonadaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Syntrophomonadaceae root:Engineered:Solid waste:Solid animal waste 1.0 @@ -43265,13 +44457,13 @@ genus Syntrophomonas root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Syntrophomonas root:Environmental:Terrestrial:Soil 1.0 genus Syntrophomonas root:Environmental:Aquatic:Marine:Sediment 1.0 genus Syntrophomonas root:Engineered:Biogas plant:Wet fermentation 3.0 +genus Syntrophomonas root:Engineered:Lab enrichment 1.0 genus Syntrophomonas root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Syntrophomonas root:Engineered:Solid waste:Composting 1.0 genus Syntrophomonas root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 genus Syntrophomonas root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Syntrophomonas root:Engineered:Lab enrichment:Defined media 2.0 genus Syntrophomonas root:Engineered:Wastewater:Water and sludge 3.0 -genus Syntrophomonas root:Engineered:Lab enrichment 1.0 genus Syntrophomonas root:Engineered:Biogas plant 4.0 genus Syntrophomonas root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus Syntrophomonas root:Engineered:Solid waste:Solid animal waste 1.0 @@ -43296,6 +44488,7 @@ phylum Thermotogae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 phylum Thermotogae root:Engineered:Bioreactor 23.0 phylum Thermotogae root:Engineered:Wastewater:Activated Sludge 16.0 phylum Thermotogae root:Mixed 2.0 +phylum Thermotogae root:Host-associated:Mammals 1.0 phylum Thermotogae root:Engineered:Food production:Dairy products 1.0 phylum Thermotogae root:Environmental:Terrestrial:Soil:Contaminated 1.0 phylum Thermotogae root:Environmental:Terrestrial:Soil 3.0 @@ -43311,13 +44504,14 @@ phylum Thermotogae root:Environmental:Aquatic:Marine:Hydrothermal vents 3.0 phylum Thermotogae root:Engineered:Lab enrichment:Defined media 1.0 phylum Thermotogae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 2.0 phylum Thermotogae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -phylum Thermotogae root:Engineered:Food production:Fermented seafood 1.0 +phylum Thermotogae root:Engineered:Food production:Fermented seafood 2.0 phylum Thermotogae root:Engineered:Modeled 1.0 phylum Thermotogae root:Environmental:Terrestrial:Soil:Sand 1.0 phylum Thermotogae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 phylum Thermotogae root:Engineered:Bioreactor:Continuous culture 3.0 phylum Thermotogae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 phylum Thermotogae root:Engineered:Wastewater:Water and sludge 8.0 +phylum Thermotogae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 phylum Thermotogae root:Engineered:Biogas plant 5.0 phylum Thermotogae root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 phylum Thermotogae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 2.0 @@ -43354,6 +44548,7 @@ class Thermotogae root:Engineered:Bioreactor:Continuous culture 1.0 class Thermotogae root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 class Thermotogae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 class Thermotogae root:Engineered:Wastewater:Water and sludge 8.0 +class Thermotogae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 class Thermotogae root:Engineered:Biogas plant 4.0 class Thermotogae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 class Thermotogae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -43390,8 +44585,8 @@ family Gracilibacteraceae root:Engineered:Wastewater:Nutrient removal:Dissolved family Gracilibacteraceae root:Engineered:Wastewater:Activated Sludge 15.0 family Gracilibacteraceae root:Engineered:Wastewater 2.0 family Gracilibacteraceae root:Environmental:Terrestrial:Soil 2.0 -family Gracilibacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Gracilibacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Gracilibacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Gracilibacteraceae root:Engineered:Biogas plant 1.0 family Gracilibacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus HMMVBeg-29 root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 @@ -43451,6 +44646,7 @@ order Thermotogales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Thermotogales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 6.0 order Thermotogales root:Engineered:Bioreactor 3.0 order Thermotogales root:Engineered:Wastewater:Activated Sludge 4.0 +order Thermotogales root:Host-associated:Mammals 1.0 order Thermotogales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Thermotogales root:Environmental:Aquatic:Marine:Sediment 1.0 order Thermotogales root:Engineered:Biogas plant:Wet fermentation 2.0 @@ -43481,8 +44677,8 @@ genus Dethiobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Dethiobacter root:Environmental:Terrestrial:Soil 2.0 genus Dethiobacter root:Environmental:Aquatic:Sediment 1.0 genus Dethiobacter root:Engineered:Biogas plant:Wet fermentation 2.0 -genus Dethiobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Dethiobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Dethiobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Dethiobacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Dethiobacter root:Engineered:Wastewater:Water and sludge 2.0 genus Dethiobacter root:Engineered:Solid waste:Composting:Bioreactor 1.0 @@ -43511,7 +44707,7 @@ family Intrasporangiaceae root:Host-associated:Human:Digestive system:Large inte family Intrasporangiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Intrasporangiaceae root:Engineered:Bioreactor 5.0 family Intrasporangiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -family Intrasporangiaceae root:Engineered:Wastewater:Activated Sludge 15.0 +family Intrasporangiaceae root:Engineered:Wastewater:Activated Sludge 16.0 family Intrasporangiaceae root:Environmental:Terrestrial:Soil:Permafrost 4.0 family Intrasporangiaceae root:Mixed 1.0 family Intrasporangiaceae root:Host-associated:Mammals 2.0 @@ -43519,6 +44715,7 @@ family Intrasporangiaceae root:Engineered:Wastewater 2.0 family Intrasporangiaceae root:Environmental:Terrestrial:Soil 6.0 family Intrasporangiaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Intrasporangiaceae root:Environmental:Aquatic:Sediment 1.0 +family Intrasporangiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Intrasporangiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Intrasporangiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Intrasporangiaceae root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 @@ -43526,7 +44723,7 @@ family Intrasporangiaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Intrasporangiaceae root:Engineered:Wastewater:Water and sludge 1.0 family Intrasporangiaceae root:Engineered:Biogas plant 2.0 family Intrasporangiaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 -family Intrasporangiaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +family Intrasporangiaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 2.0 genus Tissierella Soehngenia root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 2.0 genus Tissierella Soehngenia root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Tissierella Soehngenia root:Host-associated:Human 1.0 @@ -43586,9 +44783,9 @@ genus E6 root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerob genus E6 root:Engineered:Bioreactor 1.0 genus E6 root:Engineered:Wastewater:Activated Sludge 1.0 genus E6 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +genus E6 root:Engineered:Lab enrichment 1.0 genus E6 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus E6 root:Engineered:Bioreactor:Continuous culture 1.0 -genus E6 root:Engineered:Lab enrichment 1.0 genus E6 root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 genus E6 root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 genus Propionicimonas root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 @@ -43607,8 +44804,8 @@ genus DA101 root:Host-associated:Plants:Rhizosphere 3.0 genus DA101 root:Environmental:Terrestrial:Soil 20.0 genus DA101 root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 genus DA101 root:Environmental:Terrestrial:Soil:Grasslands 4.0 -genus DA101 root:Environmental:Terrestrial:Soil:Desert 2.0 genus DA101 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus DA101 root:Environmental:Terrestrial:Soil:Desert 2.0 genus DA101 root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus DA101 root:Environmental:Terrestrial:Soil:Sand 1.0 genus DA101 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -43663,6 +44860,7 @@ family [Tissierellaceae] root:Host-associated:Human:Digestive system:Oral 2.0 family [Tissierellaceae] root:Environmental:Terrestrial:Soil:Contaminated 1.0 family [Tissierellaceae] root:Environmental:Terrestrial:Soil 5.0 family [Tissierellaceae] root:Engineered:Biogas plant:Wet fermentation 3.0 +family [Tissierellaceae] root:Engineered:Lab enrichment 1.0 family [Tissierellaceae] root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family [Tissierellaceae] root:Engineered:Solid waste:Composting 3.0 family [Tissierellaceae] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 @@ -43672,7 +44870,6 @@ family [Tissierellaceae] root:Engineered:Bioreactor:Continuous culture 2.0 family [Tissierellaceae] root:Engineered:Wastewater:Water and sludge 1.0 family [Tissierellaceae] root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 family [Tissierellaceae] root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 -family [Tissierellaceae] root:Engineered:Lab enrichment 1.0 family [Tissierellaceae] root:Engineered:Biogas plant 5.0 family [Tissierellaceae] root:Engineered:Food production:Fermented vegetables 1.0 family [Tissierellaceae] root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -43713,8 +44910,8 @@ family Methanomicrobiaceae root:Engineered:Biotransformation 1.0 family Methanomicrobiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 family Methanomicrobiaceae root:Engineered:Solid waste:Solid animal waste 1.0 family TTA B6 root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 -family TTA B6 root:Engineered:Bioreactor:Continuous culture 1.0 family TTA B6 root:Engineered:Lab enrichment 1.0 +family TTA B6 root:Engineered:Bioreactor:Continuous culture 1.0 family TTA B6 root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 family Dethiosulfovibrionaceae root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 1.0 family Dethiosulfovibrionaceae root:Engineered:Bioreactor 2.0 @@ -43744,6 +44941,7 @@ genus Methanoculleus root:Engineered:Lab enrichment:Defined media 1.0 genus Methanoculleus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Methanoculleus root:Engineered:Bioreactor:Continuous culture 1.0 genus Methanoculleus root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +genus Methanoculleus root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Methanoculleus root:Engineered:Biogas plant 8.0 genus Methanoculleus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Methanoculleus root:Engineered:Biotransformation 1.0 @@ -43790,8 +44988,9 @@ class Caldilineae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 class Caldilineae root:Engineered:Wastewater:Industrial wastewater 1.0 class Caldilineae root:Engineered:Bioreactor:Continuous culture 1.0 class Caldilineae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 -class Caldilineae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 class Caldilineae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +class Caldilineae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +class Caldilineae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class Caldilineae root:Host-associated:Microbial 1.0 class Ardenticatenia root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 class Ardenticatenia root:Host-associated:Fish 1.0 @@ -43818,7 +45017,7 @@ order Caldilineales root:Engineered:Bioreactor 4.0 order Caldilineales root:Engineered:Wastewater:Activated Sludge 9.0 order Caldilineales root:Mixed 2.0 order Caldilineales root:Engineered:Wastewater 3.0 -order Caldilineales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +order Caldilineales root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Caldilineales root:Environmental:Terrestrial:Soil 1.0 order Caldilineales root:Environmental:Aquatic:Marine:Sediment 6.0 order Caldilineales root:Environmental:Aquatic 1.0 @@ -43832,9 +45031,10 @@ order Caldilineales root:Environmental:Aquatic:Marine:Oil-contaminated sediment order Caldilineales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 order Caldilineales root:Engineered:Wastewater:Industrial wastewater 2.0 order Caldilineales root:Environmental:Aquatic:Thermal springs:Sediment 3.0 -order Caldilineales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Caldilineales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Caldilineales root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 order Caldilineales root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 +order Caldilineales root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 order Caldilineales root:Host-associated:Microbial 1.0 family Caldilineaceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 family Caldilineaceae root:Environmental:Aquatic:Marine 7.0 @@ -43852,6 +45052,7 @@ family Caldilineaceae root:Environmental:Terrestrial:Soil 2.0 family Caldilineaceae root:Environmental:Aquatic:Marine:Sediment 6.0 family Caldilineaceae root:Environmental:Aquatic 1.0 family Caldilineaceae root:Host-associated:Porifera 14.0 +family Caldilineaceae root:Engineered:Lab enrichment 1.0 family Caldilineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 family Caldilineaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Caldilineaceae root:Engineered:Solid waste:Composting 1.0 @@ -43862,14 +45063,14 @@ family Caldilineaceae root:Environmental:Aquatic:Marine:Oil-contaminated sedimen family Caldilineaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 family Caldilineaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Caldilineaceae root:Environmental:Aquatic:Thermal springs:Sediment 4.0 +family Caldilineaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 family Caldilineaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Caldilineaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -family Caldilineaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -family Caldilineaceae root:Engineered:Lab enrichment 1.0 family Caldilineaceae root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 +family Caldilineaceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 family Caldilineaceae root:Host-associated:Microbial 1.0 family Woeseiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 -family Woeseiaceae root:Environmental:Aquatic:Marine 23.0 +family Woeseiaceae root:Environmental:Aquatic:Marine 24.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 5.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Oceanic 12.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 @@ -43882,15 +45083,17 @@ family Woeseiaceae root:Mixed 4.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 family Woeseiaceae root:Host-associated:Plants:Rhizosphere 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 15.0 -family Woeseiaceae root:Environmental:Aquatic:Marine:Sediment 49.0 +family Woeseiaceae root:Environmental:Aquatic:Marine:Sediment 50.0 family Woeseiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 family Woeseiaceae root:Environmental:Aquatic:Sediment 2.0 family Woeseiaceae root:Environmental:Aquatic 1.0 family Woeseiaceae root:Host-associated:Porifera 10.0 +family Woeseiaceae root:Engineered:Lab enrichment 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Coastal 4.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Cold seeps 2.0 +family Woeseiaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 family Woeseiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 4.0 @@ -43902,12 +45105,11 @@ family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 2. family Woeseiaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 +family Woeseiaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Woeseiaceae root:Host-associated:Invertebrates:Echinodermata 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -family Woeseiaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Woeseiaceae root:Engineered:Lab enrichment 1.0 family Woeseiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 4.0 family Woeseiaceae root:Host-associated:Algae 1.0 family Woeseiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 @@ -43938,6 +45140,7 @@ genus Rhodopirellula root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Rhodopirellula root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 genus Rhodopirellula root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 @@ -43947,6 +45150,7 @@ genus Planctomicrobium root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 genus Planctomicrobium root:Engineered:Wastewater 1.0 genus Planctomicrobium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Planctomicrobium root:Environmental:Aquatic 1.0 +genus Planctomicrobium root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Planctomicrobium root:Engineered:Lab enrichment:Defined media 2.0 genus Lewinella root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 genus Lewinella root:Environmental:Aquatic:Marine 9.0 @@ -43977,6 +45181,7 @@ genus Sphaerobacter root:Engineered:Solid waste:Composting 5.0 genus Sphaerobacter root:Environmental:Terrestrial:Volcanic 1.0 species Bythopirellula goksoyri root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 species Bythopirellula goksoyri root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Bythopirellula goksoyri root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Tepidisphaera mucosa root:Environmental:Aquatic:Freshwater:Wetlands:Marsh 1.0 species Tepidisphaera mucosa root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Tepidisphaera mucosa root:Environmental:Terrestrial:Soil 1.0 @@ -44021,6 +45226,7 @@ class Dothideomycetes root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 class Dothideomycetes root:Environmental:Terrestrial:Soil:Forest soil 3.0 class Dothideomycetes root:Host-associated:Plants 30.0 class Dothideomycetes root:Engineered:Bioreactor 3.0 +class Dothideomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Dothideomycetes root:Host-associated:Human:Skin 1.0 class Dothideomycetes root:Host-associated:Mammals 1.0 class Dothideomycetes root:Engineered:Food production:Fermented beverages 1.0 @@ -44029,14 +45235,15 @@ class Dothideomycetes root:Host-associated:Plants:Rhizosphere 1.0 class Dothideomycetes root:Environmental:Terrestrial:Soil 2.0 class Dothideomycetes root:Environmental:Aquatic:Marine:Sediment 2.0 class Dothideomycetes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Dothideomycetes root:Engineered:Lab enrichment 1.0 class Dothideomycetes root:Host-associated:Mammals:Digestive system:Stomach 1.0 +class Dothideomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Dothideomycetes root:Environmental:Aquatic:Freshwater 1.0 class Dothideomycetes root:Environmental:Aquatic:Marine:Coastal 1.0 -class Dothideomycetes root:Host-associated:Plants:Root 2.0 +class Dothideomycetes root:Host-associated:Plants:Root 3.0 class Dothideomycetes root:Engineered:Food production 2.0 class Dothideomycetes root:Environmental:Terrestrial:Deep subsurface 2.0 class Dothideomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -class Dothideomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Dothideomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Dothideomycetes root:Environmental:Aquatic:Marine:Brackish 1.0 class Dothideomycetes root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -44048,6 +45255,7 @@ class Dothideomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Cave wat class Dothideomycetes root:Engineered:Food production:Fermented vegetables 1.0 class Dothideomycetes root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 class Dothideomycetes root:Environmental:Air 1.0 +class Dothideomycetes root:Host-associated:Fungi 1.0 class Dothideomycetes root:Host-associated:Human:Circulatory system 1.0 order Sporidiobolales root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 order Sporidiobolales root:Environmental:Aquatic:Marine 1.0 @@ -44055,6 +45263,7 @@ order Sporidiobolales root:Host-associated:Plants 1.0 order Sporidiobolales root:Engineered:Food production:Fermented beverages 1.0 order Sporidiobolales root:Environmental:Terrestrial:Soil 1.0 order Sporidiobolales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Sporidiobolales root:Engineered:Lab enrichment 1.0 order Sporidiobolales root:Host-associated:Human:Digestive system 1.0 order Sporidiobolales root:Environmental:Aquatic:Marine:Coastal 1.0 order Sporidiobolales root:Engineered:Lab Synthesis:Genetic cross 1.0 @@ -44101,6 +45310,7 @@ genus Hymenobacter root:Host-associated:Plants:Phylloplane:Endophytes 1.0 genus Hymenobacter root:Host-associated:Birds 2.0 species Porphyromonas sp. KLE 1280 root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Porphyromonas catoniae root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 +species Porphyromonas catoniae root:Environmental:Aquatic:Marine 1.0 species Dialister pneumosintes root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Dialister pneumosintes root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Dialister pneumosintes root:Host-associated:Human:Digestive system:Oral 6.0 @@ -44109,13 +45319,13 @@ species Prevotella sp. oral taxon 473 root:Host-associated:Human:Respiratory sys species Alloprevotella rava root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 species Alloprevotella rava root:Host-associated:Human:Digestive system:Oral 2.0 species Chryseobacterium caeni root:Host-associated:Arthropoda:Digestive system:Oral:Saliva 1.0 -genus Catenibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 +genus Catenibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 genus Catenibacterium root:Host-associated:Mammals:Digestive system 1.0 genus Catenibacterium root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Catenibacterium root:Environmental:Aquatic:Marine:Coastal 1.0 genus Catenibacterium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bacteroides eggerthii root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -species Catenibacterium mitsuokai root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 +species Catenibacterium mitsuokai root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Catenibacterium mitsuokai root:Environmental:Aquatic:Sediment 1.0 species Catenibacterium mitsuokai root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Blautia massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 @@ -44126,40 +45336,46 @@ species Butyrivibrio crossotus root:Host-associated:Human:Digestive system 1.0 species Ruminococcus faecis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Coprobacter fastidiosus root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Collinsella intestinalis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Collinsella intestinalis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Prevotella sp. 109 root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 species Prevotella sp. 109 root:Host-associated:Human:Digestive system:Intestine 1.0 -species Prevotella sp. 109 root:Host-associated:Human:Digestive system 1.0 species Prevotella sp. 109 root:Engineered:Lab enrichment 1.0 +species Prevotella sp. 109 root:Host-associated:Human:Digestive system 1.0 species Phascolarctobacterium sp. 377 root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Phascolarctobacterium sp. 377 root:Host-associated:Birds:Digestive system:Ceca 1.0 species Blautia sp. YL58 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Blautia sp. YL58 root:Host-associated:Mammals:Digestive system 2.0 species Blautia sp. YL58 root:Host-associated:Mammals 1.0 +species Blautia sp. YL58 root:Host-associated:Human:Digestive system:Intestine 1.0 species Blautia sp. YL58 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Ruminococcus sp. Marseille-P328 root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Ruminococcus sp. Marseille-P328 root:Host-associated:Mammals:Digestive system 1.0 species Prevotellamassilia timonensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 species Prevotellamassilia timonensis root:Host-associated:Human:Digestive system:Large intestine 2.0 +species Prevotellamassilia timonensis root:Mixed 1.0 species Prevotellamassilia timonensis root:Host-associated:Human:Digestive system:Intestine 1.0 species Prevotellamassilia timonensis root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Prevotellamassilia timonensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Prevotellamassilia timonensis root:Host-associated:Human:Digestive system 2.0 species Prevotellamassilia timonensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Prevotellamassilia timonensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Prevotellamassilia timonensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Prevotellamassilia timonensis root:Host-associated:Birds:Digestive system 1.0 -species Adlercreutzia equolifaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 19.0 +species Adlercreutzia equolifaciens root:Host-associated:Human:Digestive system:Large intestine:Fecal 23.0 species Adlercreutzia equolifaciens root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Adlercreutzia equolifaciens root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Adlercreutzia equolifaciens root:Host-associated:Human:Digestive system 2.0 species Adlercreutzia equolifaciens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Adlercreutzia equolifaciens root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Adlercreutzia equolifaciens root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 -species Chlamydia trachomatis root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 +species Chlamydia trachomatis root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +species Chlamydia trachomatis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Chlamydia trachomatis root:Host-associated:Human:Digestive system 1.0 species Chlamydia trachomatis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Senegalimassilia anaerobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 14.0 +species Senegalimassilia anaerobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 species Senegalimassilia anaerobia root:Host-associated:Human:Digestive system:Large intestine 2.0 species Senegalimassilia anaerobia root:Engineered:Bioreactor 2.0 species Senegalimassilia anaerobia root:Engineered:Wastewater:Activated Sludge 1.0 +species Senegalimassilia anaerobia root:Mixed 1.0 species Senegalimassilia anaerobia root:Engineered:Wastewater 1.0 species Senegalimassilia anaerobia root:Environmental:Terrestrial:Soil 1.0 species Senegalimassilia anaerobia root:Host-associated:Human:Digestive system 4.0 @@ -44187,24 +45403,22 @@ species Bacteroides uniformis root:Host-associated:Human 1.0 species Bacteroides uniformis root:Engineered:Wastewater:Activated Sludge 1.0 species Bacteroides uniformis root:Host-associated:Mammals 1.0 species Bacteroides uniformis root:Host-associated:Plants:Rhizosphere 1.0 +species Bacteroides uniformis root:Host-associated:Mammals:Digestive system:Midgut 2.0 +species Bacteroides uniformis root:Engineered:Lab enrichment 1.0 species Bacteroides uniformis root:Host-associated:Human:Digestive system 2.0 species Bacteroides uniformis root:Engineered:Solid waste:Composting 1.0 species Bacteroides uniformis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bacteroides uniformis root:Host-associated 1.0 species Bacteroides uniformis root:Engineered:Wastewater:Water and sludge 2.0 species Bacteroides uniformis root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Bacteroides uniformis root:Engineered:Lab enrichment 1.0 species Bacteroides uniformis root:Host-associated:Mammals:Respiratory system 1.0 -species Bacteroides uniformis root:Host-associated:Mammals:Digestive system:Midgut 2.0 species Bacteroides uniformis root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 species Bacteroides uniformis root:Host-associated:Mammals:Nervous system:Brain 1.0 -genus Faecalitalea root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -genus Faecalitalea root:Host-associated:Human:Digestive system:Large intestine 2.0 -genus Faecalitalea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Duodenibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +species Duodenibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 species Duodenibacillus massiliensis root:Host-associated:Human:Digestive system:Large intestine 2.0 species Candidatus Melainabacteria bacterium MEL.A1 root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Candidatus Melainabacteria bacterium MEL.A1 root:Host-associated:Human:Digestive system:Large intestine 2.0 +species Candidatus Melainabacteria bacterium MEL.A1 root:Mixed 1.0 species Candidatus Melainabacteria bacterium MEL.A1 root:Host-associated:Human:Digestive system 1.0 species Candidatus Melainabacteria bacterium MEL.A1 root:Host-associated:Animal:Digestive system 1.0 species Candidatus Melainabacteria bacterium MEL.A1 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -44300,11 +45514,12 @@ order Saccharomycetales root:Mixed 3.0 order Saccharomycetales root:Engineered:Food production:Fermented beverages 4.0 order Saccharomycetales root:Engineered:Wastewater 1.0 order Saccharomycetales root:Host-associated:Human:Digestive system:Oral 1.0 -order Saccharomycetales root:Engineered:Food production:Dairy products 1.0 +order Saccharomycetales root:Engineered:Food production:Dairy products 2.0 order Saccharomycetales root:Environmental:Terrestrial:Soil 2.0 order Saccharomycetales root:Environmental:Aquatic:Marine:Sediment 5.0 order Saccharomycetales root:Environmental:Aquatic:Sediment 1.0 order Saccharomycetales root:Engineered:Biogas plant:Wet fermentation 2.0 +order Saccharomycetales root:Engineered:Lab enrichment 1.0 order Saccharomycetales root:Host-associated:Mammals:Digestive system:Stomach 1.0 order Saccharomycetales root:Host-associated:Human:Digestive system 2.0 order Saccharomycetales root:Environmental:Aquatic:Freshwater 1.0 @@ -44314,10 +45529,10 @@ order Saccharomycetales root:Engineered:Food production 3.0 order Saccharomycetales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 order Saccharomycetales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Saccharomycetales root:Host-associated:Insecta:Digestive system 1.0 +order Saccharomycetales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Saccharomycetales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 order Saccharomycetales root:Engineered:Lab Synthesis:Genetic cross 1.0 order Saccharomycetales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -order Saccharomycetales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Saccharomycetales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Saccharomycetales root:Host-associated:Insecta 1.0 order Saccharomycetales root:Engineered:Built environment 1.0 @@ -44325,7 +45540,7 @@ order Saccharomycetales root:Environmental:Aquatic:Marine:Intertidal zone:Mangro order Saccharomycetales root:Engineered:Biogas plant 1.0 order Saccharomycetales root:Engineered:Food production:Fermented vegetables 2.0 order Saccharomycetales root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 -order Cyprinodontiformes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +order Cyprinodontiformes root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 order Cyprinodontiformes root:Host-associated:Mammals:Digestive system 1.0 order Cyprinodontiformes root:Host-associated:Mammals:Digestive system:Stomach 1.0 order Cyprinodontiformes root:Engineered:Food production 1.0 @@ -44347,6 +45562,7 @@ order Pleosporales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Pleosporales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Pleosporales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Pleosporales root:Environmental:Air 1.0 +order Pleosporales root:Host-associated:Fungi 1.0 family Cryptosporidiidae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Cryptosporidiidae root:Engineered:Food production 1.0 family Cryptosporidiidae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -44367,11 +45583,12 @@ family Saccharomycetaceae root:Host-associated:Human:Digestive system:Large inte family Saccharomycetaceae root:Host-associated:Human 1.0 family Saccharomycetaceae root:Engineered:Bioreactor 1.0 family Saccharomycetaceae root:Engineered:Food production:Fermented beverages 1.0 +family Saccharomycetaceae root:Engineered:Food production:Dairy products 1.0 family Saccharomycetaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Saccharomycetaceae root:Engineered:Food production 1.0 family Saccharomycetaceae root:Host-associated:Insecta:Digestive system 1.0 -family Saccharomycetaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Saccharomycetaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Saccharomycetaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Saccharomycetaceae root:Host-associated:Insecta 1.0 genus Photobacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Photobacterium root:Environmental:Aquatic:Marine 7.0 @@ -44385,6 +45602,7 @@ genus Photobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Coral ree genus Photobacterium root:Environmental:Aquatic:Marine:Coastal 2.0 genus Photobacterium root:Engineered:Food production 4.0 genus Photobacterium root:Host-associated 1.0 +genus Photobacterium root:Host-associated:Fish:Digestive system 1.0 genus Photobacterium root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Photobacterium root:Engineered:Bioreactor:Continuous culture 1.0 genus Photobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 @@ -44406,6 +45624,7 @@ genus Aliivibrio root:Environmental:Aquatic:Marine:Sediment 1.0 genus Aliivibrio root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Aliivibrio root:Environmental:Aquatic:Estuary 3.0 genus Aliivibrio root:Engineered:Modeled 1.0 +genus Aliivibrio root:Host-associated:Fish:Digestive system 1.0 genus Aliivibrio root:Host-associated:Fish:Digestive system:Intestine 2.0 genus Aliivibrio root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 genus Aliivibrio root:Environmental:Aquatic:Aquaculture 1.0 @@ -44414,7 +45633,7 @@ genus Aliivibrio root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 genus Aliivibrio root:Host-associated:Annelida 1.0 genus Salmonella root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Salmonella root:Environmental:Aquatic:Marine:Sediment 2.0 -genus Salmonella root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Salmonella root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Salmonella root:Engineered:Lab Synthesis 1.0 genus Salmonella root:Engineered:Food production 3.0 genus Salmonella root:Host-associated:Human:Skin:Naris 1.0 @@ -44433,16 +45652,17 @@ genus Moritella root:Host-associated:Porifera 1.0 genus Moritella root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Moritella root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 species Photobacterium phosphoreum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Photobacterium phosphoreum root:Host-associated:Fish:Digestive system 1.0 species Photobacterium phosphoreum root:Host-associated:Fish:Digestive system:Intestine 1.0 species Propionibacterium freudenreichii root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Cryptosporidium parvum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Cryptosporidium parvum root:Engineered:Food production 1.0 species Vibrio rumoiensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Vibrio rumoiensis root:Host-associated:Plants:Rhizosphere 1.0 +species Vibrio rumoiensis root:Engineered:Lab enrichment 1.0 +species Vibrio rumoiensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Vibrio rumoiensis root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Vibrio rumoiensis root:Engineered:Food production 1.0 -species Vibrio rumoiensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Vibrio rumoiensis root:Engineered:Lab enrichment 1.0 species Vibrio rumoiensis root:Engineered:Food production:Fermented vegetables 1.0 species Fusobacterium nucleatum root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Fusobacterium nucleatum root:Host-associated:Human:Digestive system:Oral 1.0 @@ -44450,34 +45670,15 @@ species Fusobacterium nucleatum root:Host-associated:Human:Respiratory system:Pu species Fusobacterium nucleatum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Fusobacterium nucleatum root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Aliivibrio salmonicida root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Austrofundulus limnaeus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Austrofundulus limnaeus root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Austrofundulus limnaeus root:Host-associated:Amphibia 1.0 species Austrofundulus limnaeus root:Host-associated:Mammals:Digestive system:Stomach 1.0 species Austrofundulus limnaeus root:Engineered:Food production 1.0 -genus Sutterella root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 -genus Sutterella root:Host-associated:Mammals:Digestive system 1.0 -genus Sutterella root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Sutterella root:Host-associated:Plants 1.0 -genus Sutterella root:Host-associated:Human:Digestive system:Large intestine 1.0 -genus Sutterella root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -genus Sutterella root:Host-associated:Mammals 1.0 -genus Sutterella root:Host-associated:Human:Digestive system:Intestine 1.0 -genus Sutterella root:Engineered:Wastewater 1.0 -genus Sutterella root:Host-associated:Plants:Rhizosphere 2.0 -genus Sutterella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 -genus Sutterella root:Host-associated:Birds:Digestive system:Ceca 1.0 -genus Sutterella root:Host-associated:Human:Digestive system 4.0 -genus Sutterella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 6.0 -genus Sutterella root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Sutterella root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 -genus Sutterella root:Engineered:Bioreactor:Continuous culture 1.0 -genus Sutterella root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Sutterella root:Host-associated:Plants:Rhizome 1.0 -genus Sutterella root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Clostridium sp. CAG:288 root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Clostridium sp. CAG:288 root:Host-associated:Human:Digestive system:Large intestine 1.0 -genus Lachnospira root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +genus Lachnospira root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 genus Lachnospira root:Environmental:Aquatic:Sediment 1.0 +genus Lachnospira root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Lachnospira root:Host-associated:Birds:Digestive system:Ceca 1.0 genus Lachnospira root:Host-associated:Human:Digestive system 3.0 genus Lachnospira root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -44487,9 +45688,10 @@ species Lachnospira stercorisuis root:Host-associated:Human:Digestive system:Lar species Lachnospira stercorisuis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Streptococcus thermophilus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Streptococcus thermophilus root:Host-associated:Human:Digestive system:Oral 1.0 -species Streptococcus thermophilus root:Engineered:Food production:Dairy products 1.0 -species Lachnospiraceae bacterium TF01-11 root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 +species Streptococcus thermophilus root:Engineered:Food production:Dairy products 2.0 +species Lachnospiraceae bacterium TF01-11 root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 species Lachnospiraceae bacterium TF01-11 root:Host-associated:Human:Digestive system:Intestine 1.0 +species Lachnospiraceae bacterium TF01-11 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Lachnospiraceae bacterium TF01-11 root:Host-associated:Human:Digestive system 2.0 species Lachnospiraceae bacterium TF01-11 root:Environmental:Aquatic:Marine:Coastal 1.0 genus Peptococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 @@ -44497,20 +45699,21 @@ genus Peptococcus root:Host-associated:Plants:Rhizosphere 1.0 genus Peptococcus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Peptococcus root:Engineered:Food production 1.0 species Gracilibacter perfringens root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Gracilibacter perfringens root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Gracilibacter perfringens root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Gracilibacter perfringens root:Host-associated:Human:Digestive system 1.0 species Gracilibacter perfringens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Gracilibacter perfringens root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Peptococcus torques root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bifidobacterium acnes root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 -species Alistipes indistinctus root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Alistipes indistinctus root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Alistipes indistinctus root:Host-associated:Human:Digestive system:Large intestine 2.0 species Alistipes indistinctus root:Engineered:Wastewater:Activated Sludge 1.0 species Alistipes indistinctus root:Environmental:Terrestrial:Soil 1.0 +species Alistipes indistinctus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Alistipes indistinctus root:Host-associated:Human:Digestive system 1.0 species Alistipes indistinctus root:Environmental:Terrestrial 1.0 species Alistipes indistinctus root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 -species Bifidobacterium bifidum root:Host-associated:Human:Digestive system:Large intestine:Fecal 15.0 +species Bifidobacterium bifidum root:Host-associated:Human:Digestive system:Large intestine:Fecal 16.0 species Bifidobacterium bifidum root:Host-associated:Human:Reproductive system:Vagina 1.0 species Bifidobacterium bifidum root:Host-associated:Human:Digestive system 2.0 species Bifidobacterium bifidum root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 @@ -44518,11 +45721,11 @@ species Blautia tyrobutyricum root:Host-associated:Human:Digestive system:Large species Blautia tyrobutyricum root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Blautia tyrobutyricum root:Host-associated:Mammals:Milk 1.0 species Halothiobacillus caviae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Roseburia inulinivorans root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 +species Roseburia inulinivorans root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Roseburia inulinivorans root:Host-associated:Human:Digestive system:Large intestine 1.0 species Roseburia inulinivorans root:Host-associated:Human:Digestive system 3.0 species Roseburia inulinivorans root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Streptococcus salivarius root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +species Streptococcus salivarius root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Streptococcus salivarius root:Host-associated:Human:Digestive system:Large intestine 1.0 species Streptococcus salivarius root:Host-associated:Human:Digestive system 1.0 genus Libanicoccus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -44545,7 +45748,7 @@ species Parabacteroides distasonis root:Host-associated:Human:Digestive system 1 species Parabacteroides distasonis root:Host-associated:Insecta:Digestive system 1.0 species Parabacteroides distasonis root:Host-associated 1.0 species Parabacteroides merdae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -genus Klebsiella root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 +genus Klebsiella root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 genus Klebsiella root:Host-associated:Mammals:Digestive system 1.0 genus Klebsiella root:Host-associated:Plants 3.0 genus Klebsiella root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -44564,6 +45767,7 @@ genus Klebsiella root:Engineered:Food production:Fermented seafood 1.0 genus Klebsiella root:Engineered:Wastewater:Industrial wastewater 1.0 genus Klebsiella root:Host-associated:Insecta:Digestive system 1.0 genus Klebsiella root:Environmental:Terrestrial:Soil:Sand 1.0 +genus Klebsiella root:Engineered:Wastewater:Water and sludge 1.0 genus Klebsiella root:Host-associated:Plants:Phylloplane:Endophytes 1.0 genus Klebsiella root:Engineered:Built environment 3.0 genus Klebsiella root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -44574,7 +45778,7 @@ genus Klebsiella root:Host-associated:Human:Circulatory system:Blood 1.0 genus Klebsiella root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Klebsiella root:Host-associated:Algae:Brown Algae 1.0 genus Finegoldia root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 -genus Finegoldia root:Host-associated:Human 1.0 +genus Finegoldia root:Host-associated:Human 2.0 genus Finegoldia root:Host-associated:Human:Digestive system:Large intestine 1.0 genus Finegoldia root:Host-associated:Human:Skin 9.0 genus Finegoldia root:Host-associated:Mammals 1.0 @@ -44585,7 +45789,7 @@ genus Finegoldia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Finegoldia root:Host-associated:Insecta 1.0 genus Finegoldia root:Engineered:Built environment 2.0 species Finegoldia magna root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -species Finegoldia magna root:Host-associated:Human 1.0 +species Finegoldia magna root:Host-associated:Human 2.0 species Finegoldia magna root:Host-associated:Human:Digestive system:Large intestine 1.0 species Finegoldia magna root:Host-associated:Human:Skin 6.0 species Finegoldia magna root:Host-associated:Human:Digestive system 1.0 @@ -44599,7 +45803,7 @@ species Varibaculum cambriense root:Host-associated:Human:Digestive system:Large species Cutibacterium avidum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Cutibacterium avidum root:Host-associated:Human 2.0 species Cutibacterium avidum root:Host-associated:Human:Digestive system:Large intestine 1.0 -species Bifidobacterium dentium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Bifidobacterium dentium root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Bifidobacterium dentium root:Host-associated:Mammals:Digestive system 1.0 species Bifidobacterium dentium root:Host-associated:Human:Digestive system:Large intestine 1.0 species Actinomyces odontolyticus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -44609,113 +45813,11 @@ species Deinococcus radiodurans root:Host-associated:Human:Digestive system:Larg species Deinococcus radiodurans root:Host-associated:Human:Digestive system 1.0 species Phocea massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Phocea massiliensis root:Host-associated:Human:Digestive system 1.0 -species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system:Intestine 1.0 -species Firmicutes bacterium CAG:24053 14 root:Host-associated:Human:Digestive system 1.0 species Rhodobacter sphaeroides root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Rhodobacter sphaeroides root:Host-associated:Human:Digestive system 1.0 species Rhodobacter sphaeroides root:Engineered:Modeled 1.0 -family Bradyrhizobiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Geologic 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Forest soil 15.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Lentic:Brackish 2.0 -family Bradyrhizobiaceae root:Host-associated:Plants 6.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Agricultural 20.0 -family Bradyrhizobiaceae root:Engineered:Bioreactor 3.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -family Bradyrhizobiaceae root:Engineered:Wastewater:Activated Sludge 5.0 -family Bradyrhizobiaceae root:Host-associated:Human:Skin 3.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Permafrost 5.0 -family Bradyrhizobiaceae root:Host-associated:Mammals 4.0 -family Bradyrhizobiaceae root:Host-associated:Amphibia 1.0 -family Bradyrhizobiaceae root:Engineered:Wastewater 3.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Contaminated 7.0 -family Bradyrhizobiaceae root:Host-associated:Plants:Phylloplane 1.0 -family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere 22.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil 65.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Sediment 4.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Wetlands 3.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Grasslands 8.0 -family Bradyrhizobiaceae root:Host-associated:Human:Digestive system 2.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater 2.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Drinking water 2.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Desert 5.0 -family Bradyrhizobiaceae root:Host-associated:Plants:Root 4.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Deep subsurface 1.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere:Soil 9.0 -family Bradyrhizobiaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 -family Bradyrhizobiaceae root:Host-associated:Plants:Rhizosphere:Forest soil 5.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -family Bradyrhizobiaceae root:Engineered:Wastewater:Industrial wastewater 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Mine 2.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 -family Bradyrhizobiaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 -family Bradyrhizobiaceae root:Engineered:Bioreactor:Continuous culture 3.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -family Bradyrhizobiaceae root:Engineered:Wastewater:Water and sludge 2.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Crop 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 -family Bradyrhizobiaceae root:Host-associated:Insecta 1.0 -family Bradyrhizobiaceae root:Engineered:Built environment 3.0 -family Bradyrhizobiaceae root:Engineered:Lab enrichment 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Boreal forest 1.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -family Bradyrhizobiaceae root:Engineered 1.0 -family Bradyrhizobiaceae root:Host-associated:Fungi 1.0 -family Bradyrhizobiaceae root:Engineered:Bioremediation 2.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 -family Bradyrhizobiaceae root:Engineered:Biotransformation 1.0 -family Bradyrhizobiaceae root:Host-associated:Human:Circulatory system 1.0 -family Bradyrhizobiaceae root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 -family Bradyrhizobiaceae root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 -family Bradyrhizobiaceae root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 -genus Bradyrhizobium root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -genus Bradyrhizobium root:Environmental:Aquatic:Marine 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Forest soil 6.0 -genus Bradyrhizobium root:Host-associated:Plants 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Agricultural 4.0 -genus Bradyrhizobium root:Engineered:Bioreactor 1.0 -genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Bradyrhizobium root:Host-associated:Human:Skin 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Permafrost 2.0 -genus Bradyrhizobium root:Host-associated:Mammals 1.0 -genus Bradyrhizobium root:Host-associated:Amphibia 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Contaminated 1.0 -genus Bradyrhizobium root:Host-associated:Plants:Phylloplane 1.0 -genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere 6.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil 17.0 -genus Bradyrhizobium root:Environmental:Aquatic:Marine:Sediment 3.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Bradyrhizobium root:Host-associated:Human:Digestive system 1.0 -genus Bradyrhizobium root:Environmental:Aquatic:Freshwater 2.0 -genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Drinking water 2.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 -genus Bradyrhizobium root:Host-associated:Plants:Rhizosphere:Forest soil 4.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 -genus Bradyrhizobium root:Host-associated:Reptile:Oral cavity 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Crop 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -genus Bradyrhizobium root:Engineered:Built environment 1.0 -genus Bradyrhizobium root:Engineered 1.0 -genus Bradyrhizobium root:Engineered:Bioremediation 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 -genus Bradyrhizobium root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 -genus Bradyrhizobium root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 species Clostridium paraputrificum root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 -species Klebsiella pneumoniae root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 +species Klebsiella pneumoniae root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 species Klebsiella pneumoniae root:Host-associated:Human 1.0 species Klebsiella pneumoniae root:Environmental:Aquatic:Estuary:Sediment 1.0 species Klebsiella pneumoniae root:Host-associated:Human:Digestive system:Large intestine 3.0 @@ -44724,6 +45826,7 @@ species Klebsiella pneumoniae root:Mixed 1.0 species Klebsiella pneumoniae root:Host-associated:Mammals 1.0 species Klebsiella pneumoniae root:Engineered:Lab Synthesis 1.0 species Klebsiella pneumoniae root:Host-associated:Human:Digestive system 1.0 +species Klebsiella pneumoniae root:Engineered:Wastewater:Water and sludge 1.0 species Klebsiella pneumoniae root:Engineered:Built environment 4.0 species Klebsiella pneumoniae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Klebsiella pneumoniae root:Engineered:Food production:Fermented vegetables 1.0 @@ -44763,7 +45866,7 @@ family Rhizobiaceae root:Environmental:Terrestrial:Geologic 1.0 family Rhizobiaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Rhizobiaceae root:Environmental:Aquatic:Lentic:Brackish 3.0 family Rhizobiaceae root:Host-associated:Human 1.0 -family Rhizobiaceae root:Host-associated:Plants 10.0 +family Rhizobiaceae root:Host-associated:Plants 11.0 family Rhizobiaceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 family Rhizobiaceae root:Engineered:Bioreactor 5.0 family Rhizobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -44777,9 +45880,10 @@ family Rhizobiaceae root:Host-associated:Plants:Rhizosphere 15.0 family Rhizobiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Rhizobiaceae root:Environmental:Terrestrial:Soil 8.0 family Rhizobiaceae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Rhizobiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Rhizobiaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 family Rhizobiaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Rhizobiaceae root:Host-associated:Porifera 1.0 +family Rhizobiaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Rhizobiaceae root:Host-associated:Human:Digestive system 1.0 family Rhizobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Rhizobiaceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -44787,7 +45891,6 @@ family Rhizobiaceae root:Host-associated:Mammals:Digestive system:Large intestin family Rhizobiaceae root:Host-associated:Plants:Root 5.0 family Rhizobiaceae root:Engineered:Food production 2.0 family Rhizobiaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -family Rhizobiaceae root:Host-associated:Plants:Rhizosphere:Soil 4.0 family Rhizobiaceae root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 family Rhizobiaceae root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 family Rhizobiaceae root:Host-associated:Insecta:Digestive system 1.0 @@ -44805,6 +45908,7 @@ family Rhizobiaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Rhizobiaceae root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 family Rhizobiaceae root:Engineered:Food production:Fermented vegetables 2.0 family Rhizobiaceae root:Host-associated:Plants:Rhizome 1.0 +family Rhizobiaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Rhizobiaceae root:Engineered:Biotransformation 1.0 genus Coccomyxa root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Coccomyxa root:Environmental:Terrestrial:Soil:Forest soil 2.0 @@ -44823,6 +45927,7 @@ genus Coccomyxa root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Coccomyxa root:Host-associated:Insecta:Digestive system 1.0 genus Coccomyxa root:Environmental:Aquatic:Freshwater:Groundwater 2.0 genus Coccomyxa root:Environmental:Aquatic:Marine:Intertidal zone 1.0 +genus Coccomyxa root:Host-associated:Fungi 1.0 genus Coccomyxa root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus Coccomyxa root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 genus FFCH10602 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -44873,28 +45978,19 @@ species FFCH10602 ferruginea root:Environmental:Terrestrial:Soil:Grasslands 1.0 species FFCH10602 ferruginea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Dialister thermophilum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Turicibacter anginosus root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 -species Ruminococcus albus root:Host-associated:Human:Digestive system:Large intestine:Fecal 10.0 +species Ruminococcus albus root:Host-associated:Human:Digestive system:Large intestine:Fecal 11.0 species Ruminococcus albus root:Host-associated:Human:Digestive system:Large intestine 1.0 -species Ruminococcus albus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +species Ruminococcus albus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 species Clostridiales bacterium 42 27 root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Roseburia hominis root:Host-associated:Human:Digestive system:Large intestine:Fecal 8.0 species Roseburia hominis root:Host-associated:Human:Digestive system:Intestine 1.0 species Roseburia hominis root:Host-associated:Human:Digestive system 2.0 species Roseburia hominis root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Bacteroides caccae root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +species Bacteroides caccae root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 species Bacteroides caccae root:Host-associated:Human:Digestive system:Large intestine 1.0 species Bacteroides caccae root:Host-associated:Human:Digestive system:Intestine 2.0 species Bacteroides caccae root:Host-associated:Human:Digestive system 1.0 species Raoultibacter timonensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 -species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine 1.0 -species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Intestine 1.0 -species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system 2.0 -species Blautia hydrogenotrophica root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -species Blautia hydrogenotrophica root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -species Blautia hydrogenotrophica root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Blautia hydrogenotrophica root:Engineered:Lab enrichment 1.0 -species Blautia hydrogenotrophica root:Host-associated:Animal:Digestive system:Fecal 1.0 species Gracilibacter ethanoligenes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Turicibacter infantis root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 species Turicibacter infantis root:Engineered:Solid waste:Composting 1.0 @@ -44917,6 +46013,9 @@ species Dialister propionicifaciens root:Host-associated:Human:Digestive system: species Dialister propionicifaciens root:Host-associated:Human:Skin 3.0 species Dialister propionicifaciens root:Host-associated:Mammals 1.0 species Dialister propionicifaciens root:Host-associated:Human:Reproductive system:Vagina 4.0 +species Butyricicoccus faecihominis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Butyricicoccus faecihominis root:Engineered:Lab enrichment 1.0 +species Paraprevotella xylaniphila root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Aggregatibacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Aggregatibacter root:Host-associated:Human:Digestive system:Oral 2.0 genus Aggregatibacter root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 @@ -44942,6 +46041,7 @@ species Aggregatibacter porcinus root:Host-associated:Human:Digestive system:Lar species Ruminococcus sp. UNK.MGS-30 root:Host-associated:Human:Digestive system:Large intestine:Fecal 9.0 species Ruminococcus sp. UNK.MGS-30 root:Host-associated:Human:Digestive system:Large intestine 1.0 species Ruminococcus sp. UNK.MGS-30 root:Host-associated:Human:Digestive system 2.0 +species Ruminococcus sp. UNK.MGS-30 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 class Fusobacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 class Fusobacteria root:Host-associated:Human 1.0 class Fusobacteria root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -44950,7 +46050,7 @@ class Fusobacteria root:Host-associated:Animal:Digestive system 1.0 species Daphnia pulicaria root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Daphnia pulicaria root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Daphnia pulicaria root:Environmental:Aquatic:Estuary 1.0 -species Dakarella massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 +species Dakarella massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 7.0 species Dakarella massiliensis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Dakarella massiliensis root:Host-associated:Human:Digestive system 3.0 species Daphnia magna root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -44965,12 +46065,12 @@ species Daphnia magna root:Environmental:Terrestrial:Soil:Crop 1.0 species Daphnia magna root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 species Actinobacillus pleuropneumoniae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Butyricicoccus pullicaecorum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Butyricicoccus pullicaecorum root:Engineered:Lab enrichment 1.0 species Butyricicoccus pullicaecorum root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Butyricicoccus pullicaecorum root:Host-associated:Birds:Digestive system:Ceca 3.0 species Butyricicoccus pullicaecorum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Butyricicoccus pullicaecorum root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 3.0 species Butyricicoccus pullicaecorum root:Host-associated:Birds:Digestive system 3.0 -species Butyricicoccus pullicaecorum root:Engineered:Lab enrichment 1.0 species Butyricicoccus pullicaecorum root:Host-associated:Birds 2.0 species Terrisporobacter othiniensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Terrisporobacter othiniensis root:Host-associated:Human:Digestive system 1.0 @@ -44982,8 +46082,10 @@ genus Anaerostipes root:Host-associated:Human:Digestive system:Large intestine:F genus Anaerostipes root:Host-associated:Mammals:Digestive system 1.0 genus Anaerostipes root:Host-associated:Human 1.0 genus Anaerostipes root:Host-associated:Human:Digestive system:Large intestine 1.0 +genus Anaerostipes root:Host-associated:Human:Digestive system:Intestine 1.0 genus Anaerostipes root:Host-associated:Human:Digestive system 2.0 genus Anaerostipes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Anaerostipes root:Host-associated:Mammals:Digestive system:Large intestine 1.0 genus Anaerostipes root:Host-associated:Animal:Digestive system 1.0 genus Anaerostipes root:Host-associated:Birds:Digestive system 1.0 genus Anaerostipes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -45010,6 +46112,7 @@ genus Anaerococcus root:Environmental:Aquatic:Marine:Sediment 3.0 genus Anaerococcus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Anaerococcus root:Engineered:Solid waste:Composting 1.0 genus Anaerococcus root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 +genus Anaerococcus root:Engineered:Food production:Fermented seafood 1.0 genus Anaerococcus root:Host-associated:Human:Reproductive system:Female 1.0 genus Anaerococcus root:Engineered:Wastewater:Water and sludge 1.0 genus Anaerococcus root:Engineered:Built environment 7.0 @@ -45029,12 +46132,13 @@ family Leuconostocaceae root:Host-associated:Mammals:Digestive system 1.0 family Leuconostocaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Leuconostocaceae root:Host-associated:Plants 1.0 family Leuconostocaceae root:Engineered:Bioreactor 2.0 -family Leuconostocaceae root:Engineered:Food production:Fermented beverages 4.0 +family Leuconostocaceae root:Engineered:Food production:Fermented beverages 5.0 family Leuconostocaceae root:Engineered:Wastewater 1.0 -family Leuconostocaceae root:Engineered:Food production:Dairy products 10.0 +family Leuconostocaceae root:Engineered:Food production:Dairy products 11.0 family Leuconostocaceae root:Host-associated:Plants:Phylloplane 1.0 family Leuconostocaceae root:Environmental:Terrestrial:Soil 1.0 family Leuconostocaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Leuconostocaceae root:Engineered:Lab enrichment 2.0 family Leuconostocaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Leuconostocaceae root:Engineered:Solid waste:Composting 1.0 family Leuconostocaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 @@ -45049,7 +46153,6 @@ family Leuconostocaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Leuconostocaceae root:Engineered:Wastewater:Water and sludge 2.0 family Leuconostocaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Leuconostocaceae root:Host-associated:Insecta 1.0 -family Leuconostocaceae root:Engineered:Lab enrichment 2.0 family Leuconostocaceae root:Engineered:Food production:Fermented vegetables 7.0 family Leuconostocaceae root:Engineered 1.0 family Leuconostocaceae root:Environmental:Air 1.0 @@ -45065,6 +46168,7 @@ family Yersiniaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Yersiniaceae root:Mixed 1.0 family Yersiniaceae root:Host-associated:Human:Digestive system:Oral 1.0 family Yersiniaceae root:Environmental:Terrestrial:Soil 1.0 +family Yersiniaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Yersiniaceae root:Engineered:Food production 1.0 family Yersiniaceae root:Host-associated:Insecta:Digestive system 3.0 family Yersiniaceae root:Engineered:Food production:Fermented vegetables 1.0 @@ -45072,9 +46176,9 @@ family Yersiniaceae root:Host-associated:Human:Circulatory system 1.0 genus Leuconostoc root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Leuconostoc root:Environmental:Aquatic:Marine 1.0 genus Leuconostoc root:Engineered:Bioreactor 1.0 -genus Leuconostoc root:Engineered:Food production:Fermented beverages 2.0 +genus Leuconostoc root:Engineered:Food production:Fermented beverages 3.0 genus Leuconostoc root:Engineered:Wastewater 1.0 -genus Leuconostoc root:Engineered:Food production:Dairy products 10.0 +genus Leuconostoc root:Engineered:Food production:Dairy products 11.0 genus Leuconostoc root:Host-associated:Plants:Phylloplane 1.0 genus Leuconostoc root:Environmental:Terrestrial:Soil 1.0 genus Leuconostoc root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -45093,11 +46197,9 @@ species Serratia sp. Ag1 root:Environmental:Aquatic:Marine 3.0 species Serratia sp. Ag1 root:Environmental:Aquatic:Lentic:Brackish 2.0 species Serratia sp. Ag1 root:Host-associated:Human:Skin 1.0 species Serratia sp. Ag1 root:Host-associated:Human:Circulatory system 1.0 -species Butyricicoccus faecihominis root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -species Butyricicoccus faecihominis root:Engineered:Lab enrichment 1.0 species Bacteroides sp. Marseille-P3208T root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bacteroides sp. Marseille-P3208T root:Host-associated:Human:Digestive system:Intestine 1.0 -species Eubacterium ventriosum root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Eubacterium ventriosum root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Eubacterium ventriosum root:Host-associated:Human:Digestive system:Large intestine 1.0 species Eubacterium ventriosum root:Host-associated:Human:Digestive system:Intestine 1.0 species Eubacterium ventriosum root:Host-associated:Human:Digestive system 1.0 @@ -45174,16 +46276,18 @@ family Barnesiellaceae root:Host-associated:Human:Digestive system 1.0 family Barnesiellaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Barnesiellaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Barnesiellaceae root:Host-associated:Birds 2.0 +family Barnesiellaceae root:Host-associated:Mammals:Digestive system:Foregut 1.0 species Ruminococcaceae bacterium Marseille-P3738 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Ruminococcaceae bacterium Marseille-P3738 root:Engineered:Lab enrichment:Defined media 1.0 species Clostridium sp. CE6 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Proteus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Proteus root:Host-associated:Human:Skin 1.0 +genus Proteus root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Proteus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Proteus root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 genus Proteus root:Host-associated:Human:Circulatory system:Blood 1.0 genus Proteus root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 -genus Enterobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +genus Enterobacter root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 genus Enterobacter root:Host-associated:Plants 2.0 genus Enterobacter root:Mixed 1.0 genus Enterobacter root:Host-associated:Mammals 1.0 @@ -45193,7 +46297,7 @@ genus Enterobacter root:Engineered:Modeled:Simulated communities (microbial mixt genus Enterobacter root:Engineered:Food production 2.0 genus Enterobacter root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Enterobacter root:Host-associated:Insecta:Digestive system 1.0 -genus Enterobacter root:Engineered:Built environment 1.0 +genus Enterobacter root:Engineered:Built environment 2.0 genus Enterobacter root:Host-associated:Mammals:Respiratory system 1.0 genus Enterobacter root:Host-associated:Human:Circulatory system:Blood 2.0 genus Enterobacter root:Host-associated:Annelida 1.0 @@ -45212,7 +46316,7 @@ species Acinetobacter skyensis root:Host-associated:Human:Skin 1.0 species Acinetobacter skyensis root:Host-associated:Amphibia 1.0 species Acinetobacter skyensis root:Engineered:Food production 1.0 species Acinetobacter skyensis root:Host-associated:Insecta 1.0 -species Enterobacter cloacae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Enterobacter cloacae root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Enterobacter cloacae root:Engineered:Lab Synthesis 1.0 species Enterobacter cloacae root:Host-associated:Insecta:Digestive system 1.0 species Enterobacter cloacae root:Host-associated:Human:Circulatory system:Blood 1.0 @@ -45222,12 +46326,12 @@ species Pseudomonas alcaligenes root:Environmental:Aquatic:Marine:Coastal:Sedime species Pseudomonas alcaligenes root:Environmental:Terrestrial:Soil 2.0 species Pseudomonas alcaligenes root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Pseudomonas alcaligenes root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 -species Pseudomonas alcaligenes root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas alcaligenes root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Pseudomonas alcaligenes root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas alcaligenes root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Pseudomonas alcaligenes root:Environmental:Aquatic:Marine:Intertidal zone 1.0 species Pseudomonas alcaligenes root:Engineered 1.0 -genus Butyricimonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 5.0 +genus Butyricimonas root:Host-associated:Human:Digestive system:Large intestine:Fecal 6.0 genus Butyricimonas root:Host-associated:Mammals:Digestive system 1.0 genus Butyricimonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Butyricimonas root:Host-associated:Human:Digestive system 1.0 @@ -45266,6 +46370,7 @@ class Thaumarchaeota root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 class Thaumarchaeota root:Host-associated:Porifera 1.0 class Thaumarchaeota root:Environmental:Terrestrial:Soil:Wetlands 2.0 class Thaumarchaeota root:Environmental:Terrestrial:Soil:Grasslands 1.0 +class Thaumarchaeota root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Thaumarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 class Thaumarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class Thaumarchaeota root:Environmental:Aquatic:Marine:Coastal 3.0 @@ -45273,7 +46378,6 @@ class Thaumarchaeota root:Environmental:Terrestrial:Soil:Desert 3.0 class Thaumarchaeota root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 class Thaumarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Thaumarchaeota root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 -class Thaumarchaeota root:Host-associated:Plants:Rhizosphere:Soil 3.0 class Thaumarchaeota root:Environmental:Aquatic:Estuary 1.0 class Thaumarchaeota root:Host-associated:Animal:Digestive system 1.0 class Thaumarchaeota root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -45301,10 +46405,12 @@ genus Methanosphaera root:Host-associated:Human:Digestive system:Large intestine genus Methanosphaera root:Environmental:Aquatic:Marine 2.0 genus Methanosphaera root:Host-associated:Mammals:Digestive system 1.0 genus Methanosphaera root:Engineered:Bioreactor 2.0 +genus Methanosphaera root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Methanosphaera root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 genus Methanosphaera root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Methanosphaera root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Scardovia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +genus Scardovia root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species Methanobrevibacter bryantii root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Methanobrevibacter bryantii root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Methanobrevibacter bryantii root:Engineered:Bioreactor 1.0 @@ -45326,7 +46432,7 @@ species Roseburia formicigenerans root:Host-associated:Human:Digestive system:La species [Ruminococcus] faecis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Actinomyces sp. HMSC065F12 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Campylobacter ureolyticus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Campylobacter ureolyticus root:Host-associated:Human 2.0 +species Campylobacter ureolyticus root:Host-associated:Human 3.0 species Campylobacter ureolyticus root:Host-associated:Human:Reproductive system:Vagina 1.0 species Bacteroides thetaiotaomicron root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Bacteroides thetaiotaomicron root:Host-associated:Mammals:Digestive system 1.0 @@ -45439,6 +46545,23 @@ species Clostridiales bacterium 52 15 root:Environmental:Aquatic:Freshwater:Grou species Lactobacillus gasseri root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Lactobacillus gasseri root:Host-associated:Human 1.0 species Lactobacillus gasseri root:Host-associated:Human:Reproductive system:Vagina 1.0 +order Haptorida root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +order Haptorida root:Environmental:Aquatic:Marine 6.0 +order Haptorida root:Environmental:Aquatic:Marine:Oceanic 1.0 +order Haptorida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +order Haptorida root:Environmental:Aquatic:Marine:Sediment 2.0 +order Haptorida root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order Haptorida root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +order Haptorida root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 +genus Butyrivibrio root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +genus Butyrivibrio root:Host-associated:Mammals:Digestive system 2.0 +genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 +genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 +genus Butyrivibrio root:Host-associated:Animal:Digestive system 1.0 +genus Butyrivibrio root:Host-associated 1.0 +genus Butyrivibrio root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Peptostreptococcus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Peptostreptococcus root:Engineered:Bioreactor 1.0 genus Peptostreptococcus root:Host-associated:Human:Skin 1.0 @@ -45446,6 +46569,8 @@ genus Peptostreptococcus root:Host-associated:Human:Reproductive system:Vagina 1 genus Peptostreptococcus root:Host-associated:Human:Digestive system:Oral 3.0 genus Peptostreptococcus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Peptostreptococcus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 +genus Peptostreptococcus root:Engineered:Food production:Fermented seafood 1.0 +genus Peptostreptococcus root:Host-associated:Arthropoda:Digestive system:Oral 1.0 genus Peptostreptococcus root:Engineered:Solid waste:Composting:Bioreactor 1.0 species Peptostreptococcus anaerobius root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Peptostreptococcus anaerobius root:Engineered:Bioreactor 1.0 @@ -45467,7 +46592,7 @@ species Fenollaria timonensis root:Host-associated:Human:Reproductive system:Vag genus Asteroleplasma root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Asteroleplasma root:Host-associated:Mammals:Gastrointestinal tract 1.0 genus Asteroleplasma root:Engineered:Biogas plant 1.0 -species Libanicoccus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +species Libanicoccus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Libanicoccus massiliensis root:Host-associated:Mammals:Digestive system 1.0 species Libanicoccus massiliensis root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Megamonas funiformis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -45493,7 +46618,7 @@ species Prevotella buccalis root:Host-associated:Human:Digestive system:Large in species Prevotella buccalis root:Engineered:Built environment 1.0 species Prevotellaceae bacterium Marseille-P2831 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Prevotellaceae bacterium Marseille-P2831 root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 -species Sutterella sp. YIT 12072 root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +species Sutterella sp. YIT 12072 root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 species Sutterella sp. YIT 12072 root:Host-associated:Human:Digestive system:Large intestine 1.0 species Sutterella sp. YIT 12072 root:Mixed 1.0 species Sutterella sp. YIT 12072 root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 @@ -45515,10 +46640,10 @@ species Musa acuminata subsp. malaccensis root:Host-associated:Human:Digestive s species Musa acuminata subsp. malaccensis root:Environmental:Aquatic:Sediment 1.0 species Musa acuminata subsp. malaccensis root:Engineered:Built environment 1.0 species Musa acuminata subsp. malaccensis root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 -phylum Parabasalia root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 +phylum Parabasalia root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 phylum Parabasalia root:Host-associated:Human:Digestive system 1.0 class Bigyra root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -class Bigyra root:Environmental:Aquatic:Marine 3.0 +class Bigyra root:Environmental:Aquatic:Marine 6.0 class Bigyra root:Environmental:Aquatic:Freshwater 1.0 class Bigyra root:Environmental:Terrestrial:Deep subsurface 1.0 order Opalinata root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -45529,6 +46654,7 @@ family Blastocystidae root:Host-associated:Human:Digestive system:Large intestin family Dientamoebidae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Merismopediaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Merismopediaceae root:Host-associated:Mammals 1.0 +family Merismopediaceae root:Host-associated:Human:Digestive system:Intestine 1.0 family Merismopediaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Merismopediaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Merismopediaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 @@ -45551,7 +46677,7 @@ species Clostridium sp. T2 root:Host-associated:Human:Digestive system:Large int species Clostridium sp. T2 root:Host-associated:Mammals:Digestive system 1.0 species Clostridium sp. T2 root:Host-associated:Human:Digestive system 1.0 species Porphyromonas sp. HMSC065F10 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Porphyromonas sp. HMSC065F10 root:Host-associated:Human 3.0 +species Porphyromonas sp. HMSC065F10 root:Host-associated:Human 4.0 species Porphyromonas sp. HMSC065F10 root:Host-associated:Human:Skin 4.0 species Porphyromonas sp. HMSC065F10 root:Host-associated:Human:Reproductive system:Vagina 6.0 species Porphyromonas sp. HMSC065F10 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -45583,7 +46709,7 @@ species Lactobacillus acidophilus root:Host-associated:Human:Reproductive system species Lactobacillus acidophilus root:Engineered:Lab Synthesis:Genetic cross 1.0 species Butyricimonas sp. AT11 root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Butyricimonas sp. AT11 root:Host-associated:Human:Digestive system:Large intestine 1.0 -species Fusobacterium mortiferum root:Host-associated:Human:Digestive system:Large intestine:Fecal 3.0 +species Fusobacterium mortiferum root:Host-associated:Human:Digestive system:Large intestine:Fecal 4.0 species Fusobacterium mortiferum root:Host-associated:Human:Digestive system:Large intestine 1.0 species Fusobacterium mortiferum root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Succinivibrio dextrinosolvens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -45601,6 +46727,7 @@ genus Tepidibacter root:Engineered:Biogas plant 1.0 genus Tepidibacter root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 species Tepidibacter anaerobius root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Tissierellia bacterium S7-1-4 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Tissierellia bacterium S7-1-4 root:Host-associated:Human 1.0 species Tissierellia bacterium S7-1-4 root:Host-associated:Human:Skin 1.0 species Tissierellia bacterium S7-1-4 root:Host-associated:Human:Reproductive system:Vagina 1.0 species Porphyromonas bennonis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -45609,6 +46736,7 @@ species Porphyromonas bennonis root:Engineered:Built environment 1.0 species Clostridiales bacterium Marseille-P2986 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Proteus mirabilis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Proteus mirabilis root:Mixed 1.0 +species Proteus mirabilis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Blastocystis hominis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Blastocystis hominis root:Host-associated:Birds:Digestive system:Ceca 1.0 species Blastocystis hominis root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 2.0 @@ -45701,7 +46829,7 @@ species Faecalitalea cylindroides root:Host-associated:Human:Digestive system:La species Faecalitalea cylindroides root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Urmitella timonensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Cnidaria root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -phylum Cnidaria root:Environmental:Aquatic:Marine 72.0 +phylum Cnidaria root:Environmental:Aquatic:Marine 74.0 phylum Cnidaria root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Cnidaria root:Environmental:Aquatic:Marine:Oceanic 15.0 phylum Cnidaria root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -45725,8 +46853,8 @@ phylum Cnidaria root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 phylum Cnidaria root:Environmental:Aquatic:Estuary 6.0 phylum Cnidaria root:Environmental:Aquatic:Marine:Marginal Sea 3.0 phylum Cnidaria root:Environmental:Aquatic:Marine:Pelagic 2.0 -phylum Cnidaria root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Cnidaria root:Host-associated:Invertebrates:Cnidaria:Coral 9.0 +phylum Cnidaria root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Cnidaria root:Host-associated:Arthropoda 1.0 phylum Cnidaria root:Environmental:Terrestrial:Soil:Loam 1.0 phylum Cnidaria root:Host-associated:Microbial:Bacteria 1.0 @@ -45750,8 +46878,8 @@ species Rhodoplanes australicum root:Host-associated:Plants:Rhizosphere 1.0 species Rhodoplanes australicum root:Environmental:Terrestrial:Soil 15.0 species Rhodoplanes australicum root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Rhodoplanes australicum root:Environmental:Terrestrial:Soil:Wetlands 1.0 -species Rhodoplanes australicum root:Host-associated:Plants:Root 2.0 species Rhodoplanes australicum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Rhodoplanes australicum root:Host-associated:Plants:Root 2.0 species Rhodoplanes australicum root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 species Rhodoplanes australicum root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Rhodoplanes australicum root:Host-associated:Insecta 1.0 @@ -45854,19 +46982,22 @@ family Debaryomycetaceae root:Host-associated:Human:Digestive system:Large intes family Debaryomycetaceae root:Environmental:Aquatic:Marine 1.0 family Debaryomycetaceae root:Mixed 1.0 family Debaryomycetaceae root:Host-associated:Human:Digestive system:Oral 1.0 -family Debaryomycetaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +family Debaryomycetaceae root:Engineered:Lab enrichment 1.0 family Debaryomycetaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Debaryomycetaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Debaryomycetaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Candida root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 genus Candida root:Mixed 1.0 genus Candida root:Host-associated:Human:Digestive system:Oral 1.0 +genus Candida root:Engineered:Lab enrichment 1.0 genus Candida root:Host-associated:Human:Digestive system 1.0 -genus Candida root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Candida root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Candida root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Candida root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Candida root:Engineered:Food production:Fermented vegetables 1.0 species Candida albicans root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Candida albicans root:Host-associated:Human:Digestive system:Oral 1.0 +species Candida albicans root:Engineered:Lab enrichment 1.0 species Candida albicans root:Host-associated:Human:Digestive system 1.0 species Leuconostoc citreum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Leuconostoc citreum root:Engineered:Food production 2.0 @@ -45878,7 +47009,7 @@ species Anaerococcus sp. Marseille-P2143 root:Engineered:Built environment 1.0 species Peptoniphilus sp. EL1 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Peptoniphilus sp. EL1 root:Host-associated:Insecta 1.0 class Deinococci root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -class Deinococci root:Environmental:Aquatic:Marine 6.0 +class Deinococci root:Environmental:Aquatic:Marine 7.0 class Deinococci root:Environmental:Aquatic:Marine:Oceanic 1.0 class Deinococci root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 16.0 class Deinococci root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -45889,14 +47020,15 @@ class Deinococci root:Engineered:Wastewater:Activated Sludge 3.0 class Deinococci root:Host-associated:Human:Skin 3.0 class Deinococci root:Mixed 4.0 class Deinococci root:Host-associated:Mammals 1.0 -class Deinococci root:Engineered:Food production:Fermented beverages 2.0 +class Deinococci root:Engineered:Food production:Fermented beverages 3.0 class Deinococci root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 class Deinococci root:Host-associated:Human:Digestive system:Oral 1.0 class Deinococci root:Engineered:Food production:Dairy products 7.0 class Deinococci root:Host-associated:Plants:Phylloplane 4.0 class Deinococci root:Environmental:Terrestrial:Soil 5.0 -class Deinococci root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +class Deinococci root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 class Deinococci root:Environmental:Aquatic:Sediment 2.0 +class Deinococci root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Deinococci root:Host-associated:Human:Digestive system 1.0 class Deinococci root:Environmental:Aquatic:Thermal springs 3.0 class Deinococci root:Engineered:Solid waste:Composting 8.0 @@ -45908,7 +47040,6 @@ class Deinococci root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 class Deinococci root:Engineered:Food production 1.0 class Deinococci root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 class Deinococci root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class Deinococci root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Deinococci root:Engineered:Food production:Fermented seafood 1.0 class Deinococci root:Environmental:Aquatic:Estuary 2.0 class Deinococci root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 @@ -45934,9 +47065,9 @@ genus Alkalimonas root:Environmental:Terrestrial:Soil 1.0 species Alkalimonas amylolytica root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bacteroides pseudolongum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system 1.0 +species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Bacteroides pseudolongum root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Lactobacillus zeae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus zeae root:Engineered:Food production:Dairy products 11.0 @@ -45947,6 +47078,7 @@ species Bacteroides dorei root:Host-associated:Human:Digestive system:Large inte species Bacteroides dorei root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacteroides dorei root:Host-associated:Human:Digestive system 2.0 species Bacteroides dorei root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +species Bacteroides dorei root:Engineered:Wastewater:Water and sludge 1.0 species Odoribacter splanchnicus root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 species Odoribacter splanchnicus root:Host-associated:Human:Digestive system 1.0 species Odoribacter splanchnicus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -45965,6 +47097,7 @@ species Ectothiorhodospira marina root:Host-associated:Human:Digestive system:La species Fusobacteriaceae bacterium F3 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Fusobacteriaceae bacterium F3 root:Engineered:Food production:Dairy products 1.0 species Fusobacteriaceae bacterium F3 root:Environmental:Aquatic:Marine:Sediment 4.0 +species Fusobacteriaceae bacterium F3 root:Engineered:Food production:Fermented seafood 1.0 species Fusobacteriaceae bacterium F3 root:Host-associated:Fish:Digestive system 1.0 species Fusobacteriaceae bacterium F3 root:Host-associated:Fish:Digestive system:Intestine 1.0 species Fusobacteriaceae bacterium F3 root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -45983,19 +47116,19 @@ genus Pseudonocardia root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Pseudonocardia root:Engineered:Bioreactor 6.0 genus Pseudonocardia root:Environmental:Terrestrial:Soil:Permafrost 1.0 genus Pseudonocardia root:Host-associated:Mammals 1.0 -genus Pseudonocardia root:Host-associated:Plants:Rhizosphere 5.0 +genus Pseudonocardia root:Host-associated:Plants:Rhizosphere 6.0 genus Pseudonocardia root:Environmental:Terrestrial:Soil 4.0 genus Pseudonocardia root:Environmental:Aquatic:Sediment 1.0 +genus Pseudonocardia root:Engineered:Lab enrichment 1.0 genus Pseudonocardia root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Pseudonocardia root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Pseudonocardia root:Environmental:Terrestrial:Soil:Desert 1.0 genus Pseudonocardia root:Engineered:Lab enrichment:Defined media 1.0 genus Pseudonocardia root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Pseudonocardia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Pseudonocardia root:Engineered:Wastewater:Industrial wastewater 2.0 genus Pseudonocardia root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Pseudonocardia root:Environmental:Aquatic:Marine:Oceanic:Benthic 3.0 genus Pseudonocardia root:Environmental:Terrestrial:Soil:Crop 1.0 -genus Pseudonocardia root:Engineered:Lab enrichment 1.0 species Actinomyces massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Leptotrichia buccalis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Leptotrichia buccalis root:Host-associated:Human:Digestive system:Oral 4.0 @@ -46052,27 +47185,27 @@ superkingdom Unassignable root:Environmental:Aquatic:Marine 1.0 superkingdom Unassignable root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 superkingdom Unassignable root:Host-associated 1.0 species Megasphaera sp. DISK 18 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Collinsella tanakaei root:Host-associated:Human:Digestive system:Large intestine:Fecal 2.0 -species Collinsella tanakaei root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Collinsella tanakaei root:Host-associated:Animal:Digestive system 1.0 -species Collinsella tanakaei root:Host-associated:Animal:Digestive system:Fecal 1.0 phylum Candidatus Taylorbacteria root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Firmicutes bacterium CAG:345 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Clostridium sp. 826 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Candidatus Marinimicrobia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine 47.0 -phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Oceanic 6.0 +phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine 48.0 +phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Oceanic 7.0 phylum Candidatus Marinimicrobia root:Host-associated:Mammals:Digestive system 1.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Lentic:Brackish 1.0 -phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Sediment 4.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Coastal 2.0 phylum Candidatus Marinimicrobia root:Host-associated:Human:Respiratory system:Nasopharyngeal 3.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Estuary 1.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 +phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Candidatus Marinimicrobia root:Environmental:Aquatic:Marine:Pelagic 4.0 +phylum Candidatus Marinimicrobia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 phylum Candidatus Marinimicrobia root:Host-associated:Mammals:Respiratory system 1.0 phylum Candidatus Marinimicrobia root:Host-associated:Human:Respiratory system 1.0 +phylum Candidatus Marinimicrobia root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 phylum Candidatus Marinimicrobia root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 phylum Candidatus Marinimicrobia root 1.0 phylum Candidatus Marinimicrobia root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 @@ -46099,13 +47232,13 @@ species Anaerotruncus rubiinfantis root:Host-associated:Animal:Digestive system: species Phyllobacterium myrsinacearum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Phyllobacterium myrsinacearum root:Host-associated:Plants:Phylloplane 1.0 species Ruminococcus sp. 5 1 39BFAA root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species Slackia piriformis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus rhamnosus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus rhamnosus root:Host-associated:Human:Digestive system:Large intestine 1.0 species Lactobacillus rhamnosus root:Host-associated:Human:Digestive system:Oral 2.0 species Lactobacillus rhamnosus root:Host-associated:Human:Digestive system 1.0 species Lactobacillus rhamnosus root:Engineered:Lab Synthesis:Genetic cross 1.0 species Holdemania filiformis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Holdemania filiformis root:Host-associated:Human:Digestive system:Large intestine 1.0 species Shewanella taiwanensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Clostridium butyricum root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Clostridium butyricum root:Engineered:Bioreactor 1.0 @@ -46133,12 +47266,14 @@ species Thiovirga denitrificans root:Engineered:Modeled:Simulated communities (s species Thiovirga denitrificans root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 phylum Thermi root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Thermi root:Environmental:Aquatic:Marine:Oceanic 1.0 -phylum Thermi root:Environmental:Aquatic:Thermal springs 1.0 phylum Thermi root:Host-associated:Plants:Rhizosphere:Soil 1.0 +phylum Thermi root:Environmental:Aquatic:Thermal springs 1.0 phylum Thermi root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 phylum Thermi root:Engineered:Wastewater:Water and sludge 1.0 phylum Thermi root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 phylum Thermi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +species Prevotella buccae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Prevotella buccae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Bacteroides sp. Marseille-P3108 root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Bacteroides sp. Marseille-P3108 root:Environmental:Aquatic:Sediment 1.0 species Bacteroides sp. Marseille-P3108 root:Host-associated:Human:Digestive system 1.0 @@ -46147,14 +47282,16 @@ phylum Porifera root:Environmental:Aquatic:Marine 9.0 phylum Porifera root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Porifera root:Host-associated:Mammals 1.0 phylum Porifera root:Engineered:Food production:Fermented beverages 1.0 +phylum Porifera root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Porifera root:Host-associated:Plants:Phylloplane 1.0 phylum Porifera root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Porifera root:Host-associated:Porifera 3.0 phylum Porifera root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 phylum Porifera root:Environmental:Aquatic:Marine:Coastal 2.0 -phylum Porifera root:Host-associated:Plants:Root 1.0 +phylum Porifera root:Host-associated:Plants:Root 2.0 phylum Porifera root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Porifera root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +phylum Porifera root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Eurotiomycetes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 class Eurotiomycetes root:Environmental:Aquatic:Marine 5.0 class Eurotiomycetes root:Environmental:Terrestrial:Soil:Forest soil 4.0 @@ -46164,26 +47301,28 @@ class Eurotiomycetes root:Host-associated:Human:Skin 3.0 class Eurotiomycetes root:Host-associated:Human:Digestive system:Oral 1.0 class Eurotiomycetes root:Engineered:Food production:Dairy products 1.0 class Eurotiomycetes root:Host-associated:Plants:Rhizosphere 2.0 -class Eurotiomycetes root:Environmental:Terrestrial:Soil 2.0 +class Eurotiomycetes root:Environmental:Terrestrial:Soil 3.0 class Eurotiomycetes root:Environmental:Aquatic:Marine:Sediment 4.0 +class Eurotiomycetes root:Engineered:Lab enrichment 1.0 +class Eurotiomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Eurotiomycetes root:Environmental:Aquatic:Freshwater 1.0 class Eurotiomycetes root:Environmental:Aquatic:Marine:Coastal 1.0 class Eurotiomycetes root:Engineered:Lab enrichment:Defined media 1.0 class Eurotiomycetes root:Host-associated:Plants:Root 2.0 class Eurotiomycetes root:Engineered:Food production 1.0 class Eurotiomycetes root:Environmental:Terrestrial:Deep subsurface 3.0 -class Eurotiomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Eurotiomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Eurotiomycetes root:Environmental:Terrestrial:Soil:Clay 1.0 -class Eurotiomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Eurotiomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Eurotiomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Eurotiomycetes root:Engineered:Built environment 2.0 class Eurotiomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Eurotiomycetes root:Engineered:Food production:Fermented vegetables 1.0 class Eurotiomycetes root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 class Eurotiomycetes root:Environmental:Air 1.0 +class Eurotiomycetes root:Host-associated:Fungi 1.0 class Anthozoa root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -class Anthozoa root:Environmental:Aquatic:Marine 7.0 +class Anthozoa root:Environmental:Aquatic:Marine 8.0 class Anthozoa root:Environmental:Aquatic:Marine:Oceanic 1.0 class Anthozoa root:Environmental:Aquatic:Estuary:Sediment 1.0 class Anthozoa root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -46201,8 +47340,8 @@ class Ulvophyceae root:Environmental:Aquatic:Marine:Coastal 2.0 class Ulvophyceae root:Host-associated:Algae:Red algae 3.0 class Ulvophyceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 class Ulvophyceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -class Ulvophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Ulvophyceae root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +class Ulvophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Ulvophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 class Demospongiae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 class Demospongiae root:Environmental:Aquatic:Marine 4.0 @@ -46213,6 +47352,7 @@ class Demospongiae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef class Demospongiae root:Environmental:Aquatic:Marine:Coastal 1.0 class Demospongiae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Demospongiae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +class Demospongiae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Bacillariophyceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 class Bacillariophyceae root:Environmental:Aquatic:Marine 25.0 class Bacillariophyceae root:Environmental:Aquatic:Marine:Oceanic 6.0 @@ -46227,8 +47367,8 @@ class Bacillariophyceae root:Environmental:Aquatic:Marine:Coastal 4.0 class Bacillariophyceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 class Bacillariophyceae root:Environmental:Aquatic:Estuary 1.0 class Bacillariophyceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -class Bacillariophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Bacillariophyceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Bacillariophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Bacillariophyceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Bacillariophyceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 class Bacillariophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 @@ -46249,8 +47389,8 @@ order Suessiales root:Mixed 1.0 order Suessiales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Suessiales root:Environmental:Aquatic:Marine:Coastal 1.0 order Suessiales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -order Suessiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Suessiales root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +order Suessiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Eurotiales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 order Eurotiales root:Environmental:Aquatic:Marine 4.0 order Eurotiales root:Host-associated:Plants 1.0 @@ -46258,13 +47398,14 @@ order Eurotiales root:Engineered:Food production:Dairy products 1.0 order Eurotiales root:Host-associated:Plants:Rhizosphere 1.0 order Eurotiales root:Environmental:Terrestrial:Soil 1.0 order Eurotiales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Eurotiales root:Engineered:Lab enrichment 1.0 order Eurotiales root:Environmental:Aquatic:Marine:Coastal 1.0 order Eurotiales root:Engineered:Lab enrichment:Defined media 1.0 order Eurotiales root:Engineered:Food production 1.0 order Eurotiales root:Environmental:Terrestrial:Deep subsurface 2.0 order Eurotiales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -order Eurotiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Eurotiales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Eurotiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Eurotiales root:Engineered:Built environment 2.0 order Eurotiales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Eurotiales root:Engineered:Food production:Fermented vegetables 1.0 @@ -46273,8 +47414,8 @@ order Scleractinia root:Host-associated:Human:Digestive system:Large intestine:F order Scleractinia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 order Scleractinia root:Host-associated:Invertebrates:Cnidaria:Coral 9.0 order Cladophorales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -order Cladophorales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Cladophorales root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +order Cladophorales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Malvales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 order Malvales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Malvales root:Host-associated:Plants 11.0 @@ -46285,11 +47426,12 @@ order Malvales root:Host-associated:Insecta:Digestive system 2.0 order Malvales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Malvales root:Host-associated:Insecta 1.0 order Malvales root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 +order Malvales root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Syndiniales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -order Syndiniales root:Environmental:Aquatic:Marine 96.0 -order Syndiniales root:Environmental:Aquatic:Marine:Oceanic 30.0 +order Syndiniales root:Environmental:Aquatic:Marine 99.0 +order Syndiniales root:Environmental:Aquatic:Marine:Oceanic 31.0 order Syndiniales root:Environmental:Aquatic:Lentic:Brackish 1.0 -order Syndiniales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +order Syndiniales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 order Syndiniales root:Environmental:Aquatic:Marine:Sediment 12.0 order Syndiniales root:Environmental:Aquatic 1.0 order Syndiniales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 @@ -46298,8 +47440,8 @@ order Syndiniales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Syndiniales root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 order Syndiniales root:Environmental:Aquatic:Marine:Marginal Sea 3.0 order Syndiniales root:Environmental:Aquatic:Marine:Pelagic 1.0 -order Syndiniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Syndiniales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Syndiniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Syndiniales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Syndiniales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 order Ulvales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -46307,8 +47449,8 @@ order Ulvales root:Environmental:Aquatic:Marine 1.0 order Ulvales root:Environmental:Aquatic:Marine:Coastal 2.0 order Ulvales root:Host-associated:Algae:Red algae 1.0 order Ulvales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -order Ulvales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Ulvales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Ulvales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Gymnodiniales root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 order Gymnodiniales root:Environmental:Aquatic:Marine 45.0 order Gymnodiniales root:Environmental:Aquatic:Marine:Oceanic 15.0 @@ -46319,8 +47461,8 @@ order Gymnodiniales root:Environmental:Aquatic:Marine:Coastal 10.0 order Gymnodiniales root:Environmental:Aquatic:Marine:Neritic zone 1.0 order Gymnodiniales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Gymnodiniales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -order Gymnodiniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Gymnodiniales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Gymnodiniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Symbiodiniaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Symbiodiniaceae root:Environmental:Aquatic:Marine 2.0 family Symbiodiniaceae root:Mixed 2.0 @@ -46332,6 +47474,7 @@ family Aspergillaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1. family Aspergillaceae root:Host-associated:Plants 2.0 family Aspergillaceae root:Environmental:Terrestrial:Soil 1.0 family Aspergillaceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Aspergillaceae root:Engineered:Lab enrichment 1.0 family Aspergillaceae root:Engineered:Lab enrichment:Defined media 1.0 family Aspergillaceae root:Engineered:Food production 1.0 family Aspergillaceae root:Environmental:Terrestrial:Deep subsurface 1.0 @@ -46350,6 +47493,7 @@ family Malvaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Malvaceae root:Host-associated:Insecta 1.0 family Malvaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Malvaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 +family Malvaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Siphonocladaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 family Siphonocladaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Euphorbiaceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -46386,6 +47530,7 @@ genus Phaeophila root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Gyrodinium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Gyrodinium root:Environmental:Aquatic:Marine 35.0 genus Gyrodinium root:Environmental:Aquatic:Marine:Oceanic 12.0 +genus Gyrodinium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Gyrodinium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Gyrodinium root:Environmental:Aquatic 1.0 genus Gyrodinium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -46396,8 +47541,8 @@ genus Gyrodinium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Saccharomyces root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Saccharomyces root:Host-associated:Human 1.0 genus Saccharomyces root:Engineered:Food production:Fermented beverages 1.0 -genus Saccharomyces root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Saccharomyces root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Saccharomyces root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Ostreobium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Ostreobium root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Alvinactis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 @@ -46447,9 +47592,9 @@ species Thiothrix aggregata root:Host-associated:Human:Digestive system:Large in phylum Candidatus Aminicenantes root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 phylum Candidatus Aminicenantes root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 phylum Candidatus Aminicenantes root:Environmental:Aquatic:Marine:Sediment 1.0 +phylum Candidatus Aminicenantes root:Engineered:Lab enrichment 1.0 phylum Candidatus Aminicenantes root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 phylum Candidatus Aminicenantes root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -phylum Candidatus Aminicenantes root:Engineered:Lab enrichment 1.0 species Cetobacterium somerae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Cetobacterium somerae root:Environmental:Aquatic:Marine 1.0 species Cetobacterium somerae root:Host-associated:Mammals:Digestive system 1.0 @@ -46471,10 +47616,9 @@ species Erysipelotrichaceae bacterium 6 1 45 root:Host-associated:Human:Digestiv species Erysipelotrichaceae bacterium 6 1 45 root:Host-associated:Mammals:Digestive system 1.0 species Erysipelotrichaceae bacterium 6 1 45 root:Host-associated:Human 1.0 species Erysipelotrichaceae bacterium 6 1 45 root:Host-associated:Human:Digestive system 1.0 -species [Clostridium] scindens root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -species [Clostridium] scindens root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 species Traorella massiliensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Streptococcus anginosus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 +species Streptococcus anginosus root:Host-associated:Human 1.0 species Streptococcus anginosus root:Host-associated:Human:Skin 1.0 species Streptococcus anginosus root:Host-associated:Human:Reproductive system:Vagina 1.0 species Streptococcus anginosus root:Host-associated:Human:Digestive system:Oral 13.0 @@ -46545,11 +47689,11 @@ species Bacillus kestanbolensis root:Host-associated:Plants:Rhizosphere 3.0 species Bacillus kestanbolensis root:Environmental:Terrestrial:Soil 23.0 species Bacillus kestanbolensis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Bacillus kestanbolensis root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Bacillus kestanbolensis root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Bacillus kestanbolensis root:Host-associated:Human:Digestive system 1.0 species Bacillus kestanbolensis root:Environmental:Terrestrial:Soil:Desert 3.0 species Bacillus kestanbolensis root:Host-associated:Plants:Root 1.0 species Bacillus kestanbolensis root:Engineered:Food production 1.0 -species Bacillus kestanbolensis root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Bacillus kestanbolensis root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species Bacillus kestanbolensis root:Engineered:Wastewater:Industrial wastewater 1.0 species Bacillus kestanbolensis root:Engineered:Modeled 1.0 @@ -46566,7 +47710,6 @@ species [Eubacterium] biforme root:Host-associated:Human:Digestive system:Large species [Eubacterium] biforme root:Environmental:Terrestrial:Soil 1.0 species [Eubacterium] biforme root:Environmental:Terrestrial:Soil:Grasslands 1.0 species [Eubacterium] biforme root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Paraprevotella xylaniphila root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Hafnia root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Hafnia root:Host-associated:Plants 1.0 genus Hafnia root:Engineered:Food production:Fermented beverages 1.0 @@ -46650,11 +47793,11 @@ species Butyricimonas indistinctus root:Host-associated:Human:Digestive system:L genus Lutibacterium root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 genus Lutibacterium root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Lutibacterium root:Environmental:Terrestrial:Soil:Contaminated 1.0 +genus Lutibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Lutibacterium root:Environmental:Aquatic:Freshwater 1.0 genus Lutibacterium root:Engineered:Solid waste:Composting 1.0 genus Lutibacterium root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Lutibacterium root:Environmental:Terrestrial:Soil:Desert 2.0 -genus Lutibacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Lutibacterium root:Host-associated:Insecta:Digestive system 1.0 genus Lutibacterium root:Host-associated 1.0 genus Lutibacterium root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -46674,16 +47817,16 @@ species Ruminococcus bromii root:Host-associated:Mammals:Digestive system:Stomac species Ruminococcus bromii root:Host-associated:Human:Digestive system 1.0 species Alishewanella rectus root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 class [Brachyspirae] root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -class [Brachyspirae] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 class [Brachyspirae] root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +class [Brachyspirae] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 class [Brachyspirae] root:Engineered:Bioreactor:Continuous culture 1.0 order [Brachyspirales] root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -order [Brachyspirales] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 order [Brachyspirales] root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +order [Brachyspirales] root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 order [Brachyspirales] root:Engineered:Bioreactor:Continuous culture 1.0 family Brachyspiraceae root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 -family Brachyspiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Brachyspiraceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +family Brachyspiraceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Brachyspiraceae root:Engineered:Bioreactor:Continuous culture 1.0 species Shewanella homiensis root:Host-associated:Human:Digestive system:Large intestine:Fecal 1.0 species Shewanella homiensis root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -46701,6 +47844,7 @@ phylum Chaetognatha root:Host-associated:Microbial:Bacteria 1.0 class Bivalvia root:Environmental:Aquatic:Marine 9.0 class Bivalvia root:Environmental:Aquatic:Estuary:Sediment 2.0 class Bivalvia root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +class Bivalvia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Bivalvia root:Environmental:Aquatic:Marine:Sediment 3.0 class Bivalvia root:Environmental:Aquatic:Freshwater:Lotic 1.0 class Bivalvia root:Environmental:Aquatic:Marine:Coastal 4.0 @@ -46722,13 +47866,14 @@ class Agaricomycetes root:Engineered:Bioreactor 3.0 class Agaricomycetes root:Host-associated:Mammals 1.0 class Agaricomycetes root:Engineered:Food production:Fermented beverages 1.0 class Agaricomycetes root:Host-associated:Plants:Rhizosphere 1.0 -class Agaricomycetes root:Environmental:Terrestrial:Soil 5.0 +class Agaricomycetes root:Environmental:Terrestrial:Soil 6.0 class Agaricomycetes root:Environmental:Aquatic:Marine:Sediment 3.0 +class Agaricomycetes root:Engineered:Lab enrichment 1.0 +class Agaricomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Agaricomycetes root:Engineered:Solid waste:Composting 1.0 -class Agaricomycetes root:Host-associated:Plants:Root 2.0 +class Agaricomycetes root:Host-associated:Plants:Root 3.0 class Agaricomycetes root:Environmental:Terrestrial:Deep subsurface 1.0 class Agaricomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -class Agaricomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Agaricomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Agaricomycetes root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Agaricomycetes root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -46739,6 +47884,8 @@ class Agaricomycetes root:Engineered:Built environment 1.0 class Agaricomycetes root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 class Agaricomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Agaricomycetes root:Environmental:Air 1.0 +class Agaricomycetes root:Host-associated:Fungi 1.0 +class Agaricomycetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Agaricomycetes root:Host-associated:Human:Circulatory system 2.0 class Agaricomycetes root:Environmental:Terrestrial:Soil:Loam 1.0 order Aphragmophora root:Environmental:Aquatic:Marine 6.0 @@ -46752,8 +47899,8 @@ order Veneroida root:Environmental:Aquatic:Marine:Coastal 1.0 order Veneroida root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Veneroida root:Host-associated:Mollusca 1.0 order Veneroida root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -order Prorocentrales root:Environmental:Aquatic:Marine 5.0 -order Prorocentrales root:Environmental:Aquatic:Marine:Oceanic 2.0 +order Prorocentrales root:Environmental:Aquatic:Marine 6.0 +order Prorocentrales root:Environmental:Aquatic:Marine:Oceanic 3.0 order Prorocentrales root:Environmental:Aquatic:Lentic:Brackish 1.0 order Prorocentrales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 order Prorocentrales root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -46779,7 +47926,7 @@ family Sagittidae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1 family Sagittidae root:Environmental:Aquatic:Marine:Coastal 1.0 family Sagittidae root:Host-associated:Microbial:Bacteria 1.0 family Prorocentraceae root:Environmental:Aquatic:Marine 8.0 -family Prorocentraceae root:Environmental:Aquatic:Marine:Oceanic 4.0 +family Prorocentraceae root:Environmental:Aquatic:Marine:Oceanic 5.0 family Prorocentraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Prorocentraceae root:Environmental:Aquatic:Marine:Coastal 3.0 family Prorocentraceae root:Environmental:Aquatic:Estuary 2.0 @@ -46792,7 +47939,7 @@ family Bacillariaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary family Bacillariaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Bacillariaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family Oikopleuridae root:Environmental:Aquatic:Marine 18.0 -family Oikopleuridae root:Environmental:Aquatic:Marine:Oceanic 7.0 +family Oikopleuridae root:Environmental:Aquatic:Marine:Oceanic 8.0 family Oikopleuridae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Oikopleuridae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Oikopleuridae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -46802,7 +47949,7 @@ family Oikopleuridae root:Host-associated:Arthropoda 1.0 genus Skeletonema root:Environmental:Aquatic:Marine 15.0 genus Skeletonema root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Skeletonema root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Skeletonema root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Skeletonema root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Skeletonema root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Skeletonema root:Environmental:Aquatic:Marine:Sediment 3.0 genus Skeletonema root:Environmental:Aquatic 3.0 @@ -46812,12 +47959,13 @@ genus Skeletonema root:Engineered:Solid waste:Composting 1.0 genus Skeletonema root:Environmental:Aquatic:Estuary 4.0 genus Skeletonema root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Sagitta root:Environmental:Aquatic:Marine 7.0 +genus Sagitta root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Sagitta root:Environmental:Aquatic:Marine:Coastal 1.0 genus Sagitta root:Host-associated:Microbial:Bacteria 1.0 genus Fragilariopsis root:Environmental:Aquatic:Marine 3.0 genus Fragilariopsis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Oikopleura root:Environmental:Aquatic:Marine 11.0 -genus Oikopleura root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Oikopleura root:Environmental:Aquatic:Marine:Oceanic 5.0 genus Oikopleura root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Oikopleura root:Environmental:Aquatic:Estuary 2.0 genus Oikopleura root:Environmental:Aquatic:Marine:Pelagic 2.0 @@ -46829,11 +47977,11 @@ genus Gymnodinium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Gymnodinium root:Environmental:Aquatic:Marine:Coastal 2.0 genus Pleurobrachia root:Environmental:Aquatic:Marine 1.0 genus Pleurobrachia root:Host-associated:Microbial:Bacteria 1.0 -genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine 28.0 +genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine 30.0 genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Oceanic 18.0 genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Lentic:Brackish 1.0 -genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Sediment 11.0 genus Candidatus Nitrosopelagicus root:Host-associated:Porifera 5.0 genus Candidatus Nitrosopelagicus root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -46853,16 +48001,17 @@ genus Calanus root:Environmental:Aquatic:Estuary 2.0 genus Calanus root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus Calanus root:Host-associated:Microbial:Bacteria 1.0 species Sagitta elegans root:Environmental:Aquatic:Marine 9.0 +species Sagitta elegans root:Environmental:Aquatic:Marine:Oceanic 2.0 species Sagitta elegans root:Environmental:Aquatic:Marine:Coastal 1.0 species Sagitta elegans root:Host-associated:Microbial:Bacteria 1.0 species Fragilariopsis cylindrus root:Environmental:Aquatic:Marine 5.0 -species Fragilariopsis cylindrus root:Environmental:Aquatic:Marine:Oceanic 3.0 +species Fragilariopsis cylindrus root:Environmental:Aquatic:Marine:Oceanic 5.0 species Fragilariopsis cylindrus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Fragilariopsis cylindrus root:Environmental:Aquatic:Marine:Coastal 1.0 species Fragilariopsis cylindrus root:Environmental:Aquatic:Estuary 3.0 species Oikopleura dioica root:Environmental:Aquatic:Marine 9.0 -species Oikopleura dioica root:Environmental:Aquatic:Marine:Oceanic 3.0 -species Oikopleura dioica root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +species Oikopleura dioica root:Environmental:Aquatic:Marine:Oceanic 5.0 +species Oikopleura dioica root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species Oikopleura dioica root:Environmental:Aquatic:Marine:Coastal 1.0 species Oikopleura dioica root:Environmental:Aquatic:Marine:Neritic zone 1.0 species Oikopleura dioica root:Environmental:Aquatic:Estuary 2.0 @@ -46872,7 +48021,7 @@ species Pleurobrachia bachei root:Environmental:Aquatic:Marine 1.0 species Pleurobrachia bachei root:Host-associated:Microbial:Bacteria 1.0 species planktonic euryarchaeote root:Environmental:Aquatic:Marine 1.0 species planktonic euryarchaeote root:Environmental:Aquatic:Estuary 1.0 -species Marine group II euryarchaeote REDSEA-S03 B6 root:Environmental:Aquatic:Marine 25.0 +species Marine group II euryarchaeote REDSEA-S03 B6 root:Environmental:Aquatic:Marine 27.0 species Marine group II euryarchaeote REDSEA-S03 B6 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Marine group II euryarchaeote REDSEA-S03 B6 root:Environmental:Aquatic:Marine:Oceanic 14.0 species Marine group II euryarchaeote REDSEA-S03 B6 root:Mixed 1.0 @@ -46907,10 +48056,10 @@ phylum Candidatus Falkowbacteria root:Engineered:Wastewater:Activated Sludge 1.0 phylum Candidatus Falkowbacteria root:Environmental:Aquatic:Marine:Coastal 1.0 phylum Candidatus Falkowbacteria root:Engineered:Solid waste:Landfill 1.0 phylum Candidatus Falkowbacteria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -class Nitrospinia root:Environmental:Aquatic:Marine 72.0 +class Nitrospinia root:Environmental:Aquatic:Marine 73.0 class Nitrospinia root:Environmental:Aquatic:Marine:Oceanic 12.0 class Nitrospinia root:Environmental:Aquatic:Lentic:Brackish 2.0 -class Nitrospinia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +class Nitrospinia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 class Nitrospinia root:Environmental:Aquatic:Marine:Sediment 6.0 class Nitrospinia root:Host-associated:Porifera 2.0 class Nitrospinia root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -46923,14 +48072,15 @@ class Nitrospinia root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 class Nitrospinia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 class Nitrospinia root:Environmental:Aquatic:Marine:Marginal Sea 3.0 class Nitrospinia root:Environmental:Aquatic:Marine:Pelagic 1.0 +class Nitrospinia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 class Nitrospinia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 class Nitrospinia root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 class Nitrospinia root:Host-associated:Cnidaria 1.0 class Nitrospinia root 1.0 -order Nitrospinales root:Environmental:Aquatic:Marine 48.0 +order Nitrospinales root:Environmental:Aquatic:Marine 49.0 order Nitrospinales root:Environmental:Aquatic:Marine:Oceanic 14.0 order Nitrospinales root:Environmental:Aquatic:Lentic:Brackish 1.0 -order Nitrospinales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +order Nitrospinales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 order Nitrospinales root:Environmental:Aquatic:Marine:Sediment 4.0 order Nitrospinales root:Host-associated:Porifera 1.0 order Nitrospinales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -46940,14 +48090,15 @@ order Nitrospinales root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 order Nitrospinales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 order Nitrospinales root:Environmental:Aquatic:Marine:Marginal Sea 2.0 order Nitrospinales root:Environmental:Aquatic:Marine:Pelagic 2.0 +order Nitrospinales root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Nitrospinales root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 order Nitrospinales root 1.0 -family Nitrospinaceae root:Environmental:Aquatic:Marine 61.0 +family Nitrospinaceae root:Environmental:Aquatic:Marine 62.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Oceanic 20.0 family Nitrospinaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Nitrospinaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 -family Nitrospinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 +family Nitrospinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Sediment 6.0 family Nitrospinaceae root:Host-associated:Porifera 2.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -46957,6 +48108,7 @@ family Nitrospinaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2. family Nitrospinaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Pelagic 2.0 +family Nitrospinaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 family Nitrospinaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 family Nitrospinaceae root:Host-associated:Cnidaria 1.0 @@ -46997,9 +48149,10 @@ species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Environmental species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Engineered:Food production:Fermented beverages 1.0 species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Engineered:Wastewater:Industrial wastewater 1.0 +species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Candidatus Nomurabacteria bacterium GW2011 GWE1 32 28 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Parcubacteria bacterium C7867-006 root:Environmental:Aquatic:Marine 1.0 -species uncultured marine eukaryote root:Environmental:Aquatic:Marine 78.0 +species uncultured marine eukaryote root:Environmental:Aquatic:Marine 79.0 species uncultured marine eukaryote root:Host-associated:Fish 1.0 species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Oceanic 32.0 @@ -47025,8 +48178,8 @@ species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Brackish 1 species uncultured marine eukaryote root:Host-associated:Fish:Digestive system:Foregut 1.0 species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Marginal Sea 3.0 species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Pelagic 3.0 -species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species uncultured marine eukaryote root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species uncultured marine eukaryote root:Host-associated:Fish:Digestive system:Intestine 2.0 species uncultured marine eukaryote root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species uncultured marine eukaryote root:Host-associated:Algae 1.0 @@ -47034,7 +48187,7 @@ species uncultured marine eukaryote root:Environmental:Aquatic:Aquaculture 2.0 species uncultured marine eukaryote root:Host-associated:Fish:Skin 2.0 species uncultured marine eukaryote root:Host-associated:Arthropoda 1.0 species uncultured marine eukaryote root:Host-associated:Algae:Brown Algae 2.0 -class Polycystinea root:Environmental:Aquatic:Marine 69.0 +class Polycystinea root:Environmental:Aquatic:Marine 72.0 class Polycystinea root:Environmental:Aquatic:Marine:Oceanic 17.0 class Polycystinea root:Environmental:Aquatic:Lentic:Brackish 1.0 class Polycystinea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -47054,24 +48207,27 @@ family Parachlamydiaceae root:Environmental:Aquatic:Marine 1.0 family Parachlamydiaceae root:Environmental:Terrestrial:Soil 1.0 family Parachlamydiaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Parachlamydiaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 -genus Alteromonas root:Environmental:Aquatic:Marine 84.0 +genus Alteromonas root:Environmental:Aquatic:Marine 97.0 genus Alteromonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Alteromonas root:Environmental:Aquatic:Marine:Oceanic 14.0 +genus Alteromonas root:Environmental:Aquatic:Marine:Oceanic 15.0 genus Alteromonas root:Environmental:Aquatic:Lentic:Brackish 2.0 genus Alteromonas root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Alteromonas root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Alteromonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 4.0 genus Alteromonas root:Environmental:Aquatic:Marine:Coastal 4.0 genus Alteromonas root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Alteromonas root:Host-associated:Mollusca 1.0 genus Alteromonas root:Environmental:Aquatic:Marine:Brackish 7.0 genus Alteromonas root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 +genus Alteromonas root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Alteromonas root:Environmental:Aquatic:Marine:Pelagic 1.0 -genus Alteromonas root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Alteromonas root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Alteromonas root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Alteromonas root:Environmental:Aquatic:Aquaculture 1.0 genus Alteromonas root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 genus Alteromonas root 1.0 -genus Erythrobacter root:Environmental:Aquatic:Marine 39.0 +genus Erythrobacter root:Environmental:Aquatic:Marine 48.0 +genus Erythrobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Erythrobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Erythrobacter root:Host-associated:Plants:Phylloplane 1.0 genus Erythrobacter root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -47080,7 +48236,7 @@ genus Erythrobacter root:Environmental:Aquatic:Marine:Brackish 1.0 genus Erythrobacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 genus Erythrobacter root:Environmental:Aquatic:Aquaculture 1.0 genus Erythrobacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 -genus Psychrobacter root:Environmental:Aquatic:Marine 24.0 +genus Psychrobacter root:Environmental:Aquatic:Marine 30.0 genus Psychrobacter root:Host-associated:Fish 4.0 genus Psychrobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Psychrobacter root:Environmental:Aquatic:Marine:Oceanic 5.0 @@ -47092,6 +48248,7 @@ genus Psychrobacter root:Engineered:Wastewater:Activated Sludge 1.0 genus Psychrobacter root:Host-associated:Human:Skin 1.0 genus Psychrobacter root:Mixed 1.0 genus Psychrobacter root:Host-associated:Mammals 3.0 +genus Psychrobacter root:Host-associated:Human:Digestive system:Intestine 1.0 genus Psychrobacter root:Engineered:Wastewater 1.0 genus Psychrobacter root:Engineered:Food production:Dairy products 3.0 genus Psychrobacter root:Host-associated:Plants:Phylloplane 2.0 @@ -47102,16 +48259,17 @@ genus Psychrobacter root:Environmental:Aquatic:Sediment 2.0 genus Psychrobacter root:Environmental:Aquatic 2.0 genus Psychrobacter root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Psychrobacter root:Host-associated:Porifera 1.0 +genus Psychrobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Psychrobacter root:Environmental:Aquatic:Marine:Coastal 2.0 genus Psychrobacter root:Engineered:Solid waste:Composting 3.0 genus Psychrobacter root:Host-associated:Algae:Red algae 2.0 genus Psychrobacter root:Environmental:Aquatic:Marine:Oil-contaminated sediment 2.0 genus Psychrobacter root:Engineered:Food production 3.0 genus Psychrobacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Psychrobacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Psychrobacter root:Host-associated:Human:Respiratory system:Nasopharyngeal 1.0 genus Psychrobacter root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Psychrobacter root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +genus Psychrobacter root:Host-associated:Fish:Digestive system 1.0 genus Psychrobacter root:Environmental:Terrestrial:Soil:Sand 1.0 genus Psychrobacter root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Psychrobacter root:Engineered:Bioreactor:Continuous culture 1.0 @@ -47123,7 +48281,7 @@ genus Psychrobacter root:Engineered:Wastewater:Water and sludge 1.0 genus Psychrobacter root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 genus Psychrobacter root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 genus Psychrobacter root:Environmental:Aquatic:Freshwater:Ice 2.0 -genus Psychrobacter root:Host-associated:Insecta 1.0 +genus Psychrobacter root:Host-associated:Insecta 2.0 genus Psychrobacter root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Psychrobacter root:Engineered:Built environment 1.0 genus Psychrobacter root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -47140,7 +48298,7 @@ genus Psychrobacter root:Host-associated:Human:Respiratory system:Pulmonary syst species Nocardioides sp. REDSEA-S30 B4 root:Environmental:Aquatic:Marine 36.0 species Nocardioides sp. REDSEA-S30 B4 root:Environmental:Aquatic:Lentic:Brackish 1.0 species Apolemia sp. PC-2008 root:Environmental:Aquatic:Marine 3.0 -species Nitrospina sp. LS NOB root:Environmental:Aquatic:Marine 26.0 +species Nitrospina sp. LS NOB root:Environmental:Aquatic:Marine 27.0 species Nitrospina sp. LS NOB root:Environmental:Aquatic:Marine:Oceanic 1.0 species Nitrospina sp. LS NOB root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Nitrospina sp. LS NOB root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 @@ -47150,7 +48308,7 @@ species Puniceibacterium sp. IMCC21224 root:Host-associated:Plants:Phylloplane 1 species Rhodococcus sp. CUA-806 root:Environmental:Aquatic:Marine 23.0 species Rhodococcus sp. CUA-806 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Rhodococcus sp. Leaf278 root:Environmental:Aquatic:Marine 13.0 -species SAR202 cluster bacterium SCGC AAA240-N13 root:Environmental:Aquatic:Marine 33.0 +species SAR202 cluster bacterium SCGC AAA240-N13 root:Environmental:Aquatic:Marine 34.0 species SAR202 cluster bacterium SCGC AAA240-N13 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species SAR202 cluster bacterium SCGC AAA240-N13 root:Environmental:Aquatic:Marine:Oceanic 10.0 species SAR202 cluster bacterium SCGC AAA240-N13 root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -47166,7 +48324,7 @@ species Staphylococcus lugdunensis root:Host-associated:Algae:Red algae 1.0 species Staphylococcus lugdunensis root:Engineered:Food production 1.0 species Staphylococcus lugdunensis root:Host-associated:Human:Skin:Naris 1.0 species Staphylococcus lugdunensis root:Engineered:Built environment 2.0 -family Collozoidae root:Environmental:Aquatic:Marine 17.0 +family Collozoidae root:Environmental:Aquatic:Marine 19.0 family Collozoidae root:Environmental:Aquatic:Marine:Oceanic 6.0 family Collozoidae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Collozoidae root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -47176,10 +48334,10 @@ family Collozoidae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 family Collozoidae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 family Collozoidae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Collozoidae root 1.0 -genus Candidatus Thioglobus root:Environmental:Aquatic:Marine 41.0 +genus Candidatus Thioglobus root:Environmental:Aquatic:Marine 42.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Oceanic 8.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Lentic:Brackish 1.0 -genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 18.0 +genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 19.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Sediment 5.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -47190,10 +48348,11 @@ genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Brackish 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Pelagic 2.0 +genus Candidatus Thioglobus root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 genus Candidatus Thioglobus root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 -genus Cladococcus root:Environmental:Aquatic:Marine 26.0 +genus Cladococcus root:Environmental:Aquatic:Marine 28.0 genus Cladococcus root:Environmental:Aquatic:Marine:Oceanic 8.0 genus Cladococcus root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Cladococcus root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -47203,7 +48362,7 @@ genus Cladococcus root:Environmental:Aquatic:Marine:Marginal Sea 2.0 genus Cladococcus root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Cladococcus root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 genus Cladococcus root 1.0 -genus Sulfitobacter root:Environmental:Aquatic:Marine 43.0 +genus Sulfitobacter root:Environmental:Aquatic:Marine 46.0 genus Sulfitobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Sulfitobacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Sulfitobacter root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -47211,12 +48370,13 @@ genus Sulfitobacter root:Environmental:Aquatic 1.0 genus Sulfitobacter root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Sulfitobacter root:Environmental:Aquatic:Marine:Coastal 2.0 genus Sulfitobacter root:Host-associated:Fish:Skin 1.0 -genus Alcanivorax root:Environmental:Aquatic:Marine 53.0 +genus Alcanivorax root:Environmental:Aquatic:Marine 68.0 genus Alcanivorax root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Alcanivorax root:Environmental:Aquatic:Marine:Oceanic 11.0 +genus Alcanivorax root:Environmental:Aquatic:Marine:Oceanic 12.0 genus Alcanivorax root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Alcanivorax root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Alcanivorax root:Engineered:Bioreactor 1.0 +genus Alcanivorax root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 genus Alcanivorax root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Alcanivorax root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Alcanivorax root:Environmental:Terrestrial:Soil 5.0 @@ -47240,8 +48400,8 @@ genus Alcanivorax root:Host-associated:Birds:Respiratory system 1.0 genus Alcanivorax root:Host-associated:Cnidaria 1.0 genus Alcanivorax root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 genus Alcanivorax root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 -genus Diplonema root:Environmental:Aquatic:Marine 17.0 -genus Diplonema root:Environmental:Aquatic:Marine:Oceanic 4.0 +genus Diplonema root:Environmental:Aquatic:Marine 18.0 +genus Diplonema root:Environmental:Aquatic:Marine:Oceanic 5.0 genus Diplonema root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Diplonema root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus Diplonema root:Environmental:Aquatic:Marine:Pelagic 1.0 @@ -47253,7 +48413,7 @@ species Cladococcus viminalis root:Environmental:Aquatic:Lentic:Brackish 1.0 species Cladococcus viminalis root:Environmental:Aquatic:Marine:Sediment 3.0 species Cladococcus viminalis root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Cladococcus viminalis root 1.0 -species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine 37.0 +species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine 38.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine:Oceanic 5.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine:Sediment 3.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -47261,7 +48421,7 @@ species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:M species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine:Pelagic 2.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A7 root 1.0 -species Alteromonas macleodii root:Environmental:Aquatic:Marine 25.0 +species Alteromonas macleodii root:Environmental:Aquatic:Marine 26.0 species Alteromonas macleodii root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Alteromonas macleodii root:Environmental:Aquatic:Marine:Oceanic 8.0 species Alteromonas macleodii root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -47274,9 +48434,9 @@ species Alteromonas macleodii root:Environmental:Aquatic:Marine:Marginal Sea 2.0 species Alteromonas macleodii root:Environmental:Aquatic:Marine:Pelagic 2.0 species Alteromonas macleodii root:Host-associated:Insecta 1.0 species Alteromonas macleodii root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -species Alteromonas mediterranea root:Environmental:Aquatic:Marine 5.0 +species Alteromonas mediterranea root:Environmental:Aquatic:Marine 6.0 species SAR324 cluster bacterium SCGC AAA240-J09 root:Environmental:Aquatic:Marine 2.0 -order Candidatus Actinomarinales root:Environmental:Aquatic:Marine 67.0 +order Candidatus Actinomarinales root:Environmental:Aquatic:Marine 68.0 order Candidatus Actinomarinales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Candidatus Actinomarinales root:Environmental:Aquatic:Marine:Oceanic 25.0 order Candidatus Actinomarinales root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -47304,16 +48464,17 @@ family Marinifilaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Marinifilaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Marinifilaceae root:Environmental:Terrestrial:Soil 1.0 family Marinifilaceae root:Environmental:Aquatic:Marine:Sediment 4.0 +family Marinifilaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Marinifilaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Marinifilaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 -family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine 90.0 +family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine 92.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Oceanic 33.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Candidatus Actinomarinaceae root:Host-associated:Plants 1.0 family Candidatus Actinomarinaceae root:Mixed 3.0 -family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 15.0 +family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 16.0 family Candidatus Actinomarinaceae root:Environmental:Terrestrial:Soil 1.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Candidatus Actinomarinaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -47328,6 +48489,7 @@ family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Oceanic:Oil family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Marginal Sea 3.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Pelagic 4.0 +family Candidatus Actinomarinaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Candidatus Actinomarinaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 family Candidatus Actinomarinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Candidatus Actinomarinaceae root:Host-associated:Algae:Brown Algae 1.0 @@ -47337,15 +48499,15 @@ family Mesodiniidae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Mesodiniidae root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Mesodiniidae root:Environmental:Aquatic 1.0 family Mesodiniidae root:Environmental:Aquatic:Estuary 3.0 -genus Candidatus Actinomarina root:Environmental:Aquatic:Marine 114.0 +genus Candidatus Actinomarina root:Environmental:Aquatic:Marine 116.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Oceanic 40.0 +genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Oceanic 41.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Candidatus Actinomarina root:Host-associated:Plants 1.0 genus Candidatus Actinomarina root:Engineered:Bioreactor 1.0 genus Candidatus Actinomarina root:Mixed 4.0 -genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 24.0 +genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 26.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Candidatus Actinomarina root:Environmental:Terrestrial:Soil 1.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -47362,8 +48524,9 @@ genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Oceanic:Oil-cont genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Oceanic:Photic zone 2.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Marginal Sea 3.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Pelagic 8.0 -genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 +genus Candidatus Actinomarina root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Candidatus Actinomarina root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 genus Candidatus Actinomarina root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Candidatus Actinomarina root:Engineered 1.0 genus Candidatus Actinomarina root:Host-associated:Algae:Brown Algae 1.0 @@ -47375,6 +48538,7 @@ genus Marinifilum root:Environmental:Terrestrial:Soil 1.0 genus Marinifilum root:Environmental:Aquatic:Marine:Sediment 3.0 genus Marinifilum root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 genus Marinifilum root:Environmental:Aquatic:Estuary 2.0 +genus Marinifilum root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Marinifilum root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Marinifilum root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Phaeocystis root:Environmental:Aquatic:Marine 29.0 @@ -47415,29 +48579,33 @@ species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine 18. species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Oceanic 6.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Lentic:Brackish 1.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Estuary:Sediment 1.0 -species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 20.0 +species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 21.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Sediment 1.0 species Flavobacterium sp. SCGC AAA160-P02 root:Host-associated:Porifera 1.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Coastal 2.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Estuary 9.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 +species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Flavobacterium sp. SCGC AAA160-P02 root:Environmental:Aquatic:Marine:Pelagic 2.0 species Methylophilales bacterium BACL14 MAG-120920-bin58 root:Environmental:Aquatic:Marine 3.0 species Methylophilales bacterium BACL14 MAG-120920-bin58 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Methylophilales bacterium BACL14 MAG-120920-bin58 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Methylophilales bacterium BACL14 MAG-120920-bin58 root:Environmental:Aquatic:Estuary 1.0 +species Methylophilales bacterium BACL14 MAG-120920-bin58 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine 16.0 -species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Oceanic 4.0 -species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Oceanic 5.0 +species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Coastal 2.0 species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Estuary 1.0 +species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species alpha proteobacterium SCGC AAA160-J14 root:Environmental:Aquatic:Marine:Pelagic 4.0 +species alpha proteobacterium SCGC AAA160-J14 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Ostreococcus tauri root:Environmental:Aquatic:Marine 5.0 species Ostreococcus tauri root:Environmental:Aquatic 1.0 species Ostreococcus tauri root:Environmental:Aquatic:Marine:Coastal 1.0 species Ostreococcus tauri root:Host-associated:Fish:Skin 1.0 -species Phaeocystis antarctica root:Environmental:Aquatic:Marine 18.0 -species Phaeocystis antarctica root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Phaeocystis antarctica root:Environmental:Aquatic:Marine 19.0 +species Phaeocystis antarctica root:Environmental:Aquatic:Marine:Oceanic 2.0 species Phaeocystis antarctica root:Environmental:Aquatic:Marine:Coastal 2.0 species Phaeocystis antarctica root:Environmental:Aquatic:Estuary 2.0 species Sulculeolaria quadrivalvis root:Environmental:Aquatic:Marine 1.0 @@ -47453,12 +48621,13 @@ family Spongiibacteraceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Spongiibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Spongiibacteraceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Spongiibacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -family Alcanivoracaceae root:Environmental:Aquatic:Marine 39.0 -family Alcanivoracaceae root:Environmental:Aquatic:Marine:Oceanic 9.0 +family Alcanivoracaceae root:Environmental:Aquatic:Marine 54.0 +family Alcanivoracaceae root:Environmental:Aquatic:Marine:Oceanic 10.0 family Alcanivoracaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Alcanivoracaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Alcanivoracaceae root:Host-associated:Plants 1.0 family Alcanivoracaceae root:Engineered:Bioreactor 1.0 +family Alcanivoracaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 family Alcanivoracaceae root:Environmental:Terrestrial:Soil 4.0 family Alcanivoracaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Alcanivoracaceae root:Environmental:Terrestrial:Soil:Wetlands 1.0 @@ -47481,15 +48650,16 @@ family Flammeovirgaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) family Flammeovirgaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Flammeovirgaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Flammeovirgaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -family Flammeovirgaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Flammeovirgaceae root:Host-associated 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Flammeovirgaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Flammeovirgaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +family Flammeovirgaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Flammeovirgaceae root:Environmental 2.0 family Flammeovirgaceae root:Host-associated:Arthropoda 1.0 family Flammeovirgaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -47503,12 +48673,12 @@ genus Thecamonas root:Environmental:Aquatic:Marine 2.0 genus Thecamonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Thecamonas trahens root:Environmental:Aquatic:Marine 2.0 species Thecamonas trahens root:Environmental:Aquatic:Marine:Brackish 1.0 -species Roseivirga spongicola root:Environmental:Aquatic:Marine 4.0 +species Roseivirga spongicola root:Environmental:Aquatic:Marine 5.0 species Roseivirga spongicola root:Environmental:Aquatic:Marine:Brackish 2.0 -species Croceibacter atlanticus root:Environmental:Aquatic:Marine 19.0 +species Croceibacter atlanticus root:Environmental:Aquatic:Marine 20.0 species Croceibacter atlanticus root:Environmental:Aquatic:Marine:Oceanic 1.0 species Croceibacter atlanticus root:Environmental:Aquatic:Lentic:Brackish 1.0 -species Marinimicrobia bacterium SCGC AAA003-E22 root:Environmental:Aquatic:Marine 34.0 +species Marinimicrobia bacterium SCGC AAA003-E22 root:Environmental:Aquatic:Marine 35.0 species Marinimicrobia bacterium SCGC AAA003-E22 root:Environmental:Aquatic:Marine:Oceanic 8.0 species Marinimicrobia bacterium SCGC AAA003-E22 root:Environmental:Aquatic:Marine:Sediment 2.0 species Marinimicrobia bacterium SCGC AAA003-E22 root:Environmental:Aquatic:Marine:Pelagic 1.0 @@ -47517,7 +48687,7 @@ species Marinimicrobia bacterium SCGC AAA003-E22 root 1.0 species Alteromonas confluentis root:Environmental:Aquatic:Marine 11.0 species Halomonas axialensis root:Environmental:Aquatic:Marine 21.0 species Marinovum algicola root:Environmental:Aquatic:Marine 18.0 -class Chrysophyceae root:Environmental:Aquatic:Marine 45.0 +class Chrysophyceae root:Environmental:Aquatic:Marine 46.0 class Chrysophyceae root:Environmental:Aquatic:Marine:Oceanic 6.0 class Chrysophyceae root:Mixed 1.0 class Chrysophyceae root:Environmental:Terrestrial:Soil 1.0 @@ -47528,6 +48698,7 @@ class Chrysophyceae root:Environmental:Aquatic:Marine:Coastal 3.0 class Chrysophyceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 class Chrysophyceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 class Chrysophyceae root:Engineered:Wastewater:Water and sludge 1.0 +class Chrysophyceae root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Chrysophyceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Chrysophyceae root:Engineered:Bioremediation:Hydrocarbon 1.0 order Prymnesiales root:Environmental:Aquatic:Marine 18.0 @@ -47552,7 +48723,7 @@ genus Planktomarina root:Environmental:Aquatic:Marine 45.0 genus Planktomarina root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Planktomarina root:Environmental:Aquatic:Marine:Oceanic 16.0 genus Planktomarina root:Environmental:Aquatic:Estuary:Sediment 2.0 -genus Planktomarina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 29.0 +genus Planktomarina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30.0 genus Planktomarina root:Environmental:Aquatic:Marine:Sediment 1.0 genus Planktomarina root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Planktomarina root:Host-associated:Porifera 2.0 @@ -47567,7 +48738,7 @@ species Chrysochromulina sp. NIES-1333 root:Environmental:Aquatic:Marine 5.0 species Chrysochromulina sp. NIES-1333 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Chrysochromulina sp. NIES-1333 root:Environmental:Aquatic:Lentic:Brackish 7.0 species Chrysochromulina sp. NIES-1333 root:Environmental:Aquatic:Marine:Coastal 1.0 -species alpha proteobacterium SCGC AAA536-K22 root:Environmental:Aquatic:Marine 7.0 +species alpha proteobacterium SCGC AAA536-K22 root:Environmental:Aquatic:Marine 8.0 species Candidatus Actinomarina minuta root:Environmental:Aquatic:Marine 4.0 species Micromonas pusilla root:Environmental:Aquatic:Marine 16.0 species Micromonas pusilla root:Host-associated:Fish 1.0 @@ -47602,7 +48773,7 @@ species uncultured bacterium ARCTIC24 F 09 root:Environmental:Aquatic:Marine:Sed species uncultured bacterium ARCTIC24 F 09 root:Environmental:Aquatic 1.0 species uncultured bacterium ARCTIC24 F 09 root:Environmental:Aquatic:Marine:Pelagic 1.0 species uncultured bacterium ARCTIC24 F 09 root:Host-associated:Fish:Skin 1.0 -genus Colwellia root:Environmental:Aquatic:Marine 38.0 +genus Colwellia root:Environmental:Aquatic:Marine 40.0 genus Colwellia root:Host-associated:Fish 1.0 genus Colwellia root:Environmental:Aquatic:Marine:Oceanic 8.0 genus Colwellia root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -47622,12 +48793,14 @@ genus Colwellia root:Environmental:Aquatic:Marine:Brackish 1.0 genus Colwellia root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Colwellia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 4.0 genus Colwellia root:Environmental:Aquatic:Marine:Pelagic 4.0 +genus Colwellia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Colwellia root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 3.0 genus Colwellia root:Host-associated:Algae 1.0 genus Colwellia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Colwellia root:Environmental:Aquatic:Aquaculture 2.0 genus Colwellia root:Host-associated:Arthropoda 1.0 genus Colwellia root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +genus Colwellia root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 genus Colwellia root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 genus Adineta root:Environmental:Aquatic:Marine 1.0 genus Adineta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -47657,13 +48830,52 @@ species Proteobacteria bacterium JGI 0000113-E04 root:Environmental:Aquatic:Mari species Proteobacteria bacterium JGI 0000113-E04 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Proteobacteria bacterium JGI 0000113-E04 root:Environmental:Aquatic:Marine:Sediment 1.0 species Proteobacteria bacterium JGI 0000113-E04 root:Environmental:Aquatic:Marine:Pelagic 2.0 -class Balneolia root:Environmental:Aquatic:Marine 25.0 +family Aurantimonadaceae root:Environmental:Aquatic:Marine 9.0 +family Aurantimonadaceae root:Host-associated:Plants 1.0 +family Aurantimonadaceae root:Host-associated:Human:Skin 1.0 +family Aurantimonadaceae root:Environmental:Aquatic:Thermal springs 1.0 +family Aurantimonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Aurantimonas root:Environmental:Aquatic:Marine 7.0 +genus Aurantimonas root:Environmental:Terrestrial:Soil 1.0 +genus Leeuwenhoekiella root:Environmental:Aquatic:Marine 16.0 +genus Leeuwenhoekiella root:Host-associated:Fish 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine 25.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Hyphomonas root:Environmental:Terrestrial:Geologic 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Hyphomonas root:Engineered:Bioreactor 1.0 +genus Hyphomonas root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Hyphomonas root:Environmental:Terrestrial:Soil 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Hyphomonas root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Coastal 3.0 +genus Hyphomonas root:Host-associated:Mollusca 1.0 +genus Hyphomonas root:Environmental:Terrestrial:Soil:Sand 2.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Brackish 7.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 +genus Hyphomonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +genus Hyphomonas root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 +genus Hyphomonas root:Host-associated:Arthropoda 1.0 +genus Hyphomonas root:Engineered:Bioremediation 1.0 +genus Hoeflea root:Environmental:Aquatic:Marine 10.0 +genus Hoeflea root:Engineered:Wastewater:Activated Sludge 1.0 +species Hoeflea sp. BAL378 root:Environmental:Aquatic:Marine 9.0 +species Muricauda ruestringensis root:Environmental:Aquatic:Marine 9.0 +species Muricauda ruestringensis root:Environmental:Aquatic:Marine:Oceanic 2.0 +class Balneolia root:Environmental:Aquatic:Marine 30.0 class Balneolia root:Environmental:Aquatic:Marine:Oceanic 3.0 class Balneolia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 8.0 class Balneolia root:Environmental:Aquatic:Estuary:Sediment 1.0 class Balneolia root:Engineered:Bioreactor 1.0 +class Balneolia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Balneolia root:Environmental:Aquatic:Marine:Sediment 1.0 class Balneolia root:Environmental:Aquatic:Sediment 1.0 +class Balneolia root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Balneolia root:Engineered:Lab enrichment 1.0 class Balneolia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 class Balneolia root:Environmental:Aquatic:Marine:Coastal 5.0 class Balneolia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -47672,7 +48884,6 @@ class Balneolia root:Environmental:Aquatic:Marine:Brackish 1.0 class Balneolia root:Environmental:Aquatic:Marine:Pelagic 1.0 class Balneolia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 class Balneolia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -class Balneolia root:Engineered:Lab enrichment 1.0 class Balneolia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 4.0 class Balneolia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 class Balneolia root:Engineered 1.0 @@ -47697,8 +48908,10 @@ genus Balneola root:Environmental:Aquatic:Marine 30.0 genus Balneola root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Balneola root:Host-associated:Plants 2.0 genus Balneola root:Engineered:Wastewater 1.0 +genus Balneola root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Balneola root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Balneola root:Environmental:Terrestrial:Soil 1.0 +genus Balneola root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Balneola root:Host-associated:Porifera 2.0 genus Balneola root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 6.0 genus Balneola root:Environmental:Aquatic:Marine:Coastal 10.0 @@ -47746,10 +48959,10 @@ order Picomonadida root:Environmental:Aquatic:Marine:Oceanic 6.0 order Picomonadida root:Environmental:Aquatic:Marine:Coastal 1.0 order Picomonadida root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Picomonadidae root:Environmental:Aquatic:Marine 5.0 -family Picomonadidae root:Environmental:Aquatic:Marine:Oceanic 3.0 +family Picomonadidae root:Environmental:Aquatic:Marine:Oceanic 4.0 family Picomonadidae root:Environmental:Aquatic:Marine:Coastal 1.0 genus Picomonas root:Environmental:Aquatic:Marine 7.0 -genus Picomonas root:Environmental:Aquatic:Marine:Oceanic 8.0 +genus Picomonas root:Environmental:Aquatic:Marine:Oceanic 9.0 genus Picomonas root:Environmental:Aquatic:Marine:Sediment 1.0 genus Picomonas root:Environmental:Aquatic:Marine:Coastal 4.0 genus Picomonas root:Environmental:Aquatic:Marine:Pelagic 1.0 @@ -47773,10 +48986,10 @@ species Chrysochromulina sp. CCMP291 root:Environmental:Aquatic:Lentic:Brackish species Chrysochromulina sp. CCMP291 root:Environmental:Aquatic:Marine:Coastal 1.0 species Chrysochromulina sp. CCMP291 root:Host-associated:Algae 2.0 species Picomonas judraskeda root:Environmental:Aquatic:Marine 9.0 -species Picomonas judraskeda root:Environmental:Aquatic:Marine:Oceanic 8.0 +species Picomonas judraskeda root:Environmental:Aquatic:Marine:Oceanic 9.0 species Picomonas judraskeda root:Environmental:Aquatic:Marine:Coastal 2.0 species Picomonas judraskeda root:Environmental:Aquatic:Marine:Pelagic 1.0 -species SAR86 cluster bacterium SAR86E root:Environmental:Aquatic:Marine 9.0 +species SAR86 cluster bacterium SAR86E root:Environmental:Aquatic:Marine 10.0 species SAR86 cluster bacterium SAR86E root:Environmental:Aquatic:Marine:Oceanic 2.0 species SAR86 cluster bacterium SAR86E root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species SAR86 cluster bacterium SAR86E root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -47795,7 +49008,7 @@ family Centropagidae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Acartiidae root:Environmental:Aquatic:Marine 5.0 family Acartiidae root:Environmental:Aquatic:Marine:Sediment 1.0 family Acartiidae root:Environmental:Aquatic:Marine:Coastal 3.0 -family Amoebophryaceae root:Environmental:Aquatic:Marine 37.0 +family Amoebophryaceae root:Environmental:Aquatic:Marine 39.0 family Amoebophryaceae root:Environmental:Aquatic:Marine:Oceanic 14.0 family Amoebophryaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Amoebophryaceae root:Environmental:Aquatic 1.0 @@ -47817,8 +49030,9 @@ genus Centropages root:Environmental:Aquatic:Marine 7.0 genus Centropages root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Centropages root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Centropages root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 -genus Amoebophrya root:Environmental:Aquatic:Marine 38.0 +genus Amoebophrya root:Environmental:Aquatic:Marine 40.0 genus Amoebophrya root:Environmental:Aquatic:Marine:Oceanic 15.0 +genus Amoebophrya root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Amoebophrya root:Environmental:Aquatic:Marine:Sediment 3.0 genus Amoebophrya root:Environmental:Aquatic 1.0 genus Amoebophrya root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -47861,15 +49075,15 @@ species uncultured organism root:Environmental:Aquatic:Marine:Hydrothermal vents species uncultured organism root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species uncultured organism root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species uncultured organism root:Environmental:Aquatic:Marine:Pelagic 1.0 -species uncultured organism root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species uncultured organism root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +species uncultured organism root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species uncultured organism root:Host-associated:Algae 1.0 species uncultured organism root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species uncultured organism root:Host-associated:Cnidaria 1.0 species Lingulodinium polyedrum root:Environmental:Aquatic:Marine 2.0 species Lingulodinium polyedrum root:Environmental:Aquatic:Marine:Sediment 1.0 species Lingulodinium polyedrum root:Environmental:Aquatic:Marine:Coastal 1.0 -family Idiomarinaceae root:Environmental:Aquatic:Marine 8.0 +family Idiomarinaceae root:Environmental:Aquatic:Marine 13.0 family Idiomarinaceae root:Environmental:Aquatic:Marine:Oceanic 3.0 family Idiomarinaceae root:Host-associated:Plants 1.0 family Idiomarinaceae root:Engineered:Bioreactor 1.0 @@ -47879,13 +49093,14 @@ family Idiomarinaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Idiomarinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Idiomarinaceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Idiomarinaceae root:Engineered:Food production 1.0 +family Idiomarinaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Idiomarinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 family Idiomarinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 family Idiomarinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 family Idiomarinaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 family Idiomarinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 family Idiomarinaceae root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 -family Prochloraceae root:Environmental:Aquatic:Marine 19.0 +family Prochloraceae root:Environmental:Aquatic:Marine 20.0 family Prochloraceae root:Environmental:Aquatic:Marine:Oceanic 13.0 family Prochloraceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Prochloraceae root:Mixed 1.0 @@ -47914,12 +49129,12 @@ genus Nitrosopumilus root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Nitrosopumilus root:Host-associated:Porifera 4.0 genus Nitrosopumilus root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Nitrosopumilus root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Nitrosopumilus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 2.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Coastal 6.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 3.0 -genus Nitrosopumilus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Nitrosopumilus root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Nitrosopumilus root:Environmental:Aquatic:Estuary 1.0 genus Nitrosopumilus root:Host-associated:Mollusca 1.0 @@ -47939,19 +49154,19 @@ genus Nitrosopumilus root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 species uncultured prymnesiophyte C19847 root:Environmental:Aquatic:Marine 2.0 species uncultured prymnesiophyte C19847 root:Environmental:Aquatic:Marine:Oceanic 1.0 species uncultured prymnesiophyte C19847 root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -species Hoeflea sp. BAL378 root:Environmental:Aquatic:Marine 1.0 species Nitrosopumilus sp. Nsub root:Environmental:Aquatic:Marine 1.0 species Nitrosopumilus sp. Nsub root:Environmental:Aquatic:Marine:Coastal 1.0 species Woeseia oceani root:Environmental:Aquatic:Marine 10.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Oceanic 1.0 species Woeseia oceani root:Environmental:Aquatic:Estuary:Sediment 4.0 species Woeseia oceani root:Engineered:Bioreactor 2.0 -species Woeseia oceani root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 +species Woeseia oceani root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Sediment 4.0 species Woeseia oceani root:Host-associated:Porifera 1.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Coastal 1.0 +species Woeseia oceani root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Woeseia oceani root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Woeseia oceani root:Environmental:Aquatic:Estuary 1.0 species Woeseia oceani root:Environmental:Terrestrial:Soil:Sand 2.0 @@ -47967,7 +49182,7 @@ class Archaeoglobi root:Environmental:Aquatic:Marine 3.0 class Archaeoglobi root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 class Archaeoglobi root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 class Archaeoglobi root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Archaeoglobi root:Environmental:Aquatic:Marine:Sediment 1.0 +class Archaeoglobi root:Environmental:Aquatic:Marine:Sediment 2.0 class Archaeoglobi root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 class Archaeoglobi root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class Archaeoglobi root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -47981,6 +49196,7 @@ class Archaeoglobi root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 order Archaeoglobales root:Environmental:Aquatic:Marine 3.0 order Archaeoglobales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Archaeoglobales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +order Archaeoglobales root:Environmental:Aquatic:Marine:Sediment 1.0 order Archaeoglobales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Archaeoglobales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Archaeoglobales root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -47995,7 +49211,7 @@ order Archaeoglobales root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 family Archaeoglobaceae root:Environmental:Aquatic:Marine 3.0 family Archaeoglobaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Archaeoglobaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -family Archaeoglobaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Archaeoglobaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Archaeoglobaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Archaeoglobaceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 family Archaeoglobaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 5.0 @@ -48010,6 +49226,7 @@ family Fervidobacteriaceae root:Environmental:Aquatic:Marine 1.0 family Fervidobacteriaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Fervidobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 family Fervidobacteriaceae root:Engineered:Wastewater:Activated Sludge 1.0 +family Fervidobacteriaceae root:Host-associated:Mammals 1.0 family Fervidobacteriaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Fervidobacteriaceae root:Engineered:Biogas plant:Wet fermentation 1.0 family Fervidobacteriaceae root:Environmental:Aquatic:Thermal springs 1.0 @@ -48050,6 +49267,7 @@ genus Candidatus Izimaplasma root:Environmental:Aquatic:Estuary 7.0 species Nitrospirae bacterium JdFR-88 root:Environmental:Aquatic:Marine 1.0 species Nitrospirae bacterium JdFR-88 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Acetothermia bacterium 64 32 root:Environmental:Aquatic:Marine 2.0 +species Acetothermia bacterium 64 32 root:Environmental:Aquatic:Marine:Sediment 1.0 species Acetothermia bacterium 64 32 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Archaeoglobus fulgidus root:Environmental:Aquatic:Marine 2.0 species Archaeoglobus fulgidus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 @@ -48075,9 +49293,9 @@ species Candidatus Izimaplasma sp. HR1 root:Environmental:Aquatic:Estuary 3.0 species Candidatus Izimaplasma sp. HR1 root:Engineered:Bioreactor:Continuous culture 1.0 species Candidatus Izimaplasma sp. HR1 root:Environmental:Aquatic:Marine:Pelagic 1.0 species Candidatus Izimaplasma sp. HR1 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 -class Insecta root:Environmental:Aquatic:Marine 7.0 +class Insecta root:Environmental:Aquatic:Marine 8.0 class Insecta root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -class Insecta root:Environmental:Aquatic:Marine:Oceanic 2.0 +class Insecta root:Environmental:Aquatic:Marine:Oceanic 3.0 class Insecta root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 class Insecta root:Host-associated:Plants 4.0 class Insecta root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -48108,6 +49326,7 @@ class Insecta root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 class Insecta root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Insecta root:Environmental:Terrestrial:Soil:Loam 1.0 class Insecta root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 +class Insecta root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 order Hymenoptera root:Environmental:Aquatic:Marine 3.0 order Hymenoptera root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Hymenoptera root:Host-associated:Plants 1.0 @@ -48205,7 +49424,7 @@ species Owenweeksia hongkongensis root:Environmental:Aquatic:Marine:Oceanic:Bent species Owenweeksia hongkongensis root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 species Candidatus Atelocyanobacterium thalassa root:Environmental:Aquatic:Marine 2.0 species Candidatus Atelocyanobacterium thalassa root:Environmental:Aquatic:Marine:Coastal 1.0 -species Robiginitalea biformata root:Environmental:Aquatic:Marine 5.0 +species Robiginitalea biformata root:Environmental:Aquatic:Marine 8.0 species Robiginitalea biformata root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 species Ponticaulis koreensis root:Environmental:Aquatic:Marine 8.0 species Ponticaulis koreensis root:Environmental:Aquatic:Marine:Oceanic 3.0 @@ -48227,7 +49446,7 @@ phylum Ctenophora root:Environmental:Aquatic:Marine:Marginal Sea 2.0 phylum Ctenophora root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Ctenophora root:Host-associated:Arthropoda 1.0 phylum Ctenophora root:Host-associated:Microbial:Bacteria 1.0 -class Mamiellophyceae root:Environmental:Aquatic:Marine 38.0 +class Mamiellophyceae root:Environmental:Aquatic:Marine 39.0 class Mamiellophyceae root:Environmental:Aquatic:Marine:Oceanic 12.0 class Mamiellophyceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Mamiellophyceae root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -48341,7 +49560,7 @@ genus Chaetoceros root:Environmental:Aquatic:Marine:Oceanic 5.0 genus Chaetoceros root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Chaetoceros root:Mixed 1.0 genus Chaetoceros root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -genus Chaetoceros root:Environmental:Aquatic:Marine:Sediment 3.0 +genus Chaetoceros root:Environmental:Aquatic:Marine:Sediment 4.0 genus Chaetoceros root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Chaetoceros root:Environmental:Aquatic:Marine:Coastal 7.0 genus Chaetoceros root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -48349,7 +49568,7 @@ genus Chaetoceros root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Micromonas root:Environmental:Aquatic:Marine 32.0 genus Micromonas root:Host-associated:Fish 1.0 genus Micromonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Micromonas root:Environmental:Aquatic:Marine:Oceanic 11.0 +genus Micromonas root:Environmental:Aquatic:Marine:Oceanic 12.0 genus Micromonas root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 genus Micromonas root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Micromonas root:Environmental:Terrestrial:Soil 1.0 @@ -48395,6 +49614,7 @@ species Pyramimonas sp. RCC2500 root:Environmental:Aquatic:Marine:Coastal 2.0 species Pyramimonas sp. RCC2500 root:Host-associated:Algae 1.0 species Calliacantha natans root:Environmental:Aquatic:Marine 14.0 species Calliacantha natans root:Environmental:Aquatic:Marine:Oceanic 7.0 +species Calliacantha natans root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Calliacantha natans root:Environmental:Aquatic:Marine:Coastal 4.0 species Cyclotrichium cyclokaryon root:Environmental:Aquatic:Marine 5.0 species Cyclotrichium cyclokaryon root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -48414,7 +49634,7 @@ species Chaetoceros sp. RCC2564 root:Environmental:Aquatic:Marine:Coastal 1.0 species Chaetoceros sp. RCC2564 root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Chaetoceros sp. RCC2564 root:Host-associated:Algae 1.0 species Protoperidinium pellucidum root:Environmental:Aquatic:Marine 2.0 -order Collodaria root:Environmental:Aquatic:Marine 32.0 +order Collodaria root:Environmental:Aquatic:Marine 33.0 order Collodaria root:Environmental:Aquatic:Marine:Oceanic 7.0 order Collodaria root:Environmental:Aquatic:Lentic:Brackish 1.0 order Collodaria root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -48428,17 +49648,16 @@ order Diplonemida root:Environmental:Aquatic:Marine:Oceanic 1.0 order Diplonemida root:Environmental:Aquatic:Marine:Sediment 1.0 order Diplonemida root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 order Diplonemida root 1.0 -family Vannellidae root:Environmental:Aquatic:Marine 6.0 -genus Vannella root:Environmental:Aquatic:Marine 7.0 +family Vannellidae root:Environmental:Aquatic:Marine 7.0 +genus Vannella root:Environmental:Aquatic:Marine 8.0 genus Polycyclovorans root:Environmental:Aquatic:Marine 4.0 genus Polycyclovorans root:Environmental:Terrestrial:Soil 1.0 genus Polycyclovorans root:Environmental:Aquatic 2.0 genus Polycyclovorans root:Environmental:Aquatic:Marine:Coastal 1.0 -species Nocardioides sp. JS614 root:Environmental:Aquatic:Marine 8.0 species Mycobacterium obuense root:Environmental:Aquatic:Marine 1.0 -family Rubritaleaceae root:Environmental:Aquatic:Marine 9.0 +family Rubritaleaceae root:Environmental:Aquatic:Marine 10.0 family Rubritaleaceae root:Host-associated:Fish 1.0 -family Rubritaleaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Rubritaleaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Rubritaleaceae root:Host-associated:Plants 1.0 family Rubritaleaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Rubritaleaceae root:Environmental:Aquatic 1.0 @@ -48453,7 +49672,7 @@ family Rubritaleaceae root:Host-associated:Insecta 1.0 family Rubritaleaceae root:Host-associated:Algae 2.0 family Rubritaleaceae root:Host-associated:Fish:Skin 1.0 family Rubritaleaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 -genus Rubritalea root:Environmental:Aquatic:Marine 16.0 +genus Rubritalea root:Environmental:Aquatic:Marine 17.0 genus Rubritalea root:Host-associated:Fish 1.0 genus Rubritalea root:Environmental:Aquatic:Marine:Oceanic 4.0 genus Rubritalea root:Host-associated:Plants 1.0 @@ -48544,7 +49763,7 @@ family Gonyaulacaceae root:Environmental:Aquatic:Marine:Sediment 3.0 family Gonyaulacaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Gonyaulacaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Alexandrium root:Environmental:Aquatic:Marine 7.0 -genus Alexandrium root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Alexandrium root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Alexandrium root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Alexandrium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 genus Alexandrium root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -48555,11 +49774,11 @@ genus Draconibacterium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary genus Draconibacterium root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 genus Draconibacterium root:Environmental:Aquatic:Marine:Sediment 9.0 genus Draconibacterium root:Environmental:Aquatic:Sediment 2.0 +genus Draconibacterium root:Engineered:Lab enrichment 1.0 genus Draconibacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Draconibacterium root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Draconibacterium root:Host-associated:Invertebrates:Echinodermata 1.0 genus Draconibacterium root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -genus Draconibacterium root:Engineered:Lab enrichment 1.0 genus Draconibacterium root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Sinophysis root:Environmental:Aquatic:Marine 4.0 genus Sinophysis root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -48578,7 +49797,7 @@ species Tachidius triangularis root:Environmental:Aquatic:Marine 2.0 species Tachidius triangularis root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Tachidius triangularis root:Environmental:Aquatic:Marine:Coastal 1.0 species Heterosigma akashiwo root:Environmental:Aquatic:Marine 6.0 -species Heterosigma akashiwo root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 7.0 +species Heterosigma akashiwo root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 species Heterosigma akashiwo root:Environmental:Aquatic:Marine:Coastal 1.0 species Heterosigma akashiwo root:Environmental:Aquatic:Estuary 2.0 phylum Phaeophyceae root:Environmental:Aquatic:Marine 10.0 @@ -48605,7 +49824,7 @@ class Phyllopharyngea root:Environmental:Aquatic:Marine:Coastal 1.0 class Phyllopharyngea root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 class Phyllopharyngea root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 class Phyllopharyngea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -class Hydrozoa root:Environmental:Aquatic:Marine 38.0 +class Hydrozoa root:Environmental:Aquatic:Marine 39.0 class Hydrozoa root:Environmental:Aquatic:Marine:Oceanic 6.0 class Hydrozoa root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 class Hydrozoa root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -48617,8 +49836,8 @@ class Hydrozoa root:Environmental:Aquatic:Marine:Coastal 3.0 class Hydrozoa root:Environmental:Aquatic:Marine:Cold seeps 1.0 class Hydrozoa root:Environmental:Aquatic:Marine:Neritic zone 1.0 class Hydrozoa root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -class Hydrozoa root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Hydrozoa root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Hydrozoa root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Hydrozoa root:Host-associated:Arthropoda 1.0 class Hydrozoa root:Host-associated:Microbial:Bacteria 1.0 order Cydippida root:Environmental:Aquatic:Marine 2.0 @@ -48675,41 +49894,19 @@ genus Arenicella root:Host-associated:Algae 1.0 species Ephelota truncata root:Environmental:Aquatic:Marine 1.0 species Scytosiphon lomentaria root:Environmental:Aquatic:Marine 1.0 species Clytia sp. AGC-2001 root:Environmental:Aquatic:Marine 4.0 +species Clytia sp. AGC-2001 root:Environmental:Aquatic:Marine:Sediment 1.0 species Ephelota mammillata root:Environmental:Aquatic:Marine 1.0 species Harpacticus sp. France RJH 2007 root:Environmental:Aquatic:Marine 1.0 species Harpacticus sp. France RJH 2007 root:Environmental:Aquatic:Marine:Coastal 1.0 species Strombidinopsis acuminata root:Environmental:Aquatic:Marine 1.0 species Jassa slatteryi root:Environmental:Aquatic:Marine 1.0 species Sulfuriflexus mobilis root:Environmental:Aquatic:Marine 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine 39.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic 18.0 -genus Pseudohongiella root:Host-associated:Plants 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -genus Pseudohongiella root:Mixed 3.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Sediment 9.0 -genus Pseudohongiella root:Host-associated:Porifera 7.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 3.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Coastal 11.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Brackish 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Pelagic 4.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 4.0 -genus Pseudohongiella root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species uncultured marine cyanobacterium root:Environmental:Aquatic:Marine 4.0 species uncultured marine cyanobacterium root:Environmental:Aquatic:Marine:Oceanic 2.0 species uncultured marine cyanobacterium root:Host-associated:Porifera 1.0 species uncultured marine cyanobacterium root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species uncultured marine cyanobacterium root:Environmental:Aquatic:Marine:Coastal 1.0 -species SAR86 cluster bacterium REDSEA-S09 B4 root:Environmental:Aquatic:Marine 10.0 +species SAR86 cluster bacterium REDSEA-S09 B4 root:Environmental:Aquatic:Marine 11.0 species SAR86 cluster bacterium REDSEA-S09 B4 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species SAR86 cluster bacterium REDSEA-S09 B4 root:Environmental:Aquatic:Marine:Oceanic 13.0 species SAR86 cluster bacterium REDSEA-S09 B4 root:Environmental:Aquatic:Lentic:Brackish 1.0 @@ -48790,7 +49987,7 @@ family Sandaracinaceae root:Host-associated:Human:Digestive system:Large intesti family Sandaracinaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Sandaracinaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Sandaracinaceae root:Host-associated:Plants:Rhizosphere 1.0 -family Sandaracinaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 +family Sandaracinaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 family Sandaracinaceae root:Environmental:Terrestrial:Soil 1.0 family Sandaracinaceae root:Environmental:Aquatic:Marine:Sediment 17.0 family Sandaracinaceae root:Environmental:Aquatic:Sediment 1.0 @@ -48814,9 +50011,9 @@ genus Methanococcus root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse genus Deferrisoma root:Environmental:Aquatic:Marine 2.0 genus Deferrisoma root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Deferrisoma root:Environmental:Aquatic:Marine:Sediment 5.0 +genus Deferrisoma root:Engineered:Lab enrichment 1.0 genus Deferrisoma root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Deferrisoma root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -genus Deferrisoma root:Engineered:Lab enrichment 1.0 genus Dethiosulfatibacter root:Environmental:Aquatic:Marine 2.0 genus Dethiosulfatibacter root:Environmental:Aquatic:Marine:Sediment 3.0 genus Dethiosulfatibacter root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -48826,8 +50023,8 @@ species bacterium enrichment culture clone AOM-SR-B4 root:Environmental:Aquatic: species bacterium enrichment culture clone AOM-SR-B4 root:Engineered:Bioreactor:Continuous culture 1.0 species bacterium enrichment culture clone AOM-SR-B4 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 3.0 species Sulfurimonas gotlandica root:Environmental:Aquatic:Marine 2.0 -species Sulfurimonas gotlandica root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Sulfurimonas gotlandica root:Engineered:Lab enrichment 1.0 +species Sulfurimonas gotlandica root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Sulfurimonas gotlandica root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 species Dethiosulfatibacter aminovorans root:Environmental:Aquatic:Marine 2.0 species Dethiosulfatibacter aminovorans root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -48862,12 +50059,12 @@ species bacterium YC-LK-LKJ31 root:Host-associated:Plants:Rhizosphere 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Sediment 9.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Sediment 1.0 +species bacterium YC-LK-LKJ31 root:Engineered:Lab enrichment 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Cold seeps 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species bacterium YC-LK-LKJ31 root:Engineered:Bioreactor:Continuous culture 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 -species bacterium YC-LK-LKJ31 root:Engineered:Lab enrichment 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species bacterium YC-LK-LKJ31 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 species bacterium enrichment culture clone 7(2013) root:Environmental:Aquatic:Marine 1.0 @@ -48875,7 +50072,7 @@ species bacterium enrichment culture clone 7(2013) root:Environmental:Aquatic:Fr species bacterium enrichment culture clone 7(2013) root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 species bacterium enrichment culture clone 7(2013) root:Environmental:Aquatic:Marine:Sediment 5.0 species bacterium enrichment culture clone 7(2013) root:Environmental:Aquatic:Sediment 1.0 -genus Marinoscillum root:Environmental:Aquatic:Marine 28.0 +genus Marinoscillum root:Environmental:Aquatic:Marine 29.0 genus Marinoscillum root:Environmental:Aquatic:Marine:Oceanic 18.0 genus Marinoscillum root:Mixed 1.0 genus Marinoscillum root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -48909,13 +50106,6 @@ species Verrucomicrobia bacterium IMCC11245 root:Environmental:Aquatic:Marine:In species Verrucomicrobia bacterium IMCC11245 root:Environmental:Aquatic:Marine:Coastal 1.0 species Verrucomicrobia bacterium IMCC11245 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Albidovulum xiamenense root:Environmental:Aquatic:Marine 1.0 -family Aurantimonadaceae root:Environmental:Aquatic:Marine 5.0 -family Aurantimonadaceae root:Host-associated:Plants 1.0 -family Aurantimonadaceae root:Host-associated:Human:Skin 1.0 -family Aurantimonadaceae root:Environmental:Aquatic:Thermal springs 1.0 -family Aurantimonadaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -genus Aurantimonas root:Environmental:Aquatic:Marine 2.0 -genus Aurantimonas root:Environmental:Terrestrial:Soil 1.0 species SAR86 cluster bacterium BACL1 MAG-121128-bin56 root:Environmental:Aquatic:Marine 10.0 species SAR86 cluster bacterium BACL1 MAG-121128-bin56 root:Environmental:Aquatic:Marine:Oceanic 3.0 species SAR86 cluster bacterium BACL1 MAG-121128-bin56 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -48926,9 +50116,10 @@ species marine gamma proteobacterium HTCC2080 root:Environmental:Aquatic:Marine: species marine gamma proteobacterium HTCC2080 root:Host-associated:Porifera 1.0 species marine gamma proteobacterium HTCC2080 root:Environmental:Aquatic:Marine:Coastal 1.0 species marine gamma proteobacterium HTCC2080 root:Environmental:Aquatic:Estuary 1.0 +species marine gamma proteobacterium HTCC2080 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Rhodobacteraceae bacterium HTCC2150 root:Environmental:Aquatic:Marine 3.0 species Rhodobacteraceae bacterium HTCC2150 root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Noctiluca scintillans root:Environmental:Aquatic:Marine 11.0 +species Noctiluca scintillans root:Environmental:Aquatic:Marine 12.0 species Noctiluca scintillans root:Environmental:Aquatic:Marine:Oceanic 4.0 species Noctiluca scintillans root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 species Noctiluca scintillans root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -48937,17 +50128,76 @@ species Noctiluca scintillans root:Environmental:Aquatic:Marine:Coastal 2.0 species Noctiluca scintillans root:Environmental:Aquatic:Estuary 2.0 species Noctiluca scintillans root:Environmental:Aquatic:Marine:Pelagic 2.0 species Noctiluca scintillans root:Host-associated:Arthropoda 1.0 -species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine 14.0 +species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine 15.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Oceanic 8.0 -species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Sediment 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Coastal 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Estuary 1.0 +species Marinimicrobia bacterium JGI 0000113-D11 root:Host-associated:Fish:Digestive system 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Pelagic 1.0 -species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +species Marinimicrobia bacterium JGI 0000113-D11 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Marinimicrobia bacterium JGI 0000113-D11 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Marinimicrobia bacterium JGI 0000113-D11 root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine 40.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Methylophaga root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Methylophaga root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Methylophaga root:Host-associated:Human:Digestive system:Oral 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +genus Methylophaga root:Environmental:Terrestrial:Soil 3.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Sediment 5.0 +genus Methylophaga root:Environmental:Aquatic:Sediment 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Coastal 2.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Neritic zone 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 +genus Methylophaga root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +genus Methylophaga root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +genus Methylophaga root:Host-associated:Mollusca 1.0 +genus Methylophaga root:Environmental:Aquatic:Freshwater:Groundwater 2.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 +genus Methylophaga root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 +genus Thalassospira root:Environmental:Aquatic:Marine 21.0 +genus Thalassospira root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Thalassospira root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Thalassospira root:Host-associated:Plants 2.0 +genus Thalassospira root:Mixed 1.0 +genus Thalassospira root:Host-associated:Plants:Rhizosphere 1.0 +genus Thalassospira root:Environmental:Terrestrial:Soil 3.0 +genus Thalassospira root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Thalassospira root:Host-associated:Human:Digestive system 1.0 +genus Thalassospira root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Thalassospira root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 +genus Thalassospira root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +genus Thalassospira root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +genus Thalassospira root:Engineered:Wastewater:Industrial wastewater 1.0 +genus Thalassospira root:Environmental:Terrestrial:Soil:Sand 3.0 +genus Thalassospira root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +genus Thalassospira root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 +species Methylophaga muralis root:Environmental:Aquatic:Marine 21.0 +species Methylophaga muralis root:Environmental:Aquatic:Sediment 1.0 +species Polycyclovorans algicola root:Environmental:Aquatic:Marine 5.0 +species Polycyclovorans algicola root:Environmental:Aquatic:Marine:Sediment 1.0 +species Polycyclovorans algicola root:Environmental:Aquatic 2.0 +species Polycyclovorans algicola root:Environmental:Terrestrial:Soil:Sand 2.0 +species Polycyclovorans algicola root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 +species Haliea salexigens root:Environmental:Aquatic:Marine 1.0 +species Idiomarina abyssalis root:Environmental:Aquatic:Marine 6.0 +species Idiomarina abyssalis root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Oceanicaulis alexandrii root:Environmental:Aquatic:Marine 3.0 +species Oceanicaulis alexandrii root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Oceanicaulis alexandrii root:Environmental:Terrestrial:Soil:Sand 1.0 +species Aequorivita vladivostokensis root:Environmental:Aquatic:Marine 1.0 +species Idiomarina loihiensis root:Environmental:Aquatic:Marine 4.0 +species Idiomarina loihiensis root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +species Nisaea denitrificans root:Environmental:Aquatic:Marine 6.0 +species Nisaea denitrificans root:Host-associated:Microbial:Bacteria 1.0 +species Porticoccus hydrocarbonoclasticus root:Environmental:Aquatic:Marine 5.0 family Nannocystaceae root:Environmental:Aquatic:Marine 2.0 family Nannocystaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Nannocystaceae root:Engineered:Bioreactor 2.0 @@ -48959,7 +50209,7 @@ family Nannocystaceae root:Environmental:Aquatic:Marine:Brackish 2.0 family Nannocystaceae root 1.0 genus Bigelowiella root:Environmental:Aquatic:Marine 1.0 species Micromonas commoda root:Environmental:Aquatic:Marine 4.0 -species Micromonas commoda root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Micromonas commoda root:Environmental:Aquatic:Marine:Oceanic 2.0 species Micromonas commoda root:Environmental:Aquatic:Marine:Coastal 2.0 species Micromonas commoda root:Environmental:Aquatic:Estuary 1.0 species Micromonas commoda root:Environmental:Aquatic:Marine:Pelagic 2.0 @@ -48973,7 +50223,9 @@ species Stramenopiles sp. TOSAG23-2 root:Environmental:Aquatic:Marine:Intertidal species Stramenopiles sp. TOSAG23-2 root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 species Acanthamoeba castellanii root:Environmental:Aquatic:Marine 1.0 species Acanthamoeba castellanii root:Engineered:Bioreactor 1.0 +species Acanthamoeba castellanii root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Acanthamoeba castellanii root:Engineered:Wastewater 2.0 +species Acanthamoeba castellanii root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Acanthamoeba castellanii root:Host-associated:Plants:Rhizosphere 2.0 species Acanthamoeba castellanii root:Environmental:Aquatic:Freshwater:Wetlands 1.0 species Acanthamoeba castellanii root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -49085,7 +50337,7 @@ family Candidatus Brocadiaceae root:Environmental:Aquatic:Marine:Neritic zone:Se genus Candidatus Scalindua root:Environmental:Aquatic:Marine 11.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Candidatus Scalindua root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Sediment 11.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -49095,7 +50347,7 @@ genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Candidatus Scalindua root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 -species SAR324 cluster bacterium SCGC AB-629-J17 root:Environmental:Aquatic:Marine 10.0 +species SAR324 cluster bacterium SCGC AB-629-J17 root:Environmental:Aquatic:Marine 11.0 species SAR324 cluster bacterium SCGC AB-629-J17 root:Environmental:Aquatic:Marine:Oceanic 11.0 species SAR324 cluster bacterium SCGC AB-629-J17 root:Environmental:Aquatic:Marine:Sediment 1.0 species SAR324 cluster bacterium SCGC AB-629-J17 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -49190,29 +50442,7 @@ genus Nevskia root:Engineered:Bioreactor:Continuous culture 1.0 genus Nevskia root:Host-associated:Reptile:Oral cavity 1.0 genus Nevskia root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Nevskia root:Environmental 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine 18.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Hyphomonas root:Environmental:Terrestrial:Geologic 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 -genus Hyphomonas root:Engineered:Bioreactor 1.0 -genus Hyphomonas root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Hyphomonas root:Environmental:Terrestrial:Soil 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Sediment 2.0 -genus Hyphomonas root:Environmental:Aquatic:Freshwater:Lotic 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Coastal 3.0 -genus Hyphomonas root:Host-associated:Mollusca 1.0 -genus Hyphomonas root:Environmental:Terrestrial:Soil:Sand 2.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Brackish 7.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 -genus Hyphomonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -genus Hyphomonas root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -genus Hyphomonas root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 -genus Hyphomonas root:Host-associated:Arthropoda 1.0 -genus Hyphomonas root:Engineered:Bioremediation 1.0 -genus Brevundimonas root:Environmental:Aquatic:Marine 6.0 +genus Brevundimonas root:Environmental:Aquatic:Marine 7.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Brevundimonas root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -49227,18 +50457,19 @@ genus Brevundimonas root:Mixed 1.0 genus Brevundimonas root:Environmental:Terrestrial:Soil 1.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Sediment 3.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Brevundimonas root:Engineered:Lab enrichment 1.0 genus Brevundimonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -genus Brevundimonas root:Environmental:Aquatic:Freshwater 1.0 +genus Brevundimonas root:Environmental:Aquatic:Freshwater 2.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Coastal 2.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Brevundimonas root:Host-associated:Plants:Root 2.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Lentic 1.0 +genus Brevundimonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Brevundimonas root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Brevundimonas root:Engineered:Wastewater:Water and sludge 1.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Ice 1.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -genus Brevundimonas root:Engineered:Lab enrichment 1.0 genus Brevundimonas root:Environmental 1.0 genus Brevundimonas root:Host-associated:Animal 1.0 genus Brevundimonas root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -49246,6 +50477,7 @@ genus Brevundimonas root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 genus Brevundimonas root:Environmental:Terrestrial:Soil:Loam 1.0 genus Brevundimonas root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 species alpha proteobacterium BAL199 root:Environmental:Aquatic:Marine 6.0 +species alpha proteobacterium BAL199 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species alpha proteobacterium BAL199 root:Environmental:Aquatic:Marine:Sediment 1.0 species alpha proteobacterium BAL199 root:Environmental:Aquatic:Marine:Coastal 1.0 species alpha proteobacterium BAL199 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 @@ -49266,9 +50498,10 @@ species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Environmental:Terre species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Mixed 1.0 species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Engineered:Wastewater 1.0 species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Engineered:Lab enrichment 1.0 species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Environmental:Aquatic:Marine:Coastal 1.0 species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Engineered:Lab enrichment:Defined media 6.0 -species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Engineered:Lab enrichment 1.0 +species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Candidatus Diapherotrites archaeon ADurb.Bin253 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Eustigmatophyceae root:Environmental:Aquatic:Marine 16.0 phylum Eustigmatophyceae root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -49319,6 +50552,7 @@ phylum Cryptomycota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef phylum Cryptomycota root:Environmental:Aquatic:Marine:Coastal 2.0 phylum Cryptomycota root:Host-associated:Plants:Root 1.0 phylum Cryptomycota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +phylum Cryptomycota root:Engineered:Wastewater:Water and sludge 1.0 phylum Cryptomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Cryptomycota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Brachiopoda root:Environmental:Aquatic:Marine 1.0 @@ -49328,7 +50562,7 @@ class Mediophyceae root:Environmental:Aquatic:Marine:Sediment 1.0 class Mediophyceae root:Environmental:Aquatic:Marine:Coastal 1.0 class Mediophyceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 class Mediophyceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -class Oligohymenophorea root:Environmental:Aquatic:Marine 15.0 +class Oligohymenophorea root:Environmental:Aquatic:Marine 16.0 class Oligohymenophorea root:Environmental:Aquatic:Marine:Oceanic 1.0 class Oligohymenophorea root:Environmental:Aquatic:Estuary:Sediment 1.0 class Oligohymenophorea root:Engineered:Bioreactor 3.0 @@ -49431,16 +50665,17 @@ order Thermoplasmatales root:Environmental:Aquatic:Estuary:Sediment 1.0 order Thermoplasmatales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order Thermoplasmatales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Thermoplasmatales root:Environmental:Terrestrial:Soil:Permafrost 1.0 +order Thermoplasmatales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Thermoplasmatales root:Environmental:Terrestrial:Soil 1.0 order Thermoplasmatales root:Environmental:Aquatic:Marine:Sediment 8.0 order Thermoplasmatales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Thermoplasmatales root:Environmental:Terrestrial:Soil:Grasslands 2.0 +order Thermoplasmatales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Thermoplasmatales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Thermoplasmatales root:Environmental:Aquatic:Thermal springs 1.0 order Thermoplasmatales root:Environmental:Aquatic:Marine:Coastal 1.0 order Thermoplasmatales root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Thermoplasmatales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -order Thermoplasmatales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Thermoplasmatales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 order Thermoplasmatales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Thermoplasmatales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 @@ -49467,7 +50702,7 @@ species bacterium enrichment culture clone 136(2011) root:Environmental:Aquatic: species Deltaproteobacteria bacterium SKP-2 root:Environmental:Aquatic:Marine 3.0 species Deltaproteobacteria bacterium SKP-2 root:Environmental:Aquatic:Marine:Sediment 1.0 species Deltaproteobacteria bacterium SKP-2 root:Host-associated:Cnidaria 1.0 -order Bicosoecida root:Environmental:Aquatic:Marine 8.0 +order Bicosoecida root:Environmental:Aquatic:Marine 10.0 order Bicosoecida root:Environmental:Aquatic:Marine:Oceanic 1.0 order Bicosoecida root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Bicosoecida root:Environmental:Aquatic:Marine:Neritic zone 1.0 @@ -49498,11 +50733,11 @@ family Laminariaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Laminariaceae root:Environmental:Aquatic:Freshwater 1.0 family Ulvaceae root:Environmental:Aquatic:Marine 1.0 family Cucurbitaceae root:Environmental:Aquatic:Marine 2.0 -genus Caecitellus root:Environmental:Aquatic:Marine 5.0 +genus Caecitellus root:Environmental:Aquatic:Marine 6.0 genus Caecitellus root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Caecitellus root:Environmental:Aquatic:Marine:Neritic zone 1.0 genus Bathycoccus root:Environmental:Aquatic:Marine 1.0 -genus Ostreococcus root:Environmental:Aquatic:Marine 11.0 +genus Ostreococcus root:Environmental:Aquatic:Marine 12.0 genus Ostreococcus root:Environmental:Aquatic:Marine:Oceanic 3.0 genus Ostreococcus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Ostreococcus root:Environmental:Aquatic 1.0 @@ -49534,7 +50769,7 @@ species Saccharina japonica root:Environmental:Aquatic:Marine:Intertidal zone:Se species Saccharina japonica root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Saccharina japonica root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Nephromyces sp. MO-4G MBS2010 root:Environmental:Aquatic:Marine 1.0 -species Pelagomonas calceolata root:Environmental:Aquatic:Marine 5.0 +species Pelagomonas calceolata root:Environmental:Aquatic:Marine 7.0 species Pelagomonas calceolata root:Environmental:Aquatic:Marine:Oceanic 1.0 species Pelagomonas calceolata root:Environmental:Aquatic:Marine:Coastal 1.0 species Bolidomonas mediterranea root:Environmental:Aquatic:Marine 1.0 @@ -49543,6 +50778,17 @@ species Florenciellales sp. NIES-1871 root:Environmental:Aquatic:Marine:Oceanic: species Amoebophrya sp. ex Karlodinium micrum root:Environmental:Aquatic:Marine 3.0 species Amoebophrya sp. ex Karlodinium micrum root:Environmental:Aquatic:Marine:Oceanic 2.0 species Amoebophrya sp. ex Karlodinium micrum root:Environmental:Aquatic:Marine:Sediment 1.0 +order Candidatus Poseidoniales root:Environmental:Aquatic:Marine 2.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine 8.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oceanic 10.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Pelagic 1.0 +species Gemmatimonadetes bacterium SCGC AAA240-J22 root 1.0 +species Marinimicrobia bacterium SCGC AAA298-D23 root:Environmental:Aquatic:Marine 1.0 order Semaeostomeae root:Environmental:Aquatic:Marine 1.0 order Semaeostomeae root:Environmental:Aquatic:Marine:Oceanic 1.0 order Semaeostomeae root:Mixed 1.0 @@ -49572,7 +50818,7 @@ species Chrysaora melanaster root:Environmental:Aquatic:Marine:Intertidal zone:E species Chrysaora melanaster root:Environmental:Aquatic:Estuary 7.0 phylum Euglenida root:Environmental:Aquatic:Marine 2.0 phylum Euglenida root:Environmental:Aquatic:Marine:Oceanic 1.0 -order Spumellaria root:Environmental:Aquatic:Marine 13.0 +order Spumellaria root:Environmental:Aquatic:Marine 15.0 order Spumellaria root:Environmental:Aquatic:Marine:Oceanic 6.0 order Spumellaria root:Environmental:Aquatic:Marine:Sediment 3.0 order Spumellaria root:Environmental:Aquatic 1.0 @@ -49581,7 +50827,7 @@ order Spumellaria root:Environmental:Aquatic:Marine:Marginal Sea 2.0 order Spumellaria root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Spumellaria root:Host-associated:Arthropoda 1.0 order Sphenomonadales root:Environmental:Aquatic:Marine 1.0 -order Chromulinales root:Environmental:Aquatic:Marine 9.0 +order Chromulinales root:Environmental:Aquatic:Marine 10.0 order Chromulinales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Chromulinales root:Environmental:Terrestrial:Soil 1.0 order Chromulinales root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -49599,6 +50845,7 @@ family Uronematidae root:Environmental:Aquatic:Marine 2.0 family Oxyrrhinaceae root:Environmental:Aquatic:Marine 2.0 family Ptychodiscaceae root:Environmental:Aquatic:Marine 2.0 genus Paraphysomonas root:Environmental:Aquatic:Marine 6.0 +genus Paraphysomonas root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Paraphysomonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Parallelostrombidium root:Environmental:Aquatic:Marine 1.0 genus Homalogastra root:Environmental:Aquatic:Marine 1.0 @@ -49637,50 +50884,13 @@ family Demequinaceae root:Engineered:Solid waste:Composting 1.0 genus Microbulbifer root:Environmental:Aquatic:Marine 4.0 genus Microbulbifer root:Host-associated:Plants 1.0 genus Microbulbifer root:Environmental:Aquatic:Estuary:Sediment 1.0 +genus Microbulbifer root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Microbulbifer root:Environmental:Aquatic:Marine:Sediment 1.0 genus Microbulbifer root:Host-associated:Porifera 1.0 genus Microbulbifer root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Demequina root:Environmental:Aquatic:Marine 5.0 genus Demequina root:Engineered:Solid waste:Composting:Grass 1.0 -genus Thalassospira root:Environmental:Aquatic:Marine 16.0 -genus Thalassospira root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Thalassospira root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Thalassospira root:Host-associated:Plants 2.0 -genus Thalassospira root:Mixed 1.0 -genus Thalassospira root:Host-associated:Plants:Rhizosphere 1.0 -genus Thalassospira root:Environmental:Terrestrial:Soil 3.0 -genus Thalassospira root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Thalassospira root:Host-associated:Human:Digestive system 1.0 -genus Thalassospira root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Thalassospira root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 -genus Thalassospira root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus Thalassospira root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Thalassospira root:Engineered:Wastewater:Industrial wastewater 1.0 -genus Thalassospira root:Environmental:Terrestrial:Soil:Sand 3.0 -genus Thalassospira root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -genus Thalassospira root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine 32.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Methylophaga root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 -genus Methylophaga root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Methylophaga root:Host-associated:Human:Digestive system:Oral 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Methylophaga root:Environmental:Terrestrial:Soil 3.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Sediment 5.0 -genus Methylophaga root:Environmental:Aquatic:Sediment 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Coastal 2.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Neritic zone 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -genus Methylophaga root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Methylophaga root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -genus Methylophaga root:Host-associated:Mollusca 1.0 -genus Methylophaga root:Environmental:Aquatic:Freshwater:Groundwater 2.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Pelagic 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 -genus Methylophaga root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 -genus Devosia root:Environmental:Aquatic:Marine 8.0 +genus Devosia root:Environmental:Aquatic:Marine 9.0 genus Devosia root:Host-associated:Plants 2.0 genus Devosia root:Engineered:Bioreactor 9.0 genus Devosia root:Engineered:Wastewater:Activated Sludge 2.0 @@ -49689,11 +50899,11 @@ genus Devosia root:Engineered:Wastewater 2.0 genus Devosia root:Host-associated:Plants:Rhizosphere 4.0 genus Devosia root:Environmental:Terrestrial:Soil 2.0 genus Devosia root:Engineered:Biogas plant:Wet fermentation 1.0 -genus Devosia root:Environmental:Aquatic:Freshwater 1.0 +genus Devosia root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Devosia root:Environmental:Aquatic:Freshwater 2.0 genus Devosia root:Engineered:Solid waste:Composting 3.0 genus Devosia root:Environmental:Terrestrial:Soil:Desert 2.0 genus Devosia root:Host-associated:Plants:Root 2.0 -genus Devosia root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Devosia root:Engineered:Bioreactor:Continuous culture 1.0 genus Devosia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Devosia root:Host-associated:Plants:Phylloplane:Endophytes 1.0 @@ -49740,12 +50950,12 @@ family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marin family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marine:Sediment 4.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Sediment 1.0 family Clostridiales Family XII. Incertae Sedis root:Host-associated:Porifera 1.0 +family Clostridiales Family XII. Incertae Sedis root:Engineered:Lab enrichment 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marine:Coastal 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Clostridiales Family XII. Incertae Sedis root:Engineered:Wastewater:Industrial wastewater 1.0 family Clostridiales Family XII. Incertae Sedis root:Engineered:Bioreactor:Continuous culture 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -family Clostridiales Family XII. Incertae Sedis root:Engineered:Lab enrichment 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Terrestrial:Oil reservoir 1.0 family Clostridiales Family XII. Incertae Sedis root:Environmental:Aquatic:Marine:Wetlands 1.0 @@ -49864,9 +51074,9 @@ family Micromonosporaceae root:Environmental:Terrestrial:Soil:Contaminated 1.0 family Micromonosporaceae root:Host-associated:Plants:Rhizosphere 1.0 family Micromonosporaceae root:Environmental:Terrestrial:Soil 14.0 family Micromonosporaceae root:Environmental:Terrestrial:Soil:Grasslands 5.0 +family Micromonosporaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Micromonosporaceae root:Engineered:Solid waste:Composting 2.0 family Micromonosporaceae root:Environmental:Terrestrial:Soil:Desert 5.0 -family Micromonosporaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Micromonosporaceae root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 family Micromonosporaceae root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family Micromonosporaceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 @@ -49882,6 +51092,7 @@ family Promicromonosporaceae root:Host-associated:Animal:Digestive system 1.0 family Promicromonosporaceae root:Host-associated:Insecta 1.0 family Promicromonosporaceae root:Host-associated:Human:Circulatory system 1.0 genus Labrenzia root:Environmental:Aquatic:Marine 2.0 +genus Labrenzia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Labrenzia root:Environmental:Aquatic:Marine:Brackish 1.0 genus Micromonospora root:Environmental:Aquatic:Marine 3.0 genus Micromonospora root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -49902,7 +51113,7 @@ species Photobacterium halotolerans root:Environmental:Aquatic:Marine 1.0 order Salinisphaerales root:Environmental:Aquatic:Marine 2.0 order Salinisphaerales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Salinisphaerales root:Environmental:Aquatic:Freshwater:Lotic:Acidic 1.0 -family Algiphilaceae root:Environmental:Aquatic:Marine 1.0 +family Algiphilaceae root:Environmental:Aquatic:Marine 2.0 genus Rubripirellula root:Environmental:Aquatic:Marine 4.0 genus Rubripirellula root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Rubripirellula root:Mixed 1.0 @@ -49917,6 +51128,7 @@ species Polaribacter sp. R-2-R-3-1 root:Environmental:Aquatic:Marine 1.0 species Methylophaga sp. PBVC023FULL root:Environmental:Aquatic:Marine 1.0 species Methylophaga sp. PBVC023FULL root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 2.0 species gamma proteobacterium DG1301 root:Environmental:Aquatic:Marine 2.0 +species gamma proteobacterium DG1301 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species gamma proteobacterium DG1301 root:Environmental:Aquatic:Marine:Sediment 1.0 species gamma proteobacterium DG1301 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species gamma proteobacterium DG1301 root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 @@ -49927,23 +51139,27 @@ species Rhodopirellula sp. SM49 root:Environmental:Aquatic:Marine 1.0 species Celeribacter naphthalenivorans root:Environmental:Aquatic:Marine 1.0 species Rhodopirellula baltica root:Environmental:Aquatic:Marine 1.0 phylum Haptista root:Environmental:Aquatic:Marine 3.0 -phylum Haptista root:Environmental:Aquatic:Marine:Oceanic 4.0 -phylum Cercozoa root:Environmental:Aquatic:Marine 3.0 +phylum Haptista root:Environmental:Aquatic:Marine:Oceanic 5.0 +phylum Haptista root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +phylum Cercozoa root:Environmental:Aquatic:Marine 4.0 phylum Cercozoa root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Cercozoa root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Cercozoa root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Cercozoa root:Host-associated:Plants 3.0 phylum Cercozoa root:Environmental:Terrestrial:Soil 1.0 +phylum Cercozoa root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Cercozoa root:Environmental:Aquatic:Freshwater 1.0 phylum Cercozoa root:Environmental:Aquatic:Marine:Coastal 1.0 phylum Cercozoa root:Environmental:Terrestrial:Deep subsurface 1.0 -phylum Cercozoa root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Cercozoa root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +phylum Cercozoa root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 phylum Cercozoa root:Engineered:Built environment 1.0 class Haptophyta root:Environmental:Aquatic:Marine 2.0 -class Haptophyta root:Environmental:Aquatic:Marine:Oceanic 4.0 -class Hexanauplia root:Environmental:Aquatic:Marine 4.0 -class Hexanauplia root:Environmental:Aquatic:Marine:Oceanic 6.0 +class Haptophyta root:Environmental:Aquatic:Marine:Oceanic 5.0 +class Hexanauplia root:Environmental:Aquatic:Marine 5.0 +class Hexanauplia root:Environmental:Aquatic:Marine:Oceanic 8.0 +class Hexanauplia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +class Hexanauplia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 class Hexanauplia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 class Hexanauplia root:Environmental:Aquatic:Marine:Coastal 1.0 class Hexanauplia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 @@ -49953,7 +51169,7 @@ order Pirsoniales root:Environmental:Aquatic:Marine 1.0 order Nassellaria root:Environmental:Aquatic:Marine 3.0 order Nassellaria root:Environmental:Aquatic:Marine:Oceanic 2.0 order Nassellaria root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -family Sticholonchidae root:Environmental:Aquatic:Marine 3.0 +family Sticholonchidae root:Environmental:Aquatic:Marine 4.0 family Plagoniidae root:Environmental:Aquatic:Marine 3.0 family Plagoniidae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Strobilidiidae root:Environmental:Aquatic:Marine 12.0 @@ -49964,10 +51180,10 @@ family Geminigeraceae root:Environmental:Aquatic:Marine 9.0 family Geminigeraceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Geminigeraceae root:Environmental:Aquatic:Marine:Coastal 2.0 family Geminigeraceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -genus Sticholonche root:Environmental:Aquatic:Marine 2.0 +genus Sticholonche root:Environmental:Aquatic:Marine 3.0 genus Pseudocubus root:Environmental:Aquatic:Marine 3.0 genus Pseudocubus root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Sticholonche sp. JB-2011 root:Environmental:Aquatic:Marine 3.0 +species Sticholonche sp. JB-2011 root:Environmental:Aquatic:Marine 4.0 species Sticholonche sp. JB-2011 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Strombidium capitatum root:Environmental:Aquatic:Marine 3.0 species Strombidium capitatum root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -49985,12 +51201,8 @@ family Ustilaginaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Ustilaginaceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Ustilaginaceae root:Host-associated:Insecta 1.0 family Ustilaginaceae root:Environmental:Air 1.0 -genus Leeuwenhoekiella root:Environmental:Aquatic:Marine 8.0 -genus Leeuwenhoekiella root:Host-associated:Fish 1.0 species Dioscorea alata root:Environmental:Aquatic:Marine 2.0 species Dioscorea alata root:Host-associated:Plants 3.0 -species Methylophaga muralis root:Environmental:Aquatic:Marine 17.0 -species Methylophaga muralis root:Environmental:Aquatic:Sediment 1.0 genus Candidatus Udaeobacter root:Environmental:Aquatic:Marine 1.0 genus Candidatus Udaeobacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Candidatus Udaeobacter root:Environmental:Terrestrial:Soil:Forest soil 2.0 @@ -50000,7 +51212,7 @@ genus Candidatus Udaeobacter root:Environmental:Aquatic:Freshwater:Lotic:Sedimen genus Candidatus Udaeobacter root:Mixed 7.0 genus Candidatus Udaeobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Candidatus Udaeobacter root:Host-associated:Plants:Rhizosphere 4.0 -genus Candidatus Udaeobacter root:Environmental:Terrestrial:Soil 28.0 +genus Candidatus Udaeobacter root:Environmental:Terrestrial:Soil 29.0 genus Candidatus Udaeobacter root:Environmental:Aquatic:Sediment 2.0 genus Candidatus Udaeobacter root:Environmental:Aquatic 1.0 genus Candidatus Udaeobacter root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 @@ -50042,6 +51254,7 @@ species Actinobacteria bacterium GWC2 53 9 root:Environmental:Aquatic:Sediment 1 species Thermacetogenium phaeum root:Environmental:Aquatic:Marine 1.0 species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Environmental:Aquatic:Marine 1.0 species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 species Syntrophobacterales bacterium RBG 19FT COMBO 59 10 root:Environmental:Aquatic:Marine:Intertidal zone 1.0 @@ -50056,6 +51269,7 @@ species bacterium Ellin6067 root:Host-associated:Plants:Rhizosphere 2.0 species bacterium Ellin6067 root:Environmental:Terrestrial:Soil 7.0 species bacterium Ellin6067 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 species bacterium Ellin6067 root:Host-associated:Insecta 1.0 +species bacterium Ellin6067 root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Moraxella bovoculi root:Environmental:Aquatic:Marine 1.0 species Moraxella bovoculi root:Host-associated:Mammals:Digestive system 1.0 species Moraxella bovoculi root:Host-associated:Human:Skin 1.0 @@ -50072,9 +51286,9 @@ species bacterium Ellin7505 root:Host-associated:Plants:Rhizosphere 1.0 species bacterium Ellin7505 root:Environmental:Terrestrial:Soil 6.0 species bacterium Ellin7505 root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium Ellin7505 root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +species bacterium Ellin7505 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species bacterium Ellin7505 root:Host-associated:Plants:Root 1.0 species bacterium Ellin7505 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -species bacterium Ellin7505 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species bacterium Ellin7505 root:Environmental:Aquatic:Thermal springs:Sediment 1.0 species bacterium Ellin7505 root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 species Actinobacteria bacterium RBG 19FT COMBO 36 27 root:Environmental:Aquatic:Marine 1.0 @@ -50108,9 +51322,10 @@ species Cryomorphaceae bacterium JNU-L074 root:Environmental:Aquatic:Marine:Coas species Cryomorphaceae bacterium JNU-L074 root:Environmental:Aquatic:Marine:Cold seeps 1.0 species Cryomorphaceae bacterium JNU-L074 root:Host-associated:Fish:Digestive system:Foregut 1.0 species Cryomorphaceae bacterium JNU-L074 root:Environmental:Aquatic:Aquaculture 1.0 -genus Muricauda root:Environmental:Aquatic:Marine 4.0 +genus Muricauda root:Environmental:Aquatic:Marine 10.0 genus Muricauda root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Muricauda root:Engineered:Bioreactor 1.0 +genus Muricauda root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Muricauda root:Environmental:Aquatic:Marine:Sediment 1.0 genus Muricauda root:Environmental:Aquatic:Marine:Coastal 2.0 genus Muricauda root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -50118,7 +51333,7 @@ genus Muricauda root:Environmental:Aquatic:Marine:Brackish 5.0 genus Aequorivita root:Environmental:Aquatic:Marine 1.0 genus Aequorivita root:Engineered:Bioreactor 1.0 genus Aequorivita root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -genus Cyclobacterium root:Environmental:Aquatic:Marine 1.0 +genus Cyclobacterium root:Environmental:Aquatic:Marine 3.0 genus Cyclobacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Microbacterium root:Environmental:Aquatic:Marine 3.0 genus Microbacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -50131,16 +51346,16 @@ genus Microbacterium root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Microbacterium root:Host-associated:Plants:Phylloplane 1.0 genus Microbacterium root:Environmental:Terrestrial:Soil 1.0 genus Microbacterium root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Microbacterium root:Engineered:Lab enrichment 2.0 +genus Microbacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Microbacterium root:Environmental:Aquatic:Freshwater 1.0 genus Microbacterium root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Microbacterium root:Engineered:Lab enrichment:Defined media 1.0 genus Microbacterium root:Host-associated:Plants:Root 1.0 -genus Microbacterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Microbacterium root:Host-associated:Insecta:Digestive system 2.0 genus Microbacterium root:Environmental:Aquatic:Marine:Brackish 1.0 genus Microbacterium root:Environmental:Aquatic:Freshwater:Groundwater 2.0 -genus Microbacterium root:Engineered:Built environment 2.0 -genus Microbacterium root:Engineered:Lab enrichment 2.0 +genus Microbacterium root:Engineered:Built environment 3.0 genus Microbacterium root:Engineered:Biogas plant 1.0 genus Microbacterium root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Microbacterium root:Host-associated:Mollusca:Digestive system 1.0 @@ -50154,16 +51369,16 @@ genus Reinekea root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminate species Aequorivita sublithincola root:Environmental:Aquatic:Marine 1.0 species Aequorivita sublithincola root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Aequorivita sublithincola root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 -species Muricauda ruestringensis root:Environmental:Aquatic:Marine 2.0 -species Muricauda ruestringensis root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Cyclobacterium marinum root:Environmental:Aquatic:Marine 1.0 +species Cyclobacterium marinum root:Environmental:Aquatic:Marine 3.0 species Microbacterium sp. LKL04 root:Environmental:Aquatic:Marine 1.0 species Microbacterium sp. LKL04 root:Engineered:Bioreactor 1.0 -species Balneola sp. EhC07 root:Environmental:Aquatic:Marine 1.0 +species Balneola sp. EhC07 root:Environmental:Aquatic:Marine 2.0 +species Balneola sp. EhC07 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Balneola sp. EhC07 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Pseudooceanicola nitratireducens root:Environmental:Aquatic:Marine 1.0 species Pseudooceanicola batsensis root:Environmental:Aquatic:Marine 1.0 species Thalassobaculum salexigens root:Environmental:Aquatic:Marine 1.0 -order Deinococcales root:Environmental:Aquatic:Marine 1.0 +order Deinococcales root:Environmental:Aquatic:Marine 2.0 order Deinococcales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Deinococcales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Deinococcales root:Host-associated:Plants 1.0 @@ -50174,9 +51389,9 @@ order Deinococcales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1. order Deinococcales root:Engineered:Food production:Dairy products 1.0 order Deinococcales root:Host-associated:Plants:Phylloplane 1.0 order Deinococcales root:Environmental:Terrestrial:Soil 2.0 +order Deinococcales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Deinococcales root:Engineered:Solid waste:Composting 2.0 order Deinococcales root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order Deinococcales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Deinococcales root:Engineered:Modeled:Simulated communities (sequence read mixture) 2.0 order Deinococcales root:Host-associated:Fish:Digestive system:Foregut 1.0 order Deinococcales root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -50191,7 +51406,7 @@ genus Altererythrobacter root:Environmental:Aquatic:Marine:Brackish 1.0 genus Altererythrobacter root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Altererythrobacter root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Altererythrobacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -genus Sphingorhabdus root:Environmental:Aquatic:Marine 2.0 +genus Sphingorhabdus root:Environmental:Aquatic:Marine 3.0 genus Sphingorhabdus root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Roseovarius root:Environmental:Aquatic:Marine 6.0 genus Roseovarius root:Host-associated:Fish 1.0 @@ -50239,6 +51454,7 @@ species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine:Sediment 5.0 species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 +species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Euryarchaeota archaeon SCGC AAA286-E23 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 species Euryarchaeota archaeon SCGC AAA286-E23 root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 species Sulfitobacter sp. EE-36 root:Environmental:Aquatic:Marine 9.0 @@ -50254,6 +51470,7 @@ genus Dictyocha root:Environmental:Aquatic:Marine:Oceanic 2.0 species Dictyocha speculum root:Environmental:Aquatic:Marine 2.0 species Dictyocha speculum root:Environmental:Aquatic:Marine:Oceanic 1.0 species Dictyocha speculum root:Environmental:Aquatic:Lentic:Brackish 1.0 +species Dictyocha speculum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum SBR1093 root:Environmental:Aquatic:Marine 2.0 phylum SBR1093 root:Environmental:Aquatic:Marine:Oceanic 2.0 phylum SBR1093 root:Engineered:Wastewater:Activated Sludge 1.0 @@ -50273,6 +51490,7 @@ phylum SBR1093 root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Oceanicaulis root:Environmental:Aquatic:Marine 9.0 genus Oceanicaulis root:Host-associated:Fish 2.0 genus Oceanicaulis root:Environmental:Aquatic:Marine:Oceanic 2.0 +genus Oceanicaulis root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Oceanicaulis root:Engineered:Bioreactor 1.0 genus Oceanicaulis root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 genus Oceanicaulis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -50329,6 +51547,23 @@ species Thalassobacter stenotrophicus root:Engineered:Biotransformation:Microbia species Thalassobacter stenotrophicus root:Engineered:Wastewater:Water and sludge 1.0 species Thalassobacter stenotrophicus root:Host-associated:Insecta 1.0 species Thalassobacter stenotrophicus root:Host-associated:Fish:Skin 1.0 +class Nitriliruptoria root:Environmental:Aquatic:Marine 6.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil:Agricultural 1.0 +class Nitriliruptoria root:Engineered:Bioreactor 1.0 +class Nitriliruptoria root:Host-associated:Mammals 1.0 +class Nitriliruptoria root:Engineered:Food production:Dairy products 1.0 +class Nitriliruptoria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil 2.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil:Desert 2.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil:Sand 1.0 +class Nitriliruptoria root:Environmental:Aquatic:Thermal springs:Sediment 1.0 +class Nitriliruptoria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 +class Nitriliruptoria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 +class Nitriliruptoria root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 +species Arenibacter sp. C-21 root:Environmental:Aquatic:Marine 2.0 +species Hoeflea phototrophica root:Environmental:Aquatic:Marine 3.0 +species Shewanella frigidimarina root:Environmental:Aquatic:Marine 3.0 phylum PAUC34f root:Environmental:Aquatic:Marine 2.0 phylum PAUC34f root:Engineered:Bioreactor 1.0 phylum PAUC34f root:Host-associated:Porifera 1.0 @@ -50383,6 +51618,7 @@ genus Swaminathania root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Swaminathania root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Swaminathania root:Host-associated:Plants:Rhizosphere:Soil 3.0 genus Swaminathania root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 +genus Swaminathania root:Host-associated:Insecta:Digestive system 1.0 genus Swaminathania root:Host-associated:Insecta 2.0 genus Swaminathania root:Engineered:Built environment 1.0 genus Swaminathania root:Engineered:Food production:Fermented vegetables 1.0 @@ -50415,6 +51651,7 @@ species Swaminathania mucosa root:Environmental:Terrestrial:Soil:Tropical rainfo species Swaminathania mucosa root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Swaminathania mucosa root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Swaminathania mucosa root:Host-associated:Plants:Rhizosphere:Soil 2.0 +species Swaminathania mucosa root:Host-associated:Insecta:Digestive system 1.0 species Pseudidiomarina homiensis root:Environmental:Aquatic:Marine 1.0 species Pseudidiomarina homiensis root:Environmental:Terrestrial:Soil:Desert 1.0 species Pseudoalteromonas ingrica root:Environmental:Aquatic:Marine 1.0 @@ -50461,7 +51698,7 @@ order Leptothecata root:Environmental:Aquatic:Marine:Sediment 2.0 order Leptothecata root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Leptothecata root:Environmental:Aquatic:Marine:Coastal 1.0 order Thecosomata root:Environmental:Aquatic:Marine 2.0 -order Siphonophorae root:Environmental:Aquatic:Marine 8.0 +order Siphonophorae root:Environmental:Aquatic:Marine 9.0 order Siphonophorae root:Environmental:Aquatic:Marine:Oceanic 3.0 order Siphonophorae root:Environmental:Aquatic:Marine:Sediment 4.0 order Siphonophorae root:Environmental:Aquatic 1.0 @@ -50477,6 +51714,7 @@ genus Eucheilota root:Environmental:Aquatic:Marine 1.0 genus Aspergillus root:Environmental:Aquatic:Marine 2.0 genus Aspergillus root:Host-associated:Plants 1.0 genus Aspergillus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Aspergillus root:Engineered:Lab enrichment 1.0 genus Aspergillus root:Engineered:Built environment 1.0 genus Decipisagitta root:Environmental:Aquatic:Marine 1.0 genus Creseis root:Environmental:Aquatic:Marine 2.0 @@ -50533,8 +51771,6 @@ genus Agromyces root:Environmental:Aquatic:Marine 3.0 genus Agromyces root:Host-associated:Plants:Rhizosphere 1.0 genus Agromyces root:Environmental:Aquatic:Sediment 1.0 genus Catenovulum root:Environmental:Aquatic:Marine 3.0 -species Nisaea denitrificans root:Environmental:Aquatic:Marine 4.0 -species Nisaea denitrificans root:Host-associated:Microbial:Bacteria 1.0 species Catenovulum agarivorans root:Environmental:Aquatic:Marine 2.0 species Catenovulum agarivorans root:Environmental:Aquatic:Marine:Brackish 1.0 species Nitratireductor indicus root:Environmental:Aquatic:Marine 1.0 @@ -50543,7 +51779,7 @@ genus Leifsonia root:Environmental:Aquatic:Marine 1.0 genus Leifsonia root:Engineered:Wastewater:Activated Sludge 2.0 genus Leifsonia root:Engineered:Wastewater 1.0 genus Leifsonia root:Environmental:Terrestrial:Soil:Contaminated 1.0 -species Methylophaga aminisulfidivorans root:Environmental:Aquatic:Marine 12.0 +species Methylophaga aminisulfidivorans root:Environmental:Aquatic:Marine 18.0 species Methylophaga aminisulfidivorans root:Environmental:Aquatic:Marine:Sediment 1.0 species Porphyrobacter dokdonensis root:Environmental:Aquatic:Marine 1.0 species Tistlia consotensis root:Environmental:Aquatic:Marine 1.0 @@ -50562,6 +51798,7 @@ species planctomycete MS1316 root:Environmental:Aquatic:Marine 1.0 species planctomycete MS1316 root:Environmental:Aquatic:Marine:Sediment 1.0 species planctomycete MS1316 root:Host-associated:Porifera 1.0 species planctomycete MS1316 root:Environmental:Aquatic:Marine:Coastal 1.0 +species planctomycete MS1316 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Marinobacter sp. Gp-1-1.1 root:Environmental:Aquatic:Marine 4.0 species Marinobacter sp. Gp-1-1.1 root:Host-associated:Porifera 2.0 species Marinobacter sp. Gp-1-1.1 root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -50589,7 +51826,7 @@ family Acholeplasmataceae root:Engineered:Biogas plant 2.0 family Acholeplasmataceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine 8.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Desulfosarcina root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 +genus Desulfosarcina root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 4.0 genus Desulfosarcina root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Desulfosarcina root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Desulfosarcina root:Environmental:Terrestrial:Soil:Contaminated 1.0 @@ -50597,12 +51834,12 @@ genus Desulfosarcina root:Environmental:Terrestrial:Soil 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Sediment 10.0 genus Desulfosarcina root:Environmental:Aquatic:Sediment 2.0 genus Desulfosarcina root:Environmental:Aquatic 1.0 +genus Desulfosarcina root:Engineered:Lab enrichment 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Desulfosarcina root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Desulfosarcina root:Engineered:Lab enrichment 1.0 genus Desulfosarcina root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Desulfosarcina root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Desulfosarcina root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -50637,7 +51874,7 @@ species Halodesulfovibrio spirochaetisodalis root:Engineered:Bioreactor:Continuo species Sunxiuqinia dokdonensis root:Environmental:Aquatic:Marine 2.0 species Sunxiuqinia dokdonensis root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Desulfosarcina cetonica root:Environmental:Aquatic:Marine 4.0 -species Desulfosarcina cetonica root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 +species Desulfosarcina cetonica root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 species Desulfosarcina cetonica root:Environmental:Aquatic:Estuary:Sediment 1.0 species Desulfosarcina cetonica root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Desulfosarcina cetonica root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -50711,6 +51948,7 @@ genus Archaeorhizomyces root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Platyhelminthes root:Environmental:Aquatic:Marine 12.0 phylum Platyhelminthes root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 phylum Platyhelminthes root:Environmental:Aquatic:Marine:Oceanic 1.0 +phylum Platyhelminthes root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 phylum Platyhelminthes root:Environmental:Aquatic:Estuary:Sediment 1.0 phylum Platyhelminthes root:Mixed 1.0 phylum Platyhelminthes root:Engineered:Food production:Fermented beverages 1.0 @@ -50763,6 +52001,7 @@ order Salpida root:Environmental:Aquatic:Marine 5.0 order Salpida root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Metridinidae root:Environmental:Aquatic:Marine 4.0 family Metridinidae root:Environmental:Aquatic:Marine:Oceanic 2.0 +family Metridinidae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Metridinidae root:Environmental:Aquatic:Marine:Sediment 1.0 family Metridinidae root:Environmental:Aquatic:Marine:Coastal 1.0 family Metridinidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 @@ -50810,9 +52049,10 @@ species Rhodococcus kyotonensis root:Environmental:Aquatic:Marine 3.0 kingdom Alveolata root:Environmental:Aquatic:Marine 1.0 kingdom Alveolata root:Environmental:Terrestrial:Soil:Forest soil 3.0 kingdom Alveolata root:Host-associated:Plants 3.0 -kingdom Alveolata root:Environmental:Terrestrial:Soil 1.0 +kingdom Alveolata root:Environmental:Terrestrial:Soil 2.0 kingdom Alveolata root:Host-associated:Plants:Rhizosphere:Soil 1.0 kingdom Alveolata root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Alveolata root:Host-associated:Fungi 1.0 kingdom Euglenozoa root:Environmental:Aquatic:Marine 1.0 kingdom Apusozoa root:Environmental:Aquatic:Marine 1.0 kingdom Apusozoa root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -50820,25 +52060,30 @@ kingdom Apusozoa root:Host-associated:Plants:Rhizosphere:Soil 1.0 kingdom Stramenopila root:Environmental:Aquatic:Marine 1.0 kingdom Stramenopila root:Environmental:Terrestrial:Soil:Forest soil 3.0 kingdom Stramenopila root:Host-associated:Plants 2.0 -kingdom Stramenopila root:Environmental:Terrestrial:Soil 1.0 +kingdom Stramenopila root:Environmental:Terrestrial:Soil 2.0 kingdom Stramenopila root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Stramenopila root:Host-associated:Fungi 1.0 kingdom Ichthyosporia root:Environmental:Aquatic:Marine 1.0 kingdom Ichthyosporia root:Environmental:Terrestrial:Soil:Forest soil 2.0 kingdom Ichthyosporia root:Host-associated:Plants 1.0 +kingdom Ichthyosporia root:Environmental:Terrestrial:Soil 1.0 kingdom Ichthyosporia root:Host-associated:Plants:Rhizosphere:Soil 1.0 kingdom Ichthyosporia root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 kingdom Ichthyosporia root:Host-associated:Fish:Digestive system:Intestine 1.0 +kingdom Ichthyosporia root:Host-associated:Fungi 1.0 kingdom Amoebozoa root:Environmental:Aquatic:Marine 1.0 kingdom Amoebozoa root:Environmental:Terrestrial:Soil:Forest soil 2.0 kingdom Amoebozoa root:Environmental:Terrestrial:Soil 1.0 kingdom Amoebozoa root:Host-associated:Plants:Rhizosphere:Soil 1.0 kingdom Amoebozoa root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Amoebozoa root:Host-associated:Fungi 1.0 phylum Craniata root:Environmental:Aquatic:Marine 1.0 phylum Craniata root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Euglenozoa phy Incertae sedis root:Environmental:Aquatic:Marine 1.0 phylum Dinophyta root:Environmental:Aquatic:Marine 1.0 phylum Apusozoa phy Incertae sedis root:Environmental:Aquatic:Marine 1.0 phylum Ichthyosporia phy Incertae sedis root:Environmental:Aquatic:Marine 1.0 +phylum Ichthyosporia phy Incertae sedis root:Environmental:Terrestrial:Soil 1.0 phylum Ichthyosporia phy Incertae sedis root:Host-associated:Fish:Digestive system:Intestine 1.0 class Actinopterygii root:Environmental:Aquatic:Marine 1.0 class Cestoda root:Environmental:Aquatic:Marine 1.0 @@ -50892,7 +52137,8 @@ order Cyclophyllidea root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Sebacinales root:Environmental:Aquatic:Marine 1.0 order Sebacinales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Sebacinales root:Host-associated:Plants 1.0 -order Sebacinales root:Host-associated:Plants:Root 1.0 +order Sebacinales root:Environmental:Terrestrial:Soil 1.0 +order Sebacinales root:Host-associated:Plants:Root 2.0 order Rotaliida root:Environmental:Aquatic:Marine 3.0 order Rotaliida root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 order Rotaliida root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -50976,17 +52222,17 @@ species Aureimarina marisflavi root:Environmental:Aquatic:Marine:Intertidal zone species Aureimarina marisflavi root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Aureimarina marisflavi root:Environmental:Aquatic:Marine:Coastal 4.0 species Aureimarina marisflavi root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -genus Robiginitalea root:Environmental:Aquatic:Marine 3.0 +genus Robiginitalea root:Environmental:Aquatic:Marine 4.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Robiginitalea root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Coastal:Sediment 5.0 genus Robiginitalea root:Environmental:Terrestrial:Soil 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Sediment 8.0 +genus Robiginitalea root:Engineered:Lab enrichment 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Coastal 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Robiginitalea root:Host-associated:Invertebrates:Echinodermata 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Robiginitalea root:Engineered:Lab enrichment 1.0 genus Robiginitalea root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 genus Robiginitalea root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 2.0 genus Robiginitalea root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 @@ -51002,6 +52248,7 @@ class [Spartobacteria] root:Environmental:Terrestrial:Soil:Contaminated 2.0 class [Spartobacteria] root:Host-associated:Plants:Rhizosphere 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil 21.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +class [Spartobacteria] root:Engineered:Lab enrichment 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Grasslands 4.0 class [Spartobacteria] root:Engineered:Solid waste:Composting 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Desert 3.0 @@ -51010,7 +52257,6 @@ class [Spartobacteria] root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Sand 1.0 class [Spartobacteria] root:Environmental:Aquatic:Freshwater:Groundwater 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -class [Spartobacteria] root:Engineered:Lab enrichment 1.0 class [Spartobacteria] root:Environmental:Terrestrial:Soil:Boreal forest 1.0 class [Spartobacteria] root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 class [Spartobacteria] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -51039,18 +52285,18 @@ species CandidatusSolibacter bradus root:Environmental:Aquatic:Marine 1.0 species CandidatusSolibacter bradus root:Environmental:Terrestrial:Soil:Agricultural 1.0 species CandidatusSolibacter bradus root:Environmental:Terrestrial:Soil 4.0 species CandidatusSolibacter bradus root:Environmental:Terrestrial:Soil:Wetlands 1.0 -species CandidatusSolibacter bradus root:Environmental:Aquatic:Freshwater 1.0 species CandidatusSolibacter bradus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species CandidatusSolibacter bradus root:Environmental:Aquatic:Freshwater 1.0 species CandidatusSolibacter bradus root:Environmental:Terrestrial:Volcanic 1.0 species CandidatusSolibacter bradus root:Host-associated:Protozoa 1.0 species Synechococcus antarctica root:Environmental:Aquatic:Marine 1.0 species Telmatospirillum siberiense root:Environmental:Aquatic:Marine 2.0 species Telmatospirillum siberiense root:Environmental:Terrestrial:Soil 1.0 +species Telmatospirillum siberiense root:Engineered:Lab enrichment 1.0 species Telmatospirillum siberiense root:Environmental:Aquatic:Freshwater 1.0 species Telmatospirillum siberiense root:Environmental:Aquatic:Marine:Coastal 1.0 species Telmatospirillum siberiense root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Telmatospirillum siberiense root:Engineered:Wastewater:Water and sludge 1.0 -species Telmatospirillum siberiense root:Engineered:Lab enrichment 1.0 species Verrucomicrobium debontii root:Environmental:Aquatic:Marine 1.0 species Verrucomicrobium debontii root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Verrucomicrobium debontii root:Host-associated:Plants 1.0 @@ -51083,13 +52329,93 @@ species Candidatus Thioglobus sp. REDSEA-S12 B1 root:Environmental:Aquatic:Marin species Candidatus Thioglobus sp. REDSEA-S12 B1 root:Host-associated:Porifera 1.0 species Candidatus Thioglobus sp. REDSEA-S12 B1 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Candidatus Thioglobus sp. REDSEA-S12 B1 root:Environmental:Aquatic:Marine:Pelagic 1.0 -species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine 8.0 +species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine 9.0 species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine:Oceanic 4.0 +species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine:Sediment 1.0 species Candidatus Thalassoarchaea mediterranii root:Host-associated:Porifera 1.0 species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine:Coastal 3.0 species Candidatus Thalassoarchaea mediterranii root:Environmental:Aquatic:Marine:Pelagic 1.0 species marine bacterium E401 root:Environmental:Aquatic:Marine 1.0 +phylum Discosea root:Environmental:Aquatic:Marine 1.0 +phylum Discosea root:Environmental:Terrestrial:Deep subsurface 1.0 +phylum Euglenozoa root:Environmental:Aquatic:Marine 3.0 +phylum Euglenozoa root:Environmental:Aquatic:Marine:Oceanic 1.0 +phylum Euglenozoa root:Environmental:Aquatic:Marine:Coastal 1.0 +phylum Euglenozoa root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +class Exobasidiomycetes root:Environmental:Aquatic:Marine 2.0 +class Exobasidiomycetes root:Host-associated:Plants 3.0 +class Exobasidiomycetes root:Environmental:Aquatic:Marine:Sediment 1.0 +class Exobasidiomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +class Exobasidiomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 +class Flabellinia root:Environmental:Aquatic:Marine 1.0 +order Georgefischeriales root:Environmental:Aquatic:Marine 1.0 +order Diplonemea root:Environmental:Aquatic:Marine 2.0 +order Diplonemea root:Environmental:Aquatic:Marine:Oceanic 1.0 +order Hypocreales root:Environmental:Aquatic:Marine 5.0 +order Hypocreales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 +order Hypocreales root:Host-associated:Plants 4.0 +order Hypocreales root:Engineered:Food production:Fermented beverages 1.0 +order Hypocreales root:Engineered:Wastewater 1.0 +order Hypocreales root:Host-associated:Plants:Rhizosphere 2.0 +order Hypocreales root:Environmental:Terrestrial:Soil 1.0 +order Hypocreales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Hypocreales root:Environmental:Aquatic:Sediment 1.0 +order Hypocreales root:Engineered:Lab enrichment 1.0 +order Hypocreales root:Environmental:Aquatic:Freshwater 1.0 +order Hypocreales root:Engineered:Lab enrichment:Defined media 1.0 +order Hypocreales root:Host-associated:Plants:Root 2.0 +order Hypocreales root:Engineered:Food production 1.0 +order Hypocreales root:Environmental:Terrestrial:Deep subsurface 3.0 +order Hypocreales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 +order Hypocreales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +order Hypocreales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +order Hypocreales root:Environmental:Terrestrial:Soil:Clay 1.0 +order Hypocreales root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Hypocreales root:Engineered:Bioremediation:Hydrocarbon 1.0 +order Alcyonacea root:Environmental:Aquatic:Marine 3.0 +order Alcyonacea root:Environmental:Aquatic:Marine:Sediment 1.0 +order Alcyonacea root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 +order Alcyonacea root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Collophidiidae root:Environmental:Aquatic:Marine 5.0 +family Collophidiidae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Collophidiidae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Gjaerumiaceae root:Environmental:Aquatic:Marine 1.0 +family Sphaerozoidae root:Environmental:Aquatic:Marine 8.0 +family Sphaerozoidae root:Environmental:Aquatic:Marine:Oceanic 2.0 +family Sphaerozoidae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Sphaerozoidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 +family Chromulinaceae root:Environmental:Aquatic:Marine 4.0 +family Chromulinaceae root:Environmental:Terrestrial:Soil 1.0 +family Chromulinaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 +family Chromulinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +family Actinommidae root:Environmental:Aquatic:Marine 3.0 +family Actinommidae root:Environmental:Aquatic:Marine:Oceanic 2.0 +family Actinommidae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Actinommidae root:Environmental:Aquatic 1.0 +family Actinommidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 +family Prorodontidae root:Environmental:Aquatic:Marine 2.0 +genus Gjaerumia root:Environmental:Aquatic:Marine 1.0 +genus Collophidium root:Environmental:Aquatic:Marine 6.0 +genus Collophidium root:Environmental:Aquatic:Marine:Oceanic 2.0 +genus Collophidium root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Platyamoeba root:Environmental:Aquatic:Marine 1.0 +genus Prorodon root:Environmental:Aquatic:Marine 2.0 +genus Pseudocohnilembus root:Environmental:Aquatic:Marine 1.0 +species Gjaerumia minor root:Environmental:Aquatic:Marine 2.0 +species Tilletiopsis washingtonensis root:Environmental:Aquatic:Marine 1.0 +species Tilletiopsis washingtonensis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Massisteria sp. diva root:Environmental:Aquatic:Marine 1.0 +species Massisteria sp. diva root:Environmental:Aquatic:Marine:Sediment 1.0 +species Ophiocordyceps sp. YLS-L. aud 01 root:Environmental:Aquatic:Marine 1.0 +species Juncigena adarca root:Environmental:Aquatic:Marine 1.0 +species Collozoum pelagicum root:Environmental:Aquatic:Marine 2.0 +species Brooksia rostrata root:Environmental:Aquatic:Marine 1.0 +species Brooksia rostrata root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Collophidium ovatum root:Environmental:Aquatic:Marine 3.0 +species Collophidium ovatum root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Siluania monomastiga root:Environmental:Aquatic:Marine 4.0 +species Siluania monomastiga root:Environmental:Aquatic:Marine:Oceanic 2.0 family MarinegroupII root:Environmental:Aquatic:Marine 7.0 family MarinegroupII root:Environmental:Aquatic:Marine:Oceanic 1.0 family MarinegroupII root:Environmental:Terrestrial:Soil 1.0 @@ -51137,6 +52463,7 @@ genus Cycloclasticus root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Cycloclasticus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Cycloclasticus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Cycloclasticus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 3.0 +genus Cycloclasticus root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Cycloclasticus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 6.0 genus Cycloclasticus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 genus Litoricola root:Environmental:Aquatic:Marine 5.0 @@ -51158,6 +52485,7 @@ species Nitrosopumilus maritimus root:Environmental:Aquatic:Marine:Oceanic:Abyss species Nitrosopumilus maritimus root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Nitrosopumilus maritimus root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species Alcanivoracaceae bacterium MOLA 95 root:Environmental:Aquatic:Marine 1.0 +species Alcanivoracaceae bacterium MOLA 95 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Alcanivoracaceae bacterium MOLA 95 root:Environmental:Aquatic:Marine:Sediment 1.0 species Luteibaculum oceani root:Environmental:Aquatic:Marine 1.0 species Luteibaculum oceani root:Environmental:Aquatic:Marine:Pelagic 1.0 @@ -51178,8 +52506,8 @@ genus Psychrilyobacter root:Environmental:Aquatic:Marine:Hydrothermal vents:Diff genus Saccharophagus root:Environmental:Aquatic:Marine 1.0 genus Saccharophagus root:Host-associated:Mollusca 2.0 species Lentisphaera araneosa root:Environmental:Aquatic:Marine 1.0 -species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Oceanic 6.0 -species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Oceanic 7.0 +species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Lentisphaera araneosa root:Environmental:Aquatic:Estuary 5.0 species Lentisphaera araneosa root:Environmental:Aquatic:Marine:Pelagic 2.0 @@ -51198,21 +52526,12 @@ species Psychrilyobacter atlanticus root:Environmental:Aquatic:Marine:Pelagic 2. species Psychrilyobacter atlanticus root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 species Psychrilyobacter atlanticus root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 species Psychrilyobacter atlanticus root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 -genus Oleibacter root:Environmental:Aquatic:Marine 10.0 +genus Oleibacter root:Environmental:Aquatic:Marine 12.0 genus Oleibacter root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Oleibacter root:Environmental:Aquatic 1.0 genus Oleibacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -genus Joostella root:Environmental:Aquatic:Marine 1.0 -species Joostella marina root:Environmental:Aquatic:Marine 3.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine 7.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oceanic 10.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Sediment 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root:Environmental:Aquatic:Marine:Pelagic 1.0 -species Gemmatimonadetes bacterium SCGC AAA240-J22 root 1.0 +genus Joostella root:Environmental:Aquatic:Marine 2.0 +species Joostella marina root:Environmental:Aquatic:Marine 7.0 species Methylophaga sulfidovorans root:Environmental:Aquatic:Marine 1.0 genus Novispirillum root:Environmental:Aquatic:Marine 2.0 genus Novispirillum root:Host-associated:Insecta 1.0 @@ -51221,7 +52540,7 @@ genus Robiginitomaculum root:Host-associated:Plants 2.0 genus Robiginitomaculum root:Host-associated:Algae:Red algae 2.0 genus Robiginitomaculum root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Robiginitomaculum root:Host-associated:Mollusca 1.0 -genus Owenweeksia root:Environmental:Aquatic:Marine 8.0 +genus Owenweeksia root:Environmental:Aquatic:Marine 9.0 genus Owenweeksia root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Owenweeksia root:Engineered:Bioreactor 1.0 genus Owenweeksia root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 @@ -51241,6 +52560,7 @@ genus Owenweeksia root:Engineered:Bioreactor:Continuous culture:Marine intertida genus Blattabacterium root:Environmental:Aquatic:Marine 1.0 genus Blattabacterium root:Host-associated:Insecta:Digestive system 2.0 genus Blattabacterium root:Environmental:Aquatic:Marine:Intertidal zone 1.0 +genus Blattabacterium root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Methanococcoides root:Environmental:Aquatic:Marine 2.0 genus Methanococcoides root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Methanococcoides root:Engineered:Bioreactor 1.0 @@ -51298,13 +52618,6 @@ class Pelagophyceae root:Environmental:Aquatic:Marine 16.0 class Pelagophyceae root:Environmental:Aquatic:Marine:Oceanic 6.0 class Pelagophyceae root:Environmental:Aquatic:Marine:Coastal 3.0 class Pelagophyceae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -order Haptorida root:Environmental:Aquatic:Marine 6.0 -order Haptorida root:Environmental:Aquatic:Marine:Oceanic 1.0 -order Haptorida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -order Haptorida root:Environmental:Aquatic:Marine:Sediment 2.0 -order Haptorida root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 -order Haptorida root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -order Haptorida root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 order Telonemida root:Environmental:Aquatic:Marine 18.0 order Telonemida root:Environmental:Aquatic:Marine:Oceanic 4.0 order Telonemida root:Environmental:Aquatic:Marine:Coastal 3.0 @@ -51323,8 +52636,13 @@ species Thalassomyces sp. JDS-2003 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Thalassomyces sp. JDS-2003 root:Environmental:Aquatic:Marine:Sediment 1.0 species Amoebophrya sp. ex Cochlodinium polykrikoides root:Environmental:Aquatic:Marine 2.0 species Amoebophrya sp. ex Cochlodinium polykrikoides root:Environmental:Aquatic:Marine:Oceanic 4.0 +species Amoebophrya sp. ex Cochlodinium polykrikoides root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Crustomastix stigmatica root:Environmental:Aquatic:Marine 2.0 species Amphora sp. CCMP2378 root:Environmental:Aquatic:Marine 2.0 +species Citreicella sp. SE45 root:Environmental:Aquatic:Marine 6.0 +species Citreicella sp. SE45 root:Environmental:Aquatic:Marine:Brackish 1.0 +species Henriciella marina root:Environmental:Aquatic:Marine 3.0 +species Maribius pelagius root:Environmental:Aquatic:Marine 3.0 order MSBL9 root:Environmental:Aquatic:Marine 2.0 order MSBL9 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order MSBL9 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -51346,12 +52664,12 @@ order Cenarchaeales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order Cenarchaeales root:Host-associated:Porifera 7.0 order Cenarchaeales root:Environmental:Terrestrial:Soil:Wetlands 2.0 order Cenarchaeales root:Environmental:Terrestrial:Soil:Grasslands 1.0 +order Cenarchaeales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Cenarchaeales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 order Cenarchaeales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 order Cenarchaeales root:Environmental:Aquatic:Marine:Coastal 4.0 order Cenarchaeales root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order Cenarchaeales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -order Cenarchaeales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Cenarchaeales root:Environmental:Aquatic:Estuary 1.0 order Cenarchaeales root:Host-associated:Animal:Digestive system 1.0 order Cenarchaeales root:Host-associated:Mollusca 1.0 @@ -51396,6 +52714,7 @@ genus Desulfococcus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Desulfococcus root:Environmental:Terrestrial:Soil 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Sediment 11.0 genus Desulfococcus root:Environmental:Aquatic:Sediment 1.0 +genus Desulfococcus root:Engineered:Lab enrichment 1.0 genus Desulfococcus root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Coastal 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Cold seeps 5.0 @@ -51405,7 +52724,6 @@ genus Desulfococcus root:Engineered:Bioreactor:Continuous culture 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Desulfococcus root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -genus Desulfococcus root:Engineered:Lab enrichment 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Desulfococcus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 genus Desulfococcus root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 @@ -51419,8 +52737,8 @@ genus Sorangium root:Environmental:Terrestrial:Soil 5.0 genus Sorangium root:Environmental:Aquatic 1.0 genus Sorangium root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus Sorangium root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Sorangium root:Engineered:Solid waste:Composting 1.0 genus Sorangium root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Sorangium root:Engineered:Solid waste:Composting 1.0 genus Sorangium root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Sorangium root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Sorangium root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 @@ -51434,8 +52752,8 @@ genus Litorilinea root:Environmental:Terrestrial:Soil 2.0 genus Litorilinea root:Environmental:Aquatic:Marine:Sediment 1.0 genus Litorilinea root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Litorilinea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 -genus Litorilinea root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Litorilinea root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +genus Litorilinea root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Thiohalorhabdus root:Environmental:Aquatic:Marine 1.0 genus Thiohalorhabdus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Thiohalorhabdus root:Environmental:Terrestrial:Soil 1.0 @@ -51452,14 +52770,16 @@ species Desulfococcus alkaliphilus root:Engineered:Bioreactor:Continuous culture species Sorangium cellulosum root:Environmental:Aquatic:Marine 2.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Agricultural 6.0 +species Sorangium cellulosum root:Engineered:Wastewater:Activated Sludge 1.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Permafrost 1.0 species Sorangium cellulosum root:Mixed 2.0 -species Sorangium cellulosum root:Host-associated:Plants:Rhizosphere 10.0 +species Sorangium cellulosum root:Host-associated:Plants:Rhizosphere 11.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil 12.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 -species Sorangium cellulosum root:Engineered:Solid waste:Composting 1.0 species Sorangium cellulosum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sorangium cellulosum root:Engineered:Solid waste:Composting 1.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 +species Sorangium cellulosum root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Sorangium cellulosum root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 species Nostocoida limicola root:Environmental:Aquatic:Marine 1.0 species Thermogymnomonas zhilinae root:Environmental:Aquatic:Marine 1.0 @@ -51470,8 +52790,8 @@ species Litorilinea aerophila root:Environmental:Terrestrial:Soil 2.0 species Litorilinea aerophila root:Environmental:Aquatic:Marine:Sediment 1.0 species Litorilinea aerophila root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Litorilinea aerophila root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 -species Litorilinea aerophila root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Litorilinea aerophila root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Litorilinea aerophila root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Thiohalorhabdus flexibilis root:Environmental:Aquatic:Marine 1.0 species Thiohalorhabdus flexibilis root:Environmental:Terrestrial:Soil 1.0 species Kuenenia stuttgartiensis root:Environmental:Aquatic:Marine 3.0 @@ -51516,11 +52836,12 @@ species Simkania negevensis root:Environmental:Aquatic:Marine:Oceanic:Sediment 1 species Simkania negevensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Simkania negevensis root:Host-associated:Porifera 2.0 species Simkania negevensis root:Environmental:Aquatic:Marine:Coastal 1.0 +species Simkania negevensis root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Simkania negevensis root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 species Simkania negevensis root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 family Duboscquellidae root:Environmental:Aquatic:Marine 2.0 family Duboscquellidae root:Environmental:Aquatic:Marine:Oceanic 2.0 -family Cafeteriaceae root:Environmental:Aquatic:Marine 5.0 +family Cafeteriaceae root:Environmental:Aquatic:Marine 6.0 family Cafeteriaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Cafeteriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Cafeteriaceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 @@ -51529,6 +52850,7 @@ family Sporidiobolaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Sporidiobolaceae root:Engineered:Bioreactor 1.0 family Sporidiobolaceae root:Engineered:Food production:Fermented beverages 1.0 family Sporidiobolaceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Sporidiobolaceae root:Engineered:Lab enrichment 1.0 family Sporidiobolaceae root:Host-associated:Human:Digestive system 1.0 family Sporidiobolaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Sporidiobolaceae root:Engineered:Built environment 2.0 @@ -51549,6 +52871,7 @@ genus Rhodotorula root:Environmental:Aquatic:Marine 1.0 genus Rhodotorula root:Engineered:Bioreactor 2.0 genus Rhodotorula root:Engineered:Food production:Fermented beverages 1.0 genus Rhodotorula root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Rhodotorula root:Engineered:Lab enrichment 1.0 genus Rhodotorula root:Host-associated:Human:Digestive system 1.0 genus Rhodotorula root:Environmental:Aquatic:Marine:Brackish 1.0 genus Rhodotorula root:Engineered:Built environment 2.0 @@ -51566,7 +52889,7 @@ species Teleaulax minuta root:Environmental:Aquatic:Marine 2.0 species Teleaulax minuta root:Environmental:Aquatic:Marine:Oceanic 1.0 species Teleaulax minuta root:Environmental:Aquatic:Marine:Marginal Sea 2.0 species Rhizidiomyces apophysatus root:Environmental:Aquatic:Marine 2.0 -phylum Bryozoa root:Environmental:Aquatic:Marine 4.0 +phylum Bryozoa root:Environmental:Aquatic:Marine 5.0 phylum Bryozoa root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Bryozoa root:Host-associated:Mammals 1.0 phylum Bryozoa root:Environmental:Aquatic 1.0 @@ -51585,6 +52908,7 @@ family Rivulariaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment family Rivulariaceae root:Host-associated:Algae:Brown Algae 1.0 genus Leptolyngbya root:Environmental:Aquatic:Marine 1.0 genus Leptolyngbya root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +genus Leptolyngbya root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Leptolyngbya root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Leptolyngbya root:Mixed 1.0 genus Leptolyngbya root:Engineered:Wastewater 1.0 @@ -51592,11 +52916,11 @@ genus Leptolyngbya root:Environmental:Terrestrial:Soil 4.0 genus Leptolyngbya root:Environmental:Aquatic:Marine:Sediment 1.0 genus Leptolyngbya root:Environmental:Aquatic 1.0 genus Leptolyngbya root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Leptolyngbya root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Leptolyngbya root:Environmental:Aquatic:Marine:Coastal 1.0 genus Leptolyngbya root:Engineered:Solid waste:Composting 1.0 genus Leptolyngbya root:Environmental:Terrestrial:Soil:Desert 1.0 genus Leptolyngbya root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -genus Leptolyngbya root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Leptolyngbya root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 genus Leptolyngbya root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Leptolyngbya root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -51647,7 +52971,7 @@ genus Luminiphilus root:Environmental:Aquatic:Marine:Coastal 3.0 genus Luminiphilus root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Luminiphilus root:Environmental:Aquatic:Marine:Pelagic 1.0 genus Luminiphilus root:Host-associated:Algae:Brown Algae 1.0 -species Colwellia sp. MT41 root:Environmental:Aquatic:Marine 2.0 +species Colwellia sp. MT41 root:Environmental:Aquatic:Marine 3.0 species Colwellia sp. MT41 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Thalassobium sp. R2A62 root:Environmental:Aquatic:Marine 1.0 species Thalassobium sp. R2A62 root:Host-associated:Porifera 1.0 @@ -51664,6 +52988,7 @@ genus Oleispira root:Engineered:Biotransformation:Microbial enhanced oil recover genus Oleispira root:Host-associated:Mollusca 1.0 genus Oleispira root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 5.0 genus Oleispira root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Oleispira root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Oleispira root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 4.0 genus Oleispira root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Oleispira root:Environmental:Aquatic:Aquaculture 1.0 @@ -51708,7 +53033,7 @@ genus Massisteria root:Environmental:Aquatic:Marine:Sediment 1.0 genus Thermoflexus root:Environmental:Aquatic:Marine 2.0 genus Thermoflexus root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Thermoflexus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -genus Thermoflexus root:Environmental:Aquatic:Marine:Sediment 12.0 +genus Thermoflexus root:Environmental:Aquatic:Marine:Sediment 13.0 genus Thermoflexus root:Environmental:Aquatic 1.0 genus Thermoflexus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Thermoflexus root:Environmental:Aquatic:Marine:Cold seeps 2.0 @@ -51731,6 +53056,10 @@ species bacterium enrichment culture clone E23 root:Environmental:Aquatic:Non-ma species Liposcelis bostrychophila root:Environmental:Aquatic:Marine 1.0 species bacterium thiotrophic symbiont of Idas sp. root:Environmental:Aquatic:Marine 1.0 species bacterium enrichment culture clone AOM-SR-B28 root:Environmental:Aquatic:Marine 1.0 +species Pseudohongiella spirulinae root:Environmental:Aquatic:Marine 2.0 +species Pseudohongiella spirulinae root:Environmental:Aquatic:Marine:Coastal 1.0 +species Zunongwangia profunda root:Environmental:Aquatic:Marine 4.0 +species Zunongwangia profunda root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 family Bacteriovoracaceae root:Environmental:Aquatic:Marine 5.0 family Bacteriovoracaceae root:Environmental:Aquatic:Marine:Oceanic 3.0 family Bacteriovoracaceae root:Engineered:Food production:Fermented beverages 1.0 @@ -51744,7 +53073,7 @@ family Bacteriovoracaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Aureococcus root:Environmental:Aquatic:Marine 4.0 genus Aureococcus root:Environmental:Aquatic:Marine:Oceanic 1.0 species Gammaproteobacteria bacterium REDSEA-S03 B5 root:Environmental:Aquatic:Marine 4.0 -species Gammaproteobacteria bacterium REDSEA-S03 B5 root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Gammaproteobacteria bacterium REDSEA-S03 B5 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Gammaproteobacteria bacterium REDSEA-S03 B5 root:Mixed 1.0 species Gammaproteobacteria bacterium REDSEA-S03 B5 root:Environmental:Aquatic:Marine:Sediment 1.0 species alpha proteobacterium HIMB59 root:Environmental:Aquatic:Marine 4.0 @@ -51767,7 +53096,9 @@ class Chytridiomycetes root:Host-associated:Plants:Root 1.0 class Chytridiomycetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Chytridiomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Chytridiomycetes root:Environmental:Aquatic:Freshwater:Ice 1.0 +class Chytridiomycetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Chytridiomycetes root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +class Chytridiomycetes root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 order Coccidiniales root:Environmental:Aquatic:Marine 2.0 order Coccidiniales root:Environmental:Aquatic:Marine:Oceanic 1.0 order Coccidiniales root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -51786,6 +53117,7 @@ family Salpingoecidae root:Environmental:Aquatic:Marine:Intertidal zone:Coral re family Salpingoecidae root:Environmental:Aquatic:Marine:Coastal 3.0 family Salpingoecidae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Salpingoecidae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +family Salpingoecidae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Acanthoecidae root:Environmental:Aquatic:Marine 1.0 genus Haplozoon root:Environmental:Aquatic:Marine 2.0 genus Haplozoon root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -51796,6 +53128,7 @@ genus Bicosta root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Bicosta root:Environmental:Aquatic:Marine:Coastal 2.0 species Pleurasiga minima root:Environmental:Aquatic:Marine 3.0 species Pleurasiga minima root:Environmental:Aquatic:Marine:Oceanic 3.0 +species Pleurasiga minima root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Pleurasiga minima root:Environmental:Aquatic:Marine:Coastal 2.0 species Nitrospina sp. enrichment culture clone Cb12 root:Environmental:Aquatic:Marine 2.0 species Nitrospina sp. enrichment culture clone Cb12 root:Host-associated:Fish 1.0 @@ -51814,7 +53147,7 @@ species Salinirepens amamiensis root:Environmental:Aquatic:Marine:Oceanic 2.0 species Salinirepens amamiensis root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Salinirepens amamiensis root:Environmental:Aquatic:Marine:Coastal 4.0 species Salinirepens amamiensis root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 -family Shewanellaceae root:Environmental:Aquatic:Marine 11.0 +family Shewanellaceae root:Environmental:Aquatic:Marine 12.0 family Shewanellaceae root:Host-associated:Fish 1.0 family Shewanellaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Shewanellaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -51844,6 +53177,7 @@ family Shewanellaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Shewanellaceae root:Engineered:Modeled 2.0 family Shewanellaceae root:Host-associated 1.0 family Shewanellaceae root:Host-associated:Mollusca 1.0 +family Shewanellaceae root:Host-associated:Fish:Digestive system 1.0 family Shewanellaceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Shewanellaceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Shewanellaceae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 @@ -51911,6 +53245,7 @@ species Oleispira antarctica root:Environmental:Aquatic:Marine:Coastal 1.0 species Oleispira antarctica root:Environmental:Aquatic:Estuary 1.0 species Oleispira antarctica root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 species Oleispira antarctica root:Environmental:Aquatic:Marine:Pelagic 1.0 +species Oleispira antarctica root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Oleispira antarctica root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Oleispira antarctica root:Environmental:Aquatic:Aquaculture 1.0 species Planctomycetaceae bacterium LX124 root:Environmental:Aquatic:Marine 2.0 @@ -51923,6 +53258,7 @@ species Planctomycetaceae bacterium LX124 root:Environmental:Aquatic:Sediment 1. species Planctomycetaceae bacterium LX124 root:Engineered:Lab enrichment:Defined media 2.0 species Planctomycetaceae bacterium LX124 root:Environmental:Terrestrial:Deep subsurface 1.0 species Planctomycetaceae bacterium LX124 root:Environmental:Terrestrial:Soil:Crop 1.0 +species Planctomycetaceae bacterium LX124 root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Planctomycetaceae bacterium LX124 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 species Moritella sp. BSw20747 root:Environmental:Aquatic:Marine 1.0 species Moritella sp. JXH-94 root:Environmental:Aquatic:Marine 1.0 @@ -51943,6 +53279,7 @@ family Caldicoprobacteraceae root:Environmental:Aquatic:Thermal springs 1.0 family Caldicoprobacteraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Caldicoprobacteraceae root:Engineered:Bioreactor:Continuous culture 1.0 family Caldicoprobacteraceae root:Engineered:Wastewater:Water and sludge 1.0 +family Caldicoprobacteraceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 family Caldicoprobacteraceae root:Engineered:Biogas plant 2.0 family Caldicoprobacteraceae root:Engineered:Solid waste:Composting:Bioreactor 1.0 family Halobacteroidaceae root:Environmental:Aquatic:Marine 1.0 @@ -51962,6 +53299,7 @@ genus Caldicoprobacter root:Environmental:Aquatic:Marine:Oil-contaminated sedime genus Caldicoprobacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Caldicoprobacter root:Engineered:Wastewater:Water and sludge 1.0 genus Caldicoprobacter root:Host-associated:Birds:Digestive system:Digestive tube 1.0 +genus Caldicoprobacter root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Caldicoprobacter root:Engineered:Biogas plant 1.0 genus Caldicoprobacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Caldicoprobacter root:Engineered:Solid waste:Composting:Bioreactor 1.0 @@ -51969,6 +53307,7 @@ genus Fuchsiella root:Environmental:Aquatic:Marine 1.0 genus Halocella root:Environmental:Aquatic:Marine 1.0 genus Halocella root:Engineered:Bioreactor 1.0 genus Halocella root:Engineered:Bioreactor:Continuous culture 1.0 +genus Halocella root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Halocella root:Engineered:Biogas plant 2.0 genus Lysinimicrobium root:Environmental:Aquatic:Marine 3.0 genus Sporobacter root:Environmental:Aquatic:Marine 3.0 @@ -51979,26 +53318,6 @@ species Thermotogales bacterium Thermo 01 root:Environmental:Aquatic:Marine 1.0 species Thermotogales bacterium Thermo 01 root:Engineered:Lab enrichment 1.0 class Katablepharidophyta root:Environmental:Aquatic:Marine 6.0 class Katablepharidophyta root:Environmental:Aquatic:Marine:Coastal 1.0 -order Hypocreales root:Environmental:Aquatic:Marine 4.0 -order Hypocreales root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 -order Hypocreales root:Host-associated:Plants 4.0 -order Hypocreales root:Engineered:Food production:Fermented beverages 1.0 -order Hypocreales root:Engineered:Wastewater 1.0 -order Hypocreales root:Host-associated:Plants:Rhizosphere 2.0 -order Hypocreales root:Environmental:Terrestrial:Soil 1.0 -order Hypocreales root:Environmental:Aquatic:Marine:Sediment 2.0 -order Hypocreales root:Environmental:Aquatic:Sediment 1.0 -order Hypocreales root:Environmental:Aquatic:Freshwater 1.0 -order Hypocreales root:Engineered:Lab enrichment:Defined media 1.0 -order Hypocreales root:Host-associated:Plants:Root 2.0 -order Hypocreales root:Engineered:Food production 1.0 -order Hypocreales root:Environmental:Terrestrial:Deep subsurface 3.0 -order Hypocreales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -order Hypocreales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -order Hypocreales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -order Hypocreales root:Environmental:Terrestrial:Soil:Clay 1.0 -order Hypocreales root:Host-associated:Fish:Digestive system:Intestine 1.0 -order Hypocreales root:Engineered:Bioremediation:Hydrocarbon 1.0 order Philasterida root:Environmental:Aquatic:Marine 1.0 order Philasterida root:Environmental:Terrestrial:Soil 1.0 order Philasterida root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 @@ -52007,6 +53326,8 @@ order Capnodiales root:Host-associated:Plants 9.0 order Capnodiales root:Engineered:Bioreactor 1.0 order Capnodiales root:Environmental:Terrestrial:Soil:Contaminated 1.0 order Capnodiales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Capnodiales root:Engineered:Lab enrichment 1.0 +order Capnodiales root:Host-associated:Fungi 1.0 order Capnodiales root:Host-associated:Human:Circulatory system 1.0 family Dipodascaceae root:Environmental:Aquatic:Marine 1.0 family Dipodascaceae root:Host-associated:Human 1.0 @@ -52043,6 +53364,7 @@ species Sinorickettsia chlamys root:Host-associated:Invertebrates:Cnidaria:Coral species Sinorickettsia chlamys root:Environmental:Aquatic:Aquaculture 1.0 phylum Candidatus Uhrbacteria root:Environmental:Aquatic:Marine 2.0 phylum Candidatus Magasanikbacteria root:Environmental:Aquatic:Marine 1.0 +phylum Candidatus Magasanikbacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Candidatus Magasanikbacteria root:Engineered:Wastewater:Water and sludge 1.0 phylum Candidatus Omnitrophica root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Omnitrophica root:Engineered:Wastewater:Activated Sludge 2.0 @@ -52059,18 +53381,16 @@ genus Albimonas root:Environmental:Aquatic:Marine 1.0 genus Albimonas root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Albimonas root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Albimonas root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 -species Oceanicaulis alexandrii root:Environmental:Aquatic:Marine 1.0 -species Oceanicaulis alexandrii root:Environmental:Terrestrial:Soil:Sand 1.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine 1.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Estuary:Sediment 1.0 -species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 +species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Sediment 3.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Estuary 1.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Candidatus Scalindua brodae root:Environmental:Aquatic:Marine:Pelagic 1.0 species Desulfobacula toluolica root:Environmental:Aquatic:Marine 1.0 -species Desulfobacula toluolica root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Desulfobacula toluolica root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Desulfobacula toluolica root:Environmental:Aquatic:Marine:Sediment 2.0 species Desulfobacula toluolica root:Environmental:Aquatic:Estuary 4.0 species Albimonas pacifica root:Environmental:Aquatic:Marine 4.0 @@ -52078,7 +53398,7 @@ species Albimonas pacifica root:Environmental:Aquatic:Marine:Oceanic 4.0 species Albimonas pacifica root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 species Albimonas pacifica root:Environmental:Aquatic:Marine:Brackish 1.0 species Bathymodiolus azoricus thioautotrophic gill symbiont root:Environmental:Aquatic:Marine 1.0 -species Henriciella marina root:Environmental:Aquatic:Marine 2.0 +species Bathymodiolus azoricus thioautotrophic gill symbiont root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Polycladida root:Environmental:Aquatic:Marine 1.0 order Polycladida root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Stylochus root:Environmental:Aquatic:Marine 1.0 @@ -52099,15 +53419,19 @@ species Heterochaerus blumi root:Environmental:Aquatic:Marine:Sediment 1.0 species Katablepharis japonica root:Environmental:Aquatic:Marine 1.0 species Marphysa sanguinea root:Environmental:Aquatic:Marine 1.0 species Marphysa sanguinea root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 +class Candidatus Poseidoniia root:Environmental:Aquatic:Marine 3.0 +class Candidatus Poseidoniia root:Environmental:Aquatic:Marine:Oceanic 1.0 family Oscillatoriaceae root:Environmental:Aquatic:Marine 1.0 family Oscillatoriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Oscillatoriaceae root:Mixed 1.0 family Oscillatoriaceae root:Environmental:Aquatic 1.0 family Oscillatoriaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Oscillatoriaceae root:Engineered:Lab enrichment:Defined media 8.0 +family Oscillatoriaceae root:Engineered:Bioreactor:Continuous culture 1.0 family Oscillatoriaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 genus Acetivibrio root:Environmental:Aquatic:Marine 2.0 genus Acetivibrio root:Engineered:Wastewater:Activated Sludge 1.0 +genus Acetivibrio root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Acetivibrio root:Engineered:Biogas plant:Wet fermentation 1.0 genus Desulfatitalea root:Environmental:Aquatic:Marine 2.0 genus Desulfatitalea root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -52133,16 +53457,31 @@ genus Desulfotignum root:Engineered 1.0 genus Desulfotignum root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Acetivibrio cellulolyticus root:Environmental:Aquatic:Marine 2.0 species Acetivibrio cellulolyticus root:Engineered:Wastewater:Activated Sludge 2.0 +genus Arenibacter root:Environmental:Aquatic:Marine 1.0 +genus Arenibacter root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Arenibacter root:Engineered:Solid waste:Composting 1.0 +genus Maribacter root:Environmental:Aquatic:Marine 2.0 +genus Maribacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +genus Maribacter root:Host-associated:Plants 1.0 +genus Maribacter root:Environmental:Aquatic:Estuary:Sediment 1.0 +genus Maribacter root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 +genus Maribacter root:Host-associated:Algae:Red algae 4.0 +genus Maribacter root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +genus Maribacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 +species Sphingorhabdus sp. M41 root:Environmental:Aquatic:Marine 2.0 +species Maricaulis salignorans root:Environmental:Aquatic:Marine 1.0 +species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine 1.0 +species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Sneathiella glossodoripedis root:Engineered:Wastewater:Industrial wastewater 1.0 +species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Brackish 1.0 +species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 +species Cyclobacterium amurskyense root:Environmental:Aquatic:Marine 1.0 order Peridiniales root:Environmental:Aquatic:Marine 11.0 order Peridiniales root:Environmental:Aquatic:Marine:Oceanic 3.0 order Peridiniales root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Peridiniales root:Environmental:Aquatic:Marine:Coastal 3.0 order Peridiniales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Peridiniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -family Sphaerozoidae root:Environmental:Aquatic:Marine 7.0 -family Sphaerozoidae root:Environmental:Aquatic:Marine:Oceanic 2.0 -family Sphaerozoidae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Sphaerozoidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 species Diplonemida sp. 1sb RG-2016 root:Environmental:Aquatic:Marine 3.0 species Diplonemida sp. 1sb RG-2016 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Misophriopsis sp. New Caledonia-RJH-2004 root:Environmental:Aquatic:Marine 1.0 @@ -52171,23 +53510,25 @@ species Flavobacteriaceae bacterium MAR 2010 10 root:Environmental:Aquatic:Marin species Flavobacteriaceae bacterium MAR 2010 10 root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Candidatus Sungbacteria root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Sungbacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 +phylum Candidatus Sungbacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Candidatus Sungbacteria root:Engineered:Wastewater:Water and sludge 1.0 +phylum Candidatus Sungbacteria root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 family Haliscomenobacteraceae root:Environmental:Aquatic:Marine 3.0 family Haliscomenobacteraceae root:Engineered:Wastewater:Activated Sludge 1.0 family Haliscomenobacteraceae root:Engineered:Wastewater 1.0 family Haliscomenobacteraceae root:Host-associated:Algae:Red algae 1.0 family Haliscomenobacteraceae root:Engineered:Lab enrichment:Defined media:Marine media 1.0 family Haliscomenobacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -family Wenzhouxiangellaceae root:Environmental:Aquatic:Marine 1.0 +family Wenzhouxiangellaceae root:Environmental:Aquatic:Marine 2.0 family Wenzhouxiangellaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Wenzhouxiangellaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -genus Wenzhouxiangella root:Environmental:Aquatic:Marine 2.0 +genus Wenzhouxiangella root:Environmental:Aquatic:Marine 3.0 genus Wenzhouxiangella root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Wenzhouxiangella root:Environmental:Aquatic:Marine:Sediment 2.0 genus Wenzhouxiangella root:Environmental:Aquatic 1.0 genus Wenzhouxiangella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 genus Wenzhouxiangella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -genus Phaeodactylibacter root:Environmental:Aquatic:Marine 3.0 +genus Phaeodactylibacter root:Environmental:Aquatic:Marine 4.0 genus Phaeodactylibacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Phaeodactylibacter root:Engineered:Wastewater 1.0 genus Phaeodactylibacter root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -52202,11 +53543,11 @@ genus Gracilimonas root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Gracilimonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Gracilimonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Gracilimonas root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 -genus Pseudohaliea root:Environmental:Aquatic:Marine 1.0 +genus Pseudohaliea root:Environmental:Aquatic:Marine 2.0 genus Pseudohaliea root:Mixed 1.0 genus Pseudohaliea root:Environmental:Aquatic:Sediment 1.0 genus Pseudohaliea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -species Phaeodactylibacter xiamenensis root:Environmental:Aquatic:Marine 4.0 +species Phaeodactylibacter xiamenensis root:Environmental:Aquatic:Marine 5.0 species Phaeodactylibacter xiamenensis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Phaeodactylibacter xiamenensis root:Environmental:Aquatic:Marine:Brackish 1.0 species Phaeodactylibacter xiamenensis root:Engineered 1.0 @@ -52219,12 +53560,10 @@ species Coraliomargarita akajimensis root:Environmental:Aquatic:Marine:Intertida species Gracilimonas tropica root:Environmental:Aquatic:Marine 1.0 species Gracilimonas tropica root:Environmental:Aquatic:Marine:Sediment 1.0 species Gracilimonas tropica root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -genus Mesonia root:Environmental:Aquatic:Marine 4.0 +genus Mesonia root:Environmental:Aquatic:Marine 5.0 genus Mesonia root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Mesonia root:Engineered:Lab enrichment:Defined media:Marine media 1.0 -species Mesonia phycicola root:Environmental:Aquatic:Marine 6.0 -species Idiomarina loihiensis root:Environmental:Aquatic:Marine 3.0 -species Idiomarina loihiensis root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +species Mesonia phycicola root:Environmental:Aquatic:Marine 7.0 family Thiotrichaceae root:Environmental:Aquatic:Marine 15.0 family Thiotrichaceae root:Host-associated:Fish 3.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 @@ -52232,7 +53571,7 @@ family Thiotrichaceae root:Environmental:Aquatic:Marine:Oceanic 3.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 family Thiotrichaceae root:Host-associated:Plants 3.0 family Thiotrichaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 -family Thiotrichaceae root:Engineered:Wastewater:Activated Sludge 1.0 +family Thiotrichaceae root:Engineered:Wastewater:Activated Sludge 2.0 family Thiotrichaceae root:Mixed 1.0 family Thiotrichaceae root:Engineered:Wastewater 2.0 family Thiotrichaceae root:Host-associated:Plants:Rhizosphere 2.0 @@ -52241,6 +53580,7 @@ family Thiotrichaceae root:Environmental:Terrestrial:Soil 2.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Sediment 14.0 family Thiotrichaceae root:Environmental:Aquatic:Sediment 2.0 family Thiotrichaceae root:Engineered:Biogas plant:Wet fermentation 1.0 +family Thiotrichaceae root:Engineered:Lab enrichment 1.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 3.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Coastal 3.0 @@ -52258,9 +53598,8 @@ family Thiotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Thiotrichaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Thiotrichaceae root:Engineered:Wastewater:Water and sludge 2.0 -family Thiotrichaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Thiotrichaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Thiotrichaceae root:Engineered:Lab enrichment 1.0 +family Thiotrichaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Thiotrichaceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Thiotrichaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Thiotrichaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 @@ -52274,6 +53613,7 @@ family Thiotrichaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffu family Thiotrichaceae root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 genus Magnetospira root:Environmental:Aquatic:Marine 4.0 genus Magnetospira root:Environmental:Aquatic:Marine:Oceanic 3.0 +genus Magnetospira root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Magnetospira root:Environmental:Aquatic:Marine:Sediment 2.0 genus Magnetospira root:Host-associated:Porifera 1.0 genus Magnetospira root:Environmental:Aquatic:Marine:Marginal Sea 1.0 @@ -52286,6 +53626,7 @@ genus Cocleimonas root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Cocleimonas root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 genus Cocleimonas root:Host-associated:Algae 1.0 species Thiothrix fructosivorans root:Environmental:Aquatic:Marine 1.0 +species Leeuwenhoekiella palythoae root:Environmental:Aquatic:Marine 6.0 genus Sediminicola root:Environmental:Aquatic:Marine 2.0 genus Sediminicola root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus Rhodoferax root:Environmental:Aquatic:Marine 1.0 @@ -52353,8 +53694,8 @@ family Sneathiellaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Sneathiellaceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 species Spirosoma spitsbergense root:Environmental:Aquatic:Marine 1.0 species Spirosoma sp. UYEF35 root:Environmental:Aquatic:Marine 1.0 -genus Cafeteria root:Environmental:Aquatic:Marine 5.0 -genus Sphingopyxis root:Environmental:Aquatic:Marine 1.0 +genus Cafeteria root:Environmental:Aquatic:Marine 6.0 +genus Sphingopyxis root:Environmental:Aquatic:Marine 2.0 genus Sphingopyxis root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Sphingopyxis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Sphingopyxis root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -52370,12 +53711,12 @@ genus Sphingopyxis root:Host-associated:Plants:Rhizosphere 1.0 genus Sphingopyxis root:Environmental:Terrestrial:Soil 9.0 genus Sphingopyxis root:Environmental:Aquatic:Marine:Sediment 1.0 genus Sphingopyxis root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Sphingopyxis root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Sphingopyxis root:Environmental:Aquatic:Freshwater 1.0 genus Sphingopyxis root:Engineered:Solid waste:Composting 2.0 genus Sphingopyxis root:Environmental:Terrestrial:Soil:Desert 1.0 genus Sphingopyxis root:Host-associated:Algae:Red algae 1.0 genus Sphingopyxis root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Sphingopyxis root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Sphingopyxis root:Environmental:Aquatic:Estuary 1.0 genus Sphingopyxis root:Engineered:Wastewater:Industrial wastewater 1.0 genus Sphingopyxis root:Host-associated:Insecta:Digestive system 1.0 @@ -52384,7 +53725,8 @@ genus Sphingopyxis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Sphingopyxis root:Engineered:Wastewater:Water and sludge 2.0 genus Sphingopyxis root:Engineered:Built environment 1.0 genus Sphingopyxis root:Host-associated:Human:Circulatory system 1.0 -species Cafeteria roenbergensis root:Environmental:Aquatic:Marine 9.0 +genus Sphingopyxis root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Cafeteria roenbergensis root:Environmental:Aquatic:Marine 11.0 species Pseudomonas aestusnigri root:Environmental:Aquatic:Marine 1.0 species Marinobacter lutaoensis root:Environmental:Aquatic:Marine 1.0 genus Rhizosolenia root:Environmental:Aquatic:Marine 2.0 @@ -52442,12 +53784,7 @@ species Cryothecomonas sp. APCC MC5-1Cryo root:Environmental:Aquatic:Marine:Ocea genus Citromicrobium root:Environmental:Aquatic:Marine 4.0 species Pseudoalteromonas sp. P1-11 root:Environmental:Aquatic:Marine 14.0 species Pseudoalteromonas sp. P1-11 root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 -species Polycyclovorans algicola root:Environmental:Aquatic:Marine 2.0 -species Polycyclovorans algicola root:Environmental:Aquatic:Marine:Sediment 1.0 -species Polycyclovorans algicola root:Environmental:Aquatic 2.0 -species Polycyclovorans algicola root:Environmental:Terrestrial:Soil:Sand 2.0 -species Polycyclovorans algicola root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -species Sphingobium xenophagum root:Environmental:Aquatic:Marine 1.0 +species Sphingobium xenophagum root:Environmental:Aquatic:Marine 3.0 species Pseudonocardia autotrophica root:Environmental:Aquatic:Marine 2.0 species Roseovarius indicus root:Environmental:Aquatic:Marine 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine 2.0 @@ -52456,12 +53793,14 @@ phylum Calditrichaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 3.0 phylum Calditrichaeota root:Host-associated:Plants 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Estuary:Sediment 1.0 +phylum Calditrichaeota root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Calditrichaeota root:Mixed 2.0 phylum Calditrichaeota root:Engineered:Food production:Dairy products 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Sediment 18.0 phylum Calditrichaeota root:Environmental:Aquatic:Sediment 3.0 +phylum Calditrichaeota root:Engineered:Lab enrichment 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Coastal 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Cold seeps 5.0 @@ -52471,7 +53810,6 @@ phylum Calditrichaeota root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Marginal Sea 1.0 phylum Calditrichaeota root:Engineered:Lab enrichment:Defined media:Marine media 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 -phylum Calditrichaeota root:Engineered:Lab enrichment 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 2.0 phylum Calditrichaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 phylum Calditrichaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 @@ -52482,7 +53820,7 @@ order Kiloniellales root:Environmental:Aquatic:Marine:Oceanic 2.0 order Kiloniellales root:Host-associated:Plants 1.0 order Kiloniellales root:Mixed 1.0 order Kiloniellales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -order Kiloniellales root:Environmental:Aquatic:Marine:Sediment 18.0 +order Kiloniellales root:Environmental:Aquatic:Marine:Sediment 19.0 order Kiloniellales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Kiloniellales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 order Kiloniellales root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -52534,15 +53872,15 @@ family Kiloniellaceae root:Environmental:Aquatic:Marine:Oceanic 2.0 family Kiloniellaceae root:Host-associated:Plants 2.0 family Kiloniellaceae root:Mixed 2.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 -family Kiloniellaceae root:Environmental:Aquatic:Marine:Sediment 23.0 +family Kiloniellaceae root:Environmental:Aquatic:Marine:Sediment 24.0 family Kiloniellaceae root:Host-associated:Porifera 5.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Brackish 1.0 -family Kiloniellaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Kiloniellaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Kiloniellaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 2.0 family Kiloniellaceae root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 @@ -52556,21 +53894,7 @@ genus Calorithrix root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Calorithrix root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Calorithrix root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Calorithrix root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 -class Nitriliruptoria root:Environmental:Aquatic:Marine 4.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil:Agricultural 1.0 -class Nitriliruptoria root:Engineered:Bioreactor 1.0 -class Nitriliruptoria root:Host-associated:Mammals 1.0 -class Nitriliruptoria root:Engineered:Food production:Dairy products 1.0 -class Nitriliruptoria root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil 2.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil:Desert 2.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil:Sand 1.0 -class Nitriliruptoria root:Environmental:Aquatic:Thermal springs:Sediment 1.0 -class Nitriliruptoria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -class Nitriliruptoria root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 -class Nitriliruptoria root:Environmental:Terrestrial:Soil:Sand:Desert 1.0 -order Nitriliruptorales root:Environmental:Aquatic:Marine 2.0 +order Nitriliruptorales root:Environmental:Aquatic:Marine 3.0 order Nitriliruptorales root:Host-associated:Mammals 1.0 order Nitriliruptorales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 order Nitriliruptorales root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -52588,11 +53912,12 @@ family Nitriliruptoraceae root:Environmental:Aquatic:Non-marine Saline and Alkal family Nitriliruptoraceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family Kofleriaceae root:Environmental:Aquatic:Marine 3.0 family Kofleriaceae root:Environmental:Terrestrial:Soil:Agricultural 5.0 +family Kofleriaceae root:Engineered:Wastewater:Activated Sludge 1.0 family Kofleriaceae root:Environmental:Terrestrial:Soil 9.0 family Kofleriaceae root:Environmental:Aquatic:Marine:Sediment 3.0 +family Kofleriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Kofleriaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Kofleriaceae root:Host-associated:Plants:Root 1.0 -family Kofleriaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Kofleriaceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Kofleriaceae root:Engineered:Wastewater:Water and sludge 1.0 family Kofleriaceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -52608,9 +53933,9 @@ species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Freshwater:Lot species Gram-positive bacterium SOGA22 root:Host-associated:Plants:Rhizosphere 1.0 species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Marine:Sediment 6.0 +species Gram-positive bacterium SOGA22 root:Engineered:Lab enrichment 1.0 species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Gram-positive bacterium SOGA22 root:Host-associated:Invertebrates:Echinodermata 1.0 -species Gram-positive bacterium SOGA22 root:Engineered:Lab enrichment 1.0 species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 species Gram-positive bacterium SOGA22 root:Host-associated:Mammals:Skin 1.0 species Gram-positive bacterium SOGA22 root:Environmental:Aquatic:Marine:Wetlands 1.0 @@ -52655,6 +53980,7 @@ family Paracalanidae root:Environmental:Aquatic:Marine 4.0 family Paracalanidae root:Environmental:Aquatic:Marine:Coastal 2.0 family Paracalanidae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 species Lanice conchilega root:Environmental:Aquatic:Marine 2.0 +species Lanice conchilega root:Environmental:Aquatic:Marine:Sediment 1.0 species Partenskyella glossopodia root:Environmental:Aquatic:Marine 1.0 species Partenskyella glossopodia root:Environmental:Aquatic:Marine:Oceanic 2.0 species Kofoidinium cf. pavillardii root:Environmental:Aquatic:Marine 1.0 @@ -52663,7 +53989,7 @@ species Kofoidinium cf. pavillardii root:Environmental:Aquatic:Marine:Neritic zo species Warnowia sp. FG20 root:Environmental:Aquatic:Marine 3.0 species Warnowia sp. FG20 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Warnowia sp. FG20 root:Environmental:Aquatic:Marine:Neritic zone 1.0 -species Parvocalanus crassirostris root:Environmental:Aquatic:Marine 2.0 +species Parvocalanus crassirostris root:Environmental:Aquatic:Marine 3.0 species Parvocalanus crassirostris root:Environmental:Aquatic:Marine:Oceanic 1.0 species Parvocalanus crassirostris root:Environmental:Aquatic 1.0 species Parvocalanus crassirostris root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -52726,9 +54052,9 @@ class Chloroflexia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 class Chloroflexia root:Engineered:Bioreactor 4.0 class Chloroflexia root:Mixed 2.0 class Chloroflexia root:Environmental:Aquatic:Marine:Sediment 2.0 +class Chloroflexia root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Chloroflexia root:Engineered:Lab enrichment:Defined media 2.0 class Chloroflexia root:Host-associated:Plants:Root 1.0 -class Chloroflexia root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Chloroflexia root:Environmental:Aquatic:Thermal springs:Sediment 1.0 class Chloroflexia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 class Chloroflexia root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 @@ -52747,6 +54073,7 @@ species Glaciecola sp. HTCC2999 root:Environmental:Aquatic:Marine:Oceanic 5.0 species Glaciecola sp. HTCC2999 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Glaciecola sp. HTCC2999 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Glaciecola sp. HTCC2999 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Glaciecola sp. HTCC2999 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Glaciecola sp. HTCC2999 root:Environmental:Aquatic:Aquaculture 1.0 species Marinomonas profundimaris root:Environmental:Aquatic:Marine 1.0 species gamma proteobacterium HTCC2207 root:Environmental:Aquatic:Marine 1.0 @@ -52766,7 +54093,6 @@ species Marinomonas sp. MWYL1 root:Environmental:Aquatic:Marine 1.0 species Marinomonas sp. MWYL1 root:Environmental:Aquatic:Aquaculture 1.0 species Colwellia sp. TT2012 root:Environmental:Aquatic:Marine 1.0 species Alcanivorax sp. P2S70 root:Environmental:Aquatic:Marine 3.0 -species Leeuwenhoekiella palythoae root:Environmental:Aquatic:Marine 3.0 species Pseudoalteromonas shioyasakiensis root:Environmental:Aquatic:Marine 2.0 species Pseudoalteromonas shioyasakiensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Pseudoalteromonas shioyasakiensis root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -52786,6 +54112,7 @@ class Trebouxiophyceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Trebouxiophyceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 class Trebouxiophyceae root:Host-associated:Animal:Digestive system:Fecal 1.0 class Trebouxiophyceae root:Environmental:Air 1.0 +class Trebouxiophyceae root:Host-associated:Fungi 1.0 order Cymatosirales root:Environmental:Aquatic:Marine 3.0 order Cercomonadida root:Environmental:Aquatic:Marine 1.0 order Cercomonadida root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -52830,13 +54157,15 @@ family Calanidae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1. family Calanidae root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 family Calanidae root:Host-associated:Microbial:Bacteria 1.0 species Oikopleura sp. root:Environmental:Aquatic:Marine 3.0 -species Oikopleura sp. root:Environmental:Aquatic:Marine:Oceanic 2.0 +species Oikopleura sp. root:Environmental:Aquatic:Marine:Oceanic 3.0 species Oikopleura sp. root:Host-associated:Arthropoda 1.0 species Telonema subtile root:Environmental:Aquatic:Marine 6.0 species Telonema subtile root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Telonema subtile root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Telonema subtile root:Environmental:Aquatic:Marine:Sediment 1.0 species Telonema subtile root:Environmental:Aquatic 1.0 species Telonema subtile root:Environmental:Aquatic:Marine:Coastal 2.0 +species Telonema subtile root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Sticholonche-like environmental clone KW16 root:Environmental:Aquatic:Marine 4.0 species Sticholonche-like environmental clone KW16 root:Environmental:Aquatic:Marine:Oceanic 3.0 species Rhodobacteraceae bacterium SB2 root:Environmental:Aquatic:Marine 5.0 @@ -52867,6 +54196,7 @@ species Candidatus Nitrosopumilus sediminis root:Environmental:Aquatic:Marine:In species Candidatus Nitrosopumilus sediminis root:Environmental:Aquatic:Estuary 1.0 species Candidatus Nitrosopumilus sediminis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species Candidatus Nitrosopumilus sediminis root:Environmental:Aquatic:Marine:Pelagic 1.0 +species Candidatus Nitrosopumilus sediminis root:Engineered:Lab enrichment:Defined media:Marine media 1.0 order Poecilostomatoida root:Environmental:Aquatic:Marine 7.0 order Poecilostomatoida root:Environmental:Aquatic:Marine:Oceanic 3.0 order Poecilostomatoida root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -52907,7 +54237,7 @@ phylum Candidatus Heimdallarchaeota root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Heimdallarchaeota root:Environmental:Aquatic:Marine:Sediment 3.0 phylum Candidatus Heimdallarchaeota root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Thermococcales root:Environmental:Aquatic:Marine 2.0 -order Thermococcales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Thermococcales root:Environmental:Aquatic:Marine:Sediment 3.0 order Thermococcales root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Thermococcales root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order Thermococcales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -52955,7 +54285,7 @@ family Thermococcaceae root:Engineered:Modeled 1.0 family Thermococcaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 family Thermococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Marine 1.0 -family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Candidatus Desulfofervidaceae root:Environmental:Aquatic:Estuary 1.0 @@ -52983,12 +54313,12 @@ family Calditrichaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Sediment 9.0 family Calditrichaceae root:Environmental:Aquatic:Sediment 1.0 +family Calditrichaceae root:Engineered:Lab enrichment 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Cold seeps 3.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Marginal Sea 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -family Calditrichaceae root:Engineered:Lab enrichment 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Calditrichaceae root:Environmental:Aquatic:Marine:Cold seeps:Sediment 2.0 family Calditrichaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -53003,7 +54333,7 @@ genus Thermococcus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1 genus Thermococcus root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Thermococcus root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 genus Candidatus Desulfofervidus root:Environmental:Aquatic:Marine 1.0 -genus Candidatus Desulfofervidus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Candidatus Desulfofervidus root:Environmental:Aquatic:Marine:Sediment 2.0 genus Candidatus Desulfofervidus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Candidatus Desulfofervidus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Candidatus Desulfofervidus root:Environmental:Aquatic:Estuary 1.0 @@ -53028,23 +54358,14 @@ species Candidatus Bathyarchaeota archaeon JdFR-08 root:Environmental:Aquatic:Ma species Candidatus Bathyarchaeota archaeon JdFR-08 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Thermococcus sp. EP1 root:Environmental:Aquatic:Marine 1.0 order Oxyrrhinales root:Environmental:Aquatic:Marine 1.0 -family Collophidiidae root:Environmental:Aquatic:Marine 4.0 -family Collophidiidae root:Environmental:Aquatic:Marine:Oceanic 1.0 -family Collophidiidae root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Collophidium root:Environmental:Aquatic:Marine 5.0 -genus Collophidium root:Environmental:Aquatic:Marine:Oceanic 2.0 -genus Collophidium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Vermamoeba root:Environmental:Aquatic:Marine 1.0 genus Vermamoeba root:Engineered:Bioreactor 1.0 genus Vermamoeba root:Engineered:Wastewater 1.0 -genus Vermamoeba root:Environmental:Aquatic:Freshwater 1.0 +genus Vermamoeba root:Environmental:Aquatic:Freshwater 2.0 genus Vermamoeba root:Environmental:Aquatic:Freshwater:Drinking water 2.0 genus Vermamoeba root:Environmental:Terrestrial:Deep subsurface 2.0 genus Vermamoeba root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Collophidium ovatum root:Environmental:Aquatic:Marine 2.0 -species Collophidium ovatum root:Environmental:Aquatic:Marine:Oceanic 1.0 species Medusetta parthenopaea root:Environmental:Aquatic:Marine 1.0 -species Collozoum pelagicum root:Environmental:Aquatic:Marine 1.0 species Collozoum amoeboides root:Environmental:Aquatic:Marine 3.0 species Collozoum amoeboides root:Environmental:Aquatic:Marine:Sediment 1.0 species Sphaerozoum punctatum root:Environmental:Aquatic:Marine 3.0 @@ -53053,6 +54374,7 @@ species Symphyacanthida sp. 211 root:Environmental:Aquatic:Marine:Neritic zone 1 genus Bacteriovorax root:Environmental:Aquatic:Marine 2.0 genus Bacteriovorax root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Bacteriovorax root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Bacteriovorax root:Environmental:Aquatic:Marine:Sediment 1.0 genus Bacteriovorax root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Bacteriovorax root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Ostreococcus 'lucimarinus' root:Environmental:Aquatic:Marine 3.0 @@ -53124,14 +54446,14 @@ family Erwiniaceae root:Host-associated:Plants 5.0 family Erwiniaceae root:Engineered:Bioreactor 1.0 family Erwiniaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family Erwiniaceae root:Host-associated:Mammals 1.0 -family Erwiniaceae root:Engineered:Food production:Fermented beverages 2.0 +family Erwiniaceae root:Engineered:Food production:Fermented beverages 3.0 family Erwiniaceae root:Engineered:Food production:Dairy products 2.0 family Erwiniaceae root:Engineered:Lab Synthesis 1.0 family Erwiniaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Erwiniaceae root:Engineered:Food production 2.0 family Erwiniaceae root:Host-associated:Insecta:Digestive system 2.0 -family Erwiniaceae root:Host-associated:Insecta 2.0 -family Erwiniaceae root:Engineered:Built environment 3.0 +family Erwiniaceae root:Host-associated:Insecta 3.0 +family Erwiniaceae root:Engineered:Built environment 4.0 family Erwiniaceae root:Engineered:Food production:Fermented vegetables 1.0 family Erwiniaceae root:Host-associated:Birds 2.0 species Asanoa ferruginea root:Environmental:Aquatic:Marine 1.0 @@ -53229,6 +54551,7 @@ genus Porticoccus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1 genus Porticoccus root:Environmental:Aquatic:Marine:Coastal 1.0 genus Porticoccus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Porticoccus root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +genus Porticoccus root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Porticoccus root:Environmental:Aquatic:Marine:Volcanic 1.0 species Corethron pennatum root:Environmental:Aquatic:Marine 9.0 species Corethron pennatum root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -53252,9 +54575,11 @@ class Acidithiobacillia root:Host-associated:Cnidaria 1.0 class Acidithiobacillia root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 family Ferrimonadaceae root:Environmental:Aquatic:Marine 2.0 genus Enterovibrio root:Environmental:Aquatic:Marine 2.0 +genus Enterovibrio root:Host-associated:Fish:Digestive system 1.0 genus Oceanisphaera root:Environmental:Aquatic:Marine 1.0 genus Allomonas root:Environmental:Aquatic:Marine 1.0 genus Catenococcus root:Environmental:Aquatic:Marine 1.0 +genus Catenococcus root:Host-associated:Fish:Digestive system 1.0 species Catenovulum maritimum root:Environmental:Aquatic:Marine 1.0 species Catenovulum maritimum root:Environmental:Aquatic:Sediment 1.0 species Catenovulum maritimum root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -53277,7 +54602,7 @@ species Vibrio metschnikovii root:Environmental:Aquatic:Marine 1.0 species Vibrio metschnikovii root:Engineered:Lab enrichment 1.0 species Vibrio metschnikovii root:Host-associated:Arthropoda 1.0 species Vibrio sagamiensis root:Environmental:Aquatic:Marine 1.0 -class Arachnida root:Environmental:Aquatic:Marine 4.0 +class Arachnida root:Environmental:Aquatic:Marine 5.0 class Arachnida root:Environmental:Aquatic:Marine:Oceanic 2.0 class Arachnida root:Host-associated:Plants 6.0 class Arachnida root:Engineered:Bioreactor 1.0 @@ -53295,6 +54620,7 @@ class Arachnida root:Engineered:Food production 1.0 class Arachnida root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 class Arachnida root:Engineered:Built environment 1.0 class Arachnida root:Host-associated:Arthropoda 1.0 +class Arachnida root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 class Arachnida root:Host-associated:Human:Circulatory system 1.0 class Arachnida root:Host-associated:Human:Lympathic system:Lymph nodes 1.0 order Astigmata root:Environmental:Aquatic:Marine 2.0 @@ -53332,12 +54658,9 @@ species Oikopleura labradoriensis root:Environmental:Aquatic:Marine:Coastal 1.0 species Hippolyte obliquimanus root:Environmental:Aquatic:Marine 1.0 species Tomopteris sp. Tsp24882 root:Environmental:Aquatic:Marine 1.0 species Bothriurus sp. ARP-2015 root:Environmental:Aquatic:Marine 1.0 -species Citreicella sp. SE45 root:Environmental:Aquatic:Marine 3.0 -species Citreicella sp. SE45 root:Environmental:Aquatic:Marine:Brackish 1.0 species Prorocentrum minimum root:Environmental:Aquatic:Marine 4.0 species Prorocentrum minimum root:Environmental:Aquatic:Marine:Pelagic 1.0 species Prorocentrum minimum root:Engineered:Bioremediation:Hydrocarbon 1.0 -species Hoeflea phototrophica root:Environmental:Aquatic:Marine 2.0 species Mesorhizobium sp. B7 root:Environmental:Aquatic:Marine 1.0 species Marinicauda pacifica root:Environmental:Aquatic:Marine 1.0 species gamma proteobacterium 126 root:Environmental:Aquatic:Marine 1.0 @@ -53417,9 +54740,38 @@ genus Cupriavidus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Cupriavidus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Hydrobacter root:Environmental:Aquatic:Marine 1.0 genus Hydrobacter root:Environmental:Aquatic:Marine:Brackish 1.0 -genus Zunongwangia root:Environmental:Aquatic:Marine 3.0 +genus Zunongwangia root:Environmental:Aquatic:Marine 4.0 species Hydrobacter penzbergensis root:Environmental:Aquatic:Marine 1.0 species Hydrobacter penzbergensis root:Environmental:Aquatic:Marine:Brackish 1.0 +family Endozoicomonaceae root:Environmental:Aquatic:Marine 3.0 +family Endozoicomonaceae root:Mixed 2.0 +family Endozoicomonaceae root:Host-associated:Porifera 7.0 +family Endozoicomonaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 7.0 +family Endozoicomonaceae root:Environmental:Aquatic:Marine:Coastal 1.0 +family Endozoicomonaceae root:Host-associated 1.0 +family Endozoicomonaceae root:Environmental:Aquatic:Marine:Brackish 1.0 +family Endozoicomonaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +family Endozoicomonaceae root:Host-associated:Cnidaria 1.0 +genus Endozoicomonas root:Environmental:Aquatic:Marine 3.0 +genus Endozoicomonas root:Mixed 4.0 +genus Endozoicomonas root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Endozoicomonas root:Host-associated:Porifera 9.0 +genus Endozoicomonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 10.0 +genus Endozoicomonas root:Environmental:Aquatic:Marine:Coastal 1.0 +genus Endozoicomonas root:Host-associated 1.0 +genus Endozoicomonas root:Environmental:Aquatic:Marine:Brackish 1.0 +genus Endozoicomonas root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 +genus Endozoicomonas root:Host-associated:Cnidaria 1.0 +species bacterium AMSU root:Environmental:Aquatic:Marine 2.0 +species bacterium AMSU root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species bacterium AMSU root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 +species bacterium AMSU root:Environmental:Aquatic:Marine:Sediment 2.0 +species Chaetoceros brevis root:Environmental:Aquatic:Marine 5.0 +species Chaetoceros brevis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Chaetoceros brevis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Chaetoceros brevis root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 +species Canthocalanus pauper root:Environmental:Aquatic:Marine 2.0 +species Canthocalanus pauper root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Leucothrix root:Environmental:Aquatic:Marine 2.0 genus Leucothrix root:Host-associated:Fish 2.0 genus Leucothrix root:Host-associated:Plants 1.0 @@ -53463,6 +54815,7 @@ species Halecium pusillum root:Environmental:Aquatic:Marine 1.0 species Derbesia sp. WEST4838 root:Environmental:Aquatic:Marine 1.0 genus Oleiphilus root:Environmental:Aquatic:Marine 6.0 genus Oleiphilus root:Environmental:Aquatic:Marine:Oceanic 2.0 +genus Oleiphilus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Oleiphilus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Oleiphilus root:Environmental:Aquatic:Marine:Sediment 7.0 genus Oleiphilus root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -53554,7 +54907,7 @@ genus Methyloceanibacter root:Host-associated:Annelida:Digestive system 1.0 species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine 1.0 species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Estuary:Sediment 3.0 -species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 +species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine:Sediment 2.0 species delta proteobacterium PSCGC 5451 root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Pleurocapsa sp. PCC 7319 root:Environmental:Aquatic:Marine 1.0 @@ -53624,9 +54977,9 @@ order Chloroflexales root:Engineered:Bioreactor 1.0 order Chloroflexales root:Mixed 1.0 order Chloroflexales root:Environmental:Terrestrial:Soil 2.0 order Chloroflexales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Chloroflexales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Chloroflexales root:Engineered:Lab enrichment:Defined media 2.0 order Chloroflexales root:Host-associated:Plants:Root 1.0 -order Chloroflexales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Chloroflexales root:Environmental:Aquatic:Thermal springs:Sediment 2.0 order Chloroflexales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Chloroflexales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 2.0 @@ -53706,6 +55059,8 @@ species Sinistrostrombidium cupiformum root:Environmental:Aquatic:Marine:Oceanic species Sinistrostrombidium cupiformum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Solanales root:Environmental:Aquatic:Marine 3.0 order Solanales root:Host-associated:Plants 1.0 +order Solanales root:Engineered:Food production:Dairy products 1.0 +order Solanales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Solanales root:Environmental:Aquatic:Freshwater 1.0 order Solanales root:Host-associated:Plants:Root 1.0 order Solanales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -53715,22 +55070,32 @@ order Solanales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Oligoflexales root:Environmental:Aquatic:Marine 2.0 order Oligoflexales root:Environmental:Terrestrial:Soil 2.0 order Oligoflexales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Oligoflexales root:Host-associated:Mammals:Digestive system:Midgut 1.0 order Oligoflexales root:Environmental:Aquatic:Estuary 1.0 order Oligoflexales root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 family Solanaceae root:Environmental:Aquatic:Marine 2.0 family Solanaceae root:Host-associated:Plants 1.0 +family Solanaceae root:Engineered:Food production:Dairy products 1.0 +family Solanaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +family Solanaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Solanaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Solanaceae root:Host-associated:Insecta:Digestive system 1.0 family Solanaceae root:Engineered:Wastewater:Water and sludge 1.0 family Solanaceae root:Environmental:Aquatic:Marine:Intertidal zone 1.0 genus Nicotiana root:Environmental:Aquatic:Marine 1.0 genus Nicotiana root:Host-associated:Plants 1.0 +genus Nicotiana root:Engineered:Food production:Dairy products 1.0 genus Nicotiana root:Host-associated:Plants:Rhizosphere 1.0 +genus Nicotiana root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +genus Nicotiana root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Nicotiana root:Engineered:Wastewater:Water and sludge 1.0 -species Nicotiana attenuata root:Environmental:Aquatic:Marine 1.0 +species Nicotiana attenuata root:Environmental:Aquatic:Marine 2.0 species Nicotiana attenuata root:Host-associated:Human:Skin 1.0 species Nicotiana attenuata root:Engineered:Food production:Fermented beverages 1.0 +species Nicotiana attenuata root:Engineered:Food production:Dairy products 1.0 species Nicotiana attenuata root:Host-associated:Plants:Rhizosphere 2.0 +species Nicotiana attenuata root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Nicotiana attenuata root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Nicotiana attenuata root:Engineered:Wastewater:Water and sludge 1.0 species Nicotiana otophora root:Environmental:Aquatic:Marine 1.0 family NS11-12 root:Environmental:Aquatic:Marine 1.0 @@ -53749,10 +55114,13 @@ species bacterium RFB D08 root:Environmental:Aquatic:Marine:Pelagic 1.0 species bacterium RFB D08 root:Environmental:Aquatic:Aquaculture 1.0 species bacterium RFB D08 root:Host-associated:Cnidaria 1.0 species Pseudoalteromonas sp. BS6 77 root:Environmental:Aquatic:Marine 1.0 +family Diplonemidae root:Environmental:Aquatic:Marine 1.0 +family Diplonemidae root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Novosphingobium sp. MBES04 root:Environmental:Aquatic:Marine 1.0 +species Zunongwangia mangrovi root:Environmental:Aquatic:Marine 1.0 species Alteromonas lipolytica root:Environmental:Aquatic:Marine 3.0 species Alteromonas lipolytica root:Environmental:Aquatic:Marine:Coastal 1.0 species Alteromonas lipolytica root:Environmental:Aquatic:Marine:Brackish 6.0 -species Porticoccus hydrocarbonoclasticus root:Environmental:Aquatic:Marine 3.0 species Loktanella cinnabarina root:Environmental:Aquatic:Marine 3.0 family Undellidae root:Environmental:Aquatic:Marine 1.0 genus Salpingella root:Environmental:Aquatic:Marine 1.0 @@ -53805,16 +55173,48 @@ species Calocalanus pavo root:Environmental:Aquatic 1.0 species Candidatus Saccharibacteria bacterium 49-20 root:Environmental:Aquatic:Marine 2.0 species Candidatus Saccharibacteria bacterium 49-20 root:Host-associated:Plants 1.0 species Candidatus Saccharibacteria bacterium 49-20 root:Environmental:Terrestrial:Soil:Contaminated 1.0 -species Idiomarina abyssalis root:Environmental:Aquatic:Marine 2.0 -species Idiomarina abyssalis root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Candidatus Saccharibacteria bacterium 49-20 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Dehalobacter root:Environmental:Aquatic:Marine 1.0 species Methanococcoides methylutens root:Environmental:Aquatic:Marine 1.0 species Methanococcoides methylutens root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Methanococcoides methylutens root:Engineered:Bioreactor 1.0 species Methanococcoides methylutens root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +family Dietziaceae root:Environmental:Aquatic:Marine 1.0 +family Dietziaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 +family Dietziaceae root:Environmental:Terrestrial:Soil 2.0 +family Dietziaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +family Dietziaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Dietziaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 +genus Dietzia root:Environmental:Aquatic:Marine 1.0 +genus Dietzia root:Environmental:Terrestrial:Soil:Agricultural 1.0 +genus Dietzia root:Engineered:Bioreactor 1.0 +genus Dietzia root:Engineered:Wastewater:Activated Sludge 2.0 +genus Dietzia root:Mixed 1.0 +genus Dietzia root:Environmental:Terrestrial:Soil 2.0 +genus Dietzia root:Environmental:Aquatic:Marine:Cold seeps 1.0 +genus Dietzia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +genus Dietzia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Dietzia root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 +genus Dietzia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Henriciella root:Environmental:Aquatic:Marine 1.0 +genus Limnobacter root:Environmental:Aquatic:Marine 3.0 +genus Limnobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Limnobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 +genus Limnobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Limnobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Limnobacter root:Environmental:Aquatic:Freshwater:Lotic 1.0 +genus Limnobacter root:Environmental:Aquatic:Marine:Coastal 1.0 +genus Limnobacter root:Engineered:Industrial production 1.0 +species Brevundimonas abyssalis root:Environmental:Aquatic:Marine 1.0 +species Henriciella aquimarina root:Environmental:Aquatic:Marine 1.0 +species Limnobacter sp. CACIAM 66H1 root:Environmental:Aquatic:Marine 1.0 +species Limnobacter sp. CACIAM 66H1 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +species Limnobacter sp. CACIAM 66H1 root:Environmental:Aquatic:Freshwater:Lotic 1.0 +species Marivirga tractuosa root:Environmental:Aquatic:Marine 1.0 +species Phenylobacterium sp. Root700 root:Environmental:Aquatic:Marine 1.0 order Synurales root:Environmental:Aquatic:Marine 1.0 species Pseudoalteromonas sp. SM9913 root:Environmental:Aquatic:Marine 1.0 -family Aphanothecaceae root:Environmental:Aquatic:Marine 3.0 +family Aphanothecaceae root:Environmental:Aquatic:Marine 4.0 family Aphanothecaceae root:Host-associated:Porifera 2.0 genus Biecheleria root:Environmental:Aquatic:Marine 2.0 genus Biecheleria root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -53825,7 +55225,7 @@ genus Biecheleria root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Bordetella root:Environmental:Aquatic:Marine 1.0 genus Bordetella root:Engineered:Bioreactor 4.0 genus Bordetella root:Host-associated:Human:Digestive system:Oral 1.0 -genus Dactylococcopsis root:Environmental:Aquatic:Marine 1.0 +genus Dactylococcopsis root:Environmental:Aquatic:Marine 2.0 species Spiribacter salinus root:Environmental:Aquatic:Marine 1.0 species Spiribacter salinus root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Spiribacter salinus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -53833,9 +55233,9 @@ species Biecheleria brevisulcata root:Environmental:Aquatic:Marine 1.0 species Biecheleria brevisulcata root:Environmental:Aquatic:Marine:Coastal 1.0 species Biecheleria brevisulcata root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Bordetella bronchialis root:Environmental:Aquatic:Marine 1.0 -species Dactylococcopsis salina root:Environmental:Aquatic:Marine 1.0 +species Dactylococcopsis salina root:Environmental:Aquatic:Marine 2.0 species Dactylococcopsis salina root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -species Roseovarius atlanticus root:Environmental:Aquatic:Marine 1.0 +species Roseovarius atlanticus root:Environmental:Aquatic:Marine 2.0 genus Flexithrix root:Environmental:Aquatic:Marine 1.0 species actinobacterium SCGC AAA278-O22 root:Environmental:Aquatic:Marine 1.0 species actinobacterium SCGC AAA278-O22 root:Environmental:Aquatic:Estuary 1.0 @@ -53864,8 +55264,8 @@ phylum Zoopagomycota root:Environmental:Terrestrial:Soil 1.0 phylum Zoopagomycota root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 phylum Zoopagomycota root:Environmental:Terrestrial:Deep subsurface 1.0 phylum Zoopagomycota root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -phylum Zoopagomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Zoopagomycota root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +phylum Zoopagomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Zoopagomycota root:Host-associated:Insecta 1.0 phylum Zoopagomycota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 class Prostomatea root:Environmental:Aquatic:Marine 2.0 @@ -53883,8 +55283,6 @@ family Thaumatomastigidae root:Host-associated:Mammals 1.0 family Thaumatomastigidae root:Environmental:Aquatic:Marine:Sediment 3.0 family Thaumatomastigidae root:Environmental:Aquatic:Marine:Coastal 2.0 family Thaumatomastigidae root:Environmental:Terrestrial:Soil:Loam 1.0 -family Prorodontidae root:Environmental:Aquatic:Marine 1.0 -genus Prorodon root:Environmental:Aquatic:Marine 1.0 genus Mataza root:Environmental:Aquatic:Marine 2.0 species Mataza sp. SIOpierMataz1 root:Environmental:Aquatic:Marine 2.0 species Rhizosolenia similoides root:Environmental:Aquatic:Marine 1.0 @@ -53922,14 +55320,6 @@ species Magnetovibrio blakemorei root:Environmental:Aquatic:Marine 1.0 species Mariprofundus micogutta root:Environmental:Aquatic:Marine 1.0 species Mariprofundus micogutta root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Pseudorhizobium root:Environmental:Aquatic:Marine 1.0 -genus Maribacter root:Environmental:Aquatic:Marine 1.0 -genus Maribacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -genus Maribacter root:Host-associated:Plants 1.0 -genus Maribacter root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Maribacter root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 -genus Maribacter root:Host-associated:Algae:Red algae 4.0 -genus Maribacter root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -genus Maribacter root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Bacteriovorax sp. Seq25 V root:Environmental:Aquatic:Marine 1.0 species Pseudorhizobium pelagicum root:Environmental:Aquatic:Marine 1.0 species Roseobacter sp. MED193 root:Environmental:Aquatic:Marine 1.0 @@ -53982,6 +55372,14 @@ species Salinicola acroporae root:Environmental:Aquatic:Marine 1.0 species Salinicola sp. MIT1003 root:Environmental:Aquatic:Marine 1.0 species Sphingobium amiense root:Environmental:Aquatic:Marine 1.0 species Sulfitobacter sp. HI0082 root:Environmental:Aquatic:Marine 2.0 +class Choanoflagellata root:Environmental:Aquatic:Marine 1.0 +class Choanoflagellata root:Environmental:Aquatic:Marine:Oceanic 1.0 +class Choanoflagellata root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +genus Acuticoccus root:Environmental:Aquatic:Marine 1.0 +genus Alkalilimnicola root:Environmental:Aquatic:Marine 1.0 +species Pseudohaliea rubra root:Environmental:Aquatic:Marine 1.0 +species Pseudohaliea rubra root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 +species Alkalilimnicola ehrlichii root:Environmental:Aquatic:Marine 1.0 species Sulfitobacter sp. 191Z-21 root:Environmental:Aquatic:Marine 1.0 species Sulfitobacter sp. 191Z-21 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Sulfitobacter sp. 191Z-21 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -53993,6 +55391,7 @@ phylum Candidatus Moranbacteria root:Host-associated:Fish 1.0 phylum Candidatus Moranbacteria root:Engineered:Bioreactor 1.0 phylum Candidatus Moranbacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Candidatus Moranbacteria root:Engineered:Wastewater:Activated Sludge 1.0 +phylum Candidatus Moranbacteria root:Host-associated:Human:Digestive system:Oral 1.0 phylum Candidatus Moranbacteria root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Candidatus Moranbacteria root:Environmental:Aquatic:Sediment 1.0 phylum Candidatus Moranbacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -54005,7 +55404,7 @@ phylum Candidatus Moranbacteria root:Environmental:Aquatic:Non-marine Saline and phylum Candidatus Moranbacteria root:Host-associated:Arthropoda 1.0 genus Abiotrophia root:Environmental:Aquatic:Marine 1.0 genus Abiotrophia root:Host-associated:Fish 1.0 -genus Abiotrophia root:Host-associated:Human:Digestive system:Oral 3.0 +genus Abiotrophia root:Host-associated:Human:Digestive system:Oral 4.0 genus Abiotrophia root:Environmental:Aquatic:Marine:Sediment 1.0 genus Abiotrophia root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 genus Abiotrophia root:Host-associated:Arthropoda 1.0 @@ -54071,6 +55470,8 @@ class Malasseziomycetes root:Environmental:Aquatic:Marine:Oceanic 1.0 class Malasseziomycetes root:Host-associated:Human:Skin 9.0 class Malasseziomycetes root:Mixed 3.0 class Malasseziomycetes root:Environmental:Aquatic:Marine:Sediment 4.0 +class Malasseziomycetes root:Engineered:Lab enrichment 1.0 +class Malasseziomycetes root:Host-associated:Plants:Root 1.0 class Malasseziomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 class Malasseziomycetes root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 class Malasseziomycetes root:Engineered:Built environment 1.0 @@ -54078,6 +55479,7 @@ class Malasseziomycetes root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1. class Malasseziomycetes root:Host-associated:Human:Circulatory system 1.0 class Thecofilosea root:Environmental:Aquatic:Marine 1.0 class Thecofilosea root:Environmental:Aquatic:Marine:Oceanic 1.0 +class Thecofilosea root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Chaunacanthida root:Environmental:Aquatic:Marine 3.0 order Chaunacanthida root:Environmental:Aquatic:Marine:Oceanic 1.0 family Lophodiniaceae root:Environmental:Aquatic:Marine 2.0 @@ -54098,17 +55500,10 @@ species Malassezia restricta root:Host-associated:Human:Skin 3.0 species Malassezia restricta root:Environmental:Aquatic:Marine:Sediment 1.0 species Malassezia restricta root:Environmental:Terrestrial:Deep subsurface 1.0 species Malassezia restricta root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -species Chaetoceros brevis root:Environmental:Aquatic:Marine 4.0 -species Chaetoceros brevis root:Environmental:Aquatic:Marine:Sediment 1.0 -species Chaetoceros brevis root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 species Fusiforma themisticola root:Environmental:Aquatic:Marine 1.0 species Diaphanoeca undulata root:Environmental:Aquatic:Marine 1.0 species Chaetoceros laevisporus root:Environmental:Aquatic:Marine 1.0 species Diapensia lapponica root:Environmental:Aquatic:Marine 1.0 -order Alcyonacea root:Environmental:Aquatic:Marine 2.0 -order Alcyonacea root:Environmental:Aquatic:Marine:Sediment 1.0 -order Alcyonacea root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 2.0 -order Alcyonacea root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Collosphaeridae root:Environmental:Aquatic:Marine 3.0 family Collosphaeridae root:Environmental:Aquatic:Marine:Oceanic 2.0 genus Collosphaera root:Environmental:Aquatic:Marine 3.0 @@ -54131,18 +55526,21 @@ species Rhaphidozoum acuferum root:Environmental:Aquatic:Marine:Sediment 1.0 species Junceella aquamata root:Environmental:Aquatic:Marine 3.0 phylum Rhodothermaeota root:Environmental:Aquatic:Marine 2.0 phylum Rhodothermaeota root:Environmental:Aquatic:Marine:Oceanic 1.0 +phylum Rhodothermaeota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 phylum Rhodothermaeota root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 phylum Rhodothermaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 phylum Rhodothermaeota root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 phylum Rhodothermaeota root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 phylum Rhodothermaeota root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 class Rhodothermia root:Environmental:Aquatic:Marine 2.0 +class Rhodothermia root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Bacteroidetes bacterium GMDsbM5 root:Environmental:Aquatic:Marine 2.0 species Bacteroidetes bacterium GMDsbM5 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Pseudoalteromonas spongiae root:Environmental:Aquatic:Marine 1.0 species Pseudoalteromonas spongiae root:Environmental:Aquatic:Marine:Oceanic 1.0 species Rubricoccus marinus root:Environmental:Aquatic:Marine 1.0 species Rubricoccus marinus root:Environmental:Aquatic:Estuary:Sediment 1.0 +species Rubricoccus marinus root:Host-associated:Fish:Digestive system 1.0 species Flavobacteriaceae bacterium UJ101 root:Environmental:Aquatic:Marine 1.0 species Psychrobacter phenylpyruvicus root:Environmental:Aquatic:Marine 1.0 species Wenxinia saemankumensis root:Environmental:Aquatic:Marine 1.0 @@ -54172,6 +55570,7 @@ species Nitrosopelagicus sp. REDSEA-S25 B3 root:Environmental:Aquatic:Marine 1.0 species Halistemma rubrum root:Environmental:Aquatic:Marine 1.0 genus Apolemia root:Environmental:Aquatic:Marine 1.0 species Cupriavidus metallidurans root:Environmental:Aquatic:Marine 1.0 +species Cupriavidus metallidurans root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Photobacterium angustum root:Environmental:Aquatic:Marine 1.0 species Photobacterium angustum root:Engineered:Food production 1.0 species Pseudomonas sp. NBRC 111131 root:Environmental:Aquatic:Marine 1.0 @@ -54181,6 +55580,11 @@ species Acanthamoeba sp. root:Environmental:Aquatic:Marine:Sediment 1.0 species Acanthamoeba sp. root:Engineered:Wastewater:Industrial wastewater 1.0 species Acanthamoeba sp. root:Host-associated:Arthropoda 1.0 species Acanthamoeba sp. root:Engineered:Bioremediation 1.0 +genus Candidatus Hodgkinia root:Environmental:Aquatic:Marine 1.0 +species Candidatus Hodgkinia cicadicola root:Environmental:Aquatic:Marine 1.0 +species Hoeflea sp. BRH c9 root:Environmental:Aquatic:Marine 3.0 +species Hyphomonas atlantica root:Environmental:Aquatic:Marine 1.0 +species Hyphomonas atlantica root:Environmental:Aquatic:Marine:Brackish 4.0 species Erythrobacteraceae bacterium CCH12-C2 root:Environmental:Aquatic:Marine 1.0 genus Salinirepens root:Environmental:Aquatic:Marine 1.0 genus Salinirepens root:Environmental:Aquatic:Marine:Coastal 2.0 @@ -54203,7 +55607,8 @@ genus Terasakiella root:Host-associated:Cnidaria 1.0 genus Kordiimonas root:Environmental:Aquatic:Marine 1.0 genus Kordiimonas root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Kordiimonas root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Kordiimonas root:Environmental:Aquatic:Marine:Sediment 3.0 +genus Kordiimonas root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +genus Kordiimonas root:Environmental:Aquatic:Marine:Sediment 4.0 genus Kordiimonas root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 3.0 genus Kordiimonas root:Environmental:Aquatic:Marine:Brackish 1.0 genus Kordiimonas root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 @@ -54224,7 +55629,7 @@ phylum Nanoarchaeota root:Environmental:Aquatic:Marine 1.0 phylum Nanoarchaeota root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 10.0 phylum Nanoarchaeota root:Environmental:Aquatic:Estuary:Sediment 1.0 phylum Nanoarchaeota root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -phylum Nanoarchaeota root:Environmental:Aquatic:Marine:Sediment 4.0 +phylum Nanoarchaeota root:Environmental:Aquatic:Marine:Sediment 5.0 phylum Nanoarchaeota root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum Nanoarchaeota root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 phylum Nanoarchaeota root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 @@ -54239,30 +55644,11 @@ species bacterium OM241 root:Environmental:Aquatic:Marine 1.0 species bacterium OM241 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Alcanivorax jadensis root:Environmental:Aquatic:Marine 2.0 genus Candidatus Atelocyanobacterium root:Environmental:Aquatic:Marine 1.0 -family Endozoicomonaceae root:Environmental:Aquatic:Marine 2.0 -family Endozoicomonaceae root:Mixed 2.0 -family Endozoicomonaceae root:Host-associated:Porifera 7.0 -family Endozoicomonaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 7.0 -family Endozoicomonaceae root:Environmental:Aquatic:Marine:Coastal 1.0 -family Endozoicomonaceae root:Host-associated 1.0 -family Endozoicomonaceae root:Environmental:Aquatic:Marine:Brackish 1.0 -family Endozoicomonaceae root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -family Endozoicomonaceae root:Host-associated:Cnidaria 1.0 family Parvularculaceae root:Environmental:Aquatic:Marine 1.0 family Parvularculaceae root:Engineered:Wastewater 1.0 family Parvularculaceae root:Engineered:Wastewater:Industrial wastewater 1.0 family Parvularculaceae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Parvularculaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Endozoicomonas root:Environmental:Aquatic:Marine 2.0 -genus Endozoicomonas root:Mixed 4.0 -genus Endozoicomonas root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Endozoicomonas root:Host-associated:Porifera 9.0 -genus Endozoicomonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 10.0 -genus Endozoicomonas root:Environmental:Aquatic:Marine:Coastal 1.0 -genus Endozoicomonas root:Host-associated 1.0 -genus Endozoicomonas root:Environmental:Aquatic:Marine:Brackish 1.0 -genus Endozoicomonas root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -genus Endozoicomonas root:Host-associated:Cnidaria 1.0 genus Parasphingopyxis root:Environmental:Aquatic:Marine 1.0 genus Parasphingopyxis root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Spongiibacterium flavum root:Environmental:Aquatic:Marine 1.0 @@ -54408,11 +55794,11 @@ genus Thiogranum root:Host-associated:Plants:Rhizosphere 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 genus Thiogranum root:Environmental:Aquatic:Marine:Sediment 13.0 genus Thiogranum root:Environmental:Aquatic:Sediment 1.0 +genus Thiogranum root:Engineered:Lab enrichment 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Thiogranum root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Wetlands:Sediment 2.0 genus Thiogranum root:Host-associated:Invertebrates:Echinodermata 1.0 -genus Thiogranum root:Engineered:Lab enrichment 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 genus Thiogranum root:Environmental:Aquatic:Marine:Oil seeps 1.0 @@ -54439,6 +55825,7 @@ species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Marine 2.0 species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Candidatus Tenderia electrophaga root:Host-associated:Human:Digestive system:Large intestine 1.0 +species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 species Candidatus Tenderia electrophaga root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -54457,6 +55844,7 @@ species Acinetobacter radioresistens root:Environmental:Aquatic:Sediment 2.0 species Acinetobacter radioresistens root:Host-associated:Porifera 1.0 species Acinetobacter radioresistens root:Host-associated:Plants:Root 1.0 species Acinetobacter radioresistens root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +species Acinetobacter radioresistens root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Acinetobacter radioresistens root:Host-associated:Invertebrates:Echinodermata 1.0 species Rubrobacter radiotolerans root:Environmental:Aquatic:Marine 1.0 species Rubrobacter radiotolerans root:Environmental:Terrestrial:Soil 1.0 @@ -54478,6 +55866,7 @@ species sulfur-oxidizing bacterium NDII1.2 root:Environmental:Aquatic 1.0 species sulfur-oxidizing bacterium NDII1.2 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species sulfur-oxidizing bacterium NDII1.2 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Macrochaete psychrophila root:Environmental:Aquatic:Marine 1.0 +species Halomonas zincidurans root:Environmental:Aquatic:Marine 2.0 species Erythrobacter marinus root:Environmental:Aquatic:Marine 1.0 species Erythrobacter marinus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 phylum Gastrotricha root:Environmental:Aquatic:Marine 2.0 @@ -54518,6 +55907,7 @@ order Enoplida root:Environmental:Aquatic:Marine:Sediment 8.0 order Enoplida root:Environmental:Aquatic:Marine:Coastal 1.0 order Enoplida root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Mytiloida root:Environmental:Aquatic:Marine 1.0 +order Mytiloida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 order Monhysterida root:Environmental:Aquatic:Marine 1.0 order Monhysterida root:Environmental:Aquatic:Estuary:Sediment 2.0 order Monhysterida root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -54706,11 +56096,6 @@ family Spongodiscidae root:Environmental:Aquatic:Marine:Sediment 1.0 family Spongodiscidae root:Environmental:Aquatic 1.0 family Spongodiscidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 family Spongodiscidae root:Environmental:Aquatic:Marine:Marginal Sea 2.0 -family Actinommidae root:Environmental:Aquatic:Marine 2.0 -family Actinommidae root:Environmental:Aquatic:Marine:Oceanic 2.0 -family Actinommidae root:Environmental:Aquatic:Marine:Sediment 1.0 -family Actinommidae root:Environmental:Aquatic 1.0 -family Actinommidae root:Environmental:Aquatic:Marine:Neritic zone 1.0 family Syndiniaceae root:Environmental:Aquatic:Marine 1.0 genus Triastrum root:Environmental:Aquatic:Marine 2.0 genus Triastrum root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -54725,10 +56110,7 @@ species Arachnosphaera myriacantha root:Environmental:Aquatic:Marine:Oceanic 2.0 species Arachnosphaera myriacantha root:Environmental:Aquatic 1.0 species Arachnosphaera myriacantha root:Environmental:Aquatic:Marine:Neritic zone 1.0 species Pinus canariensis root:Environmental:Aquatic:Marine 1.0 -species Gjaerumia minor root:Environmental:Aquatic:Marine 1.0 species Plasmodium ovale root:Environmental:Aquatic:Marine 1.0 -species Canthocalanus pauper root:Environmental:Aquatic:Marine 1.0 -species Canthocalanus pauper root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 order Macrostomida root:Environmental:Aquatic:Marine 1.0 order Macrostomida root:Environmental:Aquatic:Marine:Sediment 1.0 order Macrostomida root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 @@ -54753,6 +56135,42 @@ species Pseudopelagicola gijangensis root:Environmental:Aquatic:Marine 1.0 family Tovelliaceae root:Environmental:Aquatic:Marine 4.0 family Tovelliaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Tovelliaceae root:Environmental:Aquatic:Marine:Coastal 1.0 +order Araneae root:Environmental:Aquatic:Marine 1.0 +order Araneae root:Engineered:Food production:Dairy products 1.0 +order Araneae root:Environmental:Aquatic:Marine:Sediment 1.0 +order Diptera root:Environmental:Aquatic:Marine 1.0 +order Diptera root:Host-associated:Plants 1.0 +order Diptera root:Engineered:Bioreactor 1.0 +order Diptera root:Engineered:Food production:Fermented beverages 1.0 +order Diptera root:Environmental:Aquatic:Marine:Sediment 1.0 +order Diptera root:Host-associated:Insecta 1.0 +order Diptera root:Environmental:Aquatic:Freshwater:Storm water 1.0 +order Diptera root:Environmental:Air 1.0 +family Theridiidae root:Environmental:Aquatic:Marine 1.0 +genus Selenomonas root:Environmental:Aquatic:Marine 1.0 +genus Selenomonas root:Host-associated:Mammals:Digestive system 1.0 +genus Selenomonas root:Host-associated:Human:Digestive system:Oral 7.0 +genus Selenomonas root:Environmental:Aquatic:Sediment 1.0 +genus Selenomonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 +genus Selenomonas root:Host-associated:Human:Digestive system 2.0 +genus Selenomonas root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 4.0 +genus Selenomonas root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +genus Selenomonas root:Host-associated:Animal:Digestive system 1.0 +genus Selenomonas root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 +genus Selenomonas root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Steatoda grossa root:Environmental:Aquatic:Marine 1.0 +species Selenomonas sputigena root:Environmental:Aquatic:Marine 1.0 +species Selenomonas sputigena root:Host-associated:Human:Digestive system:Oral 4.0 +species Selenomonas sputigena root:Host-associated:Human:Digestive system 2.0 +species Selenomonas sputigena root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 +species Scardovia inopinata root:Environmental:Aquatic:Marine 1.0 +species Prevotella pleuritidis root:Environmental:Aquatic:Marine 1.0 +species Prevotella pleuritidis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 +species Actinobaculum sp. oral taxon 183 root:Environmental:Aquatic:Marine 1.0 +species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral 1.0 +species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system 2.0 +species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 +species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 order Sabellida root:Environmental:Aquatic:Marine 1.0 order Sabellida root:Environmental:Aquatic:Marine:Sediment 1.0 order Sabellida root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -54819,8 +56237,10 @@ order Streptomycetales root:Engineered:Bioreactor 2.0 order Streptomycetales root:Host-associated:Mammals 3.0 order Streptomycetales root:Host-associated:Plants:Rhizosphere 8.0 order Streptomycetales root:Environmental:Terrestrial:Soil 1.0 +order Streptomycetales root:Environmental:Aquatic:Marine:Sediment 1.0 order Streptomycetales root:Environmental:Aquatic:Sediment 1.0 order Streptomycetales root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +order Streptomycetales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Streptomycetales root:Engineered:Solid waste:Composting 2.0 order Streptomycetales root:Host-associated:Plants:Root 3.0 order Streptomycetales root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 @@ -54867,29 +56287,6 @@ genus Winogradskyella root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species bacterium enrichment culture clone 32(2013) root:Environmental:Aquatic:Marine 2.0 species bacterium enrichment culture clone 32(2013) root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Neptuniibacter caesariensis root:Environmental:Aquatic:Marine 1.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Marine 1.0 -family Rhodanobacteraceae root:Host-associated:Plants 1.0 -family Rhodanobacteraceae root:Environmental:Terrestrial:Soil:Agricultural 2.0 -family Rhodanobacteraceae root:Engineered:Bioreactor 3.0 -family Rhodanobacteraceae root:Engineered:Wastewater:Activated Sludge 13.0 -family Rhodanobacteraceae root:Engineered:Wastewater 3.0 -family Rhodanobacteraceae root:Host-associated:Plants:Rhizosphere 8.0 -family Rhodanobacteraceae root:Environmental:Terrestrial:Soil 1.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Sediment 3.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 -family Rhodanobacteraceae root:Engineered:Solid waste:Composting 1.0 -family Rhodanobacteraceae root:Engineered:Lab enrichment:Defined media 1.0 -family Rhodanobacteraceae root:Host-associated:Plants:Root 1.0 -family Rhodanobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family Rhodanobacteraceae root:Engineered:Wastewater:Water and sludge 1.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Ice 1.0 -family Rhodanobacteraceae root:Host-associated:Insecta 1.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -family Rhodanobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 2.0 -family Rhodanobacteraceae root:Host-associated:Fungi 1.0 -family Rhodanobacteraceae root:Engineered:Bioremediation 1.0 -family Rhodanobacteraceae root:Environmental:Terrestrial:Volcanic 1.0 family Xanthobacteraceae root:Environmental:Aquatic:Marine 3.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Xanthobacteraceae root:Host-associated:Plants 1.0 @@ -54904,6 +56301,7 @@ family Xanthobacteraceae root:Host-associated:Plants:Rhizosphere 3.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil 26.0 family Xanthobacteraceae root:Environmental:Aquatic:Sediment 4.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 +family Xanthobacteraceae root:Engineered:Lab enrichment 1.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 family Xanthobacteraceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Xanthobacteraceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 3.0 @@ -54912,7 +56310,6 @@ family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Xanthobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Crop 1.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -family Xanthobacteraceae root:Engineered:Lab enrichment 1.0 family Xanthobacteraceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Xanthobacteraceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 family Xanthobacteraceae root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 @@ -54994,6 +56391,13 @@ species Hematodinium sp. SG-2012 root:Environmental:Aquatic:Marine 1.0 species Hematodinium sp. SG-2012 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Hematodinium sp. SG-2012 root:Host-associated:Arthropoda 1.0 species Pectinaria gouldii root:Environmental:Aquatic:Marine 1.0 +genus Oceanibaculum root:Environmental:Aquatic:Marine 1.0 +genus Oceanibaculum root:Engineered:Bioreactor 1.0 +species Oceanibaculum indicum root:Environmental:Aquatic:Marine 1.0 +species Oceanibaculum indicum root:Engineered:Bioreactor 1.0 +species Croceicoccus marinus root:Environmental:Aquatic:Marine 1.0 +species Dietzia alimentaria root:Environmental:Aquatic:Marine 1.0 +species Dietzia alimentaria root:Host-associated:Mammals 1.0 species Calanus glacialis root:Environmental:Aquatic:Marine 3.0 species Calanus glacialis root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Calanus glacialis root:Environmental:Aquatic:Estuary 1.0 @@ -55010,14 +56414,17 @@ genus Paracoccus root:Engineered:Bioreactor 1.0 genus Paracoccus root:Engineered:Wastewater:Activated Sludge 1.0 genus Paracoccus root:Host-associated:Human:Skin 5.0 genus Paracoccus root:Host-associated:Mammals 3.0 +genus Paracoccus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Paracoccus root:Environmental:Terrestrial:Soil 1.0 genus Paracoccus root:Environmental:Aquatic:Marine:Sediment 2.0 -genus Paracoccus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Paracoccus root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Paracoccus root:Host-associated:Porifera 1.0 genus Paracoccus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Paracoccus root:Engineered:Lab enrichment:Defined media 2.0 genus Paracoccus root:Engineered:Wastewater:Industrial wastewater 2.0 +genus Paracoccus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Paracoccus root:Environmental:Aquatic:Marine:Pelagic 1.0 +genus Paracoccus root:Engineered:Built environment 1.0 genus Paracoccus root:Host-associated:Algae 2.0 genus Paracoccus root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 family Thoracosphaeraceae root:Environmental:Aquatic:Marine 2.0 @@ -55078,28 +56485,20 @@ phylum Candidatus Colwellbacteria root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Wildermuthbacteria root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Wildermuthbacteria root:Environmental:Aquatic:Marine:Coastal 1.0 phylum Candidatus Wildermuthbacteria root:Environmental:Aquatic:Marine:Brackish 2.0 -phylum Euglenozoa root:Environmental:Aquatic:Marine 1.0 -phylum Euglenozoa root:Environmental:Aquatic:Marine:Coastal 1.0 -class Candidatus Poseidoniia root:Environmental:Aquatic:Marine 1.0 -class Candidatus Poseidoniia root:Environmental:Aquatic:Marine:Oceanic 1.0 class Ustilaginomycetes root:Environmental:Aquatic:Marine 1.0 class Ustilaginomycetes root:Environmental:Aquatic:Marine:Oceanic 1.0 class Ustilaginomycetes root:Host-associated:Plants 5.0 class Ustilaginomycetes root:Engineered:Bioreactor 1.0 +class Ustilaginomycetes root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 class Ustilaginomycetes root:Environmental:Aquatic:Marine:Brackish 1.0 class Ustilaginomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 class Ustilaginomycetes root:Host-associated:Insecta 1.0 class Ustilaginomycetes root:Environmental:Air 1.0 -order Candidatus Poseidoniales root:Environmental:Aquatic:Marine 1.0 order Ustilaginales root:Environmental:Aquatic:Marine 1.0 order Ustilaginales root:Host-associated:Plants 6.0 order Ustilaginales root:Engineered:Bioreactor 1.0 order Ustilaginales root:Host-associated:Insecta 1.0 order Ustilaginales root:Environmental:Air 1.0 -family Chromulinaceae root:Environmental:Aquatic:Marine 3.0 -family Chromulinaceae root:Environmental:Terrestrial:Soil 1.0 -family Chromulinaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 -family Chromulinaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Spumella root:Environmental:Aquatic:Marine 2.0 genus Spumella root:Environmental:Terrestrial:Soil 1.0 genus Spumella root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -55150,6 +56549,7 @@ species Chaetoceros radicans root:Environmental:Aquatic:Marine:Sediment 1.0 species Chaetoceros radicans root:Environmental:Aquatic:Marine:Coastal 1.0 species Laboea strobila root:Environmental:Aquatic:Marine 1.0 species Tetraselmis subcordiformis root:Environmental:Aquatic:Marine 1.0 +species Tetraselmis subcordiformis root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Striatella unipunctata root:Environmental:Aquatic:Marine 1.0 genus Aeromicrobium root:Environmental:Aquatic:Marine 1.0 genus Aeromicrobium root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -55166,7 +56566,7 @@ species Candidatus Berkiella cookevillensis root:Environmental:Aquatic:Marine 1. species Candidatus Berkiella cookevillensis root:Environmental:Aquatic:Marine:Oceanic 1.0 species Pseudoalteromonas rubra root:Environmental:Aquatic:Marine 1.0 genus Gardnerella root:Environmental:Aquatic:Marine 1.0 -genus Gardnerella root:Host-associated:Human 1.0 +genus Gardnerella root:Host-associated:Human 2.0 genus Gardnerella root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 genus Gardnerella root:Host-associated:Human:Reproductive system:Vagina 13.0 genus Gardnerella root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -55246,6 +56646,20 @@ species bacterium WHC4-8 root:Host-associated:Birds:Digestive system:Digestive t species Marinoscillum pacificum root:Environmental:Aquatic:Marine 1.0 species Leeuwenhoekiella blandensis root:Environmental:Aquatic:Marine 1.0 species Leeuwenhoekiella blandensis root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Perlucidibaca root:Environmental:Aquatic:Marine 1.0 +genus Perlucidibaca root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 +genus Perlucidibaca root:Host-associated:Plants 1.0 +genus Perlucidibaca root:Environmental:Terrestrial:Soil:Agricultural 1.0 +genus Perlucidibaca root:Host-associated:Amphibia 1.0 +genus Perlucidibaca root:Engineered:Wastewater 1.0 +genus Perlucidibaca root:Environmental:Terrestrial:Soil 3.0 +genus Perlucidibaca root:Environmental:Aquatic 1.0 +genus Perlucidibaca root:Environmental:Aquatic:Freshwater:Drinking water 1.0 +genus Perlucidibaca root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 +genus Perlucidibaca root:Engineered:Bioreactor:Continuous culture 2.0 +genus Perlucidibaca root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Perlucidibaca root:Host-associated:Plants:Phylloplane:Endophytes 1.0 +genus Perlucidibaca root:Engineered 2.0 class Raphidophyceae root:Environmental:Aquatic:Marine 2.0 class Raphidophyceae root:Environmental:Aquatic:Marine:Sediment 1.0 class Raphidophyceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -55262,12 +56676,13 @@ species Chaetoceros sp. UNC1202 root:Environmental:Aquatic:Marine 1.0 species Thalassospira sp. TVGB12 root:Environmental:Aquatic:Marine 1.0 species Scytonema tolypothrichoides root:Environmental:Aquatic:Marine 1.0 species Scytonema tolypothrichoides root:Mixed 1.0 +species Scytonema tolypothrichoides root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Scytonema tolypothrichoides root:Environmental:Aquatic:Marine:Coastal 1.0 species Scytonema tolypothrichoides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Scytonema tolypothrichoides root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Scytonema tolypothrichoides root:Environmental:Terrestrial:Soil:Mine 1.0 species uncultivated soil bacterium clone S027 root:Environmental:Aquatic:Marine 1.0 species Acidobacteria bacterium WWH4 root:Environmental:Aquatic:Marine 1.0 +species Acidobacteria bacterium WWH4 root:Environmental:Terrestrial:Soil 1.0 species Acidobacteria bacterium WWH4 root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 genus Pelagomonas root:Environmental:Aquatic:Marine 2.0 genus Pelagomonas root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -55276,12 +56691,12 @@ phylum NKB19 root:Environmental:Aquatic:Marine 2.0 phylum NKB19 root:Host-associated:Plants 1.0 phylum NKB19 root:Engineered:Bioreactor 2.0 phylum NKB19 root:Environmental:Aquatic 1.0 +phylum NKB19 root:Engineered:Lab enrichment 1.0 phylum NKB19 root:Engineered:Solid waste:Composting 1.0 phylum NKB19 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 phylum NKB19 root:Engineered:Wastewater:Industrial wastewater 1.0 phylum NKB19 root:Engineered:Bioreactor:Continuous culture 1.0 phylum NKB19 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -phylum NKB19 root:Engineered:Lab enrichment 1.0 phylum NKB19 root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 species Halomonas salaria root:Environmental:Aquatic:Marine 1.0 species Halomonas salaria root:Host-associated:Plants 1.0 @@ -55304,9 +56719,9 @@ species Pseudomonas sanguinis root:Host-associated:Fish 2.0 species Pseudomonas sanguinis root:Host-associated:Plants 1.0 species Pseudomonas sanguinis root:Engineered:Food production:Dairy products 5.0 species Pseudomonas sanguinis root:Environmental:Terrestrial:Soil 1.0 +species Pseudomonas sanguinis root:Engineered:Lab enrichment 1.0 species Pseudomonas sanguinis root:Environmental:Terrestrial:Soil:Desert 1.0 species Pseudomonas sanguinis root:Engineered:Food production 1.0 -species Pseudomonas sanguinis root:Engineered:Lab enrichment 1.0 species Idiomarina viridans root:Environmental:Aquatic:Marine 1.0 species Thalassospira xiamenensis root:Environmental:Aquatic:Marine 1.0 species Thalassospira xiamenensis root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -55344,8 +56759,7 @@ species Arachis hypogaea root:Environmental:Aquatic:Marine 1.0 species Arachis hypogaea root:Environmental:Aquatic:Marine:Coastal 1.0 species Pentapharsodinium tyrrhenicum root:Environmental:Aquatic:Marine 2.0 species Neoceratium longipes root:Environmental:Aquatic:Marine 1.0 -species Zunongwangia profunda root:Environmental:Aquatic:Marine 3.0 -species Zunongwangia profunda root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 +genus Pelagibaca root:Environmental:Aquatic:Marine 1.0 species Oleiphilus messinensis root:Environmental:Aquatic:Marine 1.0 species Oleiphilus messinensis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species Oleiphilus messinensis root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 2.0 @@ -55458,6 +56872,7 @@ genus Ferrimonas root:Environmental:Aquatic:Marine 1.0 genus Ferrimonas root:Engineered:Food production:Fermented beverages 1.0 genus Candidatus Tenderia root:Environmental:Aquatic:Marine 2.0 genus Candidatus Tenderia root:Engineered:Bioreactor 1.0 +genus Candidatus Tenderia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 genus Candidatus Tenderia root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Candidatus Tenderia root:Environmental:Aquatic:Marine:Sediment 1.0 genus Candidatus Tenderia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -55469,6 +56884,7 @@ species Oscillatoriales cyanobacterium PAL08-3.1 root:Environmental:Aquatic:Mari species Oscillatoriales cyanobacterium PAL08-3.1 root:Mixed 1.0 species Oscillatoriales cyanobacterium PAL08-3.1 root:Environmental:Aquatic:Marine:Sediment 1.0 species Oscillatoriales cyanobacterium PAL08-3.1 root:Host-associated:Porifera 1.0 +species Oscillatoriales cyanobacterium PAL08-3.1 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Propionigenium maris root:Environmental:Aquatic:Marine 1.0 species Propionigenium maris root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Propionigenium maris root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 @@ -55496,6 +56912,8 @@ family Morganellaceae root:Environmental:Aquatic:Lentic:Brackish 1.0 family Morganellaceae root:Host-associated:Plants 1.0 family Morganellaceae root:Host-associated:Mammals 1.0 family Morganellaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Morganellaceae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +family Morganellaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Morganellaceae root:Host-associated:Mammals:Respiratory system:Pulmonary system 1.0 family Morganellaceae root:Host-associated:Invertebrates:Cnidaria:Coral 3.0 family Morganellaceae root:Engineered:Built environment 1.0 @@ -55533,11 +56951,11 @@ phylum BRC1 root:Environmental:Aquatic:Marine 1.0 phylum BRC1 root:Host-associated:Human:Reproductive system:Vagina 1.0 phylum BRC1 root:Host-associated:Plants:Rhizosphere 1.0 phylum BRC1 root:Environmental:Terrestrial:Soil 3.0 +phylum BRC1 root:Engineered:Lab enrichment 1.0 phylum BRC1 root:Engineered:Solid waste:Composting 1.0 phylum BRC1 root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 phylum BRC1 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum BRC1 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -phylum BRC1 root:Engineered:Lab enrichment 1.0 class [Brocadiae] root:Environmental:Aquatic:Marine 1.0 class [Brocadiae] root:Engineered:Bioreactor 1.0 class [Brocadiae] root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -55600,10 +57018,10 @@ genus KSA1 root:Engineered:Bioreactor 1.0 genus KSA1 root:Host-associated:Plants:Rhizosphere 4.0 genus KSA1 root:Environmental:Terrestrial:Soil 9.0 genus KSA1 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus KSA1 root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus KSA1 root:Engineered:Solid waste:Composting 1.0 genus KSA1 root:Environmental:Terrestrial:Soil:Desert 4.0 genus KSA1 root:Host-associated:Plants:Root 1.0 -genus KSA1 root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus KSA1 root:Host-associated 1.0 genus KSA1 root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 genus KSA1 root:Engineered 1.0 @@ -55643,14 +57061,6 @@ species Alexandrium fraterculum root:Environmental:Aquatic:Marine 1.0 species Vicicitus globosus root:Environmental:Aquatic:Marine 1.0 species Tintinnopsis sp. TK-2011a root:Environmental:Aquatic:Marine 1.0 species Pseudoalteromonas sp. UCD-33C root:Environmental:Aquatic:Marine 1.0 -genus Limnobacter root:Environmental:Aquatic:Marine 2.0 -genus Limnobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 -genus Limnobacter root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Limnobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Limnobacter root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -genus Limnobacter root:Environmental:Aquatic:Freshwater:Lotic 1.0 -genus Limnobacter root:Environmental:Aquatic:Marine:Coastal 1.0 -genus Limnobacter root:Engineered:Industrial production 1.0 species Polaribacter lacunae root:Environmental:Aquatic:Marine 1.0 species Flavobacteriales bacterium BRH c54 root:Environmental:Aquatic:Marine 1.0 species Flavobacteriales bacterium BRH c54 root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -55688,7 +57098,7 @@ class Thermodesulfobacteria root:Environmental:Aquatic:Thermal springs:Near-boil class Thermodesulfobacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 order Thermoproteales root:Environmental:Aquatic:Marine 1.0 order Thermoproteales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 10.0 -order Thermoproteales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Thermoproteales root:Environmental:Aquatic:Marine:Sediment 3.0 order Thermoproteales root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 order Thermoproteales root:Environmental:Aquatic:Marine:Coastal 1.0 order Thermoproteales root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -55703,7 +57113,7 @@ order Thermoproteales root:Environmental:Aquatic:Lentic 1.0 order Desulfurococcales root:Environmental:Aquatic:Marine 1.0 order Desulfurococcales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 9.0 order Desulfurococcales root:Mixed 1.0 -order Desulfurococcales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Desulfurococcales root:Environmental:Aquatic:Marine:Sediment 3.0 order Desulfurococcales root:Environmental:Aquatic:Thermal springs 2.0 order Desulfurococcales root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Desulfurococcales root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 @@ -55715,7 +57125,7 @@ order Desulfurococcales root:Environmental:Aquatic:Marine:Hydrothermal vents:Bla order Thermodesulfobacteriales root:Environmental:Aquatic:Marine 1.0 order Thermodesulfobacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 order Thermodesulfobacteriales root:Engineered:Bioreactor 1.0 -order Thermodesulfobacteriales root:Environmental:Aquatic:Marine:Sediment 1.0 +order Thermodesulfobacteriales root:Environmental:Aquatic:Marine:Sediment 2.0 order Thermodesulfobacteriales root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 order Thermodesulfobacteriales root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 order Thermodesulfobacteriales root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 @@ -55726,6 +57136,7 @@ order Fervidicoccales root:Environmental:Aquatic:Marine 1.0 order Fervidicoccales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Thermofilaceae root:Environmental:Aquatic:Marine 1.0 family Thermofilaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 +family Thermofilaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Thermofilaceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 family Thermofilaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 family Thermofilaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 @@ -55733,7 +57144,7 @@ family Thermofilaceae root:Environmental:Aquatic:Thermal springs:Near-boiling (> family Desulfurococcaceae root:Environmental:Aquatic:Marine 1.0 family Desulfurococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 family Desulfurococcaceae root:Mixed 1.0 -family Desulfurococcaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Desulfurococcaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Desulfurococcaceae root:Environmental:Aquatic:Thermal springs 1.0 family Desulfurococcaceae root:Environmental:Aquatic:Marine:Cold seeps 1.0 family Desulfurococcaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 @@ -55741,12 +57152,13 @@ family Desulfurococcaceae root:Environmental:Aquatic:Thermal springs:Near-boilin family Desulfurococcaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 family Desulfurococcaceae root:Environmental:Aquatic:Lentic 1.0 family Pyrodictiaceae root:Environmental:Aquatic:Marine 1.0 +family Pyrodictiaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Pyrodictiaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Pyrodictiaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine 1.0 family Thermodesulfobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 5.0 family Thermodesulfobacteriaceae root:Engineered:Bioreactor 1.0 -family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 family Thermodesulfobacteriaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 @@ -55754,15 +57166,17 @@ family Thermodesulfobacteriaceae root:Environmental:Aquatic:Thermal springs:Near family Thermodesulfobacteriaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 2.0 genus Thermofilum root:Environmental:Aquatic:Marine 1.0 genus Thermofilum root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +genus Thermofilum root:Environmental:Aquatic:Marine:Sediment 1.0 genus Thermofilum root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Thermofilum root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Thermofilum root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Marine 1.0 genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 -genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Marine:Sediment 5.0 +genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Marine:Sediment 6.0 genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Candidatus Caldiarchaeum root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 2.0 genus Candidatus Korarchaeum root:Environmental:Aquatic:Marine 1.0 +genus Candidatus Korarchaeum root:Environmental:Aquatic:Marine:Sediment 1.0 genus Candidatus Korarchaeum root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Ferroglobus root:Environmental:Aquatic:Marine 1.0 genus Ferroglobus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -55770,6 +57184,7 @@ genus Ignisphaera root:Environmental:Aquatic:Marine 1.0 genus Ignisphaera root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 genus Ignisphaera root:Mixed 1.0 genus Staphylothermus root:Environmental:Aquatic:Marine 1.0 +genus Staphylothermus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Staphylothermus root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Caldimicrobium root:Environmental:Aquatic:Marine 1.0 genus Caldimicrobium root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -55779,11 +57194,13 @@ genus Thermodesulfobacterium root:Environmental:Aquatic:Thermal springs:Hot (42- genus Thermodesulfobacterium root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Thermodesulfobacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Candidatus Bathyarchaeota archaeon B24 root:Environmental:Aquatic:Marine 1.0 -species Candidatus Bathyarchaeota archaeon B24 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Candidatus Bathyarchaeota archaeon B24 root:Environmental:Aquatic:Marine:Sediment 3.0 species Archaeoglobus veneficus root:Environmental:Aquatic:Marine 1.0 species Archaeoglobus veneficus root:Environmental:Terrestrial:Soil:Desert 1.0 species Ferroglobus placidus root:Environmental:Aquatic:Marine 1.0 +species Ferroglobus placidus root:Environmental:Aquatic:Marine:Sediment 1.0 species Pseudomonas moraviensis root:Environmental:Aquatic:Marine 1.0 +species Pseudomonas moraviensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Pseudomonas moraviensis root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 species Thermodesulfobacterium geofontis root:Environmental:Aquatic:Marine 1.0 species Thermodesulfobacterium geofontis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -55877,6 +57294,7 @@ genus Pelomonas root:Environmental:Aquatic:Marine 1.0 genus Pelomonas root:Host-associated:Human:Skin 1.0 genus Pelomonas root:Environmental:Terrestrial:Soil 1.0 genus Pelomonas root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 +genus Pelomonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species marine bacterium MSC1 root:Environmental:Aquatic:Marine 1.0 species marine bacterium MSC1 root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 species marine bacterium MSC1 root:Host-associated:Algae:Brown Algae 1.0 @@ -55936,12 +57354,14 @@ genus Candidatus Phytoplasma root:Environmental:Aquatic:Marine:Intertidal zone:C genus Cirratulus root:Environmental:Aquatic:Marine 1.0 genus Cirratulus root:Engineered:Bioreactor 1.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine 3.0 -species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Oceanic 9.0 +species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Oceanic 10.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Estuary:Sediment 1.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 5.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Estuary 2.0 +species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species OM182 bacterium BACL3 MAG-120619-bin3 root:Environmental:Aquatic:Marine:Pelagic 3.0 +species OM182 bacterium BACL3 MAG-120619-bin3 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Cirratulus spectabilis root:Environmental:Aquatic:Marine 1.0 species Cirratulus spectabilis root:Engineered:Bioreactor 1.0 species Cirratulus spectabilis root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -55981,6 +57401,7 @@ family Nectriaceae root:Environmental:Aquatic:Marine 1.0 family Nectriaceae root:Host-associated:Plants 4.0 family Nectriaceae root:Engineered:Wastewater 1.0 family Nectriaceae root:Host-associated:Plants:Rhizosphere 3.0 +family Nectriaceae root:Engineered:Lab enrichment 1.0 family Nectriaceae root:Host-associated:Plants:Root 1.0 family Nectriaceae root:Engineered:Food production 1.0 family Nectriaceae root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -55993,6 +57414,7 @@ genus Fusarium root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Fusarium root:Host-associated:Plants 2.0 genus Fusarium root:Engineered:Wastewater 2.0 genus Fusarium root:Host-associated:Plants:Rhizosphere 6.0 +genus Fusarium root:Engineered:Lab enrichment 1.0 genus Fusarium root:Host-associated:Plants:Root 2.0 genus Fusarium root:Engineered:Food production 1.0 genus Fusarium root:Environmental:Terrestrial:Soil:Clay 1.0 @@ -56070,21 +57492,21 @@ species Vibrio parahaemolyticus root:Environmental:Aquatic:Marine 2.0 species Vibrio parahaemolyticus root:Environmental:Aquatic:Estuary:Sediment 1.0 species Desulfomonile tiedjei root:Environmental:Aquatic:Marine 1.0 species Desulfomonile tiedjei root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +species Desulfomonile tiedjei root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Exanthemachrysis gayraliae root:Environmental:Aquatic:Marine 3.0 order Sarcinochrysidales root:Environmental:Aquatic:Marine 2.0 -species Siluania monomastiga root:Environmental:Aquatic:Marine 3.0 -species Siluania monomastiga root:Environmental:Aquatic:Marine:Oceanic 2.0 species invertebrate environmental sample root:Environmental:Aquatic:Marine 1.0 species invertebrate environmental sample root:Environmental:Aquatic:Marine:Sediment 1.0 species Euplokamis sp. SM-2011a root:Environmental:Aquatic:Marine 1.0 species Alkalimarinus sediminis root:Environmental:Aquatic:Marine 1.0 species Alkalimarinus sediminis root:Environmental:Aquatic:Marine:Pelagic 1.0 species Alkalimarinus sediminis root:Engineered:Food production:Fermented vegetables 1.0 -class Exobasidiomycetes root:Environmental:Aquatic:Marine 1.0 -class Exobasidiomycetes root:Host-associated:Plants 3.0 -class Exobasidiomycetes root:Environmental:Aquatic:Marine:Sediment 1.0 -class Exobasidiomycetes root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -class Exobasidiomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 +species Sagittula stellata root:Environmental:Aquatic:Marine 1.0 +species Sagittula stellata root:Host-associated:Insecta:Digestive system 1.0 +species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine 1.0 +species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Coastal 1.0 +species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Brackish 3.0 class Liliopsida root:Environmental:Aquatic:Marine 3.0 class Liliopsida root:Host-associated:Mammals:Digestive system 2.0 class Liliopsida root:Host-associated:Plants 54.0 @@ -56121,6 +57543,7 @@ species marine gamma proteobacterium HTCC2143 root:Environmental:Aquatic:Marine species marine gamma proteobacterium HTCC2143 root:Environmental:Aquatic:Marine:Oceanic 2.0 species marine gamma proteobacterium HTCC2143 root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species marine gamma proteobacterium HTCC2143 root:Environmental:Aquatic:Marine:Pelagic 1.0 +species marine gamma proteobacterium HTCC2143 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Paraglaciecola psychrophila root:Environmental:Aquatic:Marine 1.0 species Paraglaciecola psychrophila root:Environmental:Aquatic:Marine:Oceanic 2.0 species Paraglaciecola psychrophila root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -56148,11 +57571,11 @@ order SBla14 root:Host-associated:Plants 2.0 order SBla14 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 order SBla14 root:Environmental:Terrestrial:Soil 4.0 order SBla14 root:Environmental:Aquatic 1.0 +order SBla14 root:Engineered:Lab enrichment 1.0 order SBla14 root:Environmental:Terrestrial:Soil:Wetlands 1.0 order SBla14 root:Environmental:Terrestrial:Soil:Sand 1.0 order SBla14 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order SBla14 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -order SBla14 root:Engineered:Lab enrichment 1.0 order SBla14 root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order SBla14 root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 order A21b root:Environmental:Aquatic:Marine 1.0 @@ -56166,25 +57589,25 @@ genus Ochrobactrum root:Environmental:Terrestrial:Geologic 1.0 genus Ochrobactrum root:Host-associated:Plants 1.0 genus Ochrobactrum root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Ochrobactrum root:Environmental:Terrestrial:Soil 3.0 +genus Ochrobactrum root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Ochrobactrum root:Host-associated:Human:Digestive system 1.0 genus Ochrobactrum root:Environmental:Terrestrial:Soil:Desert 1.0 -genus Ochrobactrum root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Dechloromonas root:Environmental:Aquatic:Marine 2.0 genus Dechloromonas root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Dechloromonas root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Dechloromonas root:Engineered:Bioreactor 3.0 genus Dechloromonas root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 genus Dechloromonas root:Environmental:Aquatic:Freshwater:Lotic:Sediment 4.0 -genus Dechloromonas root:Engineered:Wastewater:Activated Sludge 16.0 +genus Dechloromonas root:Engineered:Wastewater:Activated Sludge 17.0 genus Dechloromonas root:Engineered:Wastewater 5.0 genus Dechloromonas root:Environmental:Terrestrial:Soil 4.0 genus Dechloromonas root:Environmental:Aquatic:Marine:Sediment 2.0 +genus Dechloromonas root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Dechloromonas root:Environmental:Aquatic:Sediment 2.0 genus Dechloromonas root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Dechloromonas root:Environmental:Aquatic:Freshwater 1.0 genus Dechloromonas root:Environmental:Aquatic:Thermal springs 1.0 genus Dechloromonas root:Engineered:Wastewater:Industrial wastewater 4.0 -genus Dechloromonas root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 genus Dechloromonas root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Dechloromonas root:Engineered:Bioreactor:Continuous culture 1.0 genus Dechloromonas root:Engineered:Wastewater:Water and sludge 3.0 @@ -56194,6 +57617,7 @@ genus Dechloromonas root:Environmental 1.0 genus Dechloromonas root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 genus Dechloromonas root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 genus Dechloromonas root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 +genus Dechloromonas root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Brackiella root:Environmental:Aquatic:Marine 1.0 genus Oxalobacter root:Environmental:Aquatic:Marine 1.0 genus Oxalobacter root:Environmental:Terrestrial:Soil 1.0 @@ -56305,8 +57729,8 @@ genus Phreatobacter root:Environmental:Aquatic:Marine 1.0 genus Kingella root:Environmental:Aquatic:Marine 1.0 genus Kingella root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Kingella root:Environmental:Terrestrial:Soil 1.0 -genus Kingella root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 genus Kingella root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus Kingella root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 genus Kingella root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 phylum Candidatus Nanohaloarchaeota root:Environmental:Aquatic:Marine 1.0 phylum Candidatus Nanohaloarchaeota root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -56518,6 +57942,7 @@ species Abedinium dasypus root:Environmental:Aquatic:Marine 1.0 species Acinetobacter sp. LCT-H3 root:Environmental:Aquatic:Marine 1.0 species Acinetobacter sp. LCT-H3 root:Engineered:Bioreactor 1.0 species Acinetobacter sp. LCT-H3 root:Engineered:Wastewater 2.0 +species Acinetobacter sp. LCT-H3 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Acinetobacter sp. LCT-H3 root:Engineered:Wastewater:Water and sludge 1.0 species Roseobacter sp. WM2 root:Environmental:Aquatic:Marine 2.0 species Diplonemida sp. 13 RG-2016 root:Environmental:Aquatic:Marine 1.0 @@ -56605,9 +58030,11 @@ order Chlamydomonadales root:Environmental:Aquatic:Marine:Sediment 1.0 order Chlamydomonadales root:Environmental:Aquatic:Freshwater:Lotic 1.0 order Chlamydomonadales root:Environmental:Aquatic:Marine:Intertidal zone 1.0 order Chlamydomonadales root:Environmental:Aquatic:Freshwater:Ice 1.0 +order Chlamydomonadales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Chlamydomonadales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 order Chlamydomonadales root:Environmental:Aquatic:Freshwater:Lotic:Acidic 1.0 order Rhizophydiales root:Environmental:Aquatic:Marine 2.0 +order Rhizophydiales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Rhizophydiaceae root:Environmental:Aquatic:Marine 1.0 family Lacrymariidae root:Environmental:Aquatic:Marine 1.0 family Lacrymariidae root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 @@ -56722,6 +58149,7 @@ genus Herbaspirillum root:Environmental:Aquatic:Marine 1.0 genus Herbaspirillum root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Herbaspirillum root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Herbaspirillum root:Environmental:Aquatic:Estuary 1.0 +genus Herbaspirillum root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Gramella root:Environmental:Aquatic:Marine 1.0 genus Gramella root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Gramella root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -56760,9 +58188,9 @@ genus Sediminispirochaeta root:Environmental:Aquatic:Marine 1.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Sediminispirochaeta root:Engineered:Lab enrichment 1.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Cold seeps 2.0 -genus Sediminispirochaeta root:Engineered:Lab enrichment 1.0 genus Sediminispirochaeta root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Sediminispirochaeta root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 2.0 genus Lysinibacillus root:Environmental:Aquatic:Marine 1.0 @@ -56796,6 +58224,7 @@ species Methylorhabdus multivorans root:Environmental:Aquatic:Marine 1.0 order Symphyacanthida root:Environmental:Aquatic:Marine 1.0 order Holacanthida root:Environmental:Aquatic:Marine 1.0 order Brassicales root:Environmental:Aquatic:Marine 1.0 +order Brassicales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order Brassicales root:Host-associated:Mammals:Digestive system:Stomach 1.0 family Phyllostauridae root:Environmental:Aquatic:Marine 1.0 family Acanthometridae root:Environmental:Aquatic:Marine 1.0 @@ -56958,6 +58387,7 @@ genus Alkalimarinus root:Environmental:Aquatic 1.0 genus Alkalimarinus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Alkalimarinus root:Host-associated:Cnidaria 1.0 order Corticiales root:Environmental:Aquatic:Marine 1.0 +order Corticiales root:Engineered:Lab enrichment 1.0 family Corticiaceae root:Environmental:Aquatic:Marine 1.0 genus Hyphodontia root:Environmental:Aquatic:Marine 1.0 genus Itersonilia root:Environmental:Aquatic:Marine 1.0 @@ -57039,6 +58469,7 @@ species Rhodoplanes sp. Z2-YC6860 root:Environmental:Terrestrial:Soil 8.0 species Rhodoplanes sp. Z2-YC6860 root:Environmental:Aquatic:Marine:Sediment 1.0 species Rhodoplanes sp. Z2-YC6860 root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Rhodoplanes sp. Z2-YC6860 root:Host-associated:Porifera 1.0 +species Rhodoplanes sp. Z2-YC6860 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Rhodoplanes sp. Z2-YC6860 root:Host-associated:Plants:Root 1.0 species Rhodoplanes sp. Z2-YC6860 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 species Rhodoplanes sp. Z2-YC6860 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -57050,9 +58481,9 @@ species bacterium enrichment culture clone 25(2013) root:Environmental:Aquatic:M species bacterium enrichment culture clone 25(2013) root:Environmental:Aquatic:Marine:Coastal:Sediment 6.0 species bacterium enrichment culture clone 25(2013) root:Environmental:Aquatic:Marine:Sediment 5.0 species bacterium enrichment culture clone 25(2013) root:Host-associated:Porifera 1.0 +species bacterium enrichment culture clone 25(2013) root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture clone 25(2013) root:Environmental:Aquatic:Marine:Coastal 2.0 species bacterium enrichment culture clone 25(2013) root:Host-associated:Invertebrates:Echinodermata 1.0 -species bacterium enrichment culture clone 25(2013) root:Engineered:Lab enrichment 1.0 species bacterium BW3SW37 root:Environmental:Aquatic:Marine 1.0 species bacterium BW3SW37 root:Environmental:Aquatic:Estuary:Sediment 1.0 species bacterium BW3SW37 root:Mixed 1.0 @@ -57067,6 +58498,7 @@ species Aliikangiella marina root:Mixed 1.0 species Aliikangiella marina root:Environmental:Aquatic:Marine:Sediment 1.0 species Aliikangiella marina root:Host-associated:Porifera 1.0 species Aliikangiella marina root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +species Aliikangiella marina root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Environmental:Aquatic:Marine 1.0 species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Host-associated:Plants 1.0 species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Mixed 3.0 @@ -57075,6 +58507,7 @@ species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Ho species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Environmental:Aquatic:Marine:Coastal 1.0 species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Environmental:Aquatic:Marine:Brackish 1.0 +species alpha proteobacterium endosymbiont 2 of Inanidrilus makropetalos root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Romeria sp. LEGE 06013 root:Environmental:Aquatic:Marine 1.0 species Romeria sp. LEGE 06013 root:Environmental:Aquatic:Marine:Sediment 1.0 species Romeria sp. LEGE 06013 root:Host-associated:Porifera 1.0 @@ -57096,7 +58529,7 @@ genus Rhodovulum root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Rhodovulum root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Rhodovulum root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 species unculturable Mariana archaeon no. 15 root:Environmental:Aquatic:Marine 1.0 -species unculturable Mariana archaeon no. 15 root:Environmental:Aquatic:Marine:Sediment 5.0 +species unculturable Mariana archaeon no. 15 root:Environmental:Aquatic:Marine:Sediment 7.0 species unculturable Mariana archaeon no. 15 root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 2.0 species Lewinella nigricans root:Environmental:Aquatic:Marine 1.0 species Lewinella nigricans root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 @@ -57134,15 +58567,12 @@ species Synechococcus sp. UW179 root:Environmental:Aquatic:Marine 1.0 species Sinimarinibacterium flocculans root:Environmental:Aquatic:Marine 1.0 species Mesostigma viride root:Environmental:Aquatic:Marine 1.0 species Alteromonas sp. D root:Environmental:Aquatic:Marine 1.0 -species bacterium AMSU root:Environmental:Aquatic:Marine 1.0 -species bacterium AMSU root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 -species bacterium AMSU root:Environmental:Aquatic:Marine:Coastal:Sediment 3.0 -species bacterium AMSU root:Environmental:Aquatic:Marine:Sediment 2.0 species bacterium N2yML4 root:Environmental:Aquatic:Marine 1.0 species Ralstonia sp. enrichment culture clone Pn7 1.7 root:Environmental:Aquatic:Marine 1.0 species Aureitalea marina root:Environmental:Aquatic:Marine 1.0 species Aureitalea marina root:Environmental:Aquatic:Marine:Sediment 2.0 species Aureitalea marina root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 +species Aureitalea marina root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species unidentified microorganism root:Environmental:Aquatic:Marine 1.0 species unidentified microorganism root:Mixed 1.0 species unidentified microorganism root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -57186,6 +58616,7 @@ species planctomycete DDD3G8 root:Environmental:Aquatic:Marine 1.0 species planctomycete DDD3G8 root:Environmental:Aquatic 1.0 species planctomycete DDD3G8 root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species planctomycete DDD3G8 root:Environmental:Aquatic:Marine:Coastal 1.0 +species planctomycete DDD3G8 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Aureicoccus marinus root:Environmental:Aquatic:Marine 1.0 species Aureicoccus marinus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Bacillus sp. root:Environmental:Aquatic:Marine 1.0 @@ -57195,13 +58626,16 @@ species planctomycete MS30D1 root:Environmental:Aquatic:Marine 1.0 species planctomycete MS30D1 root:Environmental:Aquatic 1.0 species Pyruvatibacter mobilis root:Environmental:Aquatic:Marine 1.0 order Brevinematales root:Host-associated:Fish 1.0 +order Brevinematales root:Host-associated:Fish:Digestive system 1.0 order Brevinematales root:Host-associated:Fish:Digestive system:Foregut 1.0 order Brevinematales root:Host-associated:Fish:Digestive system:Intestine 1.0 family Brevinemataceae root:Host-associated:Fish 1.0 +family Brevinemataceae root:Host-associated:Fish:Digestive system 1.0 family Brevinemataceae root:Host-associated:Fish:Digestive system:Foregut 1.0 family Brevinemataceae root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Candidatus Bacilloplasma root:Host-associated:Fish 1.0 genus Brevinema root:Host-associated:Fish 1.0 +genus Brevinema root:Host-associated:Fish:Digestive system 1.0 genus Brevinema root:Host-associated:Fish:Digestive system:Foregut 1.0 genus Brevinema root:Host-associated:Fish:Digestive system:Intestine 1.0 species Chloromonas perforata root:Host-associated:Fish 1.0 @@ -57214,8 +58648,8 @@ species Candidatus Electronema nielsenii root:Environmental:Aquatic:Marine:Sedim species Candidatus Electronema nielsenii root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 genus Pasteurella root:Host-associated:Fish 1.0 genus Pasteurella root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -genus Pasteurella root:Engineered:Lab Synthesis:Genetic cross 1.0 genus Pasteurella root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Pasteurella root:Engineered:Lab Synthesis:Genetic cross 1.0 genus Pasteurella root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 species Pseudoalteromonas eikelboomii root:Host-associated:Fish 1.0 species Pseudoalteromonas eikelboomii root:Environmental:Aquatic 1.0 @@ -57223,8 +58657,8 @@ species Pseudoalteromonas eikelboomii root:Environmental:Aquatic:Marine:Coastal species Pasteurella multocida root:Host-associated:Fish 1.0 species Pasteurella multocida root:Host-associated:Mammals 1.0 species Pasteurella multocida root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 2.0 -species Pasteurella multocida root:Engineered:Lab Synthesis:Genetic cross 1.0 species Pasteurella multocida root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Pasteurella multocida root:Engineered:Lab Synthesis:Genetic cross 1.0 species Pasteurella multocida root:Host-associated:Mammals:Respiratory system 1.0 species Pasteurella multocida root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 species Vibrio fortis root:Host-associated:Fish 2.0 @@ -57441,10 +58875,11 @@ species Marenzelleria viridis root:Environmental:Aquatic:Estuary 1.0 species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Estuary:Sediment 1.0 -species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Marine:Sediment 20.0 +species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 +species Dehalococcoidia bacterium DscP2 root:Environmental:Aquatic:Marine:Sediment 21.0 species Dehalococcoidia bacterium DscP2 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Aerophobetes bacterium AeroCD12-1 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -species Aerophobetes bacterium AeroCD12-1 root:Environmental:Aquatic:Marine:Sediment 4.0 +species Aerophobetes bacterium AeroCD12-1 root:Environmental:Aquatic:Marine:Sediment 6.0 species Aerophobetes bacterium AeroCD12-1 root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Candidatus Hepatoplasma crinochetorum root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Elusimicrobia bacterium GWA2 69 24 root:Environmental:Aquatic:Marine:Oceanic:Sediment 2.0 @@ -57512,7 +58947,7 @@ species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Marine: species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Marine:Sediment 3.0 species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Sediment 1.0 species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Planctomycetes bacterium ADurb.Bin126 root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 species Firmicutes bacterium root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Firmicutes bacterium root:Host-associated:Mammals:Digestive system 1.0 species Firmicutes bacterium root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -57523,7 +58958,7 @@ species bacterium enrichment culture clone 58 root:Engineered:Bioreactor:Continu species bacterium enrichment culture clone 58 root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Rickettsiaceae root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 family Rickettsiaceae root:Environmental:Aquatic:Marine:Coastal 1.0 -family Rickettsiaceae root:Host-associated:Insecta:Digestive system 1.0 +family Rickettsiaceae root:Host-associated:Insecta:Digestive system 2.0 family Rickettsiaceae root:Environmental:Aquatic:Marine:Brackish 1.0 family Rickettsiaceae root:Environmental:Aquatic:Marine:Pelagic 1.0 family Rickettsiaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 @@ -57535,7 +58970,7 @@ species Nitrospina sp. SPGG3 root:Environmental:Aquatic:Marine:Oceanic:Sediment species Nitrospina sp. SPGG3 root:Environmental:Aquatic:Marine:Sediment 1.0 species Nitrospina sp. SPGG3 root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 species candidate division NC10 bacterium SPGG6 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -species candidate division NC10 bacterium SPGG6 root:Environmental:Aquatic:Marine:Sediment 2.0 +species candidate division NC10 bacterium SPGG6 root:Environmental:Aquatic:Marine:Sediment 3.0 species candidate division NC10 bacterium SPGG6 root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 species candidate division NC10 bacterium SPGG6 root:Environmental:Aquatic:Marine:Oceanic:Aphotic zone 1.0 species bacterium SM23 31 root:Environmental:Aquatic:Marine:Oceanic:Sediment 3.0 @@ -57582,11 +59017,11 @@ order iii1-15 root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 order iii1-15 root:Host-associated:Porifera 1.0 order iii1-15 root:Environmental:Terrestrial:Soil:Wetlands 2.0 order iii1-15 root:Environmental:Terrestrial:Soil:Grasslands 11.0 +order iii1-15 root:Host-associated:Plants:Rhizosphere:Soil 15.0 order iii1-15 root:Environmental:Aquatic:Freshwater 1.0 order iii1-15 root:Engineered:Solid waste:Composting 2.0 order iii1-15 root:Environmental:Terrestrial:Soil:Desert 3.0 order iii1-15 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -order iii1-15 root:Host-associated:Plants:Rhizosphere:Soil 15.0 order iii1-15 root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 order iii1-15 root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 order iii1-15 root:Host-associated 1.0 @@ -57604,25 +59039,12 @@ order MND1 root:Environmental:Terrestrial:Soil:Contaminated 1.0 order MND1 root:Host-associated:Plants:Rhizosphere 3.0 order MND1 root:Environmental:Terrestrial:Soil 7.0 order MND1 root:Environmental:Terrestrial:Soil:Wetlands 1.0 -order MND1 root:Environmental:Terrestrial:Soil:Desert 1.0 order MND1 root:Host-associated:Plants:Rhizosphere:Soil 2.0 +order MND1 root:Environmental:Terrestrial:Soil:Desert 1.0 order MND1 root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order MND1 root:Host-associated:Insecta:Digestive system 1.0 order MND1 root:Environmental:Terrestrial:Soil:Boreal forest 1.0 order MND1 root:Environmental 2.0 -genus Perlucidibaca root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 -genus Perlucidibaca root:Host-associated:Plants 1.0 -genus Perlucidibaca root:Environmental:Terrestrial:Soil:Agricultural 1.0 -genus Perlucidibaca root:Host-associated:Amphibia 1.0 -genus Perlucidibaca root:Engineered:Wastewater 1.0 -genus Perlucidibaca root:Environmental:Terrestrial:Soil 3.0 -genus Perlucidibaca root:Environmental:Aquatic 1.0 -genus Perlucidibaca root:Environmental:Aquatic:Freshwater:Drinking water 1.0 -genus Perlucidibaca root:Environmental:Terrestrial:Soil:Oil-contaminated 3.0 -genus Perlucidibaca root:Engineered:Bioreactor:Continuous culture 2.0 -genus Perlucidibaca root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Perlucidibaca root:Host-associated:Plants:Phylloplane:Endophytes 1.0 -genus Perlucidibaca root:Engineered 2.0 genus SHD-14 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus SHD-14 root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus SHD-14 root:Environmental:Terrestrial:Soil 1.0 @@ -57694,11 +59116,13 @@ class Lecanoromycetes root:Environmental:Aquatic:Marine:Coastal 1.0 class Lecanoromycetes root:Host-associated:Plants:Root 2.0 class Lecanoromycetes root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 class Lecanoromycetes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 +class Lecanoromycetes root:Host-associated:Fungi 1.0 order Sordariales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Sordariales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Sordariales root:Host-associated:Plants 2.0 order Sordariales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Sordariales root:Environmental:Terrestrial:Soil 1.0 +order Sordariales root:Engineered:Lab enrichment 1.0 order Sordariales root:Host-associated:Plants:Root 1.0 order Microascales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Microascales root:Environmental:Terrestrial:Soil 1.0 @@ -57716,9 +59140,10 @@ order Peltigerales root:Environmental:Aquatic:Freshwater 1.0 order Russulales root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 order Russulales root:Environmental:Terrestrial:Soil:Forest soil 2.0 order Russulales root:Host-associated:Plants 2.0 -order Russulales root:Environmental:Terrestrial:Soil 1.0 +order Russulales root:Environmental:Terrestrial:Soil 2.0 order Russulales root:Environmental:Aquatic:Marine:Sediment 1.0 order Russulales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Russulales root:Host-associated:Plants:Root 1.0 order Russulales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Russulales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Russulales root:Environmental:Air 1.0 @@ -57771,8 +59196,8 @@ species Echinococcus canadensis root:Host-associated:Plants 1.0 species Echinococcus canadensis root:Mixed 1.0 species Echinococcus canadensis root:Engineered:Food production:Fermented beverages 1.0 species Echinococcus canadensis root:Environmental:Terrestrial:Soil 1.0 -species Echinococcus canadensis root:Environmental:Aquatic:Freshwater 1.0 species Echinococcus canadensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Echinococcus canadensis root:Environmental:Aquatic:Freshwater 1.0 species Haloaleurodiscus mangrovei root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Reticulascus tulasneorum root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species Reticulascus tulasneorum root:Environmental:Terrestrial:Soil 2.0 @@ -57795,7 +59220,7 @@ species Thiohalospira halophila root:Environmental:Aquatic:Non-marine Saline and species Stenotrophomonas sp. enrichment culture clone Y007 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Sediment 8.0 +genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Sediment 10.0 genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Candidatus Latescibacter root:Environmental:Aquatic:Marine:Oceanic:Benthic 2.0 genus Dehalobium root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -57825,9 +59250,9 @@ family Trueperaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Trueperaceae root:Engineered:Bioreactor 1.0 family Trueperaceae root:Mixed 1.0 family Trueperaceae root:Environmental:Terrestrial:Soil 2.0 +family Trueperaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Trueperaceae root:Engineered:Solid waste:Composting 3.0 family Trueperaceae root:Environmental:Terrestrial:Soil:Desert 1.0 -family Trueperaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Trueperaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 family Trueperaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 order YLA114 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 @@ -57921,9 +59346,6 @@ species Candidatus Thiopilula aggregata root:Environmental:Aquatic:Marine:Cold s species bacterium enrichment culture clone 56 root:Environmental:Aquatic:Marine:Oceanic:Sediment 1.0 species bacterium enrichment culture clone 56 root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 species bacterium enrichment culture clone 56 root:Environmental:Aquatic:Marine:Sediment 3.0 -species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Coastal 1.0 -species Muricauda zhangzhouensis root:Environmental:Aquatic:Marine:Brackish 3.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A10 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Pelagibacteraceae bacterium ETNP-OMZ-SAG-A10 root:Environmental:Aquatic:Marine:Pelagic 1.0 phylum Rhodophyta root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -57964,10 +59386,10 @@ genus Luteimonas root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Luteimonas root:Engineered:Wastewater:Activated Sludge 1.0 genus Luteimonas root:Host-associated:Mammals 1.0 genus Luteimonas root:Environmental:Terrestrial:Soil 2.0 +genus Luteimonas root:Engineered:Lab enrichment 1.0 genus Luteimonas root:Engineered:Solid waste:Composting 3.0 genus Luteimonas root:Environmental:Terrestrial:Deep subsurface 1.0 genus Luteimonas root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -genus Luteimonas root:Engineered:Lab enrichment 1.0 genus Luteimonas root:Engineered:Biotransformation 1.0 genus Luteimonas root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 species Marinobacter xiamenensis root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -57991,7 +59413,7 @@ species Lewinella persica root:Host-associated:Fish:Digestive system:Foregut 1.0 species Lewinella persica root:Host-associated:Fish:Digestive system:Intestine 1.0 species Haplogonaria sp. 'schillingi' UJ-2011 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Verrucomicrobia bacterium SCGC AAA164-P11 root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Rhodobacteraceae bacterium REDSEA-S11 B6 root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Rhodobacteraceae bacterium REDSEA-S11 B6 root:Environmental:Aquatic:Marine:Oceanic 2.0 species Bathycoccus sp. TOSAG39-1 root:Environmental:Aquatic:Marine:Oceanic 1.0 species Disolenia tenuissima root:Environmental:Aquatic:Marine:Oceanic 1.0 species Gigartacon fragilis root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -58042,10 +59464,10 @@ genus Cloacibacterium root:Engineered:Bioreactor 1.0 genus Cloacibacterium root:Engineered:Wastewater:Activated Sludge 6.0 genus Cloacibacterium root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Cloacibacterium root:Environmental:Terrestrial:Soil 3.0 +genus Cloacibacterium root:Engineered:Lab enrichment 1.0 genus Cloacibacterium root:Engineered:Wastewater:Industrial wastewater 2.0 -genus Cloacibacterium root:Engineered:Wastewater:Water and sludge 1.0 +genus Cloacibacterium root:Engineered:Wastewater:Water and sludge 2.0 genus Cloacibacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Cloacibacterium root:Engineered:Lab enrichment 1.0 genus Cloacibacterium root:Engineered:Biotransformation 1.0 genus Cloacibacterium root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Cloacibacterium root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 @@ -58054,7 +59476,23 @@ species Pseudoscourfieldia marina root:Environmental:Aquatic:Marine:Oceanic 1.0 species Pseudoscourfieldia marina root:Host-associated:Porifera 1.0 species Salegentibacter salegens root:Environmental:Aquatic:Marine:Oceanic 1.0 species Salegentibacter mishustinae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Dermacoccaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Dermacoccaceae root:Host-associated:Human:Skin 1.0 +family Dermacoccaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Croceicoccus root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Croceicoccus root:Environmental:Aquatic:Estuary 1.0 +genus Halobacillus root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Halobacillus root:Environmental:Aquatic:Sediment 1.0 +genus Kytococcus root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Chromohalobacter root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Chromohalobacter root:Engineered:Wastewater 1.0 +genus Chromohalobacter root:Environmental:Terrestrial:Soil:Crop 1.0 +species Kytococcus sedentarius root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Salinicoccus roseus root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Caulobacter sp. JP68 root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Caulobacter sp. JP68 root:Environmental:Aquatic:Marine:Brackish 1.0 family Oleiphilaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 +family Oleiphilaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 family Oleiphilaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Oleiphilaceae root:Environmental:Aquatic:Marine:Sediment 5.0 family Oleiphilaceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -58066,6 +59504,37 @@ species Salinisphaera japonica root:Environmental:Aquatic:Marine:Oceanic 1.0 species Psychrobacter piscidermidis root:Environmental:Aquatic:Marine:Oceanic 1.0 species Psychrobacter piscidermidis root:Environmental:Aquatic:Marine:Marginal Sea 1.0 genus Palleronia root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Thermus root:Environmental:Aquatic:Marine:Oceanic 1.0 +genus Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 11.0 +genus Thermus root:Environmental:Aquatic:Estuary:Sediment 2.0 +genus Thermus root:Engineered:Bioreactor 20.0 +genus Thermus root:Engineered:Wastewater:Activated Sludge 1.0 +genus Thermus root:Mixed 1.0 +genus Thermus root:Engineered:Food production:Fermented beverages 2.0 +genus Thermus root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 +genus Thermus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30.0 +genus Thermus root:Host-associated:Human:Digestive system:Oral 1.0 +genus Thermus root:Engineered:Food production:Dairy products 1.0 +genus Thermus root:Environmental:Terrestrial:Soil 2.0 +genus Thermus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Thermus root:Environmental:Aquatic:Thermal springs 2.0 +genus Thermus root:Engineered:Solid waste:Composting 6.0 +genus Thermus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +genus Thermus root:Engineered:Food production 1.0 +genus Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 +genus Thermus root:Environmental:Aquatic:Estuary 19.0 +genus Thermus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 +genus Thermus root:Environmental:Aquatic:Thermal springs:Sediment 4.0 +genus Thermus root:Engineered:Built environment 1.0 +genus Thermus root:Engineered:Food production:Fermented vegetables 1.0 +genus Thermus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 +species Richelia intracellularis root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Streptococcus varani root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Streptococcus varani root:Host-associated:Mammals 1.0 +species Synechococcus sp. CB0205 root:Environmental:Aquatic:Marine:Oceanic 1.0 +species Synechococcus sp. CB0205 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 +species Synechococcus sp. CB0205 root:Environmental:Aquatic:Estuary 1.0 +species Synechococcus sp. CB0205 root:Environmental:Aquatic:Marine:Brackish 1.0 genus Rimostrombidium root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Rimostrombidium root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Rimostrombidium root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -58098,8 +59567,10 @@ genus Thermomarinilinea root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Thermomarinilinea root:Environmental:Aquatic:Marine:Sediment 1.0 species Photobacterium leiognathi root:Environmental:Aquatic:Marine:Oceanic 2.0 species Photobacterium leiognathi root:Engineered:Food production 1.0 +species Photobacterium leiognathi root:Host-associated:Fish:Digestive system 1.0 species Reichenbachiella sp. DC003 root:Environmental:Aquatic:Marine:Oceanic 1.0 -class Choanoflagellata root:Environmental:Aquatic:Marine:Oceanic 1.0 +order Copelata root:Environmental:Aquatic:Marine:Oceanic 1.0 +order Copelata root:Environmental:Aquatic:Marine:Coastal 1.0 family Protaspidae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Triparmaceae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Triparmaceae root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -58170,8 +59641,9 @@ species Verrucomicrobia bacterium ADurb.Bin474 root:Environmental:Aquatic:Marine species Verrucomicrobia bacterium ADurb.Bin474 root:Engineered:Biogas plant:Wet fermentation 1.0 species Verrucomicrobia bacterium ADurb.Bin474 root:Environmental:Aquatic:Marine:Coastal 1.0 species Verrucomicrobia bacterium ADurb.Bin474 root:Environmental:Aquatic:Freshwater:Drinking water 1.0 -species Verrucomicrobia bacterium ADurb.Bin474 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +species Verrucomicrobia bacterium ADurb.Bin474 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 2.0 species Verrucomicrobia bacterium ADurb.Bin474 root:Engineered:Wastewater:Water and sludge 1.0 +species Verrucomicrobia bacterium ADurb.Bin474 root:Host-associated:Insecta 1.0 species Planktothrix rubescens root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Metschnikowia root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Metschnikowia root:Engineered:Food production:Fermented beverages 1.0 @@ -58250,6 +59722,7 @@ genus Alcaligenes root:Host-associated:Plants:Root 2.0 genus Alcaligenes root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Alcaligenes root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Alcaligenes root:Host-associated:Fish:Digestive system:Intestine 1.0 +genus Alcaligenes root:Engineered:Built environment 1.0 genus Alcaligenes root:Environmental:Aquatic:Aquaculture 1.0 genus Alcaligenes root:Host-associated:Fish:Skin 1.0 species Alcaligenes faecalis root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -58323,7 +59796,6 @@ species CandidatusPortiera lividum root:Environmental:Aquatic:Marine:Oceanic 1.0 species CandidatusPortiera lividum root:Engineered:Bioremediation 1.0 species Paraglaciecola arctica root:Environmental:Aquatic:Marine:Oceanic 1.0 species Meuniera membranacea root:Environmental:Aquatic:Marine:Oceanic 1.0 -species Brooksia rostrata root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Haplosporidia root:Environmental:Aquatic:Marine:Oceanic 1.0 phylum Haplosporidia root:Environmental:Aquatic:Marine:Sediment 2.0 species eukaryote clone OLI11008 root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -58339,6 +59811,7 @@ species Pseudozyma hubeiensis SY62 root:Environmental:Aquatic:Marine:Coastal 1.0 species Pseudozyma hubeiensis SY62 root:Environmental:Aquatic:Marine:Brackish 1.0 species Pseudozyma hubeiensis SY62 root:Host-associated:Insecta 1.0 order Ephemeroptera root:Environmental:Aquatic:Marine:Oceanic 1.0 +order Ephemeroptera root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 order Ephemeroptera root:Host-associated:Arthropoda 1.0 family Rhopalonematidae root:Environmental:Aquatic:Marine:Oceanic 1.0 family Rhopalonematidae root:Host-associated:Arthropoda 1.0 @@ -58347,6 +59820,7 @@ genus Hematodinium root:Host-associated:Arthropoda 1.0 species Acidithiobacillus thiooxidans root:Environmental:Aquatic:Marine:Oceanic 1.0 species Acidithiobacillus thiooxidans root:Host-associated:Human 1.0 species Acidithiobacillus thiooxidans root:Host-associated:Human:Skin 1.0 +species Acidithiobacillus thiooxidans root:Engineered:Food production:Fermented beverages 1.0 species Acidithiobacillus thiooxidans root:Environmental:Aquatic:Freshwater 1.0 species Acidithiobacillus thiooxidans root:Engineered:Lab enrichment:Defined media 1.0 species Acidithiobacillus thiooxidans root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 @@ -58358,7 +59832,7 @@ species Ichthyosporea sp. NK52 root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Tolumonas root:Environmental:Aquatic:Marine:Oceanic 1.0 genus Tolumonas root:Engineered:Wastewater:Activated Sludge 1.0 genus Tolumonas root:Engineered:Food production:Fermented beverages 1.0 -genus Tolumonas root:Engineered:Wastewater:Water and sludge 1.0 +genus Tolumonas root:Engineered:Wastewater:Water and sludge 2.0 species Marinobacter punicea root:Environmental:Aquatic:Marine:Oceanic 1.0 species Marinobacter punicea root:Host-associated:Plants 1.0 species Marinobacter punicea root:Environmental:Terrestrial:Soil 1.0 @@ -58409,6 +59883,7 @@ species Microcystis sp. SAG 43.90 root:Engineered:Food production:Fermented beve species Microcystis sp. SAG 43.90 root:Engineered:Wastewater 1.0 species Microcystis sp. SAG 43.90 root:Environmental:Aquatic:Marine:Sediment 1.0 species Microcystis sp. SAG 43.90 root:Host-associated:Insecta:Digestive system 1.0 +species Microcystis sp. SAG 43.90 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Microcystis sp. SAG 43.90 root:Host-associated:Insecta 1.0 species Prototheca wickerhamii root:Environmental:Aquatic:Marine:Oceanic 1.0 species Colwellia sp. 1tb5 root:Environmental:Aquatic:Marine:Oceanic 1.0 @@ -58422,8 +59897,8 @@ species Owenweeksia tractuosa root:Environmental:Aquatic:Marine:Oceanic 1.0 species Psychroflexus pectinivorans root:Environmental:Aquatic:Marine:Oceanic 1.0 species Turicibacter vaginalis root:Host-associated:Mammals:Digestive system 2.0 species Turicibacter vaginalis root:Engineered:Bioreactor 1.0 -species Turicibacter vaginalis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Turicibacter vaginalis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Turicibacter vaginalis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 species Turicibacter vaginalis root:Environmental:Terrestrial:Soil:Sand 1.0 species SMB53 perfringens root:Host-associated:Mammals:Digestive system 1.0 species SMB53 perfringens root:Engineered:Bioreactor 1.0 @@ -58437,8 +59912,12 @@ genus Dubosiella root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Dubosiella root:Host-associated:Mammals 1.0 genus Dubosiella root:Environmental:Aquatic:Marine:Coastal 1.0 genus Dubosiella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Dubosiella root:Host-associated:Mammals:Digestive system:Foregut 1.0 genus Muribaculum root:Host-associated:Mammals:Digestive system 1.0 +genus Muribaculum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Muribaculum root:Host-associated:Mammals:Digestive system:Foregut 1.0 species [Clostridium] bolteae root:Host-associated:Mammals:Digestive system 1.0 +species [Clostridium] bolteae root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species bacterium NLAE-zl-G327 root:Host-associated:Mammals:Digestive system 1.0 species bacterium NLAE-zl-G292 root:Host-associated:Mammals:Digestive system 1.0 genus Actinobacillus root:Host-associated:Mammals:Digestive system 3.0 @@ -58453,7 +59932,8 @@ species Streptococcus suis root:Engineered:Wastewater:Activated Sludge 3.0 species Streptococcus suis root:Engineered:Wastewater 1.0 species Streptococcus suis root:Engineered:Food production:Dairy products 1.0 species Streptococcus suis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Streptococcus suis root:Engineered:Wastewater:Water and sludge 1.0 +species Streptococcus suis root:Host-associated:Fish:Digestive system 1.0 +species Streptococcus suis root:Engineered:Wastewater:Water and sludge 2.0 species Streptococcus suis root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 species Prevotella sp. 310-5 root:Host-associated:Mammals:Digestive system 2.0 species Prevotella sp. 310-5 root:Host-associated:Fish:Digestive system 1.0 @@ -58489,12 +59969,12 @@ order Poales root:Environmental:Aquatic:Marine:Sediment 3.0 order Poales root:Engineered:Biogas plant:Wet fermentation 2.0 order Poales root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Poales root:Host-associated:Birds:Digestive system:Ceca 1.0 +order Poales root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Poales root:Environmental:Aquatic:Freshwater 1.0 order Poales root:Environmental:Aquatic:Marine:Coastal 1.0 order Poales root:Host-associated:Plants:Root 2.0 order Poales root:Engineered:Food production 1.0 order Poales root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 -order Poales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Poales root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 order Poales root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 order Poales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -58504,6 +59984,7 @@ order Poales root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 order Poales root:Host-associated:Animal:Digestive system:Fecal 1.0 order Poales root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 order Poales root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +order Poales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 order Testudines root:Host-associated:Mammals:Digestive system 2.0 order Testudines root:Host-associated:Human 1.0 order Testudines root:Mixed 1.0 @@ -58530,19 +60011,20 @@ family Poaceae root:Host-associated:Plants:Phylloplane 6.0 family Poaceae root:Environmental:Terrestrial:Soil 3.0 family Poaceae root:Environmental:Aquatic:Marine:Sediment 2.0 family Poaceae root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Poaceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Poaceae root:Host-associated:Human:Digestive system 1.0 family Poaceae root:Environmental:Aquatic:Freshwater 1.0 family Poaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Poaceae root:Host-associated:Plants:Root 1.0 family Poaceae root:Engineered:Food production 1.0 family Poaceae root:Environmental:Terrestrial:Deep subsurface 1.0 -family Poaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Poaceae root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 family Poaceae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 family Poaceae root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 family Poaceae root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 family Poaceae root:Host-associated:Animal:Digestive system:Fecal 1.0 family Poaceae root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +family Poaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 family Emydidae root:Host-associated:Mammals:Digestive system 1.0 family Emydidae root:Host-associated:Human 1.0 family Emydidae root:Mixed 1.0 @@ -58581,24 +60063,26 @@ species Triticum aestivum (bread wheat) root:Host-associated:Mammals:Gastrointes species Triticum aestivum (bread wheat) root:Host-associated:Fish:Digestive system:Intestine 1.0 species Triticum aestivum (bread wheat) root:Engineered:Built environment 1.0 species Triticum aestivum (bread wheat) root:Host-associated:Mammals:Skin 1.0 -species Desulfovibrio sp. enrichment culture clone Jdgsrb011 root:Host-associated:Mammals:Digestive system 1.0 +species Desulfovibrio sp. enrichment culture clone Jdgsrb011 root:Host-associated:Mammals:Digestive system 2.0 species Shigella dysenteriae root:Host-associated:Mammals:Digestive system 1.0 species bacterium NLAE-zl-G459 root:Host-associated:Mammals:Digestive system 1.0 order Vestibuliferida root:Host-associated:Mammals:Digestive system 1.0 order Vestibuliferida root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Ophryoscolecidae root:Host-associated:Mammals:Digestive system 1.0 +family Ophryoscolecidae root:Host-associated:Mammals:Digestive system:Midgut 1.0 family Ophryoscolecidae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 family Ophryoscolecidae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Ophryoscolecidae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 family Ophryoscolecidae root:Host-associated:Animal:Digestive system 1.0 genus Entodinium root:Host-associated:Mammals:Digestive system 1.0 genus Entodinium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 -genus Entodinium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +genus Entodinium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 genus Entodinium root:Host-associated:Animal:Digestive system 1.0 genus Candidatus Methanomethylophilus root:Host-associated:Mammals:Digestive system 1.0 genus Candidatus Methanomethylophilus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 genus Isotricha root:Host-associated:Mammals:Digestive system 1.0 genus Epidinium root:Host-associated:Mammals:Digestive system 1.0 +genus Epidinium root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Methanosphaera sp. ISO3-F5 root:Host-associated:Mammals:Digestive system 1.0 species Methanosphaera sp. ISO3-F5 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 species Methanosphaera sp. ISO3-F5 root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 @@ -58610,12 +60094,12 @@ species Epidinium sp. LDK-2011 root:Host-associated:Mammals:Digestive system 1.0 species Metadinium minorum root:Host-associated:Mammals:Digestive system 1.0 species bacterium LC2020 root:Host-associated:Mammals:Digestive system 1.0 species Prevotella ruminicola root:Host-associated:Mammals:Digestive system 2.0 +species Prevotella ruminicola root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella ruminicola root:Host-associated:Mammals:Digestive system:Stomach:Rumen 5.0 species Prevotella ruminicola root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 species Prevotella ruminicola root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 species Prevotella ruminicola root:Host-associated:Animal:Digestive system 1.0 species Prevotella ruminicola root:Host-associated:Fish:Digestive system 1.0 -species Prevotella ruminicola root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella ruminicola root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 genus Succiniclasticum root:Host-associated:Mammals:Digestive system 3.0 genus Succiniclasticum root:Host-associated:Mammals:Digestive system:Stomach:Rumen 11.0 @@ -58627,32 +60111,27 @@ genus Pyramidobacter root:Host-associated:Human:Digestive system:Oral 1.0 genus Pyramidobacter root:Engineered:Biogas plant:Wet fermentation 1.0 genus Pyramidobacter root:Host-associated:Birds:Digestive system:Ceca 1.0 species Firmicutes oral clone CK030 root:Host-associated:Mammals:Digestive system 1.0 +species Bifidobacterium merycicum root:Host-associated:Mammals:Digestive system 1.0 +species Succinimonas amylolytica root:Host-associated:Mammals:Digestive system 1.0 +species Succinimonas amylolytica root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Mammals:Digestive system 2.0 +species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Animal:Digestive system:Fecal 1.0 +species Campylobacter corcagiensis root:Host-associated:Mammals:Digestive system 1.0 +species Mycoplasma moatsii root:Host-associated:Mammals:Digestive system 1.0 +species Mycoplasma moatsii root:Host-associated:Mammals 1.0 +species Mycoplasma moatsii root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Mycoplasma moatsii root:Host-associated:Animal:Digestive system 1.0 species Millionella massiliensis root:Host-associated:Mammals:Digestive system 2.0 species Millionella massiliensis root:Host-associated:Birds:Digestive system:Ceca 1.0 species Millionella massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 -genus Selenomonas root:Host-associated:Mammals:Digestive system 1.0 -genus Selenomonas root:Host-associated:Human:Digestive system:Oral 7.0 -genus Selenomonas root:Environmental:Aquatic:Sediment 1.0 -genus Selenomonas root:Host-associated:Mammals:Digestive system:Stomach:Rumen 4.0 -genus Selenomonas root:Host-associated:Human:Digestive system 2.0 -genus Selenomonas root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 4.0 -genus Selenomonas root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -genus Selenomonas root:Host-associated:Animal:Digestive system 1.0 -genus Selenomonas root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 -genus Butyrivibrio root:Host-associated:Mammals:Digestive system 2.0 -genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 -genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -genus Butyrivibrio root:Host-associated:Animal:Digestive system 1.0 -genus Butyrivibrio root:Host-associated 1.0 -genus Butyrivibrio root:Host-associated:Mammals:Gastrointestinal tract 1.0 -genus Butyrivibrio root:Host-associated:Mammals:Digestive system:Midgut 1.0 species bacterium YAD2002 root:Host-associated:Mammals:Digestive system 1.0 species bacterium YAD2002 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species bacterium XBB3003 root:Host-associated:Mammals:Digestive system 1.0 species rumen bacterium NK3B31 root:Host-associated:Mammals:Digestive system 1.0 species rumen bacterium NK3B31 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 species Bacteroidales bacterium Bact 15 root:Host-associated:Mammals:Digestive system 1.0 +species Bacteroidales bacterium Bact 15 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Prevotella brevis root:Host-associated:Mammals:Digestive system 1.0 species Prevotella brevis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Prevotella sp. MA2016 root:Host-associated:Mammals:Digestive system 1.0 @@ -58694,9 +60173,7 @@ species Roseomonas sp. P-9Y root:Host-associated:Mammals:Digestive system 1.0 species Gorillibacterium massiliense root:Host-associated:Mammals:Digestive system 1.0 species Lactobacillus sp. root:Host-associated:Mammals:Digestive system 1.0 species Lachnospiraceae bacterium DW67 root:Host-associated:Mammals:Digestive system 1.0 -species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Mammals:Digestive system 1.0 -species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 -species Erysipelotrichaceae bacterium NK3D112 root:Host-associated:Animal:Digestive system:Fecal 1.0 +species Lachnospiraceae bacterium DW67 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Dysgonomonas sp. PH5-45 root:Host-associated:Mammals:Digestive system 1.0 species Dysgonomonas sp. PH5-45 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Dysgonomonas sp. PH5-45 root:Host-associated:Reptile 1.0 @@ -58710,8 +60187,8 @@ species Myroides indicus root:Host-associated:Mammals:Digestive system 1.0 species Myroides indicus root:Engineered:Food production:Fermented beverages 1.0 species Syncephalastrum monosporum root:Host-associated:Mammals:Digestive system 1.0 genus Brachyspira root:Host-associated:Mammals:Digestive system 1.0 -genus Brachyspira root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Brachyspira root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +genus Brachyspira root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Helicobacter apodemus root:Host-associated:Mammals:Digestive system 2.0 species Helicobacter apodemus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Helicobacter apodemus root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 @@ -58726,11 +60203,11 @@ species bacterium P201 root:Host-associated:Animal:Digestive system 1.0 species Solibacillus silvestris root:Host-associated:Mammals:Digestive system 1.0 species Solibacillus silvestris root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Solibacillus silvestris root:Mixed 1.0 -species Solibacillus silvestris root:Engineered:Solid waste:Composting 2.0 species Solibacillus silvestris root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Solibacillus silvestris root:Engineered:Solid waste:Composting 2.0 species Entodinium caudatum root:Host-associated:Mammals:Digestive system 1.0 species Entodinium caudatum root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 -species Entodinium caudatum root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +species Entodinium caudatum root:Host-associated:Mammals:Digestive system:Foregut:Rumen 4.0 species Entodinium caudatum root:Host-associated:Animal:Digestive system 1.0 species bacterium F082 root:Host-associated:Mammals:Digestive system 1.0 species bacterium F082 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 @@ -58801,12 +60278,12 @@ phylum FBP root:Host-associated:Mammals:Digestive system 1.0 phylum FBP root:Environmental:Terrestrial:Soil:Permafrost 1.0 phylum FBP root:Host-associated:Plants:Phylloplane 3.0 phylum FBP root:Environmental:Terrestrial:Soil 2.0 +phylum FBP root:Engineered:Lab enrichment 1.0 phylum FBP root:Environmental:Terrestrial:Soil:Desert 1.0 phylum FBP root:Engineered:Food production:Fermented seafood 1.0 phylum FBP root:Host-associated:Insecta:Digestive system 1.0 phylum FBP root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 phylum FBP root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -phylum FBP root:Engineered:Lab enrichment 1.0 phylum FBP root:Engineered:Food production:Fermented vegetables 1.0 phylum FBP root:Engineered:Solid waste:Composting:Grass 1.0 genus Euzebya root:Host-associated:Mammals:Digestive system 1.0 @@ -58834,10 +60311,10 @@ family Bartonellaceae root:Host-associated:Mammals:Digestive system:Large intest family Bartonellaceae root:Host-associated:Insecta:Digestive system 2.0 family Bartonellaceae root:Host-associated:Insecta 1.0 genus Bartonella root:Host-associated:Mammals:Digestive system 1.0 +genus Bartonella root:Engineered:Lab enrichment 1.0 genus Bartonella root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Bartonella root:Host-associated:Insecta:Digestive system 1.0 genus Bartonella root:Host-associated:Insecta 1.0 -genus Bartonella root:Engineered:Lab enrichment 1.0 genus Asaia root:Host-associated:Mammals:Digestive system 1.0 species Bartonella tamiae root:Host-associated:Mammals:Digestive system 1.0 species Bartonella tamiae root:Host-associated:Birds 2.0 @@ -58851,15 +60328,24 @@ species Apibacter adventoris root:Host-associated:Insecta:Digestive system 1.0 species Actinobacillus delphinicola root:Host-associated:Mammals:Digestive system 1.0 species Actinobacillus delphinicola root:Host-associated:Mammals:Skin 1.0 species Loriellopsis cavernicola root:Host-associated:Mammals:Digestive system 1.0 +species Ruminococcaceae bacterium MCWD6 root:Host-associated:Mammals:Digestive system 1.0 +species Clostridium septicum root:Host-associated:Mammals:Digestive system 1.0 +species Clostridium septicum root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Clostridium septicum root:Host-associated:Mammals:Skin 1.0 +species Peptococcus sp. canine oral taxon 334 root:Host-associated:Mammals:Digestive system 1.0 +species Peptococcus sp. canine oral taxon 334 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Eubacterium uniforme root:Host-associated:Mammals:Digestive system 2.0 -species Eubacterium uniforme root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +species Eubacterium uniforme root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Eubacterium uniforme root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 species Eubacterium uniforme root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Tyzzerella root:Host-associated:Mammals:Digestive system 1.0 genus Tyzzerella root:Engineered:Bioreactor 1.0 +genus Tyzzerella root:Mixed 1.0 genus Tyzzerella root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 genus Tyzzerella root:Host-associated:Animal:Digestive system 1.0 genus Tyzzerella root:Host-associated:Insecta:Digestive system 1.0 genus Tyzzerella root:Host-associated:Mammals:Gastrointestinal tract:Intestine 1.0 +genus Tyzzerella root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 species Oscillospiraceae bacterium Zagget4 root:Host-associated:Mammals:Digestive system 1.0 species Oscillospiraceae bacterium Zagget4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Oscillospiraceae bacterium Zagget4 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 @@ -58880,6 +60366,7 @@ species Aliifodinibius sp. HME9836 root:Host-associated:Mammals:Digestive system species Clostridium sp. Clone-17 root:Host-associated:Mammals:Digestive system 1.0 species Clostridium sp. Clone-17 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Rhodobiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Rhodobiaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 family Rhodobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family Rhodobiaceae root:Environmental:Terrestrial:Soil:Desert 2.0 family Rhodobiaceae root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -58887,10 +60374,12 @@ family Rhodobiaceae root:Environmental:Terrestrial:Soil:Sand 1.0 family Rhodobiaceae root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 family Rhodobiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 genus Tepidicaulis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +genus Tepidicaulis root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 genus Tepidicaulis root:Engineered:Lab enrichment:Defined media:Marine media 1.0 genus Ilyobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Ilyobacter root:Environmental:Aquatic:Marine:Sediment 1.0 species Tepidicaulis marinus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +species Tepidicaulis marinus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 species Tepidicaulis marinus root:Environmental:Aquatic:Marine:Coastal 1.0 species Tepidicaulis marinus root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Allochromatium vinosum root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -58908,6 +60397,36 @@ species Desulfovibrio salexigens root:Environmental:Aquatic:Marine:Sediment 1.0 species Desulfovibrio dechloracetivorans root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Halomonas taeanensis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Halomonas taeanensis root:Host-associated:Plants:Phylloplane 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +family Thermoanaerobacteraceae root:Engineered:Bioreactor 13.0 +family Thermoanaerobacteraceae root:Engineered:Wastewater:Activated Sludge 2.0 +family Thermoanaerobacteraceae root:Engineered:Food production:Fermented beverages 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Thermoanaerobacteraceae root:Engineered:Biogas plant:Wet fermentation 3.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 +family Thermoanaerobacteraceae root:Engineered:Bioreactor:Continuous culture 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 +family Thermoanaerobacteraceae root:Engineered:Biogas plant 5.0 +family Thermoanaerobacteraceae root:Engineered:Solid waste:Composting:Bioreactor 1.0 +family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 +family Brassicaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +family Brassicaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 +genus Caldanaerobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +genus Caldanaerobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 +genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +genus Caldicellulosiruptor root:Engineered:Bioreactor 1.0 +genus Caldicellulosiruptor root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs 1.0 +genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 +genus Caldicellulosiruptor root:Engineered:Bioreactor:Continuous culture 1.0 +genus Caldicellulosiruptor root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 +species Caldanaerobacter subterraneus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 +species Caldanaerobacter subterraneus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 +species Caldanaerobacter subterraneus root:Engineered:Modeled 1.0 +species Caldicellulosiruptor obsidiansis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 +species Caldicellulosiruptor obsidiansis root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 order DS-18 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 order DS-18 root:Environmental:Terrestrial:Soil 2.0 order DS-18 root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -58929,8 +60448,8 @@ genus Alicyclobacillus root:Mixed 1.0 genus Alicyclobacillus root:Engineered:Food production:Dairy products 1.0 genus Alicyclobacillus root:Environmental:Terrestrial:Soil 7.0 genus Alicyclobacillus root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Alicyclobacillus root:Environmental:Terrestrial:Soil:Desert 2.0 genus Alicyclobacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Alicyclobacillus root:Environmental:Terrestrial:Soil:Desert 2.0 genus Alicyclobacillus root:Environmental:Terrestrial:Soil:Mine 1.0 genus Alicyclobacillus root:Environmental:Aquatic:Thermal springs:Sediment 1.0 genus Alicyclobacillus root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -58992,6 +60511,7 @@ order Adinetida root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Thermaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 16.0 family Thermaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 family Thermaceae root:Engineered:Bioreactor 21.0 +family Thermaceae root:Mixed 1.0 family Thermaceae root:Host-associated:Mammals 1.0 family Thermaceae root:Engineered:Food production:Fermented beverages 2.0 family Thermaceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 8.0 @@ -59058,6 +60578,7 @@ genus Anoxybacillus root:Host-associated:Human:Skin 1.0 genus Anoxybacillus root:Engineered:Food production:Fermented beverages 1.0 genus Anoxybacillus root:Engineered:Food production:Dairy products 2.0 genus Anoxybacillus root:Environmental:Terrestrial:Soil:Contaminated 1.0 +genus Anoxybacillus root:Environmental:Terrestrial:Soil 1.0 genus Anoxybacillus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Anoxybacillus root:Environmental:Aquatic:Thermal springs 1.0 genus Thermobrachium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59083,8 +60604,8 @@ phylum Candidatus Hydrogenedentes root:Environmental:Aquatic:Thermal springs:Hot phylum Candidatus Hydrogenedentes root:Engineered:Bioreactor 3.0 phylum Candidatus Hydrogenedentes root:Engineered:Wastewater:Activated Sludge 6.0 phylum Candidatus Hydrogenedentes root:Engineered:Wastewater 1.0 -phylum Candidatus Hydrogenedentes root:Engineered:Wastewater:Industrial wastewater 1.0 phylum Candidatus Hydrogenedentes root:Engineered:Lab enrichment 1.0 +phylum Candidatus Hydrogenedentes root:Engineered:Wastewater:Industrial wastewater 1.0 family Gottschalkiaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Desulfonatronaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Gottschalkia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59102,6 +60623,7 @@ species Candidatus Hydrogenedentes bacterium ADurb.Bin101 root:Engineered:Biorea species Candidatus Hydrogenedentes bacterium ADurb.Bin101 root:Engineered:Wastewater:Activated Sludge 4.0 species Candidatus Hydrogenedentes bacterium ADurb.Bin101 root:Engineered:Wastewater 1.0 species Candidatus Hydrogenedentes bacterium ADurb.Bin101 root:Environmental:Aquatic:Sediment 1.0 +species Candidatus Hydrogenedentes bacterium ADurb.Bin101 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Nitrosomonas mobilis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Nitrosomonas mobilis root:Environmental:Terrestrial:Soil 1.0 species Prosthecochloris sp. HL-130-GSB root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59116,27 +60638,6 @@ phylum Candidatus Fervidibacteria root:Environmental:Aquatic:Thermal springs:Sed class Tepidiformia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Hapalosiphonaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Hapalosiphonaceae root:Host-associated:Porifera 1.0 -genus Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 11.0 -genus Thermus root:Environmental:Aquatic:Estuary:Sediment 2.0 -genus Thermus root:Engineered:Bioreactor 20.0 -genus Thermus root:Engineered:Wastewater:Activated Sludge 1.0 -genus Thermus root:Engineered:Food production:Fermented beverages 2.0 -genus Thermus root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 -genus Thermus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 30.0 -genus Thermus root:Host-associated:Human:Digestive system:Oral 1.0 -genus Thermus root:Engineered:Food production:Dairy products 1.0 -genus Thermus root:Environmental:Terrestrial:Soil 2.0 -genus Thermus root:Environmental:Aquatic:Thermal springs 2.0 -genus Thermus root:Engineered:Solid waste:Composting 6.0 -genus Thermus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -genus Thermus root:Engineered:Food production 1.0 -genus Thermus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 -genus Thermus root:Environmental:Aquatic:Estuary 19.0 -genus Thermus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -genus Thermus root:Environmental:Aquatic:Thermal springs:Sediment 4.0 -genus Thermus root:Engineered:Built environment 1.0 -genus Thermus root:Engineered:Food production:Fermented vegetables 1.0 -genus Thermus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 genus Fischerella root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Fervidibacteria bacterium JGI 0000001-B9 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Meiothermus silvanus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59158,6 +60659,7 @@ genus Pediococcus root:Environmental:Terrestrial:Soil 2.0 genus Pediococcus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Pediococcus root:Host-associated:Porifera 1.0 genus Pediococcus root:Engineered:Food production 3.0 +genus Pediococcus root:Host-associated:Insecta:Digestive system 1.0 genus Pediococcus root:Engineered:Biogas plant 1.0 genus Pediococcus root:Engineered:Food production:Fermented vegetables 3.0 genus Pediococcus root:Environmental:Terrestrial:Agricultural field 1.0 @@ -59192,8 +60694,8 @@ species WCHB1-05 multivorum root:Engineered:Lab enrichment 1.0 species Leptotrichia parvula root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Leptotrichia parvula root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Leptotrichia parvula root:Environmental:Terrestrial:Soil 2.0 -species Leptotrichia parvula root:Environmental:Terrestrial:Soil:Desert 1.0 species Leptotrichia parvula root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Leptotrichia parvula root:Environmental:Terrestrial:Soil:Desert 1.0 species Leptotrichia parvula root:Environmental:Terrestrial:Soil:Mine 1.0 species Citrobacter rectus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Fusobacterium parvula root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59268,6 +60770,7 @@ species Methylibium curvus root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 species Methylibium curvus root:Engineered:Wastewater:Water and sludge 1.0 genus Fervidobacterium root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 genus Fervidobacterium root:Engineered:Wastewater:Activated Sludge 1.0 +genus Fervidobacterium root:Host-associated:Mammals 1.0 genus Fervidobacterium root:Engineered:Biogas plant:Wet fermentation 1.0 genus Fervidobacterium root:Environmental:Aquatic:Thermal springs 1.0 genus Fervidobacterium root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -59278,7 +60781,7 @@ genus Cellvibrio root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Cellvibrio root:Engineered:Food production:Silage fermentation 1.0 genus Cellvibrio root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Cellvibrio root:Host-associated:Plants:Phylloplane 1.0 -genus Cellvibrio root:Host-associated:Plants:Rhizosphere 2.0 +genus Cellvibrio root:Host-associated:Plants:Rhizosphere 3.0 genus Cellvibrio root:Environmental:Terrestrial:Soil 2.0 genus Cellvibrio root:Engineered:Solid waste:Composting 3.0 genus Cellvibrio root:Host-associated:Plants:Root 1.0 @@ -59300,15 +60803,17 @@ species Meiothermus cerbereus root:Environmental:Aquatic:Thermal springs:Hot (42 species Vermamoeba vermiformis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Vermamoeba vermiformis root:Engineered:Bioreactor 2.0 species Vermamoeba vermiformis root:Engineered:Wastewater 1.0 +species Vermamoeba vermiformis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Vermamoeba vermiformis root:Host-associated:Human:Digestive system 1.0 +species Vermamoeba vermiformis root:Environmental:Aquatic:Freshwater 1.0 species Vermamoeba vermiformis root:Environmental:Aquatic:Freshwater:Drinking water 2.0 species Vermamoeba vermiformis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 family Roseiflexaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 family Roseiflexaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Roseiflexaceae root:Mixed 2.0 +family Roseiflexaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Roseiflexaceae root:Environmental:Aquatic:Marine:Coastal 1.0 family Roseiflexaceae root:Host-associated:Plants:Root 1.0 -family Roseiflexaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Roseiflexaceae root:Environmental:Terrestrial:Soil:Mine 1.0 family Roseiflexaceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 species Roseiflexus castenholzii root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -59332,9 +60837,9 @@ species Sphingopyxis alaskensis root:Environmental:Terrestrial:Soil:Permafrost 1 species Sphingopyxis alaskensis root:Host-associated:Plants:Rhizosphere 1.0 species Sphingopyxis alaskensis root:Environmental:Terrestrial:Soil 3.0 species Sphingopyxis alaskensis root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Sphingopyxis alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Sphingopyxis alaskensis root:Environmental:Aquatic:Freshwater 1.0 species Sphingopyxis alaskensis root:Environmental:Terrestrial:Soil:Desert 1.0 -species Sphingopyxis alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Sphingopyxis alaskensis root:Engineered:Bioreactor:Continuous culture 1.0 species Sphingopyxis alaskensis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Sphingopyxis alaskensis root:Engineered:Wastewater:Water and sludge 2.0 @@ -59348,6 +60853,7 @@ order Acidilobales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C order Nanoarchaeales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 7.0 order Nanoarchaeales root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 order Sulfolobales root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 8.0 +order Sulfolobales root:Environmental:Aquatic:Marine:Sediment 1.0 order Sulfolobales root:Environmental:Aquatic:Thermal springs 1.0 order Sulfolobales root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 family Thermoproteaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 10.0 @@ -59418,6 +60924,7 @@ genus Candidatus Fervidibacter root:Environmental:Aquatic:Thermal springs:Near-b genus Thermotoga root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 genus Thermotoga root:Engineered:Bioreactor 1.0 genus Thermotoga root:Engineered:Wastewater:Activated Sludge 3.0 +genus Thermotoga root:Environmental:Aquatic:Marine:Sediment 1.0 genus Thermotoga root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Thermotoga root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 genus Thermotoga root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 @@ -59429,33 +60936,10 @@ species Thermocrinis ruber root:Environmental:Aquatic:Lentic 1.0 species Thermus aquaticus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 species bacterium T1.2 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 3.0 species bacterium T1.2 root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -family Thermoanaerobacteraceae root:Engineered:Bioreactor 13.0 -family Thermoanaerobacteraceae root:Engineered:Wastewater:Activated Sludge 2.0 -family Thermoanaerobacteraceae root:Engineered:Food production:Fermented beverages 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 -family Thermoanaerobacteraceae root:Engineered:Biogas plant:Wet fermentation 3.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 -family Thermoanaerobacteraceae root:Engineered:Bioreactor:Continuous culture 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Thermal springs:Sediment 1.0 -family Thermoanaerobacteraceae root:Engineered:Biogas plant 5.0 -family Thermoanaerobacteraceae root:Engineered:Solid waste:Composting:Bioreactor 1.0 -family Thermoanaerobacteraceae root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 -genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -genus Caldicellulosiruptor root:Engineered:Bioreactor 1.0 -genus Caldicellulosiruptor root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs 1.0 -genus Caldicellulosiruptor root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 -genus Caldicellulosiruptor root:Engineered:Bioreactor:Continuous culture 1.0 -genus Caldicellulosiruptor root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 genus Thermovenabulum root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Thermovenabulum root:Engineered:Solid waste:Composting 1.0 genus Thermovenabulum root:Environmental:Terrestrial:Soil:Desert 1.0 genus Thermovenabulum root:Engineered:Bioreactor:Continuous culture 1.0 -species Caldicellulosiruptor obsidiansis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -species Caldicellulosiruptor obsidiansis root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Caloramator fervidus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Fervidobacterium pennivorans root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Thermovenabulum gondwanense root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 @@ -59463,8 +60947,8 @@ order Acidithiobacillales root:Environmental:Aquatic:Thermal springs:Hot (42-90C order Acidithiobacillales root:Engineered:Bioreactor 1.0 order Acidithiobacillales root:Environmental:Terrestrial:Soil 1.0 order Acidithiobacillales root:Environmental:Aquatic:Sediment 1.0 -order Acidithiobacillales root:Environmental:Aquatic:Thermal springs 1.0 order Acidithiobacillales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Acidithiobacillales root:Environmental:Aquatic:Thermal springs 1.0 order Acidithiobacillales root:Engineered:Wastewater:Water and sludge 1.0 order Acidithiobacillales root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 order Acidithiobacillales root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 @@ -59478,8 +60962,8 @@ family Acidithiobacillaceae root:Engineered:Bioreactor 1.0 family Acidithiobacillaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family Acidithiobacillaceae root:Environmental:Terrestrial:Soil 1.0 family Acidithiobacillaceae root:Environmental:Aquatic:Sediment 1.0 -family Acidithiobacillaceae root:Environmental:Aquatic:Thermal springs 1.0 family Acidithiobacillaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Acidithiobacillaceae root:Environmental:Aquatic:Thermal springs 1.0 family Acidithiobacillaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 family Acidithiobacillaceae root:Engineered:Industrial production 1.0 family Acidithiobacillaceae root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 @@ -59502,9 +60986,9 @@ genus Acidithiobacillus root:Engineered:Wastewater:Activated Sludge 1.0 genus Acidithiobacillus root:Environmental:Terrestrial:Soil 1.0 genus Acidithiobacillus root:Environmental:Aquatic 2.0 genus Acidithiobacillus root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Acidithiobacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Acidithiobacillus root:Environmental:Aquatic:Thermal springs 1.0 genus Acidithiobacillus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus Acidithiobacillus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Acidithiobacillus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Acidithiobacillus root:Engineered:Wastewater:Industrial wastewater 1.0 genus Acidithiobacillus root:Engineered:Modeled 1.0 @@ -59528,7 +61012,7 @@ family Isosphaeraceae root:Engineered:Bioreactor 1.0 family Isosphaeraceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Isosphaeraceae root:Host-associated:Plants:Rhizosphere 2.0 family Isosphaeraceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -family Isosphaeraceae root:Environmental:Terrestrial:Soil 12.0 +family Isosphaeraceae root:Environmental:Terrestrial:Soil 13.0 family Isosphaeraceae root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family Isosphaeraceae root:Environmental:Terrestrial:Soil:Grasslands 2.0 family Isosphaeraceae root:Environmental:Aquatic:Freshwater 3.0 @@ -59584,8 +61068,8 @@ species Aspergillus clavatus root:Environmental:Aquatic:Thermal springs:Hot (42- species Aspergillus clavatus root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus eiseniae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Candidatus Propionivibrio aalborgensis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -species Limnobacter sp. CACIAM 66H1 root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -species Limnobacter sp. CACIAM 66H1 root:Environmental:Aquatic:Freshwater:Lotic 1.0 +species Candidatus Propionivibrio aalborgensis root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +species Candidatus Propionivibrio aalborgensis root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Nesterenkonia alba root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Nitriliruptor alkaliphilus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Nitriliruptor alkaliphilus root:Host-associated:Mammals 1.0 @@ -59602,8 +61086,8 @@ family Thermomicrobiaceae root:Environmental:Aquatic:Thermal springs:Sediment 2. family Chloroflexaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family Chloroflexaceae root:Mixed 1.0 family Chloroflexaceae root:Environmental:Terrestrial:Soil 3.0 -family Chloroflexaceae root:Environmental:Aquatic:Thermal springs 1.0 family Chloroflexaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Chloroflexaceae root:Environmental:Aquatic:Thermal springs 1.0 family Chloroflexaceae root:Environmental:Aquatic:Thermal springs:Sediment 2.0 family Chloroflexaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 family Chloroflexaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -59708,9 +61192,9 @@ phylum AD3 root:Host-associated:Plants:Rhizosphere 2.0 phylum AD3 root:Environmental:Terrestrial:Soil 22.0 phylum AD3 root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 phylum AD3 root:Environmental:Terrestrial:Soil:Wetlands 2.0 +phylum AD3 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum AD3 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 phylum AD3 root:Host-associated:Plants:Root 1.0 -phylum AD3 root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum AD3 root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 phylum AD3 root:Environmental:Terrestrial:Soil:Clay 1.0 phylum AD3 root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 @@ -59746,9 +61230,9 @@ order RB41 root:Host-associated:Plants:Rhizosphere 8.0 order RB41 root:Environmental:Terrestrial:Soil 46.0 order RB41 root:Environmental:Terrestrial:Soil:Wetlands 1.0 order RB41 root:Environmental:Terrestrial:Soil:Grasslands 3.0 +order RB41 root:Host-associated:Plants:Rhizosphere:Soil 7.0 order RB41 root:Environmental:Terrestrial:Soil:Desert 3.0 order RB41 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -order RB41 root:Host-associated:Plants:Rhizosphere:Soil 7.0 order RB41 root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order RB41 root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 order RB41 root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -59767,9 +61251,9 @@ family Ellin6075 root:Host-associated:Plants:Rhizosphere 3.0 family Ellin6075 root:Environmental:Terrestrial:Soil 19.0 family Ellin6075 root:Environmental:Terrestrial:Soil:Wetlands 1.0 family Ellin6075 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +family Ellin6075 root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Ellin6075 root:Environmental:Terrestrial:Soil:Desert 2.0 family Ellin6075 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -family Ellin6075 root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Ellin6075 root:Engineered:Wastewater:Industrial wastewater 2.0 family Ellin6075 root:Environmental:Terrestrial:Soil:Sand 1.0 family Ellin6075 root:Engineered:Bioreactor:Continuous culture 2.0 @@ -59786,16 +61270,16 @@ genus Segetibacter root:Environmental:Terrestrial:Soil:Permafrost 2.0 genus Segetibacter root:Mixed 2.0 genus Segetibacter root:Engineered:Food production:Fermented beverages 1.0 genus Segetibacter root:Environmental:Terrestrial:Soil 8.0 +genus Segetibacter root:Engineered:Lab enrichment 1.0 +genus Segetibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Segetibacter root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Segetibacter root:Host-associated:Plants:Root 1.0 -genus Segetibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Segetibacter root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 genus Segetibacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Segetibacter root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 genus Segetibacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Segetibacter root:Engineered:Wastewater:Water and sludge 1.0 genus Segetibacter root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Segetibacter root:Engineered:Lab enrichment 1.0 genus Segetibacter root:Host-associated:Plants:Rhizome 1.0 genus Segetibacter root:Host-associated:Arthropoda 1.0 genus Segetibacter root:Environmental:Terrestrial:Soil:Wetlands:Permafrost 1.0 @@ -59814,18 +61298,18 @@ genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus CandidatusKoribacter root:Host-associated:Plants:Rhizosphere 1.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil 44.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 +genus CandidatusKoribacter root:Engineered:Lab enrichment 1.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Wetlands 3.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Grasslands 4.0 +genus CandidatusKoribacter root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus CandidatusKoribacter root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus CandidatusKoribacter root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus CandidatusKoribacter root:Host-associated:Plants:Root 3.0 genus CandidatusKoribacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus CandidatusKoribacter root:Host-associated:Plants:Rhizosphere:Soil 5.0 genus CandidatusKoribacter root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 genus CandidatusKoribacter root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus CandidatusKoribacter root:Engineered:Lab enrichment 1.0 genus CandidatusKoribacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus CandidatusKoribacter root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus CandidatusKoribacter root:Host-associated:Protozoa 1.0 @@ -59890,19 +61374,6 @@ species Paracoccus oxalaticus root:Environmental:Aquatic:Thermal springs:Hot (42 species Methylococcus capsulatus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Alicyclobacillus pelovolcani root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 species Chloroflexus pelovolcani root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -class Hydrogenophilalia root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 -class Hydrogenophilalia root:Environmental:Terrestrial:Geologic 1.0 -class Hydrogenophilalia root:Engineered:Bioreactor 13.0 -class Hydrogenophilalia root:Engineered:Wastewater 1.0 -class Hydrogenophilalia root:Environmental:Aquatic:Sediment 2.0 -class Hydrogenophilalia root:Engineered:Biogas plant:Wet fermentation 2.0 -class Hydrogenophilalia root:Environmental:Aquatic:Thermal springs 1.0 -class Hydrogenophilalia root:Engineered:Solid waste:Composting 2.0 -class Hydrogenophilalia root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -class Hydrogenophilalia root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -class Hydrogenophilalia root:Engineered:Food production:Fermented vegetables 1.0 -class Hydrogenophilalia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -class Hydrogenophilalia root:Environmental:Terrestrial:Oil reservoir 1.0 family Fervidicoccaceae root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Apis root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Aquifex root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 2.0 @@ -59917,6 +61388,7 @@ genus Pterygota root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Pterygota root:Host-associated:Insecta:Digestive system 1.0 genus Pterygota root:Host-associated:Insecta 1.0 genus Pterygota root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Pterygota root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Tepidiphilus root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Tepidiphilus root:Engineered:Bioreactor 4.0 genus Tepidiphilus root:Engineered:Solid waste:Composting 2.0 @@ -60032,8 +61504,8 @@ family Sporolactobacillaceae root:Engineered:Solid waste:Composting 1.0 family [Exiguobacteraceae] root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 family [Exiguobacteraceae] root:Engineered:Food production:Dairy products 1.0 family [Exiguobacteraceae] root:Environmental:Terrestrial:Soil 1.0 -family [Exiguobacteraceae] root:Engineered:Food production 1.0 family [Exiguobacteraceae] root:Engineered:Lab enrichment 3.0 +family [Exiguobacteraceae] root:Engineered:Food production 1.0 family [Exiguobacteraceae] root:Engineered:Food production:Fermented vegetables 1.0 genus Brochothrix root:Environmental:Aquatic:Thermal springs:Hot (42-90C) 1.0 genus Brochothrix root:Engineered:Food production:Dairy products 2.0 @@ -60153,9 +61625,12 @@ genus Aquabacterium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 genus Aquabacterium root:Environmental:Aquatic:Freshwater:Groundwater:Cave water 1.0 genus Aquabacterium root:Host-associated:Microbial 1.0 genus Paucibacter root:Environmental:Terrestrial:Geologic 1.0 +genus Paucibacter root:Engineered:Food production:Fermented beverages 1.0 genus Paucibacter root:Environmental:Terrestrial:Soil 1.0 +genus Paucibacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Paucibacter root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Paucibacter root:Host-associated:Mammals:Gastrointestinal tract 1.0 +genus Paucibacter root:Host-associated:Insecta 1.0 genus Hydrogenophilus root:Environmental:Terrestrial:Geologic 1.0 genus Hydrogenophilus root:Engineered:Bioreactor 1.0 genus Hydrogenophilus root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -60165,6 +61640,7 @@ genus Hydrogenophilus root:Environmental:Terrestrial:Oil reservoir 1.0 species Candidatus Omnitrophica bacterium CG1 02 44 16 root:Environmental:Terrestrial:Geologic 1.0 species Microcoleus paludosus root:Environmental:Terrestrial:Geologic 1.0 species Microcoleus paludosus root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +species Microcoleus paludosus root:Host-associated:Plants:Rhizosphere 1.0 species Chitinophagaceae bacterium root:Environmental:Terrestrial:Geologic 1.0 species Armatimonadetes bacterium 55-13 root:Environmental:Terrestrial:Geologic 1.0 species Armatimonadetes bacterium 55-13 root:Engineered:Bioreactor 1.0 @@ -60173,9 +61649,9 @@ species Armatimonadetes bacterium 55-13 root:Environmental:Aquatic:Marine:Sedime species Armatimonadetes bacterium 55-13 root:Engineered:Wastewater:Water and sludge 1.0 class TM7-1 root:Environmental:Terrestrial:Geologic 1.0 class TM7-1 root:Environmental:Terrestrial:Soil:Permafrost 1.0 +class TM7-1 root:Host-associated:Plants:Rhizosphere:Soil 1.0 class TM7-1 root:Environmental:Aquatic:Freshwater 1.0 class TM7-1 root:Host-associated:Plants:Root 2.0 -class TM7-1 root:Host-associated:Plants:Rhizosphere:Soil 1.0 class TM7-1 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Pseudomonas lwoffii root:Environmental:Terrestrial:Geologic 1.0 species Pseudomonas lwoffii root:Host-associated:Plants:Rhizosphere 2.0 @@ -60216,6 +61692,7 @@ species Acinetobacter lwoffii root:Engineered:Wastewater:Activated Sludge 1.0 species Acinetobacter lwoffii root:Engineered:Food production:Dairy products 1.0 species Acinetobacter lwoffii root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Acinetobacter lwoffii root:Environmental:Terrestrial:Soil 2.0 +species Acinetobacter lwoffii root:Engineered:Lab enrichment 2.0 species Acinetobacter lwoffii root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Acinetobacter lwoffii root:Engineered:Solid waste:Composting 1.0 species Acinetobacter lwoffii root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -60227,7 +61704,6 @@ species Acinetobacter lwoffii root:Host-associated:Fish:Digestive system:Foregut species Acinetobacter lwoffii root:Environmental:Aquatic:Freshwater:Groundwater 2.0 species Acinetobacter lwoffii root:Engineered:Wastewater:Water and sludge 1.0 species Acinetobacter lwoffii root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -species Acinetobacter lwoffii root:Engineered:Lab enrichment 2.0 species Acinetobacter lwoffii root:Host-associated:Birds 1.0 species Acinetobacter lwoffii root:Engineered 1.0 species Acinetobacter lwoffii root:Host-associated:Protozoa 1.0 @@ -60251,9 +61727,9 @@ genus Thiofaba root:Engineered:Food production:Dairy products 1.0 genus Thiofaba root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Thiofaba root:Host-associated:Plants:Phylloplane 1.0 genus Thiofaba root:Environmental:Terrestrial:Soil 3.0 +genus Thiofaba root:Engineered:Lab enrichment 2.0 genus Thiofaba root:Environmental:Aquatic:Freshwater 1.0 genus Thiofaba root:Engineered:Modeled 1.0 -genus Thiofaba root:Engineered:Lab enrichment 2.0 genus Thiofaba root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 2.0 genus Thiofaba root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 genus Micrococcus root:Environmental:Terrestrial:Geologic 1.0 @@ -60282,31 +61758,36 @@ species Achromobacter microcystinivorans root:Engineered:Wastewater:Industrial w species Hyphomicrobium poindexterae root:Environmental:Terrestrial:Geologic 1.0 species Anaeromyxobacter terrae root:Environmental:Terrestrial:Geologic 1.0 class Mortierellomycetes root:Environmental:Terrestrial:Soil:Forest soil 4.0 -class Mortierellomycetes root:Environmental:Terrestrial:Soil 1.0 +class Mortierellomycetes root:Environmental:Terrestrial:Soil 2.0 class Mortierellomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 +class Mortierellomycetes root:Host-associated:Plants:Root 1.0 class Mortierellomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Bryobacterales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Bryobacterales root:Engineered:Food production:Fermented beverages 1.0 -order Bryobacterales root:Environmental:Terrestrial:Soil 2.0 +order Bryobacterales root:Host-associated:Plants:Rhizosphere 2.0 +order Bryobacterales root:Environmental:Terrestrial:Soil 4.0 order Bryobacterales root:Environmental:Terrestrial:Soil:Grasslands 1.0 +order Bryobacterales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Bryobacterales root:Environmental:Terrestrial:Deep subsurface 1.0 order Agaricales root:Environmental:Terrestrial:Soil:Forest soil 4.0 order Agaricales root:Host-associated:Plants 3.0 order Agaricales root:Engineered:Bioreactor 1.0 order Agaricales root:Host-associated:Plants:Rhizosphere 1.0 -order Agaricales root:Environmental:Terrestrial:Soil 1.0 +order Agaricales root:Environmental:Terrestrial:Soil 2.0 order Agaricales root:Environmental:Aquatic:Marine:Sediment 1.0 -order Agaricales root:Host-associated:Plants:Root 2.0 order Agaricales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Agaricales root:Host-associated:Plants:Root 3.0 order Agaricales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Agaricales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Agaricales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Agaricales root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +order Agaricales root:Host-associated:Fungi 1.0 +order Agaricales root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 order Mortierellales root:Environmental:Terrestrial:Soil:Forest soil 3.0 order Mortierellales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Mortierellales root:Host-associated:Mammals 1.0 order Mortierellales root:Host-associated:Plants:Rhizosphere 2.0 -order Mortierellales root:Environmental:Terrestrial:Soil 2.0 +order Mortierellales root:Environmental:Terrestrial:Soil 3.0 order Mortierellales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Roseiarcaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Roseiarcaceae root:Environmental:Terrestrial:Soil 2.0 @@ -60355,62 +61836,76 @@ species Chronogaster sp. 1189 root:Environmental:Terrestrial:Soil:Forest soil 1. species Metateratocephalus crassidens root:Environmental:Terrestrial:Soil:Forest soil 1.0 kingdom Rhizaria root:Environmental:Terrestrial:Soil:Forest soil 3.0 kingdom Rhizaria root:Host-associated:Plants 3.0 -kingdom Rhizaria root:Environmental:Terrestrial:Soil 1.0 +kingdom Rhizaria root:Environmental:Terrestrial:Soil 2.0 kingdom Rhizaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 +kingdom Rhizaria root:Host-associated:Plants:Root 1.0 kingdom Rhizaria root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Rhizaria root:Host-associated:Fungi 1.0 kingdom Heterolobosa root:Environmental:Terrestrial:Soil:Forest soil 2.0 -kingdom Heterolobosa root:Environmental:Terrestrial:Soil 1.0 +kingdom Heterolobosa root:Environmental:Terrestrial:Soil 2.0 kingdom Heterolobosa root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Heterolobosa root:Host-associated:Fungi 1.0 kingdom Rhodoplantae root:Environmental:Terrestrial:Soil:Forest soil 1.0 kingdom Rhodoplantae root:Host-associated:Plants 1.0 kingdom Rhodoplantae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +kingdom Rhodoplantae root:Host-associated:Fungi 1.0 phylum Mortierellomycota root:Environmental:Terrestrial:Soil:Forest soil 3.0 phylum Mortierellomycota root:Host-associated:Plants 2.0 -phylum Mortierellomycota root:Environmental:Terrestrial:Soil 1.0 +phylum Mortierellomycota root:Environmental:Terrestrial:Soil 2.0 phylum Mortierellomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 +phylum Mortierellomycota root:Host-associated:Plants:Root 1.0 phylum Mortierellomycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +phylum Mortierellomycota root:Host-associated:Fungi 1.0 phylum Glomeromycota root:Environmental:Terrestrial:Soil:Forest soil 2.0 phylum Glomeromycota root:Host-associated:Plants 2.0 +phylum Glomeromycota root:Environmental:Terrestrial:Soil 1.0 phylum Glomeromycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 +phylum Glomeromycota root:Host-associated:Plants:Root 1.0 +phylum Glomeromycota root:Host-associated:Fungi 1.0 phylum Anthophyta root:Environmental:Terrestrial:Soil:Forest soil 2.0 phylum Anthophyta root:Host-associated:Plants 3.0 phylum Anthophyta root:Environmental:Terrestrial:Soil 1.0 +phylum Anthophyta root:Host-associated:Plants:Root 1.0 phylum Anthophyta root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Anthophyta root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Rozellomycota root:Environmental:Terrestrial:Soil:Forest soil 3.0 phylum Rozellomycota root:Host-associated:Plants 3.0 +phylum Rozellomycota root:Environmental:Terrestrial:Soil 1.0 phylum Rozellomycota root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Rozellomycota root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 phylum Coniferophyta root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Leotiomycetes root:Environmental:Terrestrial:Soil:Forest soil 3.0 class Leotiomycetes root:Host-associated:Plants 4.0 class Leotiomycetes root:Host-associated:Mammals 1.0 -class Leotiomycetes root:Environmental:Terrestrial:Soil 1.0 +class Leotiomycetes root:Environmental:Terrestrial:Soil 3.0 class Leotiomycetes root:Environmental:Aquatic:Marine:Sediment 2.0 +class Leotiomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Leotiomycetes root:Host-associated:Human:Digestive system 1.0 class Leotiomycetes root:Environmental:Aquatic:Freshwater 2.0 -class Leotiomycetes root:Host-associated:Plants:Root 2.0 -class Leotiomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 +class Leotiomycetes root:Host-associated:Plants:Root 3.0 class Leotiomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Leotiomycetes root:Environmental:Terrestrial:Soil:Clay 1.0 class Leotiomycetes root:Host-associated:Plants:Phylloplane:Endophytes 1.0 class Leotiomycetes root:Host-associated:Animal:Digestive system:Fecal 1.0 +class Leotiomycetes root:Host-associated:Fungi 1.0 class Leotiomycetes root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 class Leotiomycetes root:Environmental:Terrestrial:Soil:Loam 1.0 class Pezizomycetes root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Pezizomycetes root:Host-associated:Plants 2.0 class Pezizomycetes root:Environmental:Terrestrial:Soil 1.0 class Pezizomycetes root:Environmental:Aquatic:Sediment 1.0 -class Pezizomycetes root:Host-associated:Plants:Root 1.0 class Pezizomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 +class Pezizomycetes root:Host-associated:Plants:Root 2.0 class Pezizomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Helotiales root:Environmental:Terrestrial:Soil:Forest soil 3.0 order Helotiales root:Host-associated:Plants 3.0 order Helotiales root:Host-associated:Mammals 1.0 -order Helotiales root:Environmental:Aquatic:Freshwater 1.0 -order Helotiales root:Host-associated:Plants:Root 2.0 +order Helotiales root:Environmental:Terrestrial:Soil 1.0 order Helotiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Helotiales root:Environmental:Aquatic:Freshwater 1.0 +order Helotiales root:Host-associated:Plants:Root 3.0 order Helotiales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +order Helotiales root:Host-associated:Fungi 1.0 order Chaetothyriales root:Environmental:Terrestrial:Soil:Forest soil 3.0 order Chaetothyriales root:Host-associated:Plants 3.0 order Chaetothyriales root:Environmental:Terrestrial:Soil 1.0 @@ -60418,24 +61913,30 @@ order Chaetothyriales root:Environmental:Aquatic:Marine:Sediment 2.0 order Chaetothyriales root:Host-associated:Plants:Root 1.0 order Chaetothyriales root:Environmental:Terrestrial:Deep subsurface 2.0 order Chaetothyriales root:Environmental:Air 1.0 +order Chaetothyriales root:Host-associated:Fungi 1.0 order Cantharellales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Cantharellales root:Host-associated:Plants 1.0 -order Cantharellales root:Host-associated:Plants:Root 1.0 order Cantharellales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Cantharellales root:Host-associated:Plants:Root 2.0 order Cantharellales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Cantharellales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 order Cantharellales root:Environmental:Air 1.0 order Thelephorales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Thelephorales root:Host-associated:Plants 2.0 order Thelephorales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Thelephorales root:Host-associated:Plants:Root 1.0 order Atheliales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Atheliales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Atheliales root:Host-associated:Plants:Root 1.0 order Atheliales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Verrucariales root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Cortinariaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 +family Cortinariaceae root:Environmental:Terrestrial:Soil 1.0 +family Cortinariaceae root:Host-associated:Plants:Root 1.0 family Cortinariaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Helotiales fam Incertae sedis root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Helotiales fam Incertae sedis root:Host-associated:Plants 1.0 +family Helotiales fam Incertae sedis root:Host-associated:Fungi 1.0 family Herpotrichiellaceae root:Environmental:Terrestrial:Soil:Forest soil 3.0 family Herpotrichiellaceae root:Host-associated:Plants 1.0 family Herpotrichiellaceae root:Environmental:Terrestrial:Soil 1.0 @@ -60443,60 +61944,76 @@ family Herpotrichiellaceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Herpotrichiellaceae root:Host-associated:Plants:Root 1.0 family Herpotrichiellaceae root:Environmental:Terrestrial:Deep subsurface 2.0 family Inocybaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 +family Inocybaceae root:Environmental:Terrestrial:Soil 1.0 family Inocybaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Myxotrichaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Myxotrichaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Clavariaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Thelephoraceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Thelephoraceae root:Host-associated:Plants 2.0 +family Thelephoraceae root:Host-associated:Plants:Root 1.0 family Tricholomataceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Tricholomataceae root:Host-associated:Plants 3.0 family Tricholomataceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Tricholomataceae root:Host-associated:Plants:Root 1.0 family Tricholomataceae root:Host-associated:Fish:Digestive system:Intestine 1.0 family Mortierellaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Mortierellaceae root:Host-associated:Mammals 1.0 family Mortierellaceae root:Host-associated:Plants:Rhizosphere 3.0 -family Mortierellaceae root:Environmental:Terrestrial:Soil 2.0 +family Mortierellaceae root:Environmental:Terrestrial:Soil 3.0 family Mortierellaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Mortierellaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 family Clavulinaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Clavulinaceae root:Host-associated:Plants 1.0 +family Clavulinaceae root:Host-associated:Plants:Root 1.0 family Clavulinaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Cortinarius root:Environmental:Terrestrial:Soil:Forest soil 2.0 +genus Cortinarius root:Host-associated:Plants:Root 1.0 genus Cortinarius root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Leohumicola root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Inocybe root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Inocybe root:Environmental:Terrestrial:Soil 1.0 genus Inocybe root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Oidiodendron root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Oidiodendron root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Mortierella root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Mortierella root:Host-associated:Mammals 1.0 genus Mortierella root:Host-associated:Plants:Rhizosphere 10.0 -genus Mortierella root:Environmental:Terrestrial:Soil 3.0 +genus Mortierella root:Environmental:Terrestrial:Soil 4.0 genus Mortierella root:Engineered:Solid waste:Composting 1.0 genus Mortierella root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Tricholoma root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Tricholoma root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Tricholoma root:Host-associated:Plants:Root 1.0 genus Tomentella root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Tomentella root:Host-associated:Plants 1.0 +genus Tomentella root:Host-associated:Plants:Root 1.0 genus Meliniomyces root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Meliniomyces root:Host-associated:Plants 1.0 genus Sebacina root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Sebacina root:Host-associated:Plants 2.0 +genus Sebacina root:Environmental:Terrestrial:Soil 1.0 +genus Sebacina root:Host-associated:Plants:Root 1.0 genus Porpoloma root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Cortinarius sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 +species Cortinarius sp root:Host-associated:Plants:Root 1.0 species Cortinarius sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Inocybe sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 +species Inocybe sp root:Environmental:Terrestrial:Soil 1.0 species Herpotrichiellaceae sp root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Helotiales sp root:Environmental:Terrestrial:Soil:Forest soil 3.0 species Helotiales sp root:Host-associated:Plants 2.0 +species Helotiales sp root:Environmental:Terrestrial:Soil 1.0 species Helotiales sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Helotiales sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Tricholoma sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 +species Tricholoma sp root:Host-associated:Plants:Root 1.0 species Oidiodendron sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Cortinariaceae sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Sebacina sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Sebacina sp root:Host-associated:Plants 2.0 +species Sebacina sp root:Environmental:Terrestrial:Soil 1.0 +species Sebacina sp root:Host-associated:Plants:Root 1.0 species Porpoloma sejunctum root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Ruhlandiella sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Yaniella root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -60505,8 +62022,8 @@ genus Yaniella root:Environmental:Terrestrial:Soil 3.0 genus Yaniella root:Engineered:Biogas plant 1.0 genus Skermania root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Skermania root:Environmental:Terrestrial:Soil 1.0 -genus Skermania root:Environmental:Terrestrial:Soil:Desert 1.0 genus Skermania root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Skermania root:Environmental:Terrestrial:Soil:Desert 1.0 genus Skermania root:Environmental:Terrestrial:Soil:Clay 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Forest soil 7.0 species CandidatusSolibacter versatilis root:Host-associated:Plants 1.0 @@ -60516,17 +62033,17 @@ species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Cont species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil 43.0 species CandidatusSolibacter versatilis root:Environmental:Aquatic:Freshwater:Lotic 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Tropical rainforest 3.0 +species CandidatusSolibacter versatilis root:Engineered:Lab enrichment 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Wetlands 4.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Grasslands 3.0 +species CandidatusSolibacter versatilis root:Host-associated:Plants:Rhizosphere:Soil 3.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Desert 3.0 species CandidatusSolibacter versatilis root:Host-associated:Plants:Root 2.0 -species CandidatusSolibacter versatilis root:Host-associated:Plants:Rhizosphere:Soil 3.0 species CandidatusSolibacter versatilis root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species CandidatusSolibacter versatilis root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Mine 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 -species CandidatusSolibacter versatilis root:Engineered:Lab enrichment 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 species CandidatusSolibacter versatilis root:Environmental:Terrestrial:Soil:Mine drainage 1.0 species Yaniella vinacea root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -60539,13 +62056,13 @@ species Geobacter lovleyi root:Environmental:Aquatic:Freshwater:Groundwater:Biof species Geobacter lovleyi root:Engineered:Wastewater:Activated Sludge 2.0 species Geobacter lovleyi root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Geobacter lovleyi root:Environmental:Terrestrial:Soil 6.0 +species Geobacter lovleyi root:Engineered:Lab enrichment 2.0 species Geobacter lovleyi root:Environmental:Terrestrial:Soil:Grasslands 2.0 -species Geobacter lovleyi root:Engineered:Lab enrichment:Defined media 1.0 species Geobacter lovleyi root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Geobacter lovleyi root:Engineered:Lab enrichment:Defined media 1.0 species Geobacter lovleyi root:Engineered:Wastewater:Industrial wastewater 1.0 species Geobacter lovleyi root:Environmental:Terrestrial:Soil:Sand 1.0 species Geobacter lovleyi root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Geobacter lovleyi root:Engineered:Lab enrichment 2.0 species Geobacter lovleyi root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 species Geobacter lovleyi root:Engineered 1.0 species Geobacter lovleyi root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -60561,8 +62078,8 @@ species DA101 debontii root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species DA101 debontii root:Engineered:Wastewater:Water and sludge 1.0 species Skermania piniformis root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Skermania piniformis root:Environmental:Terrestrial:Soil 1.0 -species Skermania piniformis root:Environmental:Terrestrial:Soil:Desert 1.0 species Skermania piniformis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Skermania piniformis root:Environmental:Terrestrial:Soil:Desert 1.0 species Skermania piniformis root:Environmental:Terrestrial:Soil:Clay 1.0 species Bradyrhizobium genosp. root:Environmental:Terrestrial:Soil:Forest soil 5.0 species Bradyrhizobium genosp. root:Host-associated:Plants 1.0 @@ -60598,11 +62115,11 @@ family Solirubrobacteraceae root:Environmental:Terrestrial:Soil:Permafrost 2.0 family Solirubrobacteraceae root:Mixed 2.0 family Solirubrobacteraceae root:Engineered:Wastewater 1.0 family Solirubrobacteraceae root:Host-associated:Plants:Rhizosphere 5.0 -family Solirubrobacteraceae root:Environmental:Terrestrial:Soil 20.0 +family Solirubrobacteraceae root:Environmental:Terrestrial:Soil 21.0 family Solirubrobacteraceae root:Environmental:Terrestrial:Soil:Grasslands 3.0 +family Solirubrobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Solirubrobacteraceae root:Engineered:Solid waste:Composting 1.0 family Solirubrobacteraceae root:Environmental:Terrestrial:Soil:Desert 2.0 -family Solirubrobacteraceae root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Solirubrobacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Rhizomicrobium root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Rhizomicrobium root:Host-associated:Plants 2.0 @@ -60662,9 +62179,9 @@ class DA052 root:Engineered:Modeled:Simulated communities (microbial mixture) 1. class DA052 root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 class DA052 root:Environmental:Terrestrial:Soil:Wetlands 3.0 class DA052 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +class DA052 root:Host-associated:Plants:Rhizosphere:Soil 2.0 class DA052 root:Engineered:Food production 1.0 class DA052 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -class DA052 root:Host-associated:Plants:Rhizosphere:Soil 2.0 class DA052 root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 class DA052 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 class DA052 root:Host-associated:Protozoa 1.0 @@ -60677,8 +62194,8 @@ order Ellin6513 root:Environmental:Terrestrial:Soil 20.0 order Ellin6513 root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 order Ellin6513 root:Environmental:Terrestrial:Soil:Wetlands 3.0 order Ellin6513 root:Environmental:Terrestrial:Soil:Grasslands 1.0 -order Ellin6513 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Ellin6513 root:Host-associated:Plants:Rhizosphere:Soil 2.0 +order Ellin6513 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 order Ellin6513 root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 order Ellin6513 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 order Ellin6513 root:Host-associated:Protozoa 1.0 @@ -60710,9 +62227,9 @@ species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil 22.0 species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil:Tropical rainforest 4.0 species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil:Wetlands 2.0 species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species CandidatusKoribacter versatilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species CandidatusKoribacter versatilis root:Host-associated:Plants:Root 2.0 species CandidatusKoribacter versatilis root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -species CandidatusKoribacter versatilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species CandidatusKoribacter versatilis root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species CandidatusKoribacter versatilis root:Environmental:Terrestrial:Soil:Crop:Agricultural land 2.0 @@ -60724,13 +62241,13 @@ species Sphingobacterium multivorum root:Engineered:Wastewater:Activated Sludge species Sphingobacterium multivorum root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Sphingobacterium multivorum root:Environmental:Terrestrial:Soil 11.0 species Sphingobacterium multivorum root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 +species Sphingobacterium multivorum root:Engineered:Lab enrichment 1.0 species Sphingobacterium multivorum root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Sphingobacterium multivorum root:Engineered:Food production:Fermented seafood 1.0 species Sphingobacterium multivorum root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species Sphingobacterium multivorum root:Engineered:Wastewater:Industrial wastewater 1.0 species Sphingobacterium multivorum root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Sphingobacterium multivorum root:Environmental:Terrestrial:Soil:Loam:Forest soil 2.0 -species Sphingobacterium multivorum root:Engineered:Lab enrichment 1.0 species Sphingobacterium multivorum root:Engineered 1.0 species Sphingobacterium multivorum root:Engineered:Bioremediation 1.0 species Photobacterium eikelboomii root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -60741,8 +62258,8 @@ species Terriglobus bradus root:Host-associated:Plants:Rhizosphere 1.0 species Terriglobus bradus root:Environmental:Terrestrial:Soil 20.0 species Terriglobus bradus root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 species Terriglobus bradus root:Environmental:Terrestrial:Soil:Wetlands 2.0 -species Terriglobus bradus root:Host-associated:Plants:Root 1.0 species Terriglobus bradus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Terriglobus bradus root:Host-associated:Plants:Root 1.0 species Terriglobus bradus root:Host-associated:Plants:Rhizosphere:Forest soil 2.0 species Terriglobus bradus root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 species Cytophagaceae bacterium JGI 0001001-B3 root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -60770,15 +62287,19 @@ family Patulibacteraceae root:Engineered:Bioremediation:Hydrocarbon 1.0 kingdom Cryptista root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Olpidiomycota root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Olpidiomycota root:Host-associated:Plants 1.0 +phylum Olpidiomycota root:Host-associated:Fungi 1.0 phylum Blastocladiomycota root:Environmental:Terrestrial:Soil:Forest soil 1.0 phylum Blastocladiomycota root:Host-associated:Plants 1.0 phylum Blastocladiomycota root:Environmental:Aquatic:Marine:Coastal 1.0 +phylum Blastocladiomycota root:Host-associated:Plants:Root 1.0 phylum Blastocladiomycota root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 phylum Basidiobolomycota root:Environmental:Terrestrial:Soil:Forest soil 1.0 +phylum Basidiobolomycota root:Environmental:Terrestrial:Soil 1.0 phylum Basidiobolomycota root:Host-associated:Fish:Digestive system:Intestine 1.0 class Geminibasidiomycetes root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Geminibasidiomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Umbelopsidomycetes root:Environmental:Terrestrial:Soil:Forest soil 1.0 +class Umbelopsidomycetes root:Environmental:Terrestrial:Soil 1.0 class Umbelopsidomycetes root:Host-associated:Plants:Rhizosphere:Soil 1.0 class Umbelopsidomycetes root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 class Rozellomycotina cls Incertae sedis root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -60786,18 +62307,22 @@ order Geminibasidiales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Geminibasidiales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Umbelopsidales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Umbelopsidales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +order Umbelopsidales root:Environmental:Terrestrial:Soil 1.0 order Mytilinidales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Mytilinidales root:Host-associated:Plants:Rhizosphere:Soil 1.0 order Mytilinidales root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 order Geastrales root:Environmental:Terrestrial:Soil:Forest soil 1.0 +order Geastrales root:Host-associated:Fungi 1.0 family Geminibasidiaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Geminibasidiaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Russulaceae root:Environmental:Terrestrial:Soil:Forest soil 2.0 family Russulaceae root:Host-associated:Plants 2.0 +family Russulaceae root:Environmental:Terrestrial:Soil 1.0 family Russulaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Russulaceae root:Host-associated:Plants:Root 1.0 family Russulaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 family Umbelopsidaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 -family Umbelopsidaceae root:Environmental:Terrestrial:Soil 1.0 +family Umbelopsidaceae root:Environmental:Terrestrial:Soil 2.0 family Gloniaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Gloniaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 family Gloniaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -60808,30 +62333,39 @@ genus Geminibasidium root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Geminibasidium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Umbelopsis root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Umbelopsis root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +genus Umbelopsis root:Environmental:Terrestrial:Soil 1.0 genus Russula root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Russula root:Host-associated:Plants 2.0 +genus Russula root:Environmental:Terrestrial:Soil 1.0 genus Russula root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Russula root:Host-associated:Plants:Root 1.0 genus Russula root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Geastrum root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Cenococcum root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Cenococcum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Cenococcum root:Host-associated:Plants:Root 1.0 genus Geoglossum root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Cladophialophora root:Environmental:Terrestrial:Soil:Forest soil 2.0 genus Cladophialophora root:Host-associated:Plants 2.0 genus Suillus root:Environmental:Terrestrial:Soil:Forest soil 1.0 +genus Suillus root:Host-associated:Fungi 1.0 species Archaeorhizomyces sp root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Archaeorhizomyces sp root:Host-associated:Plants 1.0 species Archaeorhizomyces sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Archaeorhizomyces sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Geastrum sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Umbelopsis sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 +species Umbelopsis sp root:Environmental:Terrestrial:Soil 1.0 species Russula sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Russula sp root:Host-associated:Plants 2.0 +species Russula sp root:Environmental:Terrestrial:Soil 1.0 species Russula sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Russula sp root:Host-associated:Plants:Root 1.0 species GS11 sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Rozellomycota sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Ascomycota sp root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Ascomycota sp root:Host-associated:Plants 1.0 +species Ascomycota sp root:Host-associated:Fungi 1.0 species Cenococcum geophilum root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Cenococcum geophilum root:Host-associated:Plants:Rhizosphere:Soil 1.0 species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Forest soil 2.0 @@ -60839,10 +62373,10 @@ species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Agricult species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Permafrost 1.0 species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil 14.0 species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +species CandidatusKoribacter bradus root:Engineered:Lab enrichment 1.0 species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Wetlands 1.0 species CandidatusKoribacter bradus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species CandidatusKoribacter bradus root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 -species CandidatusKoribacter bradus root:Engineered:Lab enrichment 1.0 species CandidatusKoribacter bradus root:Host-associated:Protozoa 1.0 species Pseudomonas stutzeri root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Pseudomonas stutzeri root:Environmental:Terrestrial:Soil:Contaminated 1.0 @@ -60860,6 +62394,7 @@ order Tepidisphaerales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Tepidisphaerales root:Environmental:Terrestrial:Soil:Agricultural 1.0 order Tepidisphaerales root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 order Tepidisphaerales root:Host-associated:Plants:Rhizosphere 2.0 +order Tepidisphaerales root:Environmental:Terrestrial:Soil 1.0 order Tepidisphaerales root:Environmental:Aquatic:Sediment 1.0 order Tepidisphaerales root:Host-associated:Plants:Root 1.0 order Tepidisphaerales root:Host-associated:Annelida:Digestive system 1.0 @@ -60902,8 +62437,8 @@ family mb2424 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 family mb2424 root:Host-associated:Plants:Rhizosphere 1.0 family mb2424 root:Environmental:Terrestrial:Soil 5.0 family mb2424 root:Environmental:Terrestrial:Soil:Grasslands 2.0 -family mb2424 root:Environmental:Terrestrial:Soil:Desert 1.0 family mb2424 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family mb2424 root:Environmental:Terrestrial:Soil:Desert 1.0 family mb2424 root:Engineered:Bioreactor:Continuous culture 1.0 family mb2424 root:Environmental 1.0 family mb2424 root:Host-associated:Animal 1.0 @@ -60927,16 +62462,16 @@ species Phenylobacterium henricii root:Host-associated:Human 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Agricultural 2.0 species Phenylobacterium henricii root:Host-associated:Plants:Rhizosphere 3.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil 5.0 +species Phenylobacterium henricii root:Engineered:Lab enrichment 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Phenylobacterium henricii root:Host-associated:Plants:Rhizosphere:Soil 4.0 species Phenylobacterium henricii root:Environmental:Aquatic:Freshwater 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Desert 1.0 -species Phenylobacterium henricii root:Host-associated:Plants:Rhizosphere:Soil 4.0 species Phenylobacterium henricii root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Phenylobacterium henricii root:Host-associated:Insecta:Digestive system 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Mine 1.0 species Phenylobacterium henricii root:Engineered:Wastewater:Water and sludge 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -species Phenylobacterium henricii root:Engineered:Lab enrichment 1.0 species Phenylobacterium henricii root:Environmental:Terrestrial:Soil:Mine drainage 1.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Forest soil 4.0 genus Steroidobacter root:Host-associated:Plants 3.0 @@ -60950,17 +62485,17 @@ genus Steroidobacter root:Mixed 1.0 genus Steroidobacter root:Host-associated:Human:Digestive system:Oral 2.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Contaminated 2.0 genus Steroidobacter root:Host-associated:Plants:Phylloplane 1.0 -genus Steroidobacter root:Host-associated:Plants:Rhizosphere 6.0 +genus Steroidobacter root:Host-associated:Plants:Rhizosphere 8.0 genus Steroidobacter root:Environmental:Terrestrial:Soil 38.0 genus Steroidobacter root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Steroidobacter root:Environmental:Aquatic 1.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Steroidobacter root:Host-associated:Plants:Rhizosphere:Soil 10.0 genus Steroidobacter root:Environmental:Aquatic:Marine:Coastal 1.0 genus Steroidobacter root:Engineered:Solid waste:Composting 4.0 genus Steroidobacter root:Environmental:Aquatic:Freshwater:Drinking water 1.0 genus Steroidobacter root:Host-associated:Plants:Root 4.0 -genus Steroidobacter root:Host-associated:Plants:Rhizosphere:Soil 10.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 genus Steroidobacter root:Engineered:Wastewater:Industrial wastewater 1.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -60969,6 +62504,7 @@ genus Steroidobacter root:Host-associated:Plants:Phylloplane:Endophytes 1.0 genus Steroidobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Steroidobacter root:Host-associated:Plants:Rhizome 1.0 genus Steroidobacter root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 +genus Steroidobacter root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Steroidobacter root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Steroidobacter root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 genus Steroidobacter root:Engineered:Solid waste:Composting:Grass 1.0 @@ -60983,17 +62519,6 @@ genus Methylibium root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 genus Methylibium root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Methylibium root:Engineered:Wastewater:Water and sludge 1.0 genus Methylibium root:Engineered:Bioremediation 1.0 -genus Rhodanobacter root:Environmental:Terrestrial:Soil:Forest soil 1.0 -genus Rhodanobacter root:Environmental:Terrestrial:Soil:Agricultural 1.0 -genus Rhodanobacter root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 -genus Rhodanobacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 -genus Rhodanobacter root:Host-associated:Plants:Rhizosphere 3.0 -genus Rhodanobacter root:Environmental:Terrestrial:Soil 3.0 -genus Rhodanobacter root:Engineered:Solid waste:Composting 1.0 -genus Rhodanobacter root:Engineered:Lab enrichment:Defined media 1.0 -genus Rhodanobacter root:Host-associated:Plants:Rhizosphere:Soil 2.0 -genus Rhodanobacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -genus Rhodanobacter root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 genus Luteibacter root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Luteibacter root:Host-associated:Plants:Rhizosphere 1.0 genus Luteibacter root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -61007,10 +62532,10 @@ species Steroidobacter ramosa root:Host-associated:Plants:Rhizosphere 4.0 species Steroidobacter ramosa root:Environmental:Terrestrial:Soil 10.0 species Steroidobacter ramosa root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Steroidobacter ramosa root:Environmental:Aquatic 1.0 +species Steroidobacter ramosa root:Host-associated:Plants:Rhizosphere:Soil 4.0 species Steroidobacter ramosa root:Environmental:Aquatic:Marine:Coastal 1.0 species Steroidobacter ramosa root:Environmental:Aquatic:Freshwater:Drinking water 1.0 species Steroidobacter ramosa root:Host-associated:Plants:Root 1.0 -species Steroidobacter ramosa root:Host-associated:Plants:Rhizosphere:Soil 4.0 species Steroidobacter ramosa root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 species Steroidobacter ramosa root:Host-associated:Insecta:Digestive system 1.0 species Rhodanobacter mexicana root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61034,11 +62559,13 @@ kingdom Protista root:Host-associated:Plants 1.0 kingdom Protista root:Environmental:Terrestrial:Soil 1.0 kingdom Protista root:Host-associated:Plants:Rhizosphere:Soil 1.0 phylum Bryophyta root:Environmental:Terrestrial:Soil:Forest soil 1.0 +phylum Bryophyta root:Host-associated:Fungi 1.0 class Eudicotyledonae root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Eudicotyledonae root:Host-associated:Plants 3.0 class Bryopsida root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Bryopsida root:Environmental:Terrestrial:Soil:Grasslands 1.0 order Ericales root:Environmental:Terrestrial:Soil:Forest soil 1.0 +order Ericales root:Host-associated:Plants 1.0 order Venturiales root:Environmental:Terrestrial:Soil:Forest soil 1.0 order Venturiales root:Host-associated:Plants 1.0 order Venturiales root:Environmental:Terrestrial:Deep subsurface 2.0 @@ -61055,6 +62582,7 @@ family Ericaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Ericaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Hyaloscyphaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Hyaloscyphaceae root:Host-associated:Plants 1.0 +family Hyaloscyphaceae root:Host-associated:Fungi 1.0 family Hydnodontaceae root:Environmental:Terrestrial:Soil:Forest soil 1.0 family Hydnodontaceae root:Host-associated:Plants:Root 1.0 genus Vaccinium root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61066,6 +62594,7 @@ genus Pezoloma root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Pezoloma root:Host-associated:Plants 2.0 species Meliniomyces sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Chaetothyriales sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 +species Chaetothyriales sp root:Host-associated:Fungi 1.0 species Luellia sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Pezoloma ericae root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Venturiaceae sp root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61075,8 +62604,9 @@ genus Dongia root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Dongia root:Host-associated:Plants 2.0 genus Dongia root:Environmental:Terrestrial:Soil:Agricultural 2.0 genus Dongia root:Mixed 1.0 -genus Dongia root:Host-associated:Plants:Rhizosphere 1.0 +genus Dongia root:Host-associated:Plants:Rhizosphere 3.0 genus Dongia root:Environmental:Terrestrial:Soil 4.0 +genus Dongia root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Dongia root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 genus Niastella root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Niastella root:Host-associated:Plants:Rhizosphere 3.0 @@ -61158,8 +62688,8 @@ species Rhodovastum atsumiense root:Environmental:Terrestrial:Soil:Forest soil 1 species Rhodovastum atsumiense root:Environmental:Terrestrial:Soil 2.0 species Rhodovastum atsumiense root:Environmental:Aquatic:Marine:Sediment 1.0 species Rhodovastum atsumiense root:Environmental:Aquatic:Freshwater:Lotic 1.0 -species Rhodovastum atsumiense root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Rhodovastum atsumiense root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Rhodovastum atsumiense root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Rhodovastum atsumiense root:Environmental:Aquatic:Freshwater:Wetlands:Swamp 1.0 species CandidatusSolibacter paludicola root:Environmental:Terrestrial:Soil:Forest soil 1.0 species CandidatusSolibacter paludicola root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -61225,10 +62755,10 @@ species Thiobacillus aerolata root:Environmental:Terrestrial:Soil 4.0 species Thiobacillus aerolata root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Thiobacillus aerolata root:Engineered:Wastewater:Industrial wastewater 1.0 species Geobacter mexicanus root:Environmental:Terrestrial:Soil:Forest soil 2.0 -species Geobacter mexicanus root:Engineered:Lab enrichment:Defined media 1.0 +species Geobacter mexicanus root:Engineered:Lab enrichment 1.0 species Geobacter mexicanus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Geobacter mexicanus root:Engineered:Lab enrichment:Defined media 1.0 species Geobacter mexicanus root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -species Geobacter mexicanus root:Engineered:Lab enrichment 1.0 species Lautropia alaskensis root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Lautropia alaskensis root:Host-associated:Human:Skin 1.0 species Lautropia alaskensis root:Environmental:Aquatic:Freshwater 1.0 @@ -61282,6 +62812,8 @@ family Methylocystaceae root:Environmental:Aquatic:Freshwater 1.0 family Methylocystaceae root:Environmental:Terrestrial:Soil:Desert 1.0 family Methylocystaceae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 family Methylocystaceae root:Engineered:Lab enrichment:Defined media 1.0 +family Methylocystaceae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +family Methylocystaceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Methylocystaceae root:Host-associated:Cnidaria 1.0 family Methylocystaceae root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 family SAGMA-X root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61292,8 +62824,8 @@ family SAGMA-X root:Environmental:Terrestrial:Soil:Silt 1.0 family SAGMA-X root:Environmental:Terrestrial:Soil 8.0 family SAGMA-X root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 family SAGMA-X root:Environmental:Terrestrial:Soil:Wetlands 1.0 -family SAGMA-X root:Environmental:Aquatic:Marine:Coastal 1.0 family SAGMA-X root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family SAGMA-X root:Environmental:Aquatic:Marine:Coastal 1.0 family SAGMA-X root:Host-associated:Animal 1.0 family SAGMA-X root:Environmental:Aquatic:Lentic 1.0 family SAGMA-X root:Host-associated:Protozoa 1.0 @@ -61312,11 +62844,11 @@ genus CandidatusNitrososphaera root:Environmental:Aquatic:Marine:Sediment 1.0 genus CandidatusNitrososphaera root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 genus CandidatusNitrososphaera root:Environmental:Terrestrial:Soil:Wetlands 3.0 genus CandidatusNitrososphaera root:Environmental:Terrestrial:Soil:Grasslands 3.0 +genus CandidatusNitrososphaera root:Host-associated:Plants:Rhizosphere:Soil 8.0 genus CandidatusNitrososphaera root:Environmental:Aquatic:Marine:Coastal 1.0 genus CandidatusNitrososphaera root:Environmental:Terrestrial:Soil:Desert 2.0 genus CandidatusNitrososphaera root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus CandidatusNitrososphaera root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus CandidatusNitrososphaera root:Host-associated:Plants:Rhizosphere:Soil 8.0 genus CandidatusNitrososphaera root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 genus CandidatusNitrososphaera root:Host-associated 1.0 genus CandidatusNitrososphaera root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 @@ -61342,9 +62874,9 @@ species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Soil 1 species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Soil:Grasslands 3.0 +species CandidatusNitrososphaera gargensis root:Host-associated:Plants:Rhizosphere:Soil 4.0 species CandidatusNitrososphaera gargensis root:Environmental:Aquatic:Marine:Coastal 1.0 species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Soil:Desert 1.0 -species CandidatusNitrososphaera gargensis root:Host-associated:Plants:Rhizosphere:Soil 4.0 species CandidatusNitrososphaera gargensis root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 species CandidatusNitrososphaera gargensis root:Environmental:Terrestrial:Volcanic 1.0 species CandidatusNitrososphaera gargensis root:Host-associated:Protozoa 1.0 @@ -61374,9 +62906,9 @@ genus Granulicella root:Engineered:Solid waste:Composting 1.0 genus Granulicella root:Engineered:Lab enrichment:Defined media 1.0 genus Granulicella root:Host-associated:Plants:Root 1.0 genus Wautersiella root:Environmental:Terrestrial:Soil:Forest soil 2.0 +genus Wautersiella root:Engineered:Lab enrichment 1.0 genus Wautersiella root:Engineered:Solid waste:Composting 2.0 genus Wautersiella root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -genus Wautersiella root:Engineered:Lab enrichment 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Forest soil 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Agricultural 4.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Permafrost 2.0 @@ -61386,10 +62918,10 @@ species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil 14. species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Wetlands 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species CandidatusNitrososphaera SCA1170 root:Host-associated:Plants:Rhizosphere:Soil 3.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Aquatic:Marine:Coastal 1.0 species CandidatusNitrososphaera SCA1170 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -species CandidatusNitrososphaera SCA1170 root:Host-associated:Plants:Rhizosphere:Soil 3.0 species CandidatusNitrososphaera SCA1170 root:Host-associated 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Clay 1.0 species CandidatusNitrososphaera SCA1170 root:Environmental:Terrestrial:Soil:Boreal forest 1.0 @@ -61435,6 +62967,7 @@ species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Environmental:Aquatic:F species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Mixed 1.0 species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Environmental:Terrestrial:Soil 8.0 species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Environmental:Terrestrial:Soil:Tropical rainforest 2.0 +species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Host-associated:Plants:Root 1.0 species Thermomonosporaceae bacterium YE4-D4-16-CH2 root:Environmental:Terrestrial:Soil:Loam 1.0 species bacterium enrichment culture clone auto67 4W root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61490,8 +63023,8 @@ species KSA1 multivorum root:Engineered:Bioreactor 1.0 species KSA1 multivorum root:Host-associated:Plants:Rhizosphere 3.0 species KSA1 multivorum root:Environmental:Terrestrial:Soil 11.0 species KSA1 multivorum root:Environmental:Terrestrial:Soil:Grasslands 2.0 -species KSA1 multivorum root:Engineered:Solid waste:Composting 1.0 species KSA1 multivorum root:Host-associated:Plants:Rhizosphere:Soil 3.0 +species KSA1 multivorum root:Engineered:Solid waste:Composting 1.0 species KSA1 multivorum root:Host-associated 1.0 species KSA1 multivorum root:Environmental:Aquatic:Freshwater:Ice:Glacier 2.0 species KSA1 multivorum root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -61504,8 +63037,8 @@ species Tanticharoenia sakaeratensis root:Environmental:Terrestrial:Soil:Crop:Ag species Rubricoccus multivorum root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Rubricoccus multivorum root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Rubricoccus multivorum root:Environmental:Terrestrial:Soil 4.0 -species Rubricoccus multivorum root:Engineered:Solid waste:Composting 3.0 species Rubricoccus multivorum root:Host-associated:Plants:Rhizosphere:Soil 2.0 +species Rubricoccus multivorum root:Engineered:Solid waste:Composting 3.0 species Rubricoccus multivorum root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Wautersiella irgensii root:Environmental:Terrestrial:Soil:Forest soil 1.0 class Ellin6529 root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61535,8 +63068,8 @@ species Steroidobacter effusa root:Environmental:Terrestrial:Soil:Agricultural 2 species Steroidobacter effusa root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Steroidobacter effusa root:Host-associated:Plants:Phylloplane 1.0 species Steroidobacter effusa root:Environmental:Terrestrial:Soil 2.0 -species Steroidobacter effusa root:Host-associated:Plants:Root 1.0 species Steroidobacter effusa root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Steroidobacter effusa root:Host-associated:Plants:Root 1.0 species Geobacter bacteriovorus root:Environmental:Terrestrial:Soil:Forest soil 2.0 species Geobacter bacteriovorus root:Environmental:Terrestrial:Soil:Agricultural 2.0 species Geobacter bacteriovorus root:Host-associated:Plants:Rhizosphere 1.0 @@ -61568,8 +63101,8 @@ species Paenibacillus selenatarsenatis root:Environmental:Terrestrial:Soil:Fores species Steroidobacter viridiflava root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Steroidobacter viridiflava root:Environmental:Terrestrial:Soil:Agricultural 4.0 species Steroidobacter viridiflava root:Environmental:Terrestrial:Soil 13.0 -species Steroidobacter viridiflava root:Host-associated:Plants:Root 1.0 species Steroidobacter viridiflava root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Steroidobacter viridiflava root:Host-associated:Plants:Root 1.0 species Steroidobacter viridiflava root:Environmental:Terrestrial:Soil:Mine 1.0 species Steroidobacter viridiflava root:Host-associated:Plants:Phylloplane:Endophytes 1.0 species Steroidobacter viridiflava root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -61595,22 +63128,22 @@ species Enterococcus succinus root:Host-associated:Human:Circulatory system 1.0 genus Salinibacterium root:Environmental:Terrestrial:Soil:Forest soil 1.0 genus Salinibacterium root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Salinibacterium root:Environmental:Terrestrial:Soil 3.0 +genus Salinibacterium root:Engineered:Lab enrichment 1.0 genus Salinibacterium root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Salinibacterium root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 genus Salinibacterium root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 genus Salinibacterium root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Salinibacterium root:Engineered:Lab enrichment 1.0 species Janthinobacterium paradoxus root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Janthinobacterium paradoxus root:Engineered:Food production:Fermented beverages 1.0 species Janthinobacterium paradoxus root:Environmental:Aquatic:Freshwater:Ice 1.0 species Salinibacterium caricis root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Salinibacterium caricis root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Salinibacterium caricis root:Environmental:Terrestrial:Soil 3.0 +species Salinibacterium caricis root:Engineered:Lab enrichment 1.0 species Salinibacterium caricis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Salinibacterium caricis root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Salinibacterium caricis root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Salinibacterium caricis root:Environmental:Aquatic:Freshwater:Ice 1.0 -species Salinibacterium caricis root:Engineered:Lab enrichment 1.0 species Burkholderia microcystinivorans root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Burkholderia microcystinivorans root:Environmental 1.0 species Mesorhizobium organophilum root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61631,8 +63164,8 @@ species Rubrobacter rubra root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Rubrobacter rubra root:Environmental:Terrestrial:Soil 5.0 species Rubrobacter rubra root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Rubrobacter rubra root:Environmental:Terrestrial:Soil:Grasslands 1.0 -species Rubrobacter rubra root:Environmental:Terrestrial:Soil:Desert 1.0 species Rubrobacter rubra root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Rubrobacter rubra root:Environmental:Terrestrial:Soil:Desert 1.0 species C1 B004 lapsinanis root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Leptotrichia dispar root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Kaistobacter natatoria root:Environmental:Terrestrial:Soil:Forest soil 1.0 @@ -61641,8 +63174,8 @@ species Kaistobacter natatoria root:Environmental:Terrestrial:Soil:Agricultural species Kaistobacter natatoria root:Host-associated:Plants:Phylloplane 2.0 species Kaistobacter natatoria root:Host-associated:Plants:Rhizosphere 3.0 species Kaistobacter natatoria root:Environmental:Terrestrial:Soil 4.0 -species Kaistobacter natatoria root:Environmental:Terrestrial:Soil:Desert 1.0 species Kaistobacter natatoria root:Host-associated:Plants:Rhizosphere:Soil 3.0 +species Kaistobacter natatoria root:Environmental:Terrestrial:Soil:Desert 1.0 species Kaistobacter natatoria root:Environmental:Terrestrial:Soil:Mine 1.0 species Phenylobacterium hamadaniensis root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Phenylobacterium hamadaniensis root:Environmental:Terrestrial:Soil:Agricultural 3.0 @@ -61656,9 +63189,9 @@ species Rubricoccus cryoconitis root:Environmental:Terrestrial:Soil:Forest soil species Rubricoccus cryoconitis root:Environmental:Terrestrial:Soil 1.0 species Lutibacterium ramosum root:Environmental:Terrestrial:Soil:Forest soil 1.0 species Lutibacterium ramosum root:Environmental:Terrestrial:Soil:Contaminated 1.0 +species Lutibacterium ramosum root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Lutibacterium ramosum root:Environmental:Aquatic:Freshwater 1.0 species Lutibacterium ramosum root:Environmental:Aquatic:Freshwater:Drinking water 1.0 -species Lutibacterium ramosum root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Lutibacterium ramosum root:Host-associated:Insecta:Digestive system 1.0 species Lutibacterium ramosum root:Host-associated 1.0 species Lutibacterium ramosum root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -61683,6 +63216,7 @@ genus Bosea root:Engineered:Bioremediation 1.0 genus Sandarakinorhabdus root:Environmental:Aquatic:Lentic:Brackish 4.0 genus Sandarakinorhabdus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Blastomonas root:Environmental:Aquatic:Lentic:Brackish 2.0 +genus Blastomonas root:Environmental:Aquatic:Freshwater 1.0 genus Caulobacter root:Environmental:Aquatic:Lentic:Brackish 1.0 genus Caulobacter root:Host-associated:Plants:Phylloplane 1.0 genus Caulobacter root:Host-associated:Plants:Rhizosphere 4.0 @@ -61719,6 +63253,7 @@ genus Candidatus Promineofilum root:Engineered:Wastewater:Activated Sludge 10.0 genus Candidatus Promineofilum root:Engineered:Wastewater 4.0 genus Candidatus Promineofilum root:Environmental:Aquatic:Marine:Sediment 2.0 genus Candidatus Promineofilum root:Engineered:Wastewater:Industrial wastewater 3.0 +genus Candidatus Promineofilum root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Ancora sagittata root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Desulfatitalea sp. BRH c12 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Desulfatitalea sp. BRH c12 root:Environmental:Aquatic:Estuary:Sediment 2.0 @@ -61789,6 +63324,7 @@ species Methanoculleus sp. SDB root:Environmental:Aquatic:Marine:Wetlands:Sedime species Verrucomicrobia bacterium ADurb.Bin118 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Verrucomicrobia bacterium ADurb.Bin118 root:Engineered:Bioreactor 1.0 species Verrucomicrobia bacterium ADurb.Bin118 root:Engineered:Biogas plant:Wet fermentation 1.0 +species Verrucomicrobia bacterium ADurb.Bin118 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Haloferula helveola root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Haloferula helveola root:Host-associated:Plants:Rhizosphere 1.0 species Haloferula helveola root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -61799,19 +63335,19 @@ species saltmarsh clone LCP-67 root:Environmental:Aquatic:Estuary:Sediment 1.0 species saltmarsh clone LCP-67 root:Environmental:Aquatic:Marine:Coastal:Sediment 4.0 species saltmarsh clone LCP-67 root:Environmental:Aquatic:Marine:Sediment 3.0 species saltmarsh clone LCP-67 root:Environmental:Aquatic:Sediment 1.0 +species saltmarsh clone LCP-67 root:Engineered:Lab enrichment 1.0 species saltmarsh clone LCP-67 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species saltmarsh clone LCP-67 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -species saltmarsh clone LCP-67 root:Engineered:Lab enrichment 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species bacterium YC-LK-LKJ38 root:Host-associated:Plants:Rhizosphere 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Coastal:Sediment 2.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Sediment 4.0 +species bacterium YC-LK-LKJ38 root:Engineered:Lab enrichment 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Coastal 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species bacterium YC-LK-LKJ38 root:Host-associated:Invertebrates:Echinodermata 1.0 -species bacterium YC-LK-LKJ38 root:Engineered:Lab enrichment 1.0 species bacterium YC-LK-LKJ38 root:Environmental:Aquatic:Marine:Volcanic 1.0 species planctomycete DDSe3016 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 species planctomycete DDSe3016 root:Environmental:Aquatic 1.0 @@ -61857,9 +63393,25 @@ species Halothiobacillus kellyi root:Environmental:Aquatic:Marine:Coastal:Sedime species Halothiobacillus kellyi root:Environmental:Aquatic:Marine:Sediment 2.0 species Halothiobacillus kellyi root:Environmental:Aquatic:Sediment 1.0 species Thiorhodovibrio sp. 970 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +family Promesostomidae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Salinispira root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Salinispira root:Host-associated:Porifera 1.0 +genus Congregibacter root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Congregibacter root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Congregibacter root:Host-associated:Invertebrates 1.0 +genus Ephemera root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Ephemera root:Environmental:Aquatic:Estuary:Sediment 1.0 +genus Ephemera root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +genus Ephemera root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 +species Algoriphagus resistens root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Phormidium tenue root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Promesostoma cochleare root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Salinispira pacifica root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Salinispira pacifica root:Host-associated:Porifera 1.0 +species Spirochaeta sp. LUC14 002 19 P3 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Rhodocyclus root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 -genus Rhodocyclus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Rhodocyclus root:Engineered:Lab enrichment 1.0 +genus Rhodocyclus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Rhodocyclus root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 species WCHB1-05 gelidilacus root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Shewanella turnerae root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -61899,6 +63451,7 @@ species Chloroflexi bacterium RBG 13 46 14 root:Environmental:Aquatic:Marine:Int genus Bythopirellula root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Bythopirellula root:Environmental:Aquatic:Marine:Sediment 2.0 genus Bythopirellula root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 +genus Bythopirellula root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Halarchaeum root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 2.0 genus Halarchaeum root:Environmental:Aquatic:Marine:Sediment 1.0 species Halolamina sediminis root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 @@ -61987,15 +63540,18 @@ species Psychroflexus salarius root:Environmental:Aquatic:Marine:Intertidal zone species Psychroflexus salarius root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Desulfospira root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 genus Tharyx root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +genus Tharyx root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Tharyx root:Environmental:Aquatic:Marine:Sediment 1.0 genus Tharyx root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 species Methanococcoides burtonii root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Tharyx sp. THS-2012 root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 +species Tharyx sp. THS-2012 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Tharyx sp. THS-2012 root:Environmental:Aquatic:Marine:Sediment 1.0 species Desulfospira joergensenii root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh 1.0 species Desulfospira joergensenii root:Environmental:Aquatic:Marine:Sediment 1.0 genus Enhydrobacter root:Host-associated:Human 1.0 genus Enhydrobacter root:Host-associated:Human:Skin 1.0 +genus Enhydrobacter root:Host-associated:Mammals 1.0 genus Enhydrobacter root:Engineered:Wastewater 1.0 genus Enhydrobacter root:Engineered:Food production:Dairy products 1.0 genus Enhydrobacter root:Host-associated:Plants:Rhizosphere 1.0 @@ -62072,6 +63628,7 @@ genus Actinomadura root:Host-associated:Human 1.0 genus Actinomadura root:Host-associated:Plants 1.0 genus Actinomadura root:Environmental:Terrestrial:Soil:Agricultural 5.0 genus Actinomadura root:Engineered:Wastewater 1.0 +genus Actinomadura root:Host-associated:Plants:Rhizosphere 1.0 genus Actinomadura root:Environmental:Terrestrial:Soil 4.0 genus Actinomadura root:Environmental:Terrestrial:Soil:Grasslands 1.0 genus Actinomadura root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -62087,8 +63644,8 @@ species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil:Agric species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil 8.0 species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil:Grasslands 2.0 -species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil:Desert 1.0 species CandidatusSolibacter gargensis root:Host-associated:Plants:Rhizosphere:Soil 2.0 +species CandidatusSolibacter gargensis root:Environmental:Terrestrial:Soil:Desert 1.0 species CandidatusKoribacter gargensis root:Host-associated:Human 1.0 species CandidatusKoribacter gargensis root:Host-associated:Plants:Rhizosphere 1.0 species CandidatusKoribacter gargensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -62135,6 +63692,7 @@ species Buchnera aphidicola root:Host-associated:Insecta:Digestive system 1.0 species Buchnera aphidicola root:Engineered:Built environment 1.0 species Buchnera aphidicola root:Host-associated:Birds 1.0 species TM7 bacterium human oral taxon HOT-870 root:Host-associated:Human 1.0 +species TM7 bacterium human oral taxon HOT-870 root:Host-associated:Insecta 1.0 family Cardiobacteriaceae root:Host-associated:Human 1.0 family Cardiobacteriaceae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 family Cardiobacteriaceae root:Host-associated:Mammals:Skin 1.0 @@ -62170,7 +63728,7 @@ species Bacteroides alkaliphilus root:Host-associated:Human 1.0 species Veillonella atypica root:Host-associated:Human 1.0 species Veillonella atypica root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 species Streptococcus sp. oral taxon G59 root:Host-associated:Human 1.0 -species Prevotella disiens root:Host-associated:Human 1.0 +species Prevotella disiens root:Host-associated:Human 2.0 species Prevotella disiens root:Host-associated:Human:Reproductive system:Vagina 2.0 species Sneathia sanguinegens root:Host-associated:Human 2.0 species Sneathia sanguinegens root:Host-associated:Human:Reproductive system:Vagina:posterior fornix 1.0 @@ -62185,6 +63743,9 @@ species Bacteroidales genomosp. P2 oral clone MB1 G13 root:Host-associated:Human species Bacteroidales genomosp. P2 oral clone MB1 G13 root:Host-associated:Human:Digestive system:Oral:buccal mucosa 1.0 species Bacteroidales genomosp. P2 oral clone MB1 G13 root:Host-associated:Human:Respiratory system:Nasopharyngeal:Pharynx 1.0 species Tropheryma whipplei root:Host-associated:Human 1.0 +species TM7 phylum sp. oral clone DR034 root:Host-associated:Human 1.0 +species Aerococcus christensenii root:Host-associated:Human 1.0 +species Aerococcus christensenii root:Host-associated:Human:Reproductive system:Vagina 1.0 species Actinomyces arboriphilus root:Host-associated:Human 1.0 species Actinomyces arboriphilus root:Host-associated:Human:Digestive system:Oral 1.0 species Leptotrichia somerae root:Host-associated:Human 1.0 @@ -62203,6 +63764,7 @@ species Prevotella sp. oral clone GI032 root:Host-associated:Human 1.0 genus Ureaplasma root:Host-associated:Human 1.0 genus Ureaplasma root:Host-associated:Human:Reproductive system:Vagina 2.0 genus Ureaplasma root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus Ureaplasma root:Host-associated:Fish:Digestive system 1.0 genus Ureaplasma root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 species Gemella asaccharolytica root:Host-associated:Human 1.0 species Gemella asaccharolytica root:Host-associated:Human:Reproductive system:Vagina 1.0 @@ -62243,6 +63805,7 @@ species Rhodopila globiformis root:Host-associated:Human 1.0 species Rhodopila globiformis root:Environmental:Terrestrial:Soil:Agricultural 3.0 species Rhodopila globiformis root:Host-associated:Amphibia 1.0 species Rhodopila globiformis root:Environmental:Terrestrial:Soil 4.0 +species Rhodopila globiformis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Rhodopila globiformis root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 species Coriobacteriaceae bacterium CHKCI002 root:Host-associated:Human 1.0 species Coriobacteriaceae bacterium CHKCI002 root:Host-associated:Birds:Digestive system:Ceca 1.0 @@ -62270,8 +63833,11 @@ family Rhytismataceae root:Host-associated:Plants:Root 1.0 family Rhytismataceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Leotiaceae root:Host-associated:Plants 2.0 family Sebacinaceae root:Host-associated:Plants 2.0 +family Sebacinaceae root:Environmental:Terrestrial:Soil 1.0 +family Sebacinaceae root:Host-associated:Plants:Root 1.0 genus Lactarius root:Host-associated:Plants 2.0 genus Lactarius root:Environmental:Terrestrial:Soil 1.0 +genus Lactarius root:Host-associated:Plants:Root 1.0 genus Lactarius root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Lachnum root:Host-associated:Plants 1.0 genus Lachnellula root:Host-associated:Plants 1.0 @@ -62281,11 +63847,13 @@ species Cephalothecaceae sp root:Host-associated:Plants 2.0 species Lachnellula sp root:Host-associated:Plants 1.0 species Glomeromycetes sp root:Host-associated:Plants 1.0 species Thelephoraceae sp root:Host-associated:Plants 2.0 +species Thelephoraceae sp root:Host-associated:Plants:Root 1.0 species Hyaloscyphaceae sp root:Host-associated:Plants 1.0 species Glomeraceae sp root:Host-associated:Plants 2.0 class Pucciniomycetes root:Host-associated:Plants 11.0 class Pucciniomycetes root:Engineered:Bioreactor 1.0 class Pucciniomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 +class Pucciniomycetes root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Pucciniomycetes root:Engineered:Built environment 1.0 class Taphrinomycetes root:Host-associated:Plants 2.0 class Taphrinomycetes root:Host-associated:Plants:Phylloplane 1.0 @@ -62293,11 +63861,13 @@ class Taphrinomycetes root:Environmental:Aquatic:Marine:Sediment 1.0 order Pucciniales root:Host-associated:Plants 11.0 order Pucciniales root:Engineered:Bioreactor 1.0 order Pucciniales root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Pucciniales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Taphrinales root:Host-associated:Plants 2.0 order Taphrinales root:Host-associated:Plants:Phylloplane 1.0 order Taphrinales root:Environmental:Aquatic:Marine:Sediment 1.0 family Cladosporiaceae root:Host-associated:Plants 1.0 family Cladosporiaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Cladosporiaceae root:Engineered:Lab enrichment 1.0 family Pucciniaceae root:Host-associated:Plants 7.0 family Pucciniaceae root:Engineered:Bioreactor 1.0 family Taphrinaceae root:Host-associated:Plants 2.0 @@ -62318,6 +63888,7 @@ species Graphiopsis chlorocephala root:Host-associated:Plants 1.0 species Oryza meyeriana root:Host-associated:Plants 38.0 species Oryza meyeriana root:Host-associated:Plants:Phylloplane 6.0 species Oryza meyeriana root:Engineered:Food production 1.0 +species Oryza meyeriana root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 species Taphrina populina root:Host-associated:Plants 2.0 species Taphrina populina root:Host-associated:Plants:Phylloplane 1.0 order Tilletiales root:Host-associated:Plants 2.0 @@ -62382,7 +63953,7 @@ genus Pantoea root:Host-associated:Plants:Rhizosphere 1.0 genus Pantoea root:Environmental:Aquatic:Marine:Sediment 1.0 genus Pantoea root:Engineered:Food production 1.0 genus Pantoea root:Host-associated:Insecta:Digestive system 1.0 -genus Pantoea root:Engineered:Built environment 1.0 +genus Pantoea root:Engineered:Built environment 2.0 genus Penicillium root:Host-associated:Plants 1.0 genus Penicillium root:Host-associated:Plants:Rhizosphere 1.0 genus Penicillium root:Environmental:Terrestrial:Soil 1.0 @@ -62558,16 +64129,19 @@ species Aquihabitans daechungensis root:Host-associated:Plants 1.0 species Aquihabitans daechungensis root:Host-associated:Plants:Rhizosphere 1.0 species Aquihabitans daechungensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Aquihabitans daechungensis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Aquihabitans daechungensis root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 order Streptosporangiales root:Host-associated:Plants 4.0 order Streptosporangiales root:Engineered:Bioreactor 11.0 order Streptosporangiales root:Engineered:Wastewater 1.0 order Streptosporangiales root:Environmental:Terrestrial:Soil:Contaminated 1.0 +order Streptosporangiales root:Host-associated:Plants:Rhizosphere 1.0 order Streptosporangiales root:Environmental:Aquatic:Sediment 1.0 order Streptosporangiales root:Engineered:Solid waste:Composting 6.0 family Thermomonosporaceae root:Host-associated:Plants 1.0 family Thermomonosporaceae root:Engineered:Bioreactor 7.0 family Thermomonosporaceae root:Engineered:Wastewater 1.0 family Thermomonosporaceae root:Host-associated:Human:Digestive system:Oral 1.0 +family Thermomonosporaceae root:Host-associated:Plants:Rhizosphere 1.0 family Thermomonosporaceae root:Environmental:Terrestrial:Soil 1.0 family Thermomonosporaceae root:Engineered:Solid waste:Composting 2.0 family Thermomonosporaceae root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -62577,7 +64151,7 @@ family Dicyrtomidae root:Host-associated:Plants 1.0 order Geodermatophilales root:Host-associated:Plants 1.0 order Geodermatophilales root:Environmental:Aquatic:Marine:Sediment 1.0 order Geodermatophilales root:Environmental:Terrestrial:Soil:Grasslands 1.0 -order Geodermatophilales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Geodermatophilales root:Host-associated:Plants:Rhizosphere:Soil 2.0 family Frankiaceae root:Host-associated:Plants 2.0 family Frankiaceae root:Environmental:Terrestrial:Soil 2.0 genus Marmoricola root:Host-associated:Plants 1.0 @@ -62607,14 +64181,19 @@ species Jatrophihabitans sp. root:Host-associated:Plants 1.0 species Streptomyces sp. SMS 10 root:Host-associated:Plants 1.0 species Streptomyces sp. SMS 10 root:Host-associated:Human:Skin 1.0 order Glycomycetales root:Host-associated:Plants 1.0 +order Glycomycetales root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Glycomycetaceae root:Host-associated:Plants 1.0 +family Glycomycetaceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Glycomyces root:Host-associated:Plants 1.0 genus Glycomyces root:Engineered:Solid waste:Composting 1.0 +genus Glycomyces root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Liberibacter root:Host-associated:Plants 1.0 genus Ammopiptanthus root:Host-associated:Plants 1.0 genus Ammopiptanthus root:Engineered:Food production:Fermented beverages 1.0 +genus Ammopiptanthus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Ammopiptanthus root:Environmental:Terrestrial:Soil 1.0 genus Ammopiptanthus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Ammopiptanthus root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Ammopiptanthus root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 genus Ammopiptanthus root:Host-associated:Fish:Digestive system:Intestine 1.0 genus Ammopiptanthus root:Host-associated:Microbial:Bacteria 1.0 @@ -62624,11 +64203,13 @@ genus Chitinophaga root:Mixed 1.0 genus Chitinophaga root:Host-associated:Mammals 3.0 genus Chitinophaga root:Host-associated:Plants:Rhizosphere 4.0 genus Chitinophaga root:Environmental:Terrestrial:Soil 3.0 +genus Chitinophaga root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Chitinophaga root:Host-associated:Plants:Root 1.0 genus Chitinophaga root:Environmental:Terrestrial:Deep subsurface 4.0 -genus Chitinophaga root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Candidatus Profftella root:Host-associated:Plants 1.0 -genus Candidatus Profftella root:Engineered:Built environment 1.0 +genus Candidatus Profftella root:Host-associated:Mammals 1.0 +genus Candidatus Profftella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +genus Candidatus Profftella root:Engineered:Built environment 2.0 species Citrus medica root:Host-associated:Plants 1.0 species Hordeum vulgare subsp. vulgare (domesticated barley) root:Host-associated:Plants 1.0 species Gossypium arboreum root:Host-associated:Plants 2.0 @@ -62671,8 +64252,8 @@ species Nelumbo nucifera root:Host-associated:Human:Skin 1.0 species Nelumbo nucifera root:Host-associated:Plants:Phylloplane 2.0 species Nelumbo nucifera root:Environmental:Terrestrial:Soil 1.0 species Nelumbo nucifera root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -species Nelumbo nucifera root:Engineered:Food production 1.0 species Nelumbo nucifera root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Nelumbo nucifera root:Engineered:Food production 1.0 species Nelumbo nucifera root:Host-associated:Fish:Digestive system:Foregut 1.0 species Nelumbo nucifera root:Engineered 1.0 species Nelumbo nucifera root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 @@ -62695,12 +64276,14 @@ species Humulus lupulus root:Host-associated:Plants 1.0 species Humulus lupulus root:Environmental:Aquatic:Freshwater 1.0 species Silene sartorii root:Host-associated:Plants 1.0 order Filobasidiales root:Host-associated:Plants 2.0 +order Filobasidiales root:Environmental:Terrestrial:Soil 1.0 order Filobasidiales root:Environmental:Aquatic:Marine:Sediment 1.0 order Filobasidiales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Filobasidiales root:Environmental:Air 1.0 species Sphingomonas sp. CCH9-F2 root:Host-associated:Plants 1.0 -order Acidiferrobacterales root:Host-associated:Plants 1.0 +order Acidiferrobacterales root:Host-associated:Plants 2.0 order Acidiferrobacterales root:Engineered:Bioreactor 1.0 +order Acidiferrobacterales root:Host-associated:Human:Digestive system:Intestine 1.0 order Acidiferrobacterales root:Environmental:Terrestrial:Soil 1.0 order Acidiferrobacterales root:Host-associated:Human:Digestive system 1.0 order Acidiferrobacterales root:Engineered:Solid waste:Composting 2.0 @@ -62712,23 +64295,24 @@ order Oribatida root:Host-associated:Plants:Rhizosphere 1.0 family Trhypochthoniidae root:Host-associated:Plants 1.0 genus Acrobeloides root:Host-associated:Plants 1.0 genus Acrobeloides root:Host-associated:Plants:Rhizosphere 3.0 -genus Rhizobium root:Host-associated:Plants 1.0 +genus Rhizobium root:Host-associated:Plants 2.0 genus Rhizobium root:Engineered:Bioreactor 1.0 genus Rhizobium root:Host-associated:Amphibia 1.0 genus Rhizobium root:Host-associated:Plants:Phylloplane 1.0 genus Rhizobium root:Host-associated:Plants:Rhizosphere 9.0 genus Rhizobium root:Environmental:Terrestrial:Soil 2.0 -genus Rhizobium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Rhizobium root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 +genus Rhizobium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Rhizobium root:Host-associated:Human:Digestive system 1.0 genus Rhizobium root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Rhizobium root:Host-associated:Plants:Root 1.0 -genus Rhizobium root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Rhizobium root:Environmental:Aquatic:Marine:Brackish 2.0 genus Rhizobium root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 species Acrobeloides maximus root:Host-associated:Plants 2.0 species Acrobeloides maximus root:Host-associated:Plants:Rhizosphere 7.0 species Dongia sp. URHE0060 root:Host-associated:Plants 2.0 species Dongia sp. URHE0060 root:Host-associated:Plants:Rhizosphere 2.0 +species Dongia sp. URHE0060 root:Environmental:Terrestrial:Soil 1.0 family SC3-41 root:Host-associated:Plants 1.0 family JdFBGBact root:Host-associated:Plants 1.0 genus Xanthobacter root:Host-associated:Plants 1.0 @@ -62772,8 +64356,8 @@ species Lilium hybrid cultivar root:Host-associated:Plants 1.0 species Dickeya solani root:Host-associated:Plants 1.0 species Edwardsiella ictaluri root:Host-associated:Plants 1.0 species Morganella morganii root:Host-associated:Plants 1.0 -species Morganella morganii root:Host-associated:Human:Digestive system 1.0 species Morganella morganii root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Morganella morganii root:Host-associated:Human:Digestive system 1.0 species Morganella morganii root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Morganella morganii root:Host-associated:Birds 1.0 species Morganella morganii root:Environmental:Terrestrial:Soil:Clay:Oil-contaminated 1.0 @@ -62827,9 +64411,9 @@ genus Kouleothrix root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Kouleothrix root:Host-associated:Plants:Rhizosphere 2.0 genus Kouleothrix root:Environmental:Terrestrial:Soil 5.0 genus Kouleothrix root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Kouleothrix root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Kouleothrix root:Host-associated:Plants:Root 1.0 genus Kouleothrix root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Kouleothrix root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Kouleothrix root:Engineered:Wastewater:Water and sludge 1.0 genus Kouleothrix root:Environmental:Terrestrial:Soil:Mine drainage 1.0 species Rubrobacter aerofaciens root:Host-associated:Plants 1.0 @@ -62936,7 +64520,8 @@ species Rhodococcus ruber root:Host-associated:Plants:Rhizosphere:Soil 2.0 order Tremellales root:Host-associated:Plants 1.0 order Tremellales root:Host-associated:Mammals 1.0 order Tremellales root:Engineered:Food production:Fermented beverages 1.0 -order Tremellales root:Environmental:Terrestrial:Soil 1.0 +order Tremellales root:Environmental:Terrestrial:Soil 2.0 +order Tremellales root:Engineered:Lab enrichment 1.0 order Tremellales root:Engineered:Built environment 1.0 order Tremellales root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 order Tremellales root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 @@ -63032,8 +64617,8 @@ species Steroidobacter flexibilis root:Engineered:Wastewater:Activated Sludge 1. species Steroidobacter flexibilis root:Host-associated:Plants:Rhizosphere 1.0 species Steroidobacter flexibilis root:Environmental:Terrestrial:Soil 3.0 species Steroidobacter flexibilis root:Environmental:Terrestrial:Soil:Grasslands 1.0 -species Steroidobacter flexibilis root:Engineered:Solid waste:Composting 1.0 species Steroidobacter flexibilis root:Host-associated:Plants:Rhizosphere:Soil 2.0 +species Steroidobacter flexibilis root:Engineered:Solid waste:Composting 1.0 species Syntrophobacter adipica root:Host-associated:Plants 1.0 species Syntrophobacter adipica root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Syntrophobacter adipica root:Environmental:Terrestrial:Soil 2.0 @@ -63076,6 +64661,7 @@ order Pezizales root:Environmental:Terrestrial:Soil:Clay 1.0 order Phacidiales root:Host-associated:Plants 1.0 order Pertusariales root:Host-associated:Plants 1.0 order Lecanorales root:Host-associated:Plants 1.0 +order Lecanorales root:Host-associated:Fungi 1.0 family Sympoventuriaceae root:Host-associated:Plants 1.0 family Sympoventuriaceae root:Environmental:Terrestrial:Deep subsurface 3.0 family Sympoventuriaceae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 @@ -63083,10 +64669,12 @@ family Sarcosomataceae root:Host-associated:Plants 1.0 family Incertae sedis root:Host-associated:Plants 1.0 family Incertae sedis root:Environmental:Terrestrial:Soil 1.0 family Incertae sedis root:Host-associated:Fish:Digestive system:Intestine 1.0 +family Incertae sedis root:Host-associated:Fungi 1.0 family Dermateaceae root:Host-associated:Plants 1.0 family Dermateaceae root:Host-associated:Plants:Root 1.0 family Crepidotaceae root:Host-associated:Plants 1.0 genus Lophodermium root:Host-associated:Plants 1.0 +genus Lophodermium root:Host-associated:Fungi 1.0 genus Scolecobasidium root:Host-associated:Plants 1.0 genus Pseudoplectania root:Host-associated:Plants 1.0 genus Vestigium root:Host-associated:Plants 1.0 @@ -63129,13 +64717,6 @@ species Caloramator transvaalensis root:Engineered:Food production:Fermented bev species Caloramator transvaalensis root:Environmental:Terrestrial:Soil 1.0 species Caloramator transvaalensis root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 species Caloramator transvaalensis root:Engineered:Solid waste:Solid animal waste 1.0 -order Diptera root:Host-associated:Plants 1.0 -order Diptera root:Engineered:Bioreactor 1.0 -order Diptera root:Engineered:Food production:Fermented beverages 1.0 -order Diptera root:Environmental:Aquatic:Marine:Sediment 1.0 -order Diptera root:Host-associated:Insecta 1.0 -order Diptera root:Environmental:Aquatic:Freshwater:Storm water 1.0 -order Diptera root:Environmental:Air 1.0 family Cecidomyiidae root:Host-associated:Plants 1.0 order Candidatus Obscuribacterales root:Host-associated:Plants 1.0 order Candidatus Obscuribacterales root:Host-associated:Human:Digestive system 1.0 @@ -63147,8 +64728,8 @@ species Rubrobacter vinacea root:Environmental:Terrestrial:Soil:Agricultural 5.0 species Rubrobacter vinacea root:Host-associated:Plants:Rhizosphere 4.0 species Rubrobacter vinacea root:Environmental:Terrestrial:Soil 17.0 species Rubrobacter vinacea root:Environmental:Terrestrial:Soil:Grasslands 2.0 -species Rubrobacter vinacea root:Host-associated:Plants:Root 1.0 species Rubrobacter vinacea root:Host-associated:Plants:Rhizosphere:Soil 3.0 +species Rubrobacter vinacea root:Host-associated:Plants:Root 1.0 species Rubrobacter vinacea root:Host-associated 1.0 species Rubrobacter vinacea root:Environmental:Terrestrial:Soil:Clay 1.0 species Rubrobacter vinacea root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -63312,7 +64893,7 @@ genus Pandoraea root:Engineered:Wastewater 2.0 genus Pandoraea root:Environmental:Terrestrial:Soil 3.0 genus Pandoraea root:Engineered:Bioreactor:Continuous culture 1.0 genus Chromobacterium root:Host-associated:Plants 1.0 -genus Chromobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +genus Chromobacterium root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 genus Chromobacterium root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 species Sutterella capsulatum root:Host-associated:Plants 1.0 species Sutterella capsulatum root:Engineered:Bioreactor:Continuous culture 1.0 @@ -63333,7 +64914,7 @@ genus Candidatus Nitrosocosmicus root:Environmental:Terrestrial:Soil:Clay 1.0 genus Singulisphaera root:Host-associated:Plants 1.0 genus Singulisphaera root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Singulisphaera root:Host-associated:Plants:Rhizosphere 3.0 -genus Singulisphaera root:Environmental:Terrestrial:Soil 6.0 +genus Singulisphaera root:Environmental:Terrestrial:Soil 7.0 genus Singulisphaera root:Engineered:Solid waste:Composting 1.0 genus Singulisphaera root:Environmental:Terrestrial:Deep subsurface 1.0 genus Singulisphaera root:Engineered:Wastewater:Water and sludge 1.0 @@ -63354,7 +64935,7 @@ species Candidatus Nitrosocosmicus exaquare root:Environmental:Terrestrial:Soil species Candidatus Nitrosocosmicus exaquare root:Engineered:Wastewater:Industrial wastewater 1.0 species Candidatus Nitrosocosmicus exaquare root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Jatrophihabitans endophyticus root:Host-associated:Plants 1.0 -species Jatrophihabitans endophyticus root:Environmental:Terrestrial:Soil 2.0 +species Jatrophihabitans endophyticus root:Environmental:Terrestrial:Soil 3.0 species Ohtaekwangia koreensis root:Host-associated:Plants 1.0 species Ohtaekwangia koreensis root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Ohtaekwangia koreensis root:Host-associated:Plants:Rhizosphere 2.0 @@ -63391,13 +64972,13 @@ species Pseudomonas savastanoi root:Host-associated:Plants 1.0 species Pseudomonas savastanoi root:Host-associated:Plants:Phylloplane 1.0 species Agrobacterium pacificus root:Host-associated:Plants 1.0 species Agrobacterium pacificus root:Environmental:Terrestrial:Soil 1.0 +species Agrobacterium pacificus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Agrobacterium pacificus root:Host-associated:Human:Digestive system 1.0 species Agrobacterium pacificus root:Engineered:Food production 1.0 -species Agrobacterium pacificus root:Host-associated:Plants:Rhizosphere:Soil 2.0 species Methylobacterium elegans root:Host-associated:Plants 1.0 species Methylobacterium elegans root:Environmental:Terrestrial:Soil 1.0 -species Methylobacterium elegans root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Methylobacterium elegans root:Engineered:Lab enrichment 1.0 +species Methylobacterium elegans root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Rhodoplanes elegans root:Host-associated:Plants 1.0 species Rhodoplanes elegans root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Sphingomonas nitrogenifigens root:Host-associated:Plants 1.0 @@ -63448,13 +65029,14 @@ genus Oenococcus root:Host-associated:Animal:Digestive system 1.0 genus Oenococcus root:Engineered:Modeled 1.0 genus Gluconobacter root:Host-associated:Plants 1.0 genus Gluconobacter root:Engineered:Food production:Fermented beverages 2.0 +genus Gluconobacter root:Engineered:Food production:Dairy products 1.0 genus Gluconobacter root:Host-associated:Plants:Phylloplane 2.0 genus Gluconobacter root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 genus Gluconobacter root:Environmental:Aquatic:Freshwater 1.0 genus Gluconobacter root:Engineered:Lab enrichment:Defined media 1.0 genus Gluconobacter root:Engineered:Food production 1.0 genus Gluconobacter root:Host-associated:Animal:Digestive system 1.0 -genus Gluconobacter root:Host-associated:Insecta:Digestive system 1.0 +genus Gluconobacter root:Host-associated:Insecta:Digestive system 2.0 genus Gluconobacter root:Host-associated:Arthropoda 1.0 species Acutodesmus obliquus root:Host-associated:Plants 1.0 species Acutodesmus obliquus root:Engineered:Wastewater 1.0 @@ -63466,6 +65048,7 @@ species Oenococcus oeni root:Host-associated:Animal:Digestive system 1.0 species Oenococcus oeni root:Engineered:Modeled 1.0 species Gluconobacter xylinus root:Host-associated:Plants 1.0 species Gluconobacter xylinus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Gluconobacter xylinus root:Host-associated:Insecta:Digestive system 1.0 species Thiovirga halophila root:Host-associated:Plants 1.0 species Thiovirga halophila root:Host-associated:Mammals 1.0 species Thiovirga halophila root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -63534,9 +65117,6 @@ species Methanoregula boonei root:Environmental:Aquatic:Estuary:Sediment 1.0 species Methanoregula boonei root:Engineered:Bioreactor 1.0 species Methanosphaerula palustris root:Environmental:Aquatic:Estuary:Sediment 1.0 species Methanosphaerula palustris root:Environmental:Terrestrial:Soil:Permafrost 1.0 -species Candidatus Methanoperedens nitroreducens root:Environmental:Aquatic:Estuary:Sediment 1.0 -species Candidatus Methanoperedens nitroreducens root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -species Candidatus Methanoperedens nitroreducens root:Engineered:Bioreactor:Continuous culture 1.0 genus Psychrobacillus root:Environmental:Aquatic:Estuary:Sediment 1.0 genus Psychrobacillus root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Sporosarcina sp. EUR3 2.2.2 root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -63549,6 +65129,7 @@ species Planococcus maritimus root:Host-associated:Mammals 1.0 species Planococcus maritimus root:Host-associated:Algae:Red algae 1.0 species Aricidea sp. THS-2006 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Thermoplasmatales archaeon SCGC AB-539-C06 root:Environmental:Aquatic:Estuary:Sediment 1.0 +species Thermoplasmatales archaeon SCGC AB-539-C06 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Thermoplasmatales archaeon SCGC AB-539-C06 root:Environmental:Aquatic:Marine:Sediment 6.0 order Ulotrichales root:Environmental:Aquatic:Estuary:Sediment 1.0 family Chlorocystidaceae root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -63561,9 +65142,6 @@ genus Desmochloris root:Environmental:Aquatic:Marine:Coastal 1.0 genus Desmochloris root:Host-associated:Algae:Red algae 3.0 genus Desmochloris root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Desmochloris root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 -genus Ephemera root:Environmental:Aquatic:Estuary:Sediment 1.0 -genus Ephemera root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 -genus Ephemera root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 species Desmochloris halophila root:Environmental:Aquatic:Estuary:Sediment 1.0 species Desmochloris halophila root:Environmental:Aquatic:Marine:Coastal 1.0 species Desmochloris halophila root:Host-associated:Algae:Red algae 3.0 @@ -63664,8 +65242,9 @@ species Algoriphagus sp. M8-2 root:Environmental:Aquatic:Estuary 1.0 species Algoriphagus sp. M8-2 root:Engineered:Built environment 1.0 species Thermus thermophilus root:Environmental:Aquatic:Estuary:Sediment 1.0 species Thermus thermophilus root:Engineered:Bioreactor 18.0 -species Thermus thermophilus root:Mixed 1.0 +species Thermus thermophilus root:Mixed 2.0 species Thermus thermophilus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 6.0 +species Thermus thermophilus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Thermus thermophilus root:Engineered:Solid waste:Composting 3.0 species Thermus thermophilus root:Environmental:Aquatic:Estuary 8.0 species Asterionella formosa root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -63676,7 +65255,7 @@ species Cloacibacterium normanense root:Engineered:Wastewater:Activated Sludge 1 species Cloacibacterium normanense root:Engineered:Wastewater 2.0 species Cloacibacterium normanense root:Environmental:Aquatic:Freshwater 2.0 species Cloacibacterium normanense root:Engineered:Wastewater:Industrial wastewater 1.0 -species Cloacibacterium normanense root:Engineered:Wastewater:Water and sludge 1.0 +species Cloacibacterium normanense root:Engineered:Wastewater:Water and sludge 2.0 species Micromonospora echinospora root:Environmental:Aquatic:Estuary:Sediment 1.0 species Polaribacter sp. Hel1 33 78 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Pseudanabaena sp. 'Roaring Creek' root:Environmental:Aquatic:Estuary:Sediment 1.0 @@ -63684,9 +65263,9 @@ species iron-reducing bacterium enrichment culture clone HN105 root:Environmenta species iron-reducing bacterium enrichment culture clone HN105 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species iron-reducing bacterium enrichment culture clone HN105 root:Environmental:Aquatic:Marine:Sediment 1.0 species iron-reducing bacterium enrichment culture clone HN105 root:Environmental:Aquatic:Sediment 2.0 +species iron-reducing bacterium enrichment culture clone HN105 root:Engineered:Lab enrichment 1.0 species iron-reducing bacterium enrichment culture clone HN105 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species iron-reducing bacterium enrichment culture clone HN105 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 2.0 -species iron-reducing bacterium enrichment culture clone HN105 root:Engineered:Lab enrichment 1.0 species Terrimonas sp. 16-45A root:Environmental:Aquatic:Estuary:Sediment 1.0 species Terrimonas sp. 16-45A root:Environmental:Aquatic:Freshwater:Lotic:Sediment 3.0 species Terrimonas sp. 16-45A root:Mixed 1.0 @@ -63742,7 +65321,7 @@ genus Chone root:Environmental:Aquatic:Estuary:Sediment 1.0 species Chone sp. AM E3574 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Meioglossus psammophilus root:Environmental:Aquatic:Estuary:Sediment 1.0 species Meioglossus psammophilus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -species Meioglossus psammophilus root:Environmental:Aquatic:Marine:Sediment 2.0 +species Meioglossus psammophilus root:Environmental:Aquatic:Marine:Sediment 3.0 species Meioglossus psammophilus root:Environmental:Aquatic:Marine:Cold seeps 1.0 species Protoperidinium conicum root:Environmental:Aquatic:Estuary:Sediment 1.0 species Protoperidinium conicum root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -63821,6 +65400,7 @@ genus Azoarcus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Azoarcus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Azoarcus root:Engineered:Bioreactor:Continuous culture 1.0 genus Azoarcus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Azoarcus root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Azoarcus root:Engineered:Bioremediation 1.0 species Clostridium sp. enrichment culture clone VanCtr93 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Clostridium sp. enrichment culture clone VanCtr93 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -63831,12 +65411,6 @@ species Chlamydiales bacterium CRIB33 root:Environmental:Terrestrial:Soil 1.0 species Rhodocyclaceae bacterium enrichment culture clone ANA-RAS-19 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Bdellovibrionales bacterium RBG 16 40 8 root:Environmental:Aquatic:Estuary:Sediment 1.0 species Bdellovibrionales bacterium RBG 16 40 8 root:Environmental:Aquatic:Sediment 1.0 -genus Vagococcus root:Engineered:Food production:Silage fermentation 1.0 -genus Vagococcus root:Engineered:Food production:Dairy products 3.0 -genus Vagococcus root:Environmental:Terrestrial:Soil 1.0 -genus Vagococcus root:Engineered:Food production 1.0 -genus Vagococcus root:Engineered:Wastewater:Water and sludge 1.0 -genus Vagococcus root:Environmental:Terrestrial:Agricultural field 1.0 species Lactobacillus plutonius root:Engineered:Food production:Silage fermentation 1.0 species Lactobacillus plutonius root:Engineered:Food production:Fermented beverages 1.0 species Lactobacillus plutonius root:Engineered:Food production:Dairy products 1.0 @@ -63846,12 +65420,15 @@ species Gemmata venationis root:Engineered:Food production:Silage fermentation 1 species Pediococcus zeae root:Engineered:Food production:Silage fermentation 1.0 species Pediococcus zeae root:Engineered:Food production:Fermented beverages 1.0 species Pediococcus zeae root:Environmental:Terrestrial:Soil 1.0 +species Pediococcus zeae root:Host-associated:Insecta:Digestive system 1.0 species Pediococcus zeae root:Engineered:Food production:Fermented vegetables 1.0 species Pediococcus zeae root:Environmental:Terrestrial:Agricultural field 1.0 species Lactobacillus brevis root:Engineered:Food production:Silage fermentation 1.0 species Lactobacillus brevis root:Engineered:Food production:Fermented beverages 1.0 +species Lactobacillus brevis root:Engineered:Food production:Dairy products 1.0 species Lactobacillus brevis root:Engineered:Food production 1.0 species Lactobacillus brevis root:Engineered:Food production:Fermented seafood 1.0 +species Lactobacillus brevis root:Host-associated:Insecta:Digestive system 1.0 species Lactobacillus brevis root:Environmental:Terrestrial:Agricultural field 1.0 species Vagococcus plutonius root:Engineered:Food production:Silage fermentation 1.0 species [Candida] glabrata root:Host-associated:Human:Digestive system:Large intestine 1.0 @@ -63875,6 +65452,9 @@ species [Eubacterium] rectale root:Host-associated:Human:Digestive system:Large species [Ruminococcus] torques root:Host-associated:Human:Digestive system:Large intestine 1.0 species [Ruminococcus] torques root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Halorhodospira hippei root:Host-associated:Human:Digestive system:Large intestine 1.0 +genus Holdemania root:Host-associated:Human:Digestive system:Large intestine 1.0 +genus Holdemania root:Host-associated:Human:Circulatory system:Blood 1.0 +species Clostridium sp. KLE 1755 root:Host-associated:Human:Digestive system:Large intestine 1.0 species Actinobacteria bacterium RBG 16 55 12 root:Host-associated:Human:Digestive system:Large intestine 1.0 species Actinobacteria bacterium RBG 16 55 12 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Actinobacteria bacterium RBG 16 55 12 root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -63898,6 +65478,7 @@ species Syntrophus fasciculatus root:Environmental:Terrestrial:Soil:Agricultural species Syntrophus fasciculatus root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Syntrophus fasciculatus root:Environmental:Terrestrial:Soil:Wetlands 1.0 genus Microvirga root:Environmental:Terrestrial:Soil:Agricultural 1.0 +genus Microvirga root:Host-associated:Plants:Rhizosphere 1.0 genus Microvirga root:Environmental:Terrestrial:Soil 2.0 genus Microvirga root:Host-associated:Porifera 1.0 genus Microvirga root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -64017,7 +65598,7 @@ species Luedemannella sp. 119-1-07 root:Environmental:Terrestrial:Soil 2.0 species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil:Agricultural 5.0 species Gemmatirosa kalamazoonesis root:Mixed 1.0 species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil:Contaminated 1.0 -species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil 3.0 +species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil 4.0 species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil:Desert 1.0 species Gemmatirosa kalamazoonesis root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 @@ -64040,6 +65621,7 @@ species Solirubrobacter sp. URHD0082 root:Engineered:Wastewater:Activated Sludge species Solirubrobacter sp. URHD0082 root:Environmental:Terrestrial:Soil:Permafrost 1.0 species Solirubrobacter sp. URHD0082 root:Host-associated:Plants:Rhizosphere 4.0 species Solirubrobacter sp. URHD0082 root:Environmental:Terrestrial:Soil 4.0 +species Solirubrobacter sp. URHD0082 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Solirubrobacter sp. URHD0082 root:Environmental:Terrestrial:Soil:Desert 1.0 genus GOUTA19 root:Environmental:Terrestrial:Soil:Agricultural 3.0 genus GOUTA19 root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -64056,8 +65638,8 @@ genus Sphingosinicella root:Environmental:Aquatic:Marine:Intertidal zone:Estuary genus Sphingosinicella root:Host-associated:Plants:Rhizosphere 2.0 genus Sphingosinicella root:Environmental:Terrestrial:Soil 7.0 genus Sphingosinicella root:Environmental:Terrestrial:Soil:Wetlands 1.0 -genus Sphingosinicella root:Engineered:Solid waste:Composting 1.0 genus Sphingosinicella root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Sphingosinicella root:Engineered:Solid waste:Composting 1.0 genus Sphingosinicella root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 genus Sphingosinicella root:Engineered:Wastewater:Industrial wastewater 2.0 genus Sphingosinicella root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -64084,8 +65666,8 @@ species Sphingosinicella microcystinivorans root:Environmental:Terrestrial:Soil: species Sphingosinicella microcystinivorans root:Host-associated:Plants:Rhizosphere 2.0 species Sphingosinicella microcystinivorans root:Environmental:Terrestrial:Soil 7.0 species Sphingosinicella microcystinivorans root:Environmental:Terrestrial:Soil:Wetlands 1.0 -species Sphingosinicella microcystinivorans root:Engineered:Solid waste:Composting 1.0 species Sphingosinicella microcystinivorans root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sphingosinicella microcystinivorans root:Engineered:Solid waste:Composting 1.0 species Sphingosinicella microcystinivorans root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 species Sphingosinicella microcystinivorans root:Engineered:Wastewater:Industrial wastewater 2.0 species Sphingosinicella microcystinivorans root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -64093,7 +65675,7 @@ species delta proteobacterium WX81 root:Environmental:Terrestrial:Soil:Agricultu species delta proteobacterium WX81 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 species delta proteobacterium WX81 root:Mixed 1.0 species delta proteobacterium WX81 root:Environmental:Terrestrial:Soil:Contaminated 1.0 -species delta proteobacterium WX81 root:Host-associated:Plants:Rhizosphere 1.0 +species delta proteobacterium WX81 root:Host-associated:Plants:Rhizosphere 2.0 species delta proteobacterium WX81 root:Environmental:Terrestrial:Soil 4.0 species delta proteobacterium WX81 root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 species delta proteobacterium WX81 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 @@ -64171,8 +65753,8 @@ species Zoogloea toluolica root:Environmental:Terrestrial:Soil 4.0 species Zoogloea toluolica root:Environmental:Aquatic 1.0 species Zoogloea toluolica root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Zoogloea toluolica root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -species Zoogloea toluolica root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Zoogloea toluolica root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Zoogloea toluolica root:Engineered:Wastewater:Industrial wastewater:Petrochemical 1.0 species Vibrio thermotolerans root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Rubrobacter alba root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Planctomyces gasigenes root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -64199,8 +65781,8 @@ species Sporomusa prausnitzii root:Engineered:Lab enrichment 1.0 family [Entotheonellaceae] root:Environmental:Terrestrial:Soil:Agricultural 2.0 family [Entotheonellaceae] root:Environmental:Terrestrial:Soil 1.0 family [Entotheonellaceae] root:Host-associated:Porifera 1.0 -family [Entotheonellaceae] root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family [Entotheonellaceae] root:Host-associated:Plants:Rhizosphere:Soil 2.0 +family [Entotheonellaceae] root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 family [Entotheonellaceae] root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 genus Herbidospora root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Rhodoplanes carboxydohydrogena root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -64213,21 +65795,6 @@ species Segetibacter ximonensis root:Environmental:Terrestrial:Soil 1.0 species Herbidospora cretacea root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Sphingomonas capsulatum root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Sphingomonas capsulatum root:Engineered:Food production 1.0 -family Dietziaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 -family Dietziaceae root:Environmental:Terrestrial:Soil 2.0 -family Dietziaceae root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -family Dietziaceae root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 -family Dietziaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Dietzia root:Environmental:Terrestrial:Soil:Agricultural 1.0 -genus Dietzia root:Engineered:Bioreactor 1.0 -genus Dietzia root:Engineered:Wastewater:Activated Sludge 2.0 -genus Dietzia root:Mixed 1.0 -genus Dietzia root:Environmental:Terrestrial:Soil 2.0 -genus Dietzia root:Environmental:Aquatic:Marine:Cold seeps 1.0 -genus Dietzia root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -genus Dietzia root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 2.0 -genus Dietzia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Dietzia root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Cellulosilyticum lentocellum root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Cellulosilyticum lentocellum root:Engineered:Bioreactor 1.0 species Leptolinea tardivitalis root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -64261,8 +65828,8 @@ order YC-E6 root:Environmental:Terrestrial:Soil 3.0 order YC-E6 root:Environmental:Terrestrial:Soil:Wetlands 1.0 family BA008 root:Environmental:Terrestrial:Soil:Agricultural 1.0 family BA008 root:Engineered:Bioreactor 2.0 -family BA008 root:Engineered:Lab enrichment:Defined media 1.0 family BA008 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family BA008 root:Engineered:Lab enrichment:Defined media 1.0 family BA008 root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 family BA008 root:Engineered:Bioreactor:Continuous culture 2.0 family BA008 root:Engineered:Wastewater:Water and sludge 2.0 @@ -64270,8 +65837,8 @@ family BA008 root:Environmental:Aquatic:Marine:Intertidal zone 1.0 family BA008 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 species Methanosarcina thermautotrophicus root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Methanosarcina thermautotrophicus root:Environmental:Terrestrial:Soil 2.0 -species Methanosarcina thermautotrophicus root:Engineered:Solid waste:Composting 1.0 species Methanosarcina thermautotrophicus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Methanosarcina thermautotrophicus root:Engineered:Solid waste:Composting 1.0 species Methanosarcina thermautotrophicus root:Environmental:Terrestrial:Soil:Sand 1.0 species Methanosarcina thermautotrophicus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Methanocella thermautotrophicus root:Environmental:Terrestrial:Soil:Agricultural 2.0 @@ -64378,7 +65945,7 @@ species bacterium root:Host-associated:Insecta 1.0 species bacterium root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species bacterium root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 species Aridibacter famidurans root:Environmental:Terrestrial:Soil:Agricultural 1.0 -species Aridibacter famidurans root:Host-associated:Plants:Rhizosphere 1.0 +species Aridibacter famidurans root:Host-associated:Plants:Rhizosphere 3.0 species Aridibacter famidurans root:Environmental:Terrestrial:Soil 1.0 family Actinospicaceae root:Environmental:Terrestrial:Soil:Agricultural 1.0 family Actinospicaceae root:Environmental:Terrestrial:Soil 1.0 @@ -64431,8 +65998,8 @@ species Geobacter vulgaris root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Geobacter vulgaris root:Engineered:Bioreactor 1.0 species Geobacter vulgaris root:Environmental:Terrestrial:Soil 1.0 species Geobacter vulgaris root:Environmental:Aquatic:Marine:Sediment 1.0 -species Geobacter vulgaris root:Engineered:Bioreactor:Continuous culture 3.0 species Geobacter vulgaris root:Engineered:Lab enrichment 1.0 +species Geobacter vulgaris root:Engineered:Bioreactor:Continuous culture 3.0 species Geobacter vulgaris root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 species Azospirillum marcusii root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Pelobacter michiganensis root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -64452,6 +66019,7 @@ species delta proteobacterium WX152 root:Environmental:Terrestrial:Soil 6.0 species delta proteobacterium WX152 root:Environmental:Aquatic:Marine:Sediment 3.0 species delta proteobacterium WX152 root:Environmental:Aquatic:Sediment 1.0 species delta proteobacterium WX152 root:Environmental:Aquatic:Marine:Coastal 1.0 +species delta proteobacterium WX152 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species delta proteobacterium WX152 root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 species bacterium Ellin6074 root:Environmental:Terrestrial:Soil:Agricultural 1.0 species bacterium Ellin6074 root:Mixed 1.0 @@ -64487,9 +66055,9 @@ family PRR-10 root:Environmental:Terrestrial:Soil 1.0 family PRR-10 root:Host-associated:Plants:Rhizosphere:Soil 1.0 genus Uliginosibacterium root:Environmental:Terrestrial:Soil:Agricultural 1.0 genus Uliginosibacterium root:Environmental:Terrestrial:Soil 2.0 +genus Uliginosibacterium root:Engineered:Lab enrichment 1.0 genus Uliginosibacterium root:Host-associated:Plants:Root 1.0 genus Uliginosibacterium root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Uliginosibacterium root:Engineered:Lab enrichment 1.0 species Gemmatimonas hungatei root:Environmental:Terrestrial:Soil:Agricultural 1.0 species Gemmatimonas hungatei root:Environmental:Terrestrial:Soil 1.0 species Desulfomonile fumosum root:Environmental:Terrestrial:Soil:Agricultural 1.0 @@ -64552,17 +66120,21 @@ order Immundisolibacterales root:Environmental:Terrestrial:Soil 1.0 order Immundisolibacterales root:Environmental:Aquatic:Sediment 1.0 order Immundisolibacterales root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 order Immundisolibacterales root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +order Immundisolibacterales root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 family Immundisolibacteraceae root:Engineered:Bioreactor 1.0 family Immundisolibacteraceae root:Environmental:Terrestrial:Soil 1.0 family Immundisolibacteraceae root:Environmental:Aquatic:Sediment 1.0 family Immundisolibacteraceae root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 family Immundisolibacteraceae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +family Immundisolibacteraceae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Immundisolibacter root:Engineered:Bioreactor 1.0 genus Immundisolibacter root:Environmental:Terrestrial:Soil 2.0 genus Immundisolibacter root:Environmental:Aquatic:Sediment 1.0 genus Immundisolibacter root:Environmental:Terrestrial:Soil:Sand 2.0 genus Immundisolibacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Immundisolibacter root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 genus Parvibaculum root:Engineered:Bioreactor 1.0 +genus Parvibaculum root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 genus Parvibaculum root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Parvibaculum root:Engineered:Solid waste:Composting 2.0 genus Parvibaculum root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -64572,7 +66144,7 @@ species Immundisolibacter cernigliae root:Environmental:Terrestrial:Soil 2.0 species Immundisolibacter cernigliae root:Environmental:Aquatic:Sediment 1.0 species Immundisolibacter cernigliae root:Environmental:Terrestrial:Soil:Sand 1.0 species Immundisolibacter cernigliae root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -species Immundisolibacter cernigliae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 +species Immundisolibacter cernigliae root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 2.0 species Candidatus Nitrospira nitrosa root:Engineered:Bioreactor 1.0 species Candidatus Nitrospira nitrosa root:Engineered:Wastewater:Activated Sludge 1.0 species Candidatus Nitrospira nitrosa root:Environmental:Terrestrial:Soil 1.0 @@ -64593,6 +66165,7 @@ species Chloroflexi bacterium OLB14 root:Engineered:Wastewater:Activated Sludge species Chloroflexi bacterium OLB14 root:Engineered:Wastewater 2.0 species Chloroflexi bacterium OLB14 root:Environmental:Aquatic:Marine:Sediment 1.0 species Chloroflexi bacterium OLB14 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +species Chloroflexi bacterium OLB14 root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Hyphomicrobium sp. CS1GBMeth3 root:Engineered:Bioreactor 1.0 species Hyphomicrobium sp. CS1GBMeth3 root:Engineered:Wastewater:Activated Sludge 1.0 species Hyphomicrobium sp. CS1GBMeth3 root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -64639,9 +66212,12 @@ species Methanobacterium formicicum root:Engineered:Bioreactor 2.0 species Methanobacterium formicicum root:Engineered:Wastewater:Activated Sludge 2.0 order Chitinispirillales root:Engineered:Bioreactor 4.0 order Chitinispirillales root:Engineered:Wastewater:Activated Sludge 1.0 +order Chitinispirillales root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Flexilinea root:Engineered:Bioreactor 1.0 genus Flexilinea root:Engineered:Wastewater:Activated Sludge 4.0 +genus Flexilinea root:Host-associated:Mammals 1.0 genus Flexilinea root:Engineered:Wastewater 1.0 +genus Flexilinea root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Flexilinea root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Flexilinea root:Engineered:Wastewater:Industrial wastewater 1.0 species Betaproteobacteria bacterium ADurb.Bin341 root:Engineered:Bioreactor 5.0 @@ -64690,6 +66266,7 @@ genus Candidatus Microthrix root:Mixed 1.0 genus Candidatus Microthrix root:Engineered:Wastewater 3.0 genus Candidatus Microthrix root:Host-associated:Porifera 1.0 genus Candidatus Microthrix root:Engineered:Wastewater:Water and sludge 1.0 +genus Candidatus Microthrix root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Nannocystis root:Engineered:Bioreactor 2.0 genus Nannocystis root:Engineered:Wastewater:Activated Sludge 2.0 genus Nannocystis root:Engineered:Wastewater 1.0 @@ -64698,9 +66275,11 @@ genus Nannocystis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 genus Nannocystis root:Engineered:Wastewater:Water and sludge 1.0 species Candidatus Microthrix parvicella root:Engineered:Bioreactor 3.0 species Candidatus Microthrix parvicella root:Engineered:Wastewater:Activated Sludge 7.0 +species Candidatus Microthrix parvicella root:Mixed 1.0 species Candidatus Microthrix parvicella root:Engineered:Wastewater 3.0 species Candidatus Microthrix parvicella root:Host-associated:Porifera 2.0 species Candidatus Microthrix parvicella root:Engineered:Wastewater:Water and sludge 2.0 +species Candidatus Microthrix parvicella root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Dechloromonas aromatica root:Engineered:Bioreactor 2.0 species Dechloromonas aromatica root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Dechloromonas aromatica root:Engineered:Wastewater:Activated Sludge 1.0 @@ -64719,19 +66298,24 @@ species Geothrix fermentans root:Environmental:Aquatic:Sediment 1.0 species Geothrix fermentans root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Geothrix fermentans root:Engineered:Wastewater:Water and sludge 1.0 species Geothrix fermentans root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -species Geothrix fermentans root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Geothrix fermentans root:Environmental:Aquatic:Freshwater:Pond:Sediment 2.0 +species Geothrix fermentans root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 species Pseudomonas sp. RL root:Engineered:Bioreactor 2.0 +species Pseudomonas sp. RL root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas sp. RL root:Engineered:Wastewater:Water and sludge 1.0 species Candidatus Promineofilum breve root:Engineered:Bioreactor 2.0 species Candidatus Promineofilum breve root:Engineered:Wastewater:Activated Sludge 10.0 species Candidatus Promineofilum breve root:Engineered:Wastewater 1.0 species Candidatus Promineofilum breve root:Environmental:Aquatic:Marine:Sediment 1.0 species Candidatus Promineofilum breve root:Engineered:Wastewater:Industrial wastewater 3.0 +species Candidatus Promineofilum breve root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Dokdonella immobilis root:Engineered:Bioreactor 1.0 species Dokdonella immobilis root:Engineered:Wastewater:Activated Sludge 10.0 species Dokdonella immobilis root:Engineered:Wastewater:Industrial wastewater 2.0 +species Dokdonella immobilis root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Prosthecobacter vanneervenii root:Engineered:Bioreactor 1.0 species Prosthecobacter vanneervenii root:Engineered:Wastewater:Activated Sludge 4.0 +species Prosthecobacter vanneervenii root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Chlorobi bacterium OLB5 root:Engineered:Bioreactor 4.0 species Chlorobi bacterium OLB5 root:Engineered:Wastewater:Activated Sludge 3.0 species Chlorobi bacterium OLB5 root:Engineered:Bioreactor:Continuous culture 1.0 @@ -64750,10 +66334,10 @@ genus Herbinix root:Engineered:Biogas plant:Wet fermentation 4.0 genus Herbinix root:Engineered:Biogas plant 2.0 genus Chelatococcus root:Engineered:Bioreactor 7.0 genus Chelatococcus root:Environmental:Terrestrial:Soil 2.0 +genus Chelatococcus root:Engineered:Lab enrichment 1.0 genus Chelatococcus root:Engineered:Solid waste:Composting 3.0 genus Chelatococcus root:Engineered:Bioreactor:Continuous culture 1.0 genus Chelatococcus root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -genus Chelatococcus root:Engineered:Lab enrichment 1.0 species Thermobifida fusca root:Engineered:Bioreactor 2.0 species Thermobifida fusca root:Engineered:Solid waste:Composting 1.0 species Thermomonospora curvata root:Engineered:Bioreactor 7.0 @@ -64768,7 +66352,7 @@ genus Bergeyella root:Host-associated:Human:Respiratory system:Nasopharyngeal 1. genus Bergeyella root:Host-associated:Arthropoda:Respiratory system:Gills 1.0 species Acetoanaerobium sticklandii root:Engineered:Bioreactor 2.0 species Acetoanaerobium sticklandii root:Engineered:Wastewater 1.0 -species Acetoanaerobium sticklandii root:Engineered:Wastewater:Water and sludge 1.0 +species Acetoanaerobium sticklandii root:Engineered:Wastewater:Water and sludge 2.0 species Corynebacterium marinum root:Engineered:Bioreactor 2.0 species Halomonas desiderata root:Engineered:Bioreactor 1.0 species Halomonas desiderata root:Host-associated:Mammals 1.0 @@ -64777,6 +66361,7 @@ species Bacteroidales bacterium Bact 08 root:Engineered:Bioreactor 2.0 species Desulfovibrio alkalitolerans root:Engineered:Bioreactor 1.0 species Desulfovibrio alkalitolerans root:Environmental:Aquatic:Sediment 1.0 species Idiomarina sp. A28L root:Engineered:Bioreactor 1.0 +species Idiomarina sp. A28L root:Engineered:Bioreactor:Continuous culture 1.0 family Chitinispirillaceae root:Engineered:Bioreactor 2.0 genus Gordonia root:Engineered:Bioreactor 3.0 genus Gordonia root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -64832,6 +66417,7 @@ species Clostridium aminophilum root:Host-associated:Mammals:Digestive system:St species candidate division CPR1 bacterium ADurb.Bin160 root:Engineered:Bioreactor 2.0 species candidate division CPR1 bacterium ADurb.Bin160 root:Engineered:Wastewater:Activated Sludge 10.0 species candidate division CPR1 bacterium ADurb.Bin160 root:Engineered:Wastewater:Water and sludge 1.0 +species candidate division CPR1 bacterium ADurb.Bin160 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species candidate division CPR1 bacterium ADurb.Bin160 root:Environmental:Terrestrial:Soil:Loam 1.0 species Lampropedia hyalina root:Engineered:Bioreactor 1.0 species Clostridiales bacterium enrichment culture clone LDC-1 root:Engineered:Bioreactor 1.0 @@ -64841,7 +66427,7 @@ species Methanobrevibacter wolinii root:Engineered:Bioreactor 1.0 species Methanobrevibacter wolinii root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species candidate division WS2 bacterium ADurb.Bin280 root:Engineered:Bioreactor 1.0 genus Candidatus Accumulibacter root:Engineered:Bioreactor 3.0 -genus Candidatus Accumulibacter root:Engineered:Wastewater:Activated Sludge 4.0 +genus Candidatus Accumulibacter root:Engineered:Wastewater:Activated Sludge 5.0 genus Candidatus Accumulibacter root:Engineered:Wastewater:Water and sludge 1.0 genus Thermomonas root:Engineered:Bioreactor 2.0 genus Thermomonas root:Engineered:Wastewater:Activated Sludge 4.0 @@ -64861,6 +66447,7 @@ order Petrotogales root:Environmental:Aquatic:Marine:Sediment 1.0 order Petrotogales root:Engineered:Biogas plant:Wet fermentation 1.0 order Petrotogales root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 order Petrotogales root:Engineered:Wastewater:Water and sludge 1.0 +order Petrotogales root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 order Petrotogales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 genus Tepidanaerobacter root:Engineered:Bioreactor 15.0 genus Tepidanaerobacter root:Engineered:Wastewater:Activated Sludge 3.0 @@ -64872,6 +66459,7 @@ genus Acetomicrobium root:Engineered:Wastewater:Activated Sludge 9.0 genus Acetomicrobium root:Environmental:Aquatic:Marine:Sediment 1.0 genus Acetomicrobium root:Engineered:Biogas plant:Wet fermentation 4.0 genus Acetomicrobium root:Engineered:Bioreactor:Continuous culture 1.0 +genus Acetomicrobium root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Acetomicrobium root:Engineered:Biogas plant 2.0 species [Clostridium] clariflavum root:Engineered:Bioreactor 14.0 species [Clostridium] clariflavum root:Engineered:Wastewater:Activated Sludge 1.0 @@ -64903,6 +66491,7 @@ species Defluviitoga tunisiensis root:Engineered:Solid waste:Composting 1.0 species Defluviitoga tunisiensis root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 species Defluviitoga tunisiensis root:Engineered:Bioreactor:Continuous culture 1.0 species Defluviitoga tunisiensis root:Engineered:Wastewater:Water and sludge 1.0 +species Defluviitoga tunisiensis root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Defluviitoga tunisiensis root:Engineered:Biogas plant 2.0 phylum Colponemidia root:Engineered:Bioreactor 1.0 phylum Colponemidia root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -64963,6 +66552,7 @@ species Cupriavidus pinatubonensis root:Engineered:Bioreactor 1.0 species Starkeya novella root:Engineered:Bioreactor 1.0 species Labilithrix luteola root:Engineered:Bioreactor 2.0 species Labilithrix luteola root:Host-associated:Plants:Rhizosphere 1.0 +species Labilithrix luteola root:Environmental:Terrestrial:Soil 1.0 species Labilithrix luteola root:Engineered:Solid waste:Composting 1.0 species Labilithrix luteola root:Environmental:Terrestrial:Soil:Loam:Contaminated 1.0 species Labilithrix luteola root:Host-associated:Fungi 1.0 @@ -64970,6 +66560,7 @@ genus Trebouxia root:Engineered:Bioreactor 1.0 genus Trebouxia root:Environmental:Aquatic:Marine:Coastal 1.0 genus Trebouxia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 genus Trebouxia root:Environmental:Air 1.0 +genus Trebouxia root:Host-associated:Fungi 1.0 species Trebouxia sp. TR9 root:Engineered:Bioreactor 1.0 species Trebouxia sp. TR9 root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Trebouxia sp. TR9 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -64997,6 +66588,7 @@ genus Candidatus Cloacimonas root:Mixed 1.0 genus Candidatus Cloacimonas root:Engineered:Biogas plant:Wet fermentation 1.0 genus Candidatus Cloacimonas root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 genus Candidatus Cloacimonas root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 +genus Candidatus Cloacimonas root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Candidatus Cloacimonas root:Engineered:Biogas plant 1.0 genus Lentimicrobium root:Engineered:Bioreactor 5.0 genus Lentimicrobium root:Engineered:Wastewater:Activated Sludge 5.0 @@ -65022,6 +66614,7 @@ species Syntrophaceticus schinkii root:Environmental:Aquatic:Freshwater:Lotic:Se species Syntrophaceticus schinkii root:Mixed 1.0 species Syntrophaceticus schinkii root:Engineered:Food production:Fermented beverages 1.0 species Syntrophaceticus schinkii root:Engineered:Biogas plant:Wet fermentation 1.0 +species Syntrophaceticus schinkii root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Aminivibrio pyruvatiphilus root:Engineered:Bioreactor 2.0 species Aminivibrio pyruvatiphilus root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Aminivibrio pyruvatiphilus root:Engineered:Wastewater 1.0 @@ -65034,9 +66627,12 @@ species Aminivibrio pyruvatiphilus root:Engineered:Wastewater:Industrial wastewa species Aminivibrio pyruvatiphilus root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Aminivibrio pyruvatiphilus root:Engineered:Wastewater:Water and sludge 1.0 phylum Tardigrada root:Engineered:Bioreactor 2.0 +phylum Tardigrada root:Host-associated:Human:Digestive system:Intestine 1.0 phylum Tardigrada root:Engineered:Wastewater 3.0 phylum Tardigrada root:Environmental:Aquatic:Marine:Sediment 1.0 +phylum Tardigrada root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 class Eutardigrada root:Engineered:Bioreactor 1.0 +class Eutardigrada root:Host-associated:Human:Digestive system:Intestine 1.0 class Eutardigrada root:Engineered:Wastewater 3.0 order Parachela root:Engineered:Bioreactor 1.0 family Hypsibiidae root:Engineered:Bioreactor 1.0 @@ -65108,7 +66704,9 @@ species Leptonema illini root:Environmental:Terrestrial:Soil 1.0 species Leptonema illini root:Environmental:Aquatic:Marine:Sediment 1.0 species Leptonema illini root:Host-associated:Microbial 1.0 class Chitinispirillia root:Engineered:Bioreactor 1.0 +class Chitinispirillia root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Chitinispirillum root:Engineered:Bioreactor 1.0 +genus Chitinispirillum root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 genus Chitinispirillum root:Engineered:Biogas plant 1.0 species Chitinispirillum alkaliphilum root:Engineered:Bioreactor 1.0 family Thermoanaerobacterales Family IV. Incertae Sedis root:Engineered:Bioreactor 2.0 @@ -65119,6 +66717,7 @@ genus Defluviitoga root:Environmental:Terrestrial:Soil 1.0 genus Defluviitoga root:Engineered:Biogas plant:Wet fermentation 2.0 genus Defluviitoga root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 genus Defluviitoga root:Engineered:Wastewater:Water and sludge 1.0 +genus Defluviitoga root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Coprothermobacter proteolyticus root:Engineered:Bioreactor 9.0 species Coprothermobacter proteolyticus root:Engineered:Wastewater:Activated Sludge 6.0 species Coprothermobacter proteolyticus root:Engineered:Biogas plant:Wet fermentation 2.0 @@ -65144,11 +66743,9 @@ species vadinCA02 maltophilia root:Engineered:Bioreactor 1.0 species 02d06 vaginalis root:Engineered:Bioreactor 1.0 species 02d06 vaginalis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Sphaerochaeta maltophilia root:Engineered:Bioreactor 1.0 -genus Oceanibaculum root:Engineered:Bioreactor 1.0 species Oceanicaulis sp. HL-87 root:Engineered:Bioreactor 1.0 species Oceanicaulis sp. HL-87 root:Environmental:Aquatic:Marine:Brackish 2.0 species Oceanicaulis sp. HL-87 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 -species Oceanibaculum indicum root:Engineered:Bioreactor 1.0 species Hyphomicrobium nitrativorans root:Engineered:Bioreactor 1.0 species Hyphomicrobium nitrativorans root:Engineered:Wastewater:Activated Sludge 2.0 species Alkaliflexus imshenetskii root:Engineered:Bioreactor 1.0 @@ -65289,8 +66886,8 @@ genus Patulibacter root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus Patulibacter root:Environmental:Terrestrial:Soil 1.0 genus Patulibacter root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Patulibacter root:Environmental:Terrestrial:Soil:Grasslands 1.0 -genus Patulibacter root:Environmental:Terrestrial:Soil:Desert 2.0 genus Patulibacter root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Patulibacter root:Environmental:Terrestrial:Soil:Desert 2.0 genus Patulibacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Patulibacter root:Engineered:Wastewater:Water and sludge 1.0 genus Patulibacter root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 @@ -65316,13 +66913,13 @@ species Parcubacteria group bacterium ADurb.Bin159 root:Engineered:Bioreactor 1. species Parcubacteria group bacterium ADurb.Bin159 root:Engineered:Wastewater:Activated Sludge 5.0 species Arcobacter sp. L root:Engineered:Bioreactor 1.0 species Arcobacter sp. L root:Engineered:Wastewater 2.0 -species Arcobacter sp. L root:Engineered:Wastewater:Water and sludge 1.0 +species Arcobacter sp. L root:Engineered:Wastewater:Water and sludge 2.0 species Arcobacter sp. L root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 species Heterosiphonia pulchra root:Engineered:Bioreactor 1.0 species Epispathidium amphoriforme root:Engineered:Bioreactor 1.0 +species Epispathidium amphoriforme root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Epispathidium amphoriforme root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Epispathidium amphoriforme root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -species Epispathidium amphoriforme root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Epispathidium amphoriforme root:Environmental:Terrestrial:Soil:Clay 1.0 species Epispathidium amphoriforme root:Host-associated:Birds:Digestive system 1.0 species Epispathidium amphoriforme root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -65373,6 +66970,7 @@ species Aminobacterium colombiense root:Engineered:Bioreactor 3.0 family Labilitrichaceae root:Engineered:Bioreactor 2.0 genus Stackebrandtia root:Engineered:Bioreactor 1.0 genus Stackebrandtia root:Environmental:Terrestrial:Soil:Grasslands 1.0 +genus Stackebrandtia root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Scytonemataceae root:Engineered:Bioreactor 1.0 family Scytonemataceae root:Environmental:Terrestrial:Soil:Desert 1.0 genus Scytonema root:Engineered:Bioreactor 1.0 @@ -65381,6 +66979,7 @@ species Achromobacter xylosoxidans root:Host-associated:Human:Skin 1.0 species Achromobacter xylosoxidans root:Environmental:Terrestrial:Soil 1.0 species Achromobacter xylosoxidans root:Environmental:Aquatic 1.0 species Achromobacter xylosoxidans root:Host-associated:Porifera 1.0 +species Achromobacter xylosoxidans root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Achromobacter xylosoxidans root:Engineered:Solid waste:Composting 1.0 species Achromobacter xylosoxidans root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Pantoea sp. 3.5.1 root:Engineered:Bioreactor 1.0 @@ -65405,11 +67004,13 @@ species Thermotoga alcaligenes root:Engineered:Bioreactor 1.0 species Methanomethylovorans thermautotrophicus root:Engineered:Bioreactor 1.0 family Pichiaceae root:Engineered:Bioreactor 1.0 family Pichiaceae root:Engineered:Food production:Fermented beverages 2.0 +family Pichiaceae root:Engineered:Food production:Dairy products 1.0 family Pichiaceae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Pichiaceae root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 family Pichiaceae root:Engineered:Food production:Fermented vegetables 1.0 genus Pichia root:Engineered:Bioreactor 1.0 genus Pichia root:Engineered:Food production:Fermented beverages 1.0 +genus Pichia root:Engineered:Food production:Dairy products 1.0 genus Pichia root:Host-associated:Mammals:Digestive system:Stomach 1.0 genus Pichia root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 genus Pichia root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -65446,7 +67047,7 @@ species Methanobrevibacter arboriphilus root:Host-associated:Mammals:Digestive s species HA73 axonopodis root:Engineered:Bioreactor 1.0 species HA73 axonopodis root:Engineered:Bioreactor:Continuous culture 1.0 species Desulfovibrio vulgaris root:Engineered:Bioreactor 1.0 -species Desulfovibrio vulgaris root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Desulfovibrio vulgaris root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 species Desulfovibrio vulgaris root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 species Methanobacterium SCA1145 root:Engineered:Bioreactor 1.0 species vadinHB04 mobilis root:Engineered:Bioreactor 1.0 @@ -65545,6 +67146,7 @@ genus Gallicola root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Alkaliphilus root:Engineered:Bioreactor 1.0 genus Alkaliphilus root:Environmental:Aquatic:Freshwater:Lotic 1.0 genus Alkaliphilus root:Environmental:Aquatic:Sediment 1.0 +genus Alkaliphilus root:Engineered:Food production:Fermented seafood 1.0 genus Alkaliphilus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Selenihalanaerobacter root:Engineered:Bioreactor 1.0 genus Selenihalanaerobacter root:Engineered:Biogas plant 1.0 @@ -65611,8 +67213,8 @@ species Terrimonas ferruginea root:Engineered:Bioreactor 1.0 species Terrimonas ferruginea root:Engineered:Wastewater:Activated Sludge 6.0 species Terrimonas ferruginea root:Engineered:Wastewater 1.0 species Terrimonas ferruginea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 -species Terrimonas ferruginea root:Engineered:Solid waste:Composting 1.0 species Terrimonas ferruginea root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Terrimonas ferruginea root:Engineered:Solid waste:Composting 1.0 species Terrimonas ferruginea root:Environmental:Aquatic:Estuary 1.0 species Terrimonas ferruginea root:Engineered:Wastewater:Industrial wastewater 1.0 species Terrimonas ferruginea root:Engineered:Food production:Fermented vegetables 1.0 @@ -65638,9 +67240,9 @@ species Tatlockia londiniensis root:Engineered:Bioreactor 1.0 species Tatlockia londiniensis root:Environmental:Terrestrial:Soil 1.0 species Chelatococcus asaccharovorans root:Engineered:Bioreactor 1.0 species Chelatococcus asaccharovorans root:Environmental:Terrestrial:Soil 2.0 +species Chelatococcus asaccharovorans root:Engineered:Lab enrichment 1.0 species Chelatococcus asaccharovorans root:Engineered:Bioreactor:Continuous culture 1.0 species Chelatococcus asaccharovorans root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 -species Chelatococcus asaccharovorans root:Engineered:Lab enrichment 1.0 species Steroidobacter schindleri root:Engineered:Bioreactor 1.0 genus Mangroviflexus root:Engineered:Bioreactor 1.0 species bacterium enrichment culture clone DPF35 root:Engineered:Bioreactor 1.0 @@ -65750,6 +67352,24 @@ species Gallionella alkalitolerans root:Environmental:Aquatic:Freshwater:Groundw species Fulvimarina meridiei root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Zoogloea subflava root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Zoogloea subflava root:Environmental:Aquatic:Marine:Sediment 1.0 +order Kordiimonadales root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +order Kordiimonadales root:Environmental:Aquatic:Marine:Sediment 2.0 +order Kordiimonadales root:Environmental:Aquatic:Marine:Brackish 1.0 +order Kordiimonadales root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Kordiimonadales root:Host-associated:Cnidaria 1.0 +family Kordiimonadaceae root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +family Kordiimonadaceae root:Environmental:Aquatic:Marine:Sediment 2.0 +family Kordiimonadaceae root:Environmental:Aquatic:Marine:Brackish 1.0 +species Rhizobiales bacterium NRL2 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 +species Rhizobiales bacterium NRL2 root:Environmental:Aquatic:Marine:Coastal 1.0 +species Rhizobiales bacterium NRL2 root:Environmental:Aquatic:Marine:Brackish 2.0 +species Kordiimonas lacus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Kordiimonas lacus root:Environmental:Aquatic:Marine:Brackish 1.0 +species Muricauda sp. MAR 2010 75 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Coniochaeta sp. 169 OA-2013 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Methyloceanibacter marginalis root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Methyloceanibacter marginalis root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Flavobacteriaceae bacterium CP2B root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Salinispora andropogonis root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Salinispora andropogonis root:Environmental:Terrestrial:Soil 1.0 species Flavobacterium stercorea root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -65793,7 +67413,7 @@ species Segetibacter koreensis root:Host-associated:Plants:Rhizosphere 1.0 species Dechloromonas sp. ECC1-pb1 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Acidobacteria bacterium LWQ4 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Acidobacteria bacterium LWQ4 root:Host-associated:Plants:Rhizosphere 1.0 -species Acidobacteria bacterium LWQ4 root:Environmental:Terrestrial:Soil 1.0 +species Acidobacteria bacterium LWQ4 root:Environmental:Terrestrial:Soil 2.0 species Acidobacteria bacterium LWQ4 root:Environmental:Terrestrial:Soil:Crop 1.0 species Mycobacterium intracellulare root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Desulfovibrio mobilis root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 @@ -65803,6 +67423,27 @@ species Vibrio damselae root:Environmental:Aquatic:Freshwater:Groundwater:Biofil species Vibrio damselae root:Engineered:Wastewater:Water and sludge 1.0 species Sutterella marcusii root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Chryseobacterium copri root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Sulfurirhabdus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Sulfurirhabdus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Pelagibius root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +genus Pelagibius root:Environmental:Aquatic:Marine:Sediment 3.0 +genus Pelagibius root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 +genus Pelagibius root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +genus Pelagibius root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +genus Pelagibius root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +genus Pelagibius root:Host-associated:Cnidaria 1.0 +genus Pelagibius root:Host-associated:Annelida:Digestive system 1.0 +genus Aestuariispira root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Aestuariispira sp. root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Aestuariispira sp. root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 +species Aestuariispira sp. root:Environmental:Aquatic:Marine:Volcanic 1.0 +species Thalassobaculum fulvum root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Pelagibius litoralis root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Pelagibius litoralis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Pelagibius litoralis root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Limibacillus halophilus root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 +species Limibacillus halophilus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 +species Thalassobacillus sp. S181 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Pedobacter sp. JJ3205 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 2.0 species Synechococcus sp. PCC 7902 root:Environmental:Aquatic:Freshwater:Groundwater:Biofilm 1.0 species Synechococcus sp. PCC 7902 root:Mixed 1.0 @@ -65864,6 +67505,7 @@ species Anaeromyxobacter sp. Fw109-5 root:Environmental:Aquatic:Freshwater:Lotic species Anaeromyxobacter sp. Fw109-5 root:Host-associated:Plants:Root 1.0 species Acidobacterium sp. WY65 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Acidobacterium sp. WY65 root:Mixed 1.0 +species Acidobacterium sp. WY65 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 family Mariprofundaceae root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 family Mariprofundaceae root:Environmental:Terrestrial:Soil 3.0 family Mariprofundaceae root:Environmental:Aquatic:Marine:Sediment 3.0 @@ -65922,6 +67564,7 @@ species Chloroflexi bacterium ADurb.Bin120 root:Mixed 2.0 species Chloroflexi bacterium ADurb.Bin120 root:Engineered:Wastewater 1.0 species Chloroflexi bacterium ADurb.Bin120 root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Chloroflexi bacterium ADurb.Bin120 root:Environmental:Aquatic:Marine:Intertidal zone:Sediment 1.0 +species Chloroflexi bacterium ADurb.Bin120 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Chloroflexi bacterium ADurb.Bin120 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 phylum Candidatus Amesbacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 phylum Candidatus Chisholmbacteria root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -65936,11 +67579,6 @@ species Komvophoron kgarii root:Environmental:Aquatic:Freshwater:Lotic:Sediment genus Olavius root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Nephtys root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 genus Nephtys root:Environmental:Aquatic:Marine:Coastal 1.0 -genus Sideroxydans root:Environmental:Aquatic:Freshwater:Lotic:Sediment 2.0 -genus Sideroxydans root:Environmental:Terrestrial:Soil 2.0 -genus Sideroxydans root:Environmental:Aquatic:Sediment 3.0 -genus Sideroxydans root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Sideroxydans root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Lactococcus piscium root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Olavius algarvensis root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species Acidiferrobacter thiooxydans root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -65986,6 +67624,7 @@ species Pasteuria sp. LX5 root:Environmental:Terrestrial:Soil 1.0 species bacterium enrichment culture clone R1492-4 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species beta proteobacterium WX163 root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species beta proteobacterium WX163 root:Environmental:Terrestrial:Soil:Contaminated 1.0 +species beta proteobacterium WX163 root:Host-associated:Plants:Rhizosphere 1.0 species beta proteobacterium WX163 root:Environmental:Terrestrial:Soil 2.0 species beta proteobacterium WX163 root:Environmental:Aquatic:Marine:Coastal 1.0 species beta proteobacterium WX163 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -66021,6 +67660,7 @@ species Alcanivorax indicus root:Environmental:Aquatic:Freshwater:Lotic:Sediment species Alcanivorax indicus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Alcanivorax indicus root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated 1.0 species Oceanibacterium hippocampi root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 +species Oceanibacterium hippocampi root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species bacterium A4(2011) root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species bacterium A3(2011b) root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 species bacterium A2(2011b) root:Environmental:Aquatic:Freshwater:Lotic:Sediment 1.0 @@ -66072,17 +67712,19 @@ species Candidatus Electronema palustris root:Environmental:Aquatic:Sediment 1.0 species Candidatus Electronema palustris root:Host-associated:Plants:Root 1.0 species Candidatus Electronema palustris root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Candidatus Electronema palustris root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +species Candidatus Electronema palustris root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Candidatus Electronema palustris root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Candidatus Electronema palustris root:Environmental 1.0 species Candidatus Electronema palustris root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 species Nitratireductor basaltis root:Engineered:Wastewater:Activated Sludge 2.0 species Tetrasphaera elongata root:Engineered:Wastewater:Activated Sludge 4.0 -species Candidatus Contendobacter odensis root:Engineered:Wastewater:Activated Sludge 2.0 +species Candidatus Contendobacter odensis root:Engineered:Wastewater:Activated Sludge 3.0 species Candidatus Contendobacter odensis root:Engineered:Bioreactor:Continuous culture 1.0 species Candidatus Contendobacter odensis root:Engineered:Wastewater:Water and sludge 1.0 +species Candidatus Contendobacter odensis root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Lactococcus raffinolactis root:Engineered:Wastewater:Activated Sludge 1.0 species Lactococcus raffinolactis root:Engineered:Wastewater 1.0 -species Lactococcus raffinolactis root:Engineered:Wastewater:Water and sludge 1.0 +species Lactococcus raffinolactis root:Engineered:Wastewater:Water and sludge 2.0 species Verrucomicrobia bacterium ADurb.Bin006 root:Engineered:Wastewater:Activated Sludge 10.0 species Spirochaetes bacterium ADurb.BinA120 root:Engineered:Wastewater:Activated Sludge 10.0 species candidate division TA06 bacterium ADurb.Bin131 root:Engineered:Wastewater:Activated Sludge 6.0 @@ -66096,7 +67738,7 @@ genus Methylophilus root:Engineered:Wastewater:Activated Sludge 1.0 genus Methylophilus root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 genus Rugosibacter root:Engineered:Wastewater:Activated Sludge 1.0 genus Rugosibacter root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -genus Candidatus Contendobacter root:Engineered:Wastewater:Activated Sludge 2.0 +genus Candidatus Contendobacter root:Engineered:Wastewater:Activated Sludge 3.0 genus Candidatus Contendobacter root:Engineered:Wastewater 2.0 genus Candidatus Contendobacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Candidatus Contendobacter root:Engineered:Wastewater:Water and sludge 1.0 @@ -66115,7 +67757,7 @@ genus Pseudobacteroides root:Engineered:Wastewater:Activated Sludge 7.0 genus Pseudobacteroides root:Engineered:Wastewater:Industrial wastewater 1.0 species Deltaproteobacteria bacterium ADurb.Bin207 root:Engineered:Wastewater:Activated Sludge 11.0 genus Sphaerotilus root:Engineered:Wastewater:Activated Sludge 1.0 -species Thiothrix eikelboomii root:Engineered:Wastewater:Activated Sludge 1.0 +species Thiothrix eikelboomii root:Engineered:Wastewater:Activated Sludge 2.0 species Thiothrix eikelboomii root:Engineered:Wastewater:Industrial wastewater 1.0 species Thiothrix eikelboomii root:Engineered:Wastewater:Water and sludge 1.0 species Sphaerotilus montanus root:Engineered:Wastewater:Activated Sludge 1.0 @@ -66127,7 +67769,7 @@ species Mycobacterium fallax root:Engineered:Wastewater:Activated Sludge 3.0 species Tangfeifania diversioriginum root:Engineered:Wastewater:Activated Sludge 1.0 species Tangfeifania diversioriginum root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 species Tangfeifania diversioriginum root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 -genus Tetrasphaera root:Engineered:Wastewater:Activated Sludge 6.0 +genus Tetrasphaera root:Engineered:Wastewater:Activated Sludge 7.0 genus Tetrasphaera root:Mixed 1.0 genus Tetrasphaera root:Environmental:Aquatic:Freshwater:Lentic 1.0 genus Tetrasphaera root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Bioreactor 1.0 @@ -66248,9 +67890,9 @@ genus Plasticicumulans root:Engineered:Wastewater:Activated Sludge 1.0 genus Aquimonas root:Engineered:Wastewater:Activated Sludge 1.0 genus Aquimonas root:Engineered:Wastewater 1.0 genus Aquimonas root:Engineered:Bioreactor:Continuous culture 1.0 -species Alphaproteobacteria bacterium CG1 02 46 17 root:Engineered:Wastewater:Activated Sludge 1.0 +species Alphaproteobacteria bacterium CG1 02 46 17 root:Engineered:Wastewater:Activated Sludge 2.0 species Alphaproteobacteria bacterium CG1 02 46 17 root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -species Hassallia byssoidea root:Engineered:Wastewater:Activated Sludge 1.0 +species Hassallia byssoidea root:Engineered:Wastewater:Activated Sludge 2.0 species Hassallia byssoidea root:Engineered:Wastewater 1.0 species Hassallia byssoidea root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Hassallia byssoidea root:Engineered:Wastewater:Water and sludge 1.0 @@ -66275,6 +67917,7 @@ species Planctomycetes bacterium ADurb.Bin069 root:Host-associated:Human:Digesti species Bacteroidetes bacterium OLB9 root:Engineered:Wastewater:Activated Sludge 6.0 species Bacteroidetes bacterium OLB9 root:Engineered:Wastewater 1.0 species Bacteroidetes bacterium OLB9 root:Environmental:Aquatic:Marine:Coastal 1.0 +species Bacteroidetes bacterium OLB9 root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 genus Ottowia root:Engineered:Wastewater:Activated Sludge 2.0 genus Ottowia root:Host-associated:Human:Digestive system:Oral 1.0 genus Defluviimonas root:Engineered:Wastewater:Activated Sludge 1.0 @@ -66283,8 +67926,8 @@ species Mycobacterium sp. KAR6 root:Engineered:Wastewater:Activated Sludge 1.0 species Thermobaculum sp. enrichment culture clone VanCtr100 root:Engineered:Wastewater:Activated Sludge 1.0 species Thermobaculum sp. enrichment culture clone VanCtr100 root:Environmental:Terrestrial:Soil 2.0 species Thermobaculum sp. enrichment culture clone VanCtr100 root:Environmental:Aquatic:Marine:Sediment 1.0 -species Thermobaculum sp. enrichment culture clone VanCtr100 root:Engineered:Lab enrichment:Defined media 7.0 species Thermobaculum sp. enrichment culture clone VanCtr100 root:Engineered:Lab enrichment 1.0 +species Thermobaculum sp. enrichment culture clone VanCtr100 root:Engineered:Lab enrichment:Defined media 7.0 species Legionella feeleii root:Engineered:Wastewater:Activated Sludge 1.0 species Burkholderia ureilyticus root:Engineered:Wastewater:Activated Sludge 1.0 species Burkholderia ureilyticus root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -66314,10 +67957,11 @@ species Plesiocystis exedens root:Host-associated:Plants:Rhizosphere 1.0 species Plesiocystis exedens root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Segetibacter multivorum root:Engineered:Wastewater:Activated Sludge 2.0 species Segetibacter multivorum root:Environmental:Terrestrial:Soil 1.0 -species Segetibacter multivorum root:Engineered:Bioreactor:Continuous culture 1.0 species Segetibacter multivorum root:Engineered:Lab enrichment 1.0 +species Segetibacter multivorum root:Engineered:Bioreactor:Continuous culture 1.0 genus Syntrophothermus root:Engineered:Wastewater:Activated Sludge 1.0 species Bacteroidales bacterium Bact 19 root:Engineered:Wastewater:Activated Sludge 2.0 +species Bacteroidales bacterium Bact 19 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Corchorus root:Engineered:Wastewater:Activated Sludge 1.0 genus Plasmopara root:Engineered:Wastewater:Activated Sludge 1.0 genus Plasmopara root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -66383,11 +68027,11 @@ species Mycobacterium insubricum root:Engineered:Wastewater:Activated Sludge 2.0 family Hexamitidae root:Engineered:Wastewater:Activated Sludge 1.0 species Tolumonas auensis root:Engineered:Wastewater:Activated Sludge 1.0 species Tolumonas auensis root:Engineered:Wastewater 3.0 +species Tolumonas auensis root:Engineered:Wastewater:Water and sludge 1.0 species Tolumonas auensis root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 species Methanoregula formicica root:Engineered:Wastewater:Activated Sludge 1.0 species Methanoregula formicica root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Methanoregula formicica root:Engineered:Bioremediation:Hydrocarbon 1.0 -species Propionivibrio dicarboxylicus root:Engineered:Wastewater:Activated Sludge 1.0 genus Citricoccus root:Engineered:Wastewater:Activated Sludge 1.0 genus Citricoccus root:Host-associated:Mammals 1.0 species Bacteroidetes bacterium 37-13 root:Engineered:Wastewater:Activated Sludge 1.0 @@ -66413,13 +68057,13 @@ species Hydrogenophaga terrigena root:Engineered:Wastewater:Water and sludge 1.0 species Blvii28 copri root:Engineered:Wastewater:Activated Sludge 1.0 species Blvii28 copri root:Engineered:Modeled 1.0 species Methanobacterium kanagiense root:Engineered:Wastewater:Activated Sludge 1.0 -genus Hoeflea root:Engineered:Wastewater:Activated Sludge 1.0 genus Caenorhabditis root:Engineered:Wastewater:Activated Sludge 1.0 genus Caenorhabditis root:Engineered:Wastewater 1.0 species Actinobacteria bacterium IMCC26207 root:Engineered:Wastewater:Activated Sludge 1.0 species Actinobacteria bacterium IMCC26207 root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 species Rhodospirillaceae bacterium CCH5-H10 root:Engineered:Wastewater:Activated Sludge 1.0 species Candidatus Peribacteria bacterium RIFOXYC1 FULL 58 8 root:Engineered:Wastewater:Activated Sludge 1.0 +species Candidatus Peribacteria bacterium RIFOXYC1 FULL 58 8 root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 species Nitrosomonas sp. Is79A3 root:Engineered:Wastewater:Activated Sludge 1.0 species Spumella-like flagellate JBNZ41 root:Engineered:Wastewater:Activated Sludge 1.0 species Spumella-like flagellate JBNZ41 root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C) 1.0 @@ -66456,6 +68100,14 @@ species Opitutus axonopodis root:Engineered:Wastewater:Activated Sludge 1.0 species Nitrospira moniliformis root:Engineered:Wastewater:Activated Sludge 1.0 species Nitrospira moniliformis root:Environmental:Aquatic:Freshwater 1.0 species Propionicimonas niigatensis root:Engineered:Wastewater:Activated Sludge 1.0 +family Candidatus Competibacteraceae root:Engineered:Wastewater:Activated Sludge 1.0 +family Candidatus Competibacteraceae root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Candidatus Accumulibacter phosphatis root:Engineered:Wastewater:Activated Sludge 1.0 +species Thiothrix sp. NKBI-C root:Engineered:Wastewater:Activated Sludge 1.0 +species Tetrasphaera jenkinsii root:Engineered:Wastewater:Activated Sludge 1.0 +species Dechloromonas sp. UWNR2 root:Engineered:Wastewater:Activated Sludge 1.0 +species Thiothrix sp. KRN-B2 root:Engineered:Wastewater:Activated Sludge 1.0 +species Thiothrix sp. KRN-B2 root:Engineered:Wastewater 1.0 genus Pectinatus root:Engineered:Wastewater:Activated Sludge 1.0 genus Pectinatus root:Host-associated:Insecta:Digestive system 1.0 species Lactobacillus halophilus root:Engineered:Wastewater:Activated Sludge 1.0 @@ -66486,7 +68138,6 @@ species Nisaea phthalicus root:Environmental:Aquatic:Non-marine Saline and Alkal species Prochlorococcus margaritifera root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 species Oceanicaulis hamelinense root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 species Chondromyces lovleyi root:Environmental:Aquatic:Non-marine Saline and Alkaline 1.0 -family Dermacoccaceae root:Host-associated:Human:Skin 1.0 genus Lawsonella root:Host-associated:Human:Skin 11.0 genus Lawsonella root:Mixed 3.0 genus Lawsonella root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -66496,6 +68147,7 @@ genus Lawsonella root:Engineered:Built environment 2.0 genus Lawsonella root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 genus Lawsonella root:Host-associated:Human:Circulatory system 1.0 genus Dermacoccus root:Host-associated:Human:Skin 1.0 +genus Dermacoccus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Corynebacterium ureicelerivorans root:Host-associated:Human:Skin 4.0 species Chryseobacterium molle root:Host-associated:Human:Skin 1.0 species Beta vulgaris root:Host-associated:Human:Skin 6.0 @@ -66530,6 +68182,7 @@ species Desulfovibrionales bacterium canine oral taxon 009 root:Host-associated: species Desulfovibrionales bacterium canine oral taxon 009 root:Host-associated:Human:Digestive system:Oral 1.0 species Corynebacterium accolens root:Host-associated:Human:Skin 4.0 species Corynebacterium accolens root:Host-associated:Mammals 1.0 +species Corynebacterium accolens root:Engineered:Food production:Fermented beverages 1.0 species Corynebacterium accolens root:Host-associated:Human:Respiratory system:Nasopharyngeal 4.0 species Corynebacterium accolens root:Engineered:Built environment 1.0 species Corynebacterium accolens root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 2.0 @@ -66632,7 +68285,7 @@ species Craurococcus sp. HM28-1 root:Mixed 1.0 species Craurococcus sp. HM28-1 root:Environmental:Terrestrial:Soil:Desert 1.0 species Craurococcus roseus root:Host-associated:Human:Skin 1.0 species Craurococcus roseus root:Mixed 2.0 -species Craurococcus roseus root:Environmental:Aquatic:Marine:Sediment 1.0 +species Craurococcus roseus root:Environmental:Aquatic:Marine:Sediment 2.0 genus Acetatifactor root:Host-associated:Human:Skin 1.0 genus Acetatifactor root:Host-associated:Human:Circulatory system 1.0 species Deinococcus antarcticus root:Host-associated:Human:Skin 1.0 @@ -66691,14 +68344,17 @@ species 1-68 parvula root:Host-associated:Human:Digestive system:Oral 1.0 species Kocuria rhizophila root:Host-associated:Human:Skin 1.0 species Dermacoccus nishinomiyaensis root:Host-associated:Human:Skin 1.0 family Steroidobacteraceae root:Environmental:Terrestrial:Soil:Permafrost 1.0 +family Steroidobacteraceae root:Host-associated:Plants:Rhizosphere 1.0 family Steroidobacteraceae root:Environmental:Terrestrial:Soil 1.0 +family Steroidobacteraceae root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +family Steroidobacteraceae root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Methanobacterium sp. SMA-27 root:Environmental:Terrestrial:Soil:Permafrost 3.0 species Chara globularis root:Environmental:Terrestrial:Soil:Permafrost 1.0 species Cyprididae sp. JMM-2003 root:Environmental:Terrestrial:Soil:Permafrost 1.0 order JG30-KF-CM45 root:Environmental:Terrestrial:Soil:Permafrost 1.0 order JG30-KF-CM45 root:Environmental:Terrestrial:Soil 1.0 -order JG30-KF-CM45 root:Environmental:Terrestrial:Soil:Desert 1.0 order JG30-KF-CM45 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order JG30-KF-CM45 root:Environmental:Terrestrial:Soil:Desert 1.0 order JG30-KF-CM45 root:Environmental:Terrestrial:Soil:Oil-contaminated 2.0 family 211ds20 root:Environmental:Terrestrial:Soil:Permafrost 1.0 family 211ds20 root:Engineered:Food production 1.0 @@ -66744,6 +68400,7 @@ species Lentisphaerae bacterium GWF2 50 93 root:Environmental:Terrestrial:Soil:P species Lentisphaerae bacterium GWF2 50 93 root:Mixed 1.0 species Lentisphaerae bacterium GWF2 50 93 root:Environmental:Terrestrial:Soil 1.0 species Lentisphaerae bacterium GWF2 50 93 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +species Lentisphaerae bacterium GWF2 50 93 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 family EB1017 root:Environmental:Terrestrial:Soil:Permafrost 2.0 family EB1017 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 family EB1017 root:Environmental:Terrestrial:Soil 1.0 @@ -66825,6 +68482,7 @@ species Thiobacillus thioparus root:Environmental:Terrestrial:Soil:Permafrost 1. species Thiobacillus thioparus root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Thiobacillus thioparus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Thiobacillus thioparus root:Environmental:Aquatic:Sediment 1.0 +species Thiobacillus thioparus root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species PSB-M-3 p-1630-c5 root:Environmental:Terrestrial:Soil:Permafrost 1.0 species WCHB1-05 acanthamoebae root:Environmental:Terrestrial:Soil:Permafrost 1.0 species GOUTA19 p-1630-c5 root:Environmental:Terrestrial:Soil:Permafrost 1.0 @@ -66939,8 +68597,9 @@ species Truepera radiovictrix root:Environmental:Aquatic:Non-marine Saline and A species Chlorosarcina brevispinosa root:Mixed 1.0 genus Oryza root:Mixed 1.0 genus Oryza root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Oryza root:Host-associated:Plants:Rhizosphere:Soil 2.0 genus Oryza root:Environmental:Aquatic:Freshwater 1.0 -genus Oryza root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Oryza root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 genus Oryza root:Host-associated:Microbial 1.0 species Kushneria indalinina root:Mixed 1.0 species Kushneria indalinina root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -66951,8 +68610,8 @@ species Arthrobacter sp. W-3 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Cyclobacterium sp. P81 root:Mixed 1.0 species Cyclobacterium sp. P81 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Oryza longistaminata root:Mixed 1.0 -species Oryza longistaminata root:Environmental:Aquatic:Freshwater 1.0 species Oryza longistaminata root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Oryza longistaminata root:Environmental:Aquatic:Freshwater 1.0 species Oryza longistaminata root:Host-associated:Microbial 1.0 species Deinococcus yavapaiensis root:Mixed 1.0 species Deinococcus yavapaiensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -66977,23 +68636,34 @@ species Natronomonas sp. CBA1134 root:Host-associated:Invertebrates:Cnidaria:Cor species Natronomonas sp. CBA1134 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 3.0 species candidate divison MSBL1 archaeon SCGC-AAA382N08 root:Mixed 1.0 species candidate divison MSBL1 archaeon SCGC-AAA382N08 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Arcobacter cryaerophilus root:Mixed 1.0 +species Arcobacter cryaerophilus root:Engineered:Wastewater 2.0 +species Arcobacter cryaerophilus root:Environmental:Terrestrial:Soil 1.0 +species Arcobacter cryaerophilus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 +species Arcobacter cryaerophilus root:Environmental:Aquatic:Freshwater 1.0 +species Arcobacter cryaerophilus root:Engineered:Wastewater:Water and sludge 3.0 +species Arcobacter cryaerophilus root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 +species Arcobacter cryaerophilus root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +species Candidatus Rickettsiella isopodorum root:Mixed 2.0 +species Candidatus Rickettsiella isopodorum root:Host-associated:Plants:Phylloplane 1.0 species Niabella terrae root:Mixed 1.0 species Niabella ginsengisoli root:Mixed 1.0 species Aquimonas sp. enrichment culture clone 03SUJ1 root:Mixed 1.0 +species Aquimonas sp. enrichment culture clone 03SUJ1 root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Rickettsiella root:Mixed 1.0 genus Rickettsiella root:Environmental:Terrestrial:Soil 1.0 genus Rickettsiella root:Environmental:Aquatic 1.0 genus Rickettsiella root:Host-associated:Insecta 1.0 -species Candidatus Rickettsiella isopodorum root:Mixed 1.0 -species Candidatus Rickettsiella isopodorum root:Host-associated:Plants:Phylloplane 1.0 species Rickettsiella symbiont of Asellus aquaticus root:Mixed 1.0 species Rickettsiella symbiont of Asellus aquaticus root:Engineered:Wastewater:Industrial wastewater 1.0 species Kurthia sibirica root:Mixed 1.0 species Clostridiales bacterium DTU053 root:Mixed 1.0 species Clostridiales bacterium DTU053 root:Engineered:Bioreactor:Continuous culture 1.0 species Clostridiales bacterium DTU053 root:Engineered:Wastewater:Water and sludge 1.0 +species Clostridiales bacterium DTU053 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Simplicispira psychrophila root:Mixed 1.0 species Tenericutes bacterium ADurb.Bin239 root:Mixed 1.0 +species Tenericutes bacterium ADurb.Bin239 root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 genus Silicimonas root:Mixed 1.0 species Candidatus Poribacteria bacterium WGA-A3 root:Mixed 2.0 species Candidatus Poribacteria bacterium WGA-A3 root:Host-associated:Porifera 3.0 @@ -67054,8 +68724,8 @@ species iron-reducing bacterium enrichment culture clone FEA 2 C3 root:Mixed 1.0 species iron-reducing bacterium enrichment culture clone FEA 2 C3 root:Environmental:Aquatic:Marine:Sediment 1.0 species Deferrisoma camini root:Mixed 1.0 species Deferrisoma camini root:Environmental:Aquatic:Marine:Sediment 3.0 -species Deferrisoma camini root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Deferrisoma camini root:Engineered:Lab enrichment 1.0 +species Deferrisoma camini root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species cyanobacterium SC-1 root:Mixed 1.0 species Sedimentibacter sp. B4 root:Mixed 1.0 species Sphaerochaeta pleomorpha root:Mixed 1.0 @@ -67123,7 +68793,7 @@ species Gemmatimonas aurantiaca root:Environmental:Aquatic:Estuary 3.0 species Gemmatimonas aurantiaca root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Gemmatimonas aurantiaca root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 species planctomycete WY69 root:Mixed 1.0 -species planctomycete WY69 root:Environmental:Terrestrial:Soil 1.0 +species planctomycete WY69 root:Environmental:Terrestrial:Soil 2.0 species planctomycete WY69 root:Environmental:Terrestrial:Soil:Crop 1.0 species agricultural soil bacterium SC-I-11 root:Mixed 1.0 species agricultural soil bacterium SC-I-11 root:Environmental:Terrestrial:Soil 1.0 @@ -67157,6 +68827,7 @@ species Galdieria maxima root:Mixed 1.0 species Galdieria maxima root:Environmental:Aquatic:Thermal springs 1.0 species Oscillatoria sp. Cy nb1 root:Mixed 1.0 species Roseomonas sp. CMC-CF140 root:Mixed 1.0 +species Campylobacter sp. RM12175 root:Mixed 1.0 species Paenibacillus darwinianus root:Host-associated:Mammals 1.0 species Corynebacterium bovis root:Host-associated:Mammals 1.0 species Corynebacterium bovis root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 @@ -67167,6 +68838,7 @@ genus Acetobacter root:Engineered:Food production:Fermented beverages 3.0 genus Acetobacter root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Acetobacter root:Engineered:Food production 2.0 genus Acetobacter root:Host-associated:Animal:Digestive system 1.0 +genus Acetobacter root:Host-associated:Insecta:Digestive system 1.0 genus Acetobacter root:Host-associated:Insecta 1.0 genus Acetobacter root:Engineered:Food production:Fermented vegetables 2.0 genus Acetobacter root:Host-associated:Arthropoda 1.0 @@ -67184,6 +68856,9 @@ species gamma proteobacterium JD-F-2 root:Host-associated:Mammals 1.0 species Ralstonia sp. OV225 root:Host-associated:Mammals 1.0 species Ralstonia sp. OV225 root:Environmental:Aquatic:Marine:Sediment 1.0 species Ralstonia sp. OV225 root:Host-associated:Birds:Digestive system:Ceca 1.0 +class Aves root:Host-associated:Mammals 1.0 +genus Anaerobiospirillum root:Host-associated:Mammals 1.0 +genus Medicago root:Host-associated:Mammals 1.0 order Honigbergiellida root:Host-associated:Mammals 1.0 family Honigbergiellidae root:Host-associated:Mammals 1.0 genus Fonticula root:Host-associated:Mammals 1.0 @@ -67244,9 +68919,6 @@ species Neisseria canis root:Host-associated:Mammals:Digestive system:Large inte species Nesterenkonia sp. JCM 19054 root:Host-associated:Mammals 1.0 species bacterium V9D2006 root:Host-associated:Mammals 1.0 species bacterium V9D2006 root:Engineered:Food production:Dairy products 1.0 -species Mycoplasma moatsii root:Host-associated:Mammals 1.0 -species Mycoplasma moatsii root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Mycoplasma moatsii root:Host-associated:Animal:Digestive system 1.0 genus Enteractinococcus root:Host-associated:Mammals 1.0 genus Georgenia root:Host-associated:Mammals 1.0 genus Georgenia root:Engineered:Wastewater 1.0 @@ -67261,6 +68933,7 @@ genus Reyranella root:Host-associated:Mammals 1.0 genus Reyranella root:Host-associated:Plants:Rhizosphere 1.0 genus Reyranella root:Environmental:Aquatic:Freshwater:Drinking water 2.0 genus Reyranella root:Host-associated:Insecta:Digestive system 1.0 +genus Reyranella root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Reyranella root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Reyranella root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 species Cupriavidus necator root:Host-associated:Mammals 1.0 @@ -67293,7 +68966,6 @@ species Neofamilia massiliensis root:Engineered:Built environment 1.0 species Neofamilia massiliensis root:Host-associated:Animal 1.0 species Salinicoccus albus root:Host-associated:Mammals 1.0 species Nocardioides sp. Soil774 root:Host-associated:Mammals 1.0 -species Dietzia alimentaria root:Host-associated:Mammals 1.0 genus Arcanobacterium root:Host-associated:Mammals 1.0 genus Arcanobacterium root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Aerococcus vaginalis root:Host-associated:Mammals 1.0 @@ -67302,7 +68974,6 @@ species Aerococcus vaginalis root:Host-associated:Mammals:Skin 1.0 species Moraxella oblonga root:Host-associated:Mammals 1.0 species Arcanobacterium canis root:Host-associated:Mammals 1.0 species Streptococcus sp. 27155-01 root:Host-associated:Mammals 1.0 -species Streptococcus varani root:Host-associated:Mammals 1.0 species Sutterella ureilyticus root:Host-associated:Mammals 1.0 species Sutterella ureilyticus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Sutterella ureilyticus root:Host-associated:Plants:Rhizome 1.0 @@ -67365,17 +69036,18 @@ species bacterium CYCU-0217 root:Host-associated:Amphibia 1.0 species Pseudomonas pulmonis root:Host-associated:Amphibia 1.0 species Pseudomonas pulmonis root:Host-associated:Plants:Phylloplane 2.0 species Pseudomonas pulmonis root:Environmental:Terrestrial:Soil 3.0 +species Pseudomonas pulmonis root:Engineered:Lab enrichment 1.0 species Pseudomonas pulmonis root:Engineered:Food production:Fermented seafood 1.0 species Pseudomonas pulmonis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 species Pseudomonas pulmonis root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm) 1.0 species Pseudomonas pulmonis root:Host-associated:Insecta 1.0 -species Pseudomonas pulmonis root:Engineered:Lab enrichment 1.0 species Pseudomonas pulmonis root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Pseudomonas pulmonis root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Fimbriimonas stercoris root:Host-associated:Amphibia 1.0 species Fimbriimonas stercoris root:Environmental:Terrestrial:Soil 1.0 species Fimbriimonas stercoris root:Host-associated:Mammals:Nervous system:Brain 1.0 order Mucorales root:Engineered:Food production:Fermented beverages 1.0 +order Mucorales root:Engineered:Lab enrichment 1.0 order Mucorales root:Engineered:Food production:Fermented vegetables 1.0 order Selaginellales root:Engineered:Food production:Fermented beverages 1.0 family Saccharomycodaceae root:Engineered:Food production:Fermented beverages 2.0 @@ -67386,12 +69058,14 @@ family Metschnikowiaceae root:Engineered:Food production 1.0 family Lichtheimiaceae root:Engineered:Food production:Fermented beverages 1.0 family Lichtheimiaceae root:Engineered:Solid waste:Composting 1.0 family Mucoraceae root:Engineered:Food production:Fermented beverages 1.0 +family Mucoraceae root:Engineered:Lab enrichment 1.0 family Selaginellaceae root:Engineered:Food production:Fermented beverages 1.0 genus Hanseniaspora root:Engineered:Food production:Fermented beverages 2.0 genus Tatumella root:Engineered:Food production:Fermented beverages 2.0 genus Lichtheimia root:Engineered:Food production:Fermented beverages 1.0 genus Mucor root:Engineered:Food production:Fermented beverages 1.0 genus Mucor root:Environmental:Terrestrial:Soil 1.0 +genus Mucor root:Engineered:Lab enrichment 1.0 genus Selaginella root:Engineered:Food production:Fermented beverages 1.0 species Tatumella ptyseos root:Engineered:Food production:Fermented beverages 1.0 species Metschnikowia fructicola root:Engineered:Food production:Fermented beverages 1.0 @@ -67404,6 +69078,13 @@ species Mucor racemosus root:Engineered:Food production:Fermented vegetables 1.0 species Lichtheimia ramosa root:Engineered:Food production:Fermented beverages 1.0 species Lichtheimia ramosa root:Host-associated:Mammals:Digestive system:Stomach 1.0 species Lichtheimia ramosa root:Engineered:Solid waste:Composting 1.0 +genus Tetragenococcus root:Engineered:Food production:Fermented beverages 1.0 +genus Tetragenococcus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Tetragenococcus root:Engineered:Food production:Fermented seafood 1.0 +genus Tetragenococcus root:Environmental:Terrestrial:Soil:Crop 1.0 +genus Tetragenococcus root:Host-associated:Birds:Digestive system 1.0 +genus Tetragenococcus root:Engineered:Food production:Fermented vegetables 3.0 +species Yersinia pestis root:Engineered:Food production:Fermented beverages 1.0 genus Sporanaerobacter root:Engineered:Food production:Fermented beverages 1.0 genus Sporanaerobacter root:Environmental:Terrestrial:Soil 1.0 genus Sporanaerobacter root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -67429,6 +69110,7 @@ genus Tanticharoenia root:Environmental:Terrestrial:Soil 4.0 genus Tanticharoenia root:Host-associated:Plants:Root 1.0 genus Tanticharoenia root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 species Brettanomyces bruxellensis root:Engineered:Food production:Fermented beverages 1.0 +species Brettanomyces bruxellensis root:Engineered:Food production:Dairy products 1.0 species Brettanomyces bruxellensis root:Engineered:Food production:Fermented vegetables 1.0 genus Acidipropionibacterium root:Engineered:Food production:Fermented beverages 1.0 genus Acidipropionibacterium root:Engineered:Food production:Dairy products 1.0 @@ -67445,10 +69127,11 @@ species Lactobacillus vaccinostercus root:Engineered:Food production:Fermented b species Starmerella bacillaris root:Engineered:Food production:Fermented beverages 1.0 species Starmerella bacillaris root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Lactobacillus plantarum root:Engineered:Food production:Fermented beverages 2.0 -species Lactobacillus plantarum root:Engineered:Food production:Dairy products 1.0 +species Lactobacillus plantarum root:Engineered:Food production:Dairy products 2.0 species Lactobacillus plantarum root:Environmental:Terrestrial:Soil 1.0 species Lactobacillus plantarum root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Lactobacillus plantarum root:Engineered:Food production:Fermented seafood 1.0 +species Lactobacillus plantarum root:Host-associated:Insecta:Digestive system 1.0 species Lactobacillus plantarum root:Host-associated:Fish:Digestive system:Foregut 1.0 species Lactobacillus plantarum root:Engineered:Food production:Fermented vegetables 1.0 species Lactobacillus plantarum root:Host-associated:Human:Circulatory system:Blood 1.0 @@ -67470,6 +69153,7 @@ species Hygrocybe aff. neofirma CFMR BZ-1926 root:Engineered:Food production:Fer genus Gluconacetobacter root:Engineered:Food production:Fermented beverages 1.0 genus Gluconacetobacter root:Environmental:Terrestrial:Soil 2.0 genus Gluconacetobacter root:Engineered:Food production 1.0 +genus Gluconacetobacter root:Host-associated:Insecta:Digestive system 1.0 species Shewanella subflava root:Engineered:Food production:Fermented beverages 1.0 species Segetibacter stercorea root:Engineered:Food production:Fermented beverages 1.0 species Gluconobacter rhaeticus root:Engineered:Food production:Fermented beverages 1.0 @@ -67543,8 +69227,6 @@ species Leptolyngbya obliquus root:Engineered:Wastewater 1.0 species Turicibacter oeni root:Engineered:Wastewater 1.0 species Solirubrobacter stercoris root:Engineered:Wastewater 1.0 family Bogoriellaceae root:Engineered:Wastewater 1.0 -genus Chromohalobacter root:Engineered:Wastewater 1.0 -genus Chromohalobacter root:Environmental:Terrestrial:Soil:Crop 1.0 species bacterium enrichment culture clone PA190 root:Engineered:Wastewater 1.0 species Aminomonas paucivorans root:Engineered:Wastewater 2.0 species Aminomonas paucivorans root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -67583,6 +69265,7 @@ species Arcobacter butzleri root:Engineered:Wastewater 1.0 species Arcobacter butzleri root:Environmental:Aquatic:Marine:Sediment 2.0 species Arcobacter butzleri root:Environmental:Aquatic:Freshwater 1.0 species Arcobacter butzleri root:Environmental:Aquatic:Marine:Coastal 1.0 +species Arcobacter butzleri root:Engineered:Wastewater:Water and sludge 1.0 species Sulfurospirillum deleyianum root:Engineered:Wastewater 1.0 species Clostridiales bacterium enrichment culture clone 06-1235251-67 root:Engineered:Wastewater 1.0 species Desulfomicrobium sp. enrichment culture clone LDC-15 root:Engineered:Wastewater 1.0 @@ -67595,9 +69278,9 @@ genus Aquicella root:Environmental:Aquatic:Freshwater 1.0 genus Aquicella root:Environmental:Aquatic:Marine:Coastal 1.0 genus Aquicella root:Engineered:Solid waste:Composting 1.0 genus Azospira root:Engineered:Wastewater 1.0 +genus Azospira root:Engineered:Lab enrichment 1.0 genus Azospira root:Engineered:Bioreactor:Continuous culture 1.0 genus Azospira root:Engineered:Wastewater:Water and sludge 1.0 -genus Azospira root:Engineered:Lab enrichment 1.0 genus Azospira root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Azospira root:Host-associated:Microbial 1.0 species Hankyongella aquatica root:Engineered:Wastewater 1.0 @@ -67611,6 +69294,7 @@ species Chitinophagaceae bacterium IBVUCB1 root:Environmental:Aquatic:Freshwater species Sebaldella termitidis root:Engineered:Wastewater 1.0 species Sebaldella termitidis root:Host-associated:Plants:Rhizosphere 1.0 species Sebaldella termitidis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sebaldella termitidis root:Engineered:Wastewater:Water and sludge 1.0 species Sebaldella termitidis root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 species Sebaldella termitidis root:Host-associated:Insecta 1.0 species Paenibacillus sp. 32O-W root:Engineered:Wastewater 1.0 @@ -67618,6 +69302,7 @@ species Candidatus Magasanikbacteria bacterium RIFOXYD1 FULL 40 23 root:Engineer species Candidatus Magasanikbacteria bacterium RIFOXYD1 FULL 40 23 root:Host-associated:Plants:Root 1.0 phylum Candidatus Yonathbacteria root:Engineered:Wastewater 1.0 phylum Candidatus Yonathbacteria root:Environmental:Aquatic:Marine:Brackish 2.0 +phylum Candidatus Yonathbacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 phylum Candidatus Yonathbacteria root:Engineered:Wastewater:Water and sludge 1.0 phylum Candidatus Yonathbacteria root:Environmental:Aquatic:Aquaculture 1.0 species Parcubacteria bacterium RAAC4 OD1 1 root:Engineered:Wastewater 1.0 @@ -67636,6 +69321,7 @@ species Acidobacteriales bacterium 59-55 root:Engineered:Wastewater 2.0 species Microbacterium sp. Leaf347 root:Engineered:Wastewater 1.0 species Microbacterium sp. Leaf347 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Legionella parisiensis root:Engineered:Wastewater 1.0 +species Legionella parisiensis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Rhizobium sp. P44RR-XXIV root:Engineered:Wastewater 1.0 species Pandoraea sp. B-6 root:Engineered:Wastewater 1.0 species Sphingopyxis wittichii root:Engineered:Wastewater 1.0 @@ -67655,13 +69341,6 @@ species Diploscapter sp. JU359 root:Engineered:Wastewater 2.0 species Diploscapter sp. JU359 root:Host-associated:Plants:Rhizosphere 1.0 species Paramecium tetraurelia root:Engineered:Wastewater 1.0 species Magnusiomyces magnusii root:Engineered:Wastewater 1.0 -species Arcobacter cryaerophilus root:Engineered:Wastewater 2.0 -species Arcobacter cryaerophilus root:Environmental:Terrestrial:Soil 1.0 -species Arcobacter cryaerophilus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 -species Arcobacter cryaerophilus root:Environmental:Aquatic:Freshwater 1.0 -species Arcobacter cryaerophilus root:Engineered:Wastewater:Water and sludge 2.0 -species Arcobacter cryaerophilus root:Engineered:Bioremediation:Terephthalate:Wastewater 1.0 -species Arcobacter cryaerophilus root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 species Tetrahymena pyriformis root:Engineered:Wastewater 1.0 species Burkholderiales bacterium JGI 0001002-H06 root:Engineered:Wastewater 1.0 species Oscheius dolichura root:Engineered:Wastewater 1.0 @@ -67671,7 +69350,6 @@ species Colpodella sp. HLJ root:Engineered:Wastewater 1.0 species Curviditis sp. JLR-2009 root:Engineered:Wastewater 1.0 species Clostridiales bacterium enrichment culture clone 2z-3 root:Engineered:Wastewater 1.0 species bacterium CYCU-0215 root:Engineered:Wastewater 1.0 -species Thiothrix sp. KRN-B2 root:Engineered:Wastewater 1.0 family Hartmannellidae root:Engineered:Wastewater 1.0 family Hartmannellidae root:Environmental:Aquatic:Freshwater 1.0 family Hartmannellidae root:Environmental:Aquatic:Freshwater:Drinking water 1.0 @@ -67687,10 +69365,10 @@ phylum [Parvarchaeota] root:Engineered:Bioreactor:Continuous culture:Marine sedi phylum [Parvarchaeota] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 family [Balneolaceae] root:Engineered:Wastewater 1.0 family [Balneolaceae] root:Environmental:Terrestrial:Soil 5.0 +family [Balneolaceae] root:Host-associated:Plants:Rhizosphere:Soil 1.0 family [Balneolaceae] root:Environmental:Aquatic:Marine:Coastal 1.0 family [Balneolaceae] root:Engineered:Solid waste:Composting 1.0 family [Balneolaceae] root:Environmental:Terrestrial:Soil:Desert 4.0 -family [Balneolaceae] root:Host-associated:Plants:Rhizosphere:Soil 1.0 family [Balneolaceae] root:Engineered 1.0 family [Balneolaceae] root:Environmental:Terrestrial:Soil:Mine drainage 1.0 family [Balneolaceae] root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 @@ -67747,7 +69425,6 @@ species Veillonellaceae bacterium DNF00626 root:Host-associated:Human:Reproducti species Prevotella amnii root:Host-associated:Human:Reproductive system:Vagina 5.0 species Prevotella amnii root:Host-associated:Human:Reproductive system:Female 1.0 species Gardnerella vaginalis root:Host-associated:Human:Reproductive system:Vagina 3.0 -species Aerococcus christensenii root:Host-associated:Human:Reproductive system:Vagina 1.0 species Moryella sp. KHD1 root:Host-associated:Human:Reproductive system:Vagina 1.0 species Moryella sp. KHD1 root:Environmental:Aquatic:Marine:Sediment 1.0 species Lactobacillus coleohominis root:Host-associated:Human:Reproductive system:Vagina 1.0 @@ -67815,6 +69492,30 @@ species Galbibacter marinus root:Environmental:Aquatic:Marine:Intertidal zone:Es species Galbibacter marinus root:Environmental:Aquatic:Marine:Sediment 1.0 species Galbibacter marinus root:Engineered:Solid waste:Composting 1.0 species Galbibacter marinus root:Host-associated:Mammals:Skin 1.0 +class Heterotrichea root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +class Heterotrichea root:Environmental:Aquatic:Freshwater 1.0 +class Heterotrichea root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 +class Heterotrichea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +order Heterotrichida root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +order Heterotrichida root:Environmental:Aquatic:Freshwater 1.0 +order Heterotrichida root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +family Mytilidae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +family Condylostomatidae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Methyloprofundus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Methyloprofundus root:Environmental:Aquatic:Marine:Sediment 7.0 +genus Methyloprofundus root:Environmental:Aquatic:Sediment 1.0 +genus Methyloprofundus root:Environmental:Aquatic:Marine:Cold seeps 1.0 +genus Methyloprofundus root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 +genus Bathymodiolus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Condylostoma root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +genus Condylostoma root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 +species Methyloprofundus sedimenti root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Bathymodiolus brevior root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Dermacoccus sp. PE3 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Phlyctochytrium planicorne root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Stentor coeruleus root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Reichenbachiella faecimaris root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Reichenbachiella faecimaris root:Environmental:Aquatic:Marine:Brackish 1.0 species actinobacterium SCGC AAA023-J06 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 genus Chrysaora root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 genus Chrysaora root:Environmental:Aquatic:Estuary 1.0 @@ -67823,9 +69524,6 @@ species Flavobacterium cucumis root:Environmental:Aquatic:Marine:Intertidal zone species Flavobacterium cucumis root:Environmental:Aquatic:Freshwater 1.0 species Pseudoalteromonas tunicata root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 3.0 species Pseudoalteromonas tunicata root:Environmental:Aquatic:Estuary 3.0 -species Synechococcus sp. CB0205 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 4.0 -species Synechococcus sp. CB0205 root:Environmental:Aquatic:Estuary 1.0 -species Synechococcus sp. CB0205 root:Environmental:Aquatic:Marine:Brackish 1.0 species Algibacter pectinivorans root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 2.0 species Algibacter pectinivorans root:Environmental:Aquatic:Estuary 1.0 species Picochlorum sp. SENEW3 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -67857,9 +69555,9 @@ species Burkholderia alaskensis root:Environmental:Terrestrial:Soil:Contaminated species Burkholderia alaskensis root:Host-associated:Plants:Rhizosphere 1.0 species Burkholderia alaskensis root:Environmental:Terrestrial:Soil 1.0 species Burkholderia alaskensis root:Environmental:Terrestrial:Soil:Wetlands 1.0 +species Burkholderia alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Burkholderia alaskensis root:Environmental:Aquatic:Freshwater:Drinking water 1.0 species Burkholderia alaskensis root:Environmental:Terrestrial:Soil:Desert 1.0 -species Burkholderia alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Burkholderia alaskensis root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Burkholderia alaskensis root:Environmental:Aquatic:Aquaculture 1.0 species Polaribacter sp. KT 15 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 @@ -67920,6 +69618,11 @@ genus Nitidotellina root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1. species Rhizosolenia imbricata root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Pseudo-nitzschia multiseries root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Pseudo-nitzschia multiseries root:Environmental:Aquatic:Marine:Neritic zone 1.0 +species Protoperidinium leonis root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species Protoperidinium leonis root:Environmental:Aquatic:Marine:Sediment 2.0 +species Euphausia superba root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species methanotrophic bacterial endosymbiont of Bathymodiolus sp. root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 +species methanotrophic bacterial endosymbiont of Bathymodiolus sp. root:Environmental:Aquatic:Marine:Sediment 1.0 species Opitutus terrae root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Rhodobacter sp. SL24 root:Environmental:Aquatic:Marine:Intertidal zone:Estuary 1.0 species Rhodobacter sp. SL24 root:Environmental:Aquatic:Estuary 1.0 @@ -67947,9 +69650,6 @@ species Ottowia sp. oral taxon 894 root:Host-associated:Human:Digestive system:O species Ottowia sp. oral taxon 894 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 3.0 species Tannerella sp. oral taxon HOT-286 root:Host-associated:Human:Digestive system:Oral 1.0 species Tannerella sp. oral taxon HOT-286 root:Host-associated:Human:Respiratory system:Pulmonary system:Sputum 1.0 -species Selenomonas sputigena root:Host-associated:Human:Digestive system:Oral 4.0 -species Selenomonas sputigena root:Host-associated:Human:Digestive system 2.0 -species Selenomonas sputigena root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 3.0 species Bacteroidales genomosp. P3 oral clone MB1 G34 root:Host-associated:Human:Digestive system:Oral 1.0 species TM7 phylum sp. oral clone BU080 root:Host-associated:Human:Digestive system:Oral 2.0 species TM7 phylum sp. oral clone BU080 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 @@ -67957,7 +69657,7 @@ species TM7 phylum sp. oral clone BU080 root:Host-associated:Human:Digestive sys species Porphyromonas sp. oral taxon 278 root:Host-associated:Human:Digestive system:Oral 5.0 species Leptotrichia sp. oral clone IK040 root:Host-associated:Human:Digestive system:Oral 4.0 species Leptotrichia sp. oral clone IK040 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 -species [Eubacterium] yurii root:Host-associated:Human:Digestive system:Oral 3.0 +species [Eubacterium] yurii root:Host-associated:Human:Digestive system:Oral 4.0 species [Eubacterium] yurii root:Host-associated:Human:Digestive system 1.0 species [Eubacterium] yurii root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 species Treponema socranskii root:Host-associated:Human:Digestive system:Oral 3.0 @@ -68001,7 +69701,6 @@ species Azospirillum sp. 51 20 root:Host-associated:Human:Digestive system:Oral species Prevotella nanceiensis root:Host-associated:Human:Digestive system:Oral 2.0 species Prevotella nanceiensis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Prevotella nanceiensis root:Engineered:Food production 1.0 -species Prevotella sp. oral taxon 299 root:Host-associated:Human:Digestive system:Oral 1.0 genus Parascardovia root:Host-associated:Human:Digestive system:Oral 2.0 species Bifidobacteriaceae genomosp. C1 root:Host-associated:Human:Digestive system:Oral 1.0 species bacterium enrichment culture clone R3-1 root:Host-associated:Human:Digestive system:Oral 1.0 @@ -68037,16 +69736,22 @@ species Clostridiales bacterium canine oral taxon 260 root:Host-associated:Human species Clostridiales bacterium canine oral taxon 260 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Firmicutes oral clone CH017 root:Host-associated:Human:Digestive system:Oral 1.0 species Faucicola mancuniensis root:Host-associated:Human:Digestive system:Oral 1.0 +species Faucicola mancuniensis root:Host-associated:Insecta 1.0 +genus Peptoanaerobacter root:Host-associated:Human:Digestive system:Oral 1.0 +species Olsenella sp. oral taxon 807 root:Host-associated:Human:Digestive system:Oral 2.0 +species Anaerolineaceae bacterium oral taxon 439 root:Host-associated:Human:Digestive system:Oral 2.0 +species Peptostreptococcaceae bacterium oral taxon 113 root:Host-associated:Human:Digestive system:Oral 1.0 +species Campylobacter showae root:Host-associated:Human:Digestive system:Oral 1.0 +species Campylobacter showae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Kingella genomosp. P1 oral cone MB2 C20 root:Host-associated:Human:Digestive system:Oral 2.0 species Kingella genomosp. P1 oral cone MB2 C20 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 genus Fretibacterium root:Host-associated:Human:Digestive system:Oral 1.0 +genus Fretibacterium root:Host-associated:Mammals:Digestive system:Midgut 1.0 genus Fretibacterium root:Host-associated:Human:Digestive system:Oral:Periodontal pockets 1.0 genus Fretibacterium root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 species Prevotella sp. oral clone ASCG12 root:Host-associated:Human:Digestive system:Oral 1.0 species Prevotella sp. oral clone ASCG12 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 species Bergeyella zoohelcum root:Host-associated:Human:Digestive system:Oral 1.0 -species [Eubacterium] sulci root:Host-associated:Human:Digestive system:Oral 1.0 -species [Eubacterium] sulci root:Host-associated:Human:Digestive system:Oral:tongue dorsum 1.0 species Mogibacterium timidum root:Host-associated:Human:Digestive system:Oral 2.0 species Mogibacterium timidum root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 species Capnocytophaga sp. oral clone ID062 root:Host-associated:Human:Digestive system:Oral 1.0 @@ -68061,8 +69766,6 @@ species Capnocytophaga tannerae root:Host-associated:Human:Digestive system:Oral genus Pseudopropionibacterium root:Host-associated:Human:Digestive system:Oral 1.0 species Methanobrevibacter oralis root:Host-associated:Human:Digestive system:Oral 1.0 species Methanobrevibacter oralis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 -species Olsenella sp. oral taxon 807 root:Host-associated:Human:Digestive system:Oral 1.0 -species Anaerolineaceae bacterium oral taxon 439 root:Host-associated:Human:Digestive system:Oral 1.0 species Pseudopropionibacterium propionicum root:Host-associated:Human:Digestive system:Oral 1.0 species Pseudopropionibacterium propionicum root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Actinomyces sp. oral taxon 414 root:Host-associated:Human:Digestive system:Oral 1.0 @@ -68077,10 +69780,6 @@ species Prevotella multisaccharivorax root:Host-associated:Human:Digestive syste species Lactobacillus nagelii root:Host-associated:Human:Digestive system:Oral 1.0 species Prevotella sp. P2A FAAD4 root:Host-associated:Human:Digestive system:Oral 1.0 species Prevotella sp. P2A FAAD4 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral 1.0 -species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system 2.0 -species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 2.0 -species Actinobaculum sp. oral taxon 183 root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 species Pseudoramibacter alactolyticus root:Host-associated:Human:Digestive system:Oral 1.0 species Lactobacillus ultunensis root:Host-associated:Human:Digestive system:Oral 1.0 species Neisseria macacae root:Host-associated:Human:Digestive system:Oral 1.0 @@ -68186,6 +69885,11 @@ species Lactococcus oeni root:Engineered:Food production:Dairy products 1.0 species Marinomonas dieselolei root:Engineered:Food production:Dairy products 1.0 species Arcobacter succinatimandens root:Engineered:Food production:Dairy products 1.0 species Arcobacter succinatimandens root:Host-associated:Insecta:Digestive system 1.0 +genus Kazachstania root:Engineered:Food production:Dairy products 1.0 +species Kazachstania saulgeensis root:Engineered:Food production:Dairy products 1.0 +species Microvirgula aerodenitrificans root:Engineered:Food production:Dairy products 1.0 +species Microvirgula aerodenitrificans root:Engineered:Lab enrichment:Defined media 1.0 +species Microvirgula aerodenitrificans root:Host-associated:Insecta:Digestive system 1.0 species Streptococcus mesenteroides root:Engineered:Food production:Dairy products 1.0 species Pseudomonas parainfluenzae root:Engineered:Food production:Dairy products 1.0 species Pseudomonas parainfluenzae root:Host-associated:Plants:Rhizosphere 1.0 @@ -68206,8 +69910,6 @@ species Psychrobacter sanguinis root:Environmental:Aquatic 2.0 species Psychrobacter sanguinis root:Engineered:Food production 1.0 species Psychrobacter sanguinis root:Environmental:Terrestrial:Soil:Sand 1.0 species Psychrobacter sanguinis root:Engineered:Wastewater:Water and sludge 1.0 -order Araneae root:Engineered:Food production:Dairy products 1.0 -order Araneae root:Environmental:Aquatic:Marine:Sediment 1.0 species Streptococcus macedonicus root:Engineered:Food production:Dairy products 1.0 species Streptococcus macedonicus root:Host-associated:Birds:Digestive system:Ceca 1.0 species Streptococcus macedonicus root:Engineered:Biogas plant 1.0 @@ -68228,6 +69930,7 @@ species Staphylococcus equorum root:Host-associated:Insecta 1.0 species Psychrobacter marincola root:Engineered:Food production:Dairy products 1.0 species Psychrobacter marincola root:Engineered:Solid waste:Composting 1.0 species Vagococcus salmoninarum root:Engineered:Food production:Dairy products 2.0 +species Vagococcus salmoninarum root:Host-associated:Insecta:Digestive system 1.0 species Vagococcus salmoninarum root:Environmental:Terrestrial:Agricultural field 1.0 species Staphylococcus mirabilis root:Engineered:Food production:Dairy products 1.0 species Lactococcus garvieae root:Engineered:Food production:Dairy products 2.0 @@ -68316,8 +70019,8 @@ species bacterium PJ-25 root:Engineered:Food production:Dairy products 1.0 species Streptococcus cibaria root:Engineered:Food production:Dairy products 1.0 species Comamonas delafieldii root:Engineered:Food production:Dairy products 1.0 species Acinetobacter parasuis root:Engineered:Food production:Dairy products 1.0 -species Acinetobacter parasuis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Acinetobacter parasuis root:Engineered:Lab enrichment 1.0 +species Acinetobacter parasuis root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Shewanella agarivorans root:Engineered:Food production:Dairy products 1.0 species Marinobacter kashmirensis root:Engineered:Food production:Dairy products 1.0 species Lactobacillus psychrotolerans root:Engineered:Food production:Dairy products 1.0 @@ -68328,10 +70031,10 @@ genus Nitrosovibrio root:Engineered:Wastewater:Industrial wastewater 1.0 genus Nitrosovibrio root:Environmental:Aquatic:Lentic 1.0 genus CandidatusProtochlamydia root:Environmental:Terrestrial:Soil:Contaminated 1.0 genus CandidatusProtochlamydia root:Environmental:Terrestrial:Soil 3.0 +genus CandidatusProtochlamydia root:Engineered:Lab enrichment 1.0 genus CandidatusProtochlamydia root:Environmental:Terrestrial:Soil:Clay 1.0 genus CandidatusProtochlamydia root:Engineered:Bioreactor:Continuous culture 1.0 genus CandidatusProtochlamydia root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 -genus CandidatusProtochlamydia root:Engineered:Lab enrichment 1.0 species Magnetospirillum brasilense root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Nitrosovibrio tenuis root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Nitrosovibrio tenuis root:Environmental:Terrestrial:Soil 1.0 @@ -68421,6 +70124,7 @@ species Williamsia sp. 1135 root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Nocardioides alpinus root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Nocardioides alpinus root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Polaromonas naphthalenivorans root:Environmental:Terrestrial:Soil:Contaminated 1.0 +species Polaromonas naphthalenivorans root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Microbacterium sp. C448 root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Patulibacter minatonensis root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Patulibacter minatonensis root:Engineered:Solid waste:Composting 1.0 @@ -68502,8 +70206,8 @@ species Planctomyces rosea root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Planctomyces rosea root:Host-associated:Plants:Phylloplane 1.0 species Planctomyces rosea root:Host-associated:Plants:Rhizosphere 2.0 species Planctomyces rosea root:Environmental:Terrestrial:Soil 1.0 -species Planctomyces rosea root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 species Planctomyces rosea root:Engineered:Lab enrichment 1.0 +species Planctomyces rosea root:Host-associated:Plants:Rhizosphere:Forest soil 3.0 species Planctomyces rosea root:Environmental:Terrestrial:Soil:Mine drainage 1.0 species Nitrospira longum root:Environmental:Terrestrial:Soil:Contaminated 1.0 species Nitrospira longum root:Environmental:Terrestrial:Soil 1.0 @@ -68546,6 +70250,7 @@ species Paenibacillus sp. Soil724D2 root:Host-associated:Plants:Phylloplane 1.0 genus Alkanindiges root:Host-associated:Plants:Phylloplane 1.0 genus Alkanindiges root:Environmental:Aquatic:Marine:Sediment 1.0 genus Alkanindiges root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +genus Alkanindiges root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 genus Alkanindiges root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Alkanindiges root:Host-associated:Animal 1.0 species Janthinobacterium ampelinus root:Host-associated:Plants:Phylloplane 1.0 @@ -68665,9 +70370,9 @@ species Sphingomonas astaxanthinifaciens root:Host-associated:Plants:Rhizosphere species Hypochthonius rufulus root:Host-associated:Plants:Rhizosphere 4.0 species Rhizobium leguminosarum root:Host-associated:Plants:Rhizosphere 5.0 species Rhizobium leguminosarum root:Environmental:Terrestrial:Soil 1.0 -species Rhizobium leguminosarum root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 -species Rhizobium leguminosarum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Rhizobium leguminosarum root:Engineered:Modeled:Simulated communities (microbial mixture) 2.0 species Rhizobium leguminosarum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Rhizobium leguminosarum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Rhizobium leguminosarum root:Environmental:Aquatic:Marine:Oceanic:Photic zone 1.0 genus Oscheius root:Host-associated:Plants:Rhizosphere 1.0 genus Rudaea root:Host-associated:Plants:Rhizosphere 4.0 @@ -68696,7 +70401,7 @@ species Kouleothrix ferruginea root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Flavobacterium vinacea root:Host-associated:Plants:Rhizosphere 1.0 species Flavobacterium vinacea root:Environmental:Terrestrial:Soil 1.0 species Methylibium ochracea root:Host-associated:Plants:Rhizosphere 1.0 -species Steroidobacter flavus root:Host-associated:Plants:Rhizosphere 1.0 +species Steroidobacter flavus root:Host-associated:Plants:Rhizosphere 2.0 species Hyphomicrobiaceae bacterium WX185 root:Host-associated:Plants:Rhizosphere 1.0 species Hyphomicrobiaceae bacterium WX185 root:Environmental:Terrestrial:Deep subsurface 2.0 species Methylobacillus flagellatus root:Host-associated:Plants:Rhizosphere 1.0 @@ -68794,6 +70499,7 @@ species Rhodospirillales bacterium URHD0017 root:Host-associated:Plants:Rhizosph species Rhodospirillales bacterium URHD0017 root:Environmental:Terrestrial:Soil 1.0 species Rhodospirillales bacterium URHD0017 root:Host-associated:Plants:Root 1.0 family Geminicoccaceae root:Host-associated:Plants:Rhizosphere 1.0 +family Geminicoccaceae root:Host-associated:Arthropoda:Digestive system:Gut 1.0 family Geminicoccaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species planctomycete WY108 root:Host-associated:Plants:Rhizosphere 1.0 species Medicago truncatula (barrel medic) root:Host-associated:Plants:Rhizosphere 1.0 @@ -68896,6 +70602,7 @@ species Hymenobacter sp. IS2118 root:Host-associated:Plants:Rhizosphere 1.0 species Rudaea cellulosilytica root:Host-associated:Plants:Rhizosphere 1.0 species Rudaea cellulosilytica root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Parcubacteria bacterium C7867-005 root:Host-associated:Plants:Rhizosphere 1.0 +species Parcubacteria bacterium C7867-005 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus HB2-32-21 root:Host-associated:Plants:Rhizosphere 1.0 genus HB2-32-21 root:Environmental:Aquatic 1.0 genus HB2-32-21 root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -68915,8 +70622,8 @@ order S0208 root:Host-associated:Plants:Rhizosphere 1.0 order S0208 root:Engineered:Bioreactor:Continuous culture 1.0 order Sva0725 root:Host-associated:Plants:Rhizosphere 1.0 order Sva0725 root:Environmental:Terrestrial:Soil 2.0 -order Sva0725 root:Environmental:Terrestrial:Soil:Desert 1.0 order Sva0725 root:Host-associated:Plants:Rhizosphere:Soil 2.0 +order Sva0725 root:Environmental:Terrestrial:Soil:Desert 1.0 species Caldilinea lacus root:Host-associated:Plants:Rhizosphere 1.0 species Desulfotignum propionicica root:Host-associated:Plants:Rhizosphere 1.0 species LCP-6 litorale root:Host-associated:Plants:Rhizosphere 1.0 @@ -68925,6 +70632,14 @@ species Propionigenium litorale root:Host-associated:Plants:Rhizosphere 1.0 species Rheinheimera turnerae root:Host-associated:Plants:Rhizosphere 1.0 species Desulfarculus marina root:Host-associated:Plants:Rhizosphere 1.0 species Luteimonas rosenbergii root:Host-associated:Plants:Rhizosphere 1.0 +genus Ammoniphilus root:Host-associated:Plants:Rhizosphere 1.0 +genus Ammoniphilus root:Environmental:Aquatic:Marine:Sediment 1.0 +species Pseudanabaena sp. SCSIO S3 root:Host-associated:Plants:Rhizosphere 1.0 +species Stenotrophobacter roseus root:Host-associated:Plants:Rhizosphere 1.0 +species Stenotrophobacter roseus root:Environmental:Terrestrial:Soil 1.0 +species Myxococcales bacterium Gsoil 473 root:Host-associated:Plants:Rhizosphere 2.0 +species Pseudanabaena galeata root:Host-associated:Plants:Rhizosphere 1.0 +species Pseudanabaena galeata root:Host-associated:Plants:Root 1.0 species bacterium enrichment culture clone 51 root:Host-associated:Plants:Rhizosphere 1.0 species bacterium enrichment culture clone 51 root:Environmental:Aquatic:Marine:Sediment 3.0 species bacterium enrichment culture clone 51 root:Host-associated:Invertebrates:Echinodermata 1.0 @@ -68933,7 +70648,7 @@ species Nitrospira hungatei root:Environmental:Terrestrial:Soil 2.0 species Acremonium curvulum root:Host-associated:Plants:Rhizosphere 1.0 species Telaepolella sp. Tib190 root:Host-associated:Plants:Rhizosphere 1.0 species Sphingobacterium sp. P-7 root:Host-associated:Plants:Rhizosphere 1.0 -species Sphingobacterium sp. P-7 root:Environmental:Terrestrial:Soil 3.0 +species Sphingobacterium sp. P-7 root:Environmental:Terrestrial:Soil 4.0 species Cercomonas edax root:Host-associated:Plants:Rhizosphere 1.0 species Cercomonas edax root:Environmental:Terrestrial:Soil 1.0 species Cercomonas edax root:Engineered:Solid waste:Composting 1.0 @@ -68942,6 +70657,12 @@ species Proleptomonas faecicola root:Environmental:Terrestrial:Deep subsurface 3 species Neochlamydia sp. Trut23-12-2015 Venoge-Embouchure root:Host-associated:Plants:Rhizosphere 1.0 species Neochlamydia sp. Trut23-12-2015 Venoge-Embouchure root:Environmental:Terrestrial:Soil 1.0 species Neochlamydia sp. Trut23-12-2015 Venoge-Embouchure root:Environmental:Terrestrial:Deep subsurface 1.0 +species Actinomadura sp. N8 root:Host-associated:Plants:Rhizosphere 1.0 +species Tenggerimyces mesophilus root:Host-associated:Plants:Rhizosphere 1.0 +species Prauserella sp. YIM 121212 root:Host-associated:Plants:Rhizosphere 1.0 +species Pseudonocardia sp. 4218 root:Host-associated:Plants:Rhizosphere 1.0 +species Pseudonocardia acaciae root:Host-associated:Plants:Rhizosphere 1.0 +species beta proteobacterium LX29 root:Host-associated:Plants:Rhizosphere 1.0 species Microvirga ossetica root:Host-associated:Plants:Rhizosphere 1.0 species Rhizobacter sp. Root404 root:Host-associated:Plants:Rhizosphere 1.0 species Streptomyces viridiviolaceus root:Host-associated:Plants:Rhizosphere 1.0 @@ -69038,8 +70759,10 @@ species Sunxiuqinia elliptica root:Environmental:Aquatic:Marine:Coastal:Sediment species Thiohalobacter thiocyanaticus root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Thiohalobacter thiocyanaticus root:Environmental:Aquatic:Marine:Sediment 2.0 species Thiohalobacter thiocyanaticus root:Environmental:Aquatic:Sediment 1.0 +species Thiohalobacter thiocyanaticus root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Thiohalobacter thiocyanaticus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Thiohalobacter thiocyanaticus root:Environmental:Aquatic:Freshwater:Wetlands:Sediment 1.0 +family Sabiaceae root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Thiorhodospira sibirica root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species candidate division Zixibacteria bacterium SM1 73 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species candidate division Zixibacteria bacterium SM1 73 root:Environmental:Aquatic:Marine:Sediment 5.0 @@ -69152,7 +70875,7 @@ species Haloplanus sp. LZ 23S87 root:Environmental:Aquatic:Non-marine Saline and species Candidatus Bathyarchaeota archaeon JdFR-10 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 species Candidatus Bathyarchaeota archaeon JdFR-10 root:Environmental:Aquatic:Marine:Sediment 2.0 species Thermoplasmatales archaeon SCGC AB-539-N05 root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 -species Thermoplasmatales archaeon SCGC AB-539-N05 root:Environmental:Aquatic:Marine:Sediment 6.0 +species Thermoplasmatales archaeon SCGC AB-539-N05 root:Environmental:Aquatic:Marine:Sediment 7.0 species Thermoplasmatales archaeon SCGC AB-539-N05 root:Environmental:Aquatic:Marine:Cold seeps 1.0 species Thermoplasmatales archaeon SCGC AB-539-N05 root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Aestuariicella root:Environmental:Aquatic:Marine:Coastal:Sediment 1.0 @@ -69231,10 +70954,6 @@ species Achromobacter castellanii root:Environmental:Aquatic:Freshwater:Wetlands species Bacteroides equi root:Environmental:Aquatic:Freshwater:Wetlands 1.0 species Bacteroides equi root:Engineered:Lab enrichment:Defined media 1.0 species RFN20 lausannensis root:Environmental:Aquatic:Freshwater:Wetlands 1.0 -species Bradyrhizobium elkanii root:Environmental:Terrestrial:Soil 1.0 -species Bradyrhizobium elkanii root:Host-associated:Human:Digestive system 1.0 -species Bradyrhizobium elkanii root:Environmental:Aquatic:Freshwater 1.0 -species Bradyrhizobium elkanii root:Engineered 1.0 species Roseiflexus succinicans root:Environmental:Terrestrial:Soil 1.0 species Swaminathania rosea root:Environmental:Terrestrial:Soil 1.0 species Swaminathania rosea root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -69248,10 +70967,11 @@ family Oligoflexaceae root:Environmental:Terrestrial:Soil 1.0 family Oligoflexaceae root:Host-associated:Porifera 1.0 family Oligoflexaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 family Oligoflexaceae root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 1.0 -species Saccharopolyspora rectivirgula root:Environmental:Terrestrial:Soil 1.0 +species Saccharopolyspora rectivirgula root:Environmental:Terrestrial:Soil 2.0 species Saccharopolyspora rectivirgula root:Engineered:Solid waste:Composting 1.0 species Saccharopolyspora rectivirgula root:Engineered:Built environment 1.0 species Saccharopolyspora rectivirgula root:Host-associated:Birds 2.0 +species Saccharopolyspora rectivirgula root:Host-associated:Plants:Rhizoplane:Soil 1.0 species Saccharopolyspora rectivirgula root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 species Spirosoma sp. 15J10-9T5 root:Environmental:Terrestrial:Soil 1.0 species Sugitazyma miyagiana root:Environmental:Terrestrial:Soil 1.0 @@ -69333,18 +71053,22 @@ phylum Ochrophyta root:Environmental:Terrestrial:Soil 1.0 phylum Oomycota root:Environmental:Terrestrial:Soil 1.0 class Incertae sedis root:Environmental:Terrestrial:Soil 1.0 class Incertae sedis root:Host-associated:Fish:Digestive system:Intestine 1.0 +class Incertae sedis root:Host-associated:Fungi 1.0 class Monocotyledonae root:Environmental:Terrestrial:Soil 1.0 order Thelebolales root:Environmental:Terrestrial:Soil 1.0 order Thelebolales root:Environmental:Aquatic:Freshwater 1.0 order Incertae sedis root:Environmental:Terrestrial:Soil 1.0 order Incertae sedis root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Incertae sedis root:Host-associated:Fungi 1.0 family Hypocreaceae root:Environmental:Terrestrial:Soil 1.0 +family Hypocreaceae root:Engineered:Lab enrichment 1.0 family Hypocreaceae root:Host-associated:Plants:Root 1.0 family Pyronemataceae root:Environmental:Terrestrial:Soil 1.0 family Pyronemataceae root:Host-associated:Plants:Root 1.0 family Pyronemataceae root:Environmental:Terrestrial:Soil:Clay 1.0 genus Exophiala root:Environmental:Terrestrial:Soil 1.0 genus Trichoderma root:Environmental:Terrestrial:Soil 1.0 +genus Trichoderma root:Engineered:Lab enrichment 1.0 genus Trichoderma root:Host-associated:Plants:Root 1.0 genus Scenedesmus root:Environmental:Terrestrial:Soil 1.0 genus Coelastrella root:Environmental:Terrestrial:Soil 1.0 @@ -69353,12 +71077,37 @@ species Exophiala sp root:Environmental:Terrestrial:Soil 1.0 species Scenedesmus sp root:Environmental:Terrestrial:Soil 1.0 species Onygenales sp root:Environmental:Terrestrial:Soil 1.0 species Lasiosphaeriaceae sp root:Environmental:Terrestrial:Soil 1.0 -species Mortierella sp root:Environmental:Terrestrial:Soil 1.0 +species Mortierella sp root:Environmental:Terrestrial:Soil 2.0 species Mortierella sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Pythium sp root:Environmental:Terrestrial:Soil 1.0 species Ascobolus sp root:Environmental:Terrestrial:Soil 1.0 species Streptophyta sp root:Environmental:Terrestrial:Soil 1.0 species Coelastrella terrestris root:Environmental:Terrestrial:Soil 1.0 +class Mucoromycotina cls Incertae sedis root:Environmental:Terrestrial:Soil 1.0 +class Mucoromycotina cls Incertae sedis root:Host-associated:Plants:Root 1.0 +class GS35 root:Environmental:Terrestrial:Soil 1.0 +class Xylonomycetes root:Environmental:Terrestrial:Soil 1.0 +class Xylonomycetes root:Host-associated:Plants:Root 2.0 +order Mucoromycotina ord Incertae sedis root:Environmental:Terrestrial:Soil 1.0 +order Coniochaetales root:Environmental:Terrestrial:Soil 2.0 +family Amanitaceae root:Environmental:Terrestrial:Soil 1.0 +family Amanitaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +family Piskurozymaceae root:Environmental:Terrestrial:Soil 1.0 +family Piskurozymaceae root:Engineered:Built environment 1.0 +family Trimorphomycetaceae root:Environmental:Terrestrial:Soil 1.0 +family Mucoromycotina fam Incertae sedis root:Environmental:Terrestrial:Soil 1.0 +genus Solicoccozyma root:Environmental:Terrestrial:Soil 1.0 +genus Amanita root:Environmental:Terrestrial:Soil 1.0 +genus Amanita root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +genus Saitozyma root:Environmental:Terrestrial:Soil 1.0 +genus Bifiguratus root:Environmental:Terrestrial:Soil 1.0 +genus Lactifluus root:Environmental:Terrestrial:Soil 1.0 +species Bifiguratus sp root:Environmental:Terrestrial:Soil 1.0 +species Amanita sp root:Environmental:Terrestrial:Soil 1.0 +species Amanita sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +species Lactifluus glaucescens root:Environmental:Terrestrial:Soil 1.0 +species Clavulina sp root:Environmental:Terrestrial:Soil 1.0 +species Clavulina sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Corallococcus root:Environmental:Terrestrial:Soil 1.0 genus Corallococcus root:Environmental:Terrestrial:Soil:Clay 1.0 species Corallococcus exiguus root:Environmental:Terrestrial:Soil 1.0 @@ -69408,11 +71157,9 @@ species Sideroxydans lithotrophicus root:Environmental:Aquatic:Sediment 1.0 species Sideroxydans lithotrophicus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Sideroxydans lithotrophicus root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Arthrobacter sp. CC-CFT-010 root:Environmental:Terrestrial:Soil 1.0 -species candidate division NC10 bacterium CSP1-5 root:Environmental:Terrestrial:Soil 1.0 species Adhaeribacter terreus root:Environmental:Terrestrial:Soil 1.0 -species Bacteroidetes bacterium CHC2 root:Environmental:Terrestrial:Soil 2.0 +species Bacteroidetes bacterium CHC2 root:Environmental:Terrestrial:Soil 3.0 species Bacteroidetes bacterium CHC2 root:Environmental:Terrestrial:Soil:Loam:Agricultural 1.0 -species Stenotrophobacter roseus root:Environmental:Terrestrial:Soil 1.0 species Thermodesulfovibrio mobilis root:Environmental:Terrestrial:Soil 1.0 class PRR-11 root:Environmental:Terrestrial:Soil 1.0 class PRR-11 root:Environmental:Terrestrial:Soil:Loam:Forest soil 1.0 @@ -69422,10 +71169,11 @@ genus Dysgonomonas root:Host-associated:Insecta:Digestive system 1.0 genus Dysgonomonas root:Host-associated:Insecta 1.0 genus Dysgonomonas root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 genus Dysgonomonas root:Host-associated:Mollusca:Digestive system 1.0 +genus Dysgonomonas root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 genus Dysgonomonas root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 species Geobacter sulfodismutans root:Environmental:Terrestrial:Soil 1.0 -species Geobacter sulfodismutans root:Engineered:Bioreactor:Continuous culture 1.0 species Geobacter sulfodismutans root:Engineered:Lab enrichment 1.0 +species Geobacter sulfodismutans root:Engineered:Bioreactor:Continuous culture 1.0 species Magnetospirillum massiliensis root:Environmental:Terrestrial:Soil 1.0 species Dysgonomonas plebeius root:Environmental:Terrestrial:Soil 1.0 species Methanocella bryantii root:Environmental:Terrestrial:Soil 2.0 @@ -69472,7 +71220,7 @@ species Veillonella maritimum root:Environmental:Terrestrial:Soil 1.0 species heteroC45 4W debontii root:Environmental:Terrestrial:Soil 2.0 species heteroC45 4W debontii root:Engineered:Biogas plant:Wet fermentation 1.0 species heteroC45 4W debontii root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 -species Ktedonobacter racemifer root:Environmental:Terrestrial:Soil 2.0 +species Ktedonobacter racemifer root:Environmental:Terrestrial:Soil 3.0 species Rhodospirillales bacterium URHD0088 root:Environmental:Terrestrial:Soil 1.0 genus Anaerobranca root:Environmental:Terrestrial:Soil 3.0 species Anaerobranca difficile root:Environmental:Terrestrial:Soil 1.0 @@ -69533,6 +71281,8 @@ genus Ramlibacter root:Environmental:Terrestrial:Soil 2.0 genus Ramlibacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Ramlibacter root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Ramlibacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline 1.0 +genus Ramlibacter root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Ramlibacter root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 species Fritschea eriococci root:Environmental:Terrestrial:Soil 1.0 species Fritschea eriococci root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 species Flavisolibacter dorotheae root:Environmental:Terrestrial:Soil 1.0 @@ -69550,6 +71300,10 @@ species Sphingomonas yabuuchiae root:Environmental:Terrestrial:Soil 1.0 species Rhizobium sullae root:Environmental:Terrestrial:Soil 1.0 species Chitinophaga arvensicola root:Environmental:Terrestrial:Soil 2.0 species Sphingomonas nucifera root:Environmental:Terrestrial:Soil 1.0 +species Paenibacillus sp. 27-9 root:Environmental:Terrestrial:Soil 5.0 +species Paenibacillus sp. 27-9 root:Environmental:Terrestrial:Soil:Grasslands 1.0 +species Paenibacillus sp. 27-9 root:Host-associated:Insecta 1.0 +species Sphingomonas daechungensis root:Environmental:Terrestrial:Soil 1.0 species Shewanella tenuis root:Environmental:Terrestrial:Soil 1.0 species Bacillus applanata root:Environmental:Terrestrial:Soil 1.0 species Alicyclobacillus applanata root:Environmental:Terrestrial:Soil 1.0 @@ -69578,6 +71332,7 @@ species Thiobacillus sp. K6.2 root:Environmental:Terrestrial:Soil 1.0 species Candidatus Nostocoida acidiphila root:Environmental:Terrestrial:Soil 1.0 species Candidatus Nostocoida acidiphila root:Environmental:Terrestrial:Volcanic 1.0 species Candidatus Saccharibacteria bacterium GW2011 GWC2 44 17 root:Environmental:Terrestrial:Soil 1.0 +species Candidatus Saccharibacteria bacterium GW2011 GWC2 44 17 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species bacterium Ellin5299 root:Environmental:Terrestrial:Soil 1.0 species bacterium SOSP1-142 root:Environmental:Terrestrial:Soil 1.0 species bacterium SOSP1-142 root:Host-associated:Plants:Rhizosphere:Soil 1.0 @@ -69622,8 +71377,8 @@ species Rhodanobacter taiwanensis root:Engineered:Wastewater:Nutrient removal:Ni species Rubrobacter serinedens root:Environmental:Terrestrial:Soil 1.0 species Rubrobacter serinedens root:Environmental:Terrestrial:Soil:Desert 1.0 species Yonghaparkia caricis root:Environmental:Terrestrial:Soil 1.0 -species Yonghaparkia caricis root:Environmental:Terrestrial:Soil:Desert 1.0 species Yonghaparkia caricis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Yonghaparkia caricis root:Environmental:Terrestrial:Soil:Desert 1.0 species Yonghaparkia caricis root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Yonghaparkia caricis root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Yonghaparkia caricis root:Host-associated:Plants:Rhizome 1.0 @@ -69647,9 +71402,6 @@ genus Telluria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Telluria chitinolytica root:Environmental:Terrestrial:Soil 1.0 species Nitrospira biforme root:Environmental:Terrestrial:Soil 1.0 species Planctomycetaceae bacterium SCGC AG-212-F19 root:Environmental:Terrestrial:Soil 1.0 -species Paenibacillus sp. 27-9 root:Environmental:Terrestrial:Soil 4.0 -species Paenibacillus sp. 27-9 root:Environmental:Terrestrial:Soil:Grasslands 1.0 -species Paenibacillus sp. 27-9 root:Host-associated:Insecta 1.0 species Acidobacteria bacterium Ellin7137 root:Environmental:Terrestrial:Soil 3.0 species Spirobacillus cienkowskii root:Environmental:Terrestrial:Soil 1.0 species Acidobacteriaceae bacterium A2-4c root:Environmental:Terrestrial:Soil 2.0 @@ -69659,6 +71411,7 @@ species Oxalobacter ampelinus root:Environmental:Terrestrial:Soil 1.0 species Oxalobacter ampelinus root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Gluconacetobacter diazotrophicus root:Environmental:Terrestrial:Soil 2.0 species Gluconacetobacter diazotrophicus root:Engineered:Food production 1.0 +species Gluconacetobacter diazotrophicus root:Host-associated:Insecta:Digestive system 1.0 species Humitalea rosea root:Environmental:Terrestrial:Soil 1.0 species Humitalea rosea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Humitalea rosea root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 @@ -69748,6 +71501,11 @@ species Pseudomonas symbiotica root:Environmental:Terrestrial:Soil 1.0 species Marinobacter fasciculatus root:Environmental:Terrestrial:Soil 2.0 species Acinetobacter symbiotica root:Environmental:Terrestrial:Soil 1.0 species Actinocorallia mesophila root:Environmental:Terrestrial:Soil 1.0 +genus Labilithrix root:Environmental:Terrestrial:Soil 1.0 +species Betaproteobacteria bacterium RIFCSPLOWO2 12 FULL 64 23 root:Environmental:Terrestrial:Soil 1.0 +species Placocista sp. CC-Grouse Mountain root:Environmental:Terrestrial:Soil 1.0 +species Placocista sp. CC-Grouse Mountain root:Engineered:Solid waste:Composting 1.0 +species Takakia lepidozioides root:Environmental:Terrestrial:Soil 1.0 species gamma proteobacterium WY1 root:Environmental:Terrestrial:Soil 2.0 species gamma proteobacterium WY1 root:Host-associated:Insecta 1.0 species Shewanella intermedium root:Environmental:Terrestrial:Soil 1.0 @@ -69767,7 +71525,7 @@ family Thermoactinomycetaceae root:Environmental:Terrestrial:Soil 2.0 family Thermoactinomycetaceae root:Engineered:Solid waste:Composting 1.0 family Thermoactinomycetaceae root:Engineered:Food production:Fermented vegetables 1.0 family Thermoactinomycetaceae root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 -genus Aneurinibacillus root:Environmental:Terrestrial:Soil 1.0 +genus Aneurinibacillus root:Environmental:Terrestrial:Soil 2.0 genus Cellulosibacter root:Environmental:Terrestrial:Soil 1.0 species Brevibacillus terranovensis root:Environmental:Terrestrial:Soil 1.0 species Clostridium thermosuccinogenes root:Environmental:Terrestrial:Soil 1.0 @@ -69777,9 +71535,11 @@ species Brevibacillus laterosporus root:Engineered:Lab Synthesis:Genetic cross 1 species Brevibacillus reuszeri root:Environmental:Terrestrial:Soil 1.0 species Brevibacillus reuszeri root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 species Cellulosibacter alkalithermophilus root:Environmental:Terrestrial:Soil 1.0 -species Kouleothrix lapsinanis root:Environmental:Terrestrial:Soil 1.0 -order Isosphaerales root:Environmental:Terrestrial:Soil 2.0 +order Isosphaerales root:Environmental:Terrestrial:Soil 3.0 order Isosphaerales root:Environmental:Terrestrial:Deep subsurface 1.0 +order Nakamurellales root:Environmental:Terrestrial:Soil 1.0 +species Aneurinibacillus migulanus root:Environmental:Terrestrial:Soil 1.0 +species Kouleothrix lapsinanis root:Environmental:Terrestrial:Soil 1.0 species Dechloromonas tenuis root:Environmental:Terrestrial:Soil 2.0 species Dechloromonas tenuis root:Engineered:Wastewater:Industrial wastewater 1.0 species Dechloromonas tenuis root:Engineered:Bioreactor:Continuous culture 1.0 @@ -69950,6 +71710,7 @@ species Legionella lovleyi root:Environmental:Terrestrial:Soil 1.0 family Lactariidae root:Environmental:Terrestrial:Soil 1.0 species Bacillus drentensis root:Environmental:Terrestrial:Soil 1.0 species Streptomyces sp. NRRL F-6677 root:Environmental:Terrestrial:Soil 1.0 +species Streptomyces sp. NRRL F-6677 root:Environmental:Aquatic:Marine:Sediment 1.0 species Acinetobacter jeonii root:Environmental:Terrestrial:Soil 1.0 species Gracilibacter neonatale root:Environmental:Terrestrial:Soil 1.0 species Bryobacter mazei root:Environmental:Terrestrial:Soil 1.0 @@ -70081,8 +71842,8 @@ species Bacillus flexus root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacillus flexus root:Environmental:Aquatic:Thermal springs:Sediment 1.0 species Lysinibacillus stellifer root:Environmental:Terrestrial:Soil 1.0 species Segetibacter arvensicola root:Environmental:Terrestrial:Soil 1.0 -species Segetibacter arvensicola root:Host-associated:Plants:Root 1.0 species Segetibacter arvensicola root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Segetibacter arvensicola root:Host-associated:Plants:Root 1.0 species Segetibacter arvensicola root:Host-associated:Plants:Rhizome 1.0 species Paenibacillus stellifer root:Environmental:Terrestrial:Soil 1.0 species Flavobacterium toevensis root:Environmental:Terrestrial:Soil 1.0 @@ -70124,8 +71885,8 @@ species Actinoplanes mucilaginosa root:Environmental:Terrestrial:Soil 1.0 species Kaistobacter mucilaginosa root:Environmental:Terrestrial:Soil 1.0 species Ardenscatena ferruginea root:Environmental:Terrestrial:Soil 1.0 genus CandidatusEntotheonella root:Environmental:Terrestrial:Soil 1.0 -genus CandidatusEntotheonella root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus CandidatusEntotheonella root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus CandidatusEntotheonella root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species CandidatusEntotheonella cellulosum root:Environmental:Terrestrial:Soil 1.0 species CandidatusEntotheonella cellulosum root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Anaerolinea arvensicola root:Environmental:Terrestrial:Soil 1.0 @@ -70306,7 +72067,6 @@ species Beijerinckia biprosthecium root:Environmental:Terrestrial:Soil 1.0 species Beijerinckia biprosthecium root:Environmental:Terrestrial:Soil:Crop:Agricultural land 1.0 species Segetibacter xinjiangensis root:Environmental:Terrestrial:Soil 1.0 species Pasture soil clone HPS-64 root:Environmental:Terrestrial:Soil 1.0 -order Coniochaetales root:Environmental:Terrestrial:Soil 1.0 species Serratia fonticola root:Environmental:Terrestrial:Soil 1.0 species Serratia fonticola root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 species Serratia sp. DD3 root:Environmental:Terrestrial:Soil 1.0 @@ -70326,6 +72086,7 @@ species actinobacterium enrichment culture clone AP-FeEnrich2 root:Environmental species Hyphomicrobium sp. 16-60 root:Environmental:Terrestrial:Soil 1.0 species Tissierella Soehngenia difficile root:Environmental:Terrestrial:Soil 1.0 genus Sulfuricaulis root:Environmental:Terrestrial:Soil 1.0 +genus Sulfuricaulis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Actinoplanes friuliensis root:Environmental:Terrestrial:Soil 1.0 species Desulfuromonas sp. DDH964 root:Environmental:Terrestrial:Soil 1.0 species Terrimonas multivorum root:Environmental:Terrestrial:Soil 1.0 @@ -70484,7 +72245,7 @@ species bacterium YC-ZSS-LKJ113 root:Environmental:Aquatic:Marine:Sediment 1.0 genus Desulfuribacillus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Lokiarchaeum root:Environmental:Aquatic:Marine:Sediment 3.0 genus Rubeoparvulum root:Environmental:Aquatic:Marine:Sediment 1.0 -species Lokiarchaeum sp. GC14 75 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Lokiarchaeum sp. GC14 75 root:Environmental:Aquatic:Marine:Sediment 4.0 species Hadesarchaea archaeon YNP 45 root:Environmental:Aquatic:Marine:Sediment 1.0 species Desulfuribacillus alkaliarsenatis root:Environmental:Aquatic:Marine:Sediment 1.0 species Rubeoparvulum massiliense root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70493,7 +72254,7 @@ species Timonella senegalensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Coxiella sp. DG 40 root:Environmental:Aquatic:Marine:Sediment 5.0 species Coxiella sp. DG 40 root:Engineered:Bioreactor:Continuous culture 1.0 species Calditrichaeota bacterium AABM5.125.24 root:Environmental:Aquatic:Marine:Sediment 2.0 -species Latescibacteria bacterium SCGC AAA257-K07 root:Environmental:Aquatic:Marine:Sediment 4.0 +species Latescibacteria bacterium SCGC AAA257-K07 root:Environmental:Aquatic:Marine:Sediment 5.0 species iron-reducing enrichment clone Cl-W1 root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacteroidetes bacterium FH4 root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium enrichment culture clone R4-81B root:Environmental:Aquatic:Marine:Sediment 4.0 @@ -70505,7 +72266,7 @@ species Parcubacteria group bacterium GW2011 GWD2 42 14 root:Environmental:Aquat class Thermoanaerobaculia root:Environmental:Aquatic:Marine:Sediment 1.0 order Thermoanaerobaculales root:Environmental:Aquatic:Marine:Sediment 1.0 family Thermoanaerobaculaceae root:Environmental:Aquatic:Marine:Sediment 1.0 -species Aerophobetes bacterium SCGC AAA255-F10 root:Environmental:Aquatic:Marine:Sediment 2.0 +species Aerophobetes bacterium SCGC AAA255-F10 root:Environmental:Aquatic:Marine:Sediment 4.0 genus Anabaena root:Environmental:Aquatic:Marine:Sediment 1.0 species Bosmina sp. 1 BMR-2008 root:Environmental:Aquatic:Marine:Sediment 1.0 species Candidatus Bathyarchaeota archaeon TCS64 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70529,9 +72290,9 @@ species Sulfurovum riftiae root:Environmental:Aquatic:Marine:Sediment 2.0 species Sulfurovum riftiae root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Endozoicomonas sp. KJ13 root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium enrichment culture clone 71 root:Environmental:Aquatic:Marine:Sediment 1.0 +species bacterium enrichment culture clone 71 root:Engineered:Lab enrichment 1.0 species bacterium enrichment culture clone 71 root:Environmental:Aquatic:Marine:Coastal 1.0 species bacterium enrichment culture clone 71 root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -species bacterium enrichment culture clone 71 root:Engineered:Lab enrichment 1.0 species Coxiella endosymbiont of Ornithodoros kairouanensis root:Environmental:Aquatic:Marine:Sediment 1.0 family Anaplasmataceae root:Environmental:Aquatic:Marine:Sediment 1.0 family Anaplasmataceae root:Environmental:Aquatic:Freshwater 1.0 @@ -70544,7 +72305,7 @@ genus Wolbachia root:Environmental:Aquatic:Freshwater 1.0 genus Wolbachia root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Wolbachia root:Engineered:Lab enrichment:Defined media 1.0 genus Wolbachia root:Environmental:Terrestrial:Deep subsurface 1.0 -genus Wolbachia root:Host-associated:Insecta:Digestive system 1.0 +genus Wolbachia root:Host-associated:Insecta:Digestive system 2.0 genus Wolbachia root:Host-associated:Insecta 2.0 genus Clostridiisalibacter root:Environmental:Aquatic:Marine:Sediment 1.0 genus Clostridiisalibacter root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -70582,22 +72343,14 @@ genus Oregodasys root:Environmental:Aquatic:Marine:Sediment 1.0 genus Monotoplana root:Environmental:Aquatic:Marine:Sediment 1.0 species Paralia sulcata root:Environmental:Aquatic:Marine:Sediment 1.0 species Paralia sulcata root:Host-associated:Algae:Brown Algae 1.0 -species Protoperidinium leonis root:Environmental:Aquatic:Marine:Sediment 2.0 species Notomastus latericeus root:Environmental:Aquatic:Marine:Sediment 1.0 species Notomastus latericeus root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Copepoda environmental sample root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Pelagibius root:Environmental:Aquatic:Marine:Sediment 3.0 -genus Pelagibius root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 -genus Pelagibius root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 -genus Pelagibius root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 -genus Pelagibius root:Host-associated:Cnidaria 1.0 -genus Pelagibius root:Host-associated:Annelida:Digestive system 1.0 species Laonice sp. SLM-2008 root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacteroidetes bacterium O-014 root:Environmental:Aquatic:Marine:Sediment 2.0 species bacterial endosymbiont of Idas sp. root:Environmental:Aquatic:Marine:Sediment 2.0 species bacterial endosymbiont of Idas sp. root:Environmental:Aquatic:Marine:Cold seeps 4.0 species bacterial endosymbiont of Idas sp. root:Environmental:Aquatic:Marine:Oil seeps 1.0 -genus Ammoniphilus root:Environmental:Aquatic:Marine:Sediment 1.0 species Thermoplasmatales archaeon Gpl root:Environmental:Aquatic:Marine:Sediment 3.0 species Thermoplasmatales archaeon Gpl root:Host-associated:Porifera 3.0 order Methanopyrales root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70663,7 +72416,7 @@ species Pullenia subcarinata root:Environmental:Aquatic:Marine:Sediment 2.0 species Pullenia subcarinata root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Streptochilus globigerus root:Environmental:Aquatic:Marine:Sediment 1.0 species Ammonia sp. JP-2007 root:Environmental:Aquatic:Marine:Sediment 1.0 -class Hadesarchaea root:Environmental:Aquatic:Marine:Sediment 1.0 +class Hadesarchaea root:Environmental:Aquatic:Marine:Sediment 2.0 class Hadesarchaea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Hadesarchaea archaeon YNP N21 root:Environmental:Aquatic:Marine:Sediment 1.0 species Hadesarchaea archaeon YNP N21 root:Environmental:Aquatic:Marine:Cold seeps 1.0 @@ -70696,10 +72449,6 @@ species Nematonereis unicornis root:Environmental:Aquatic:Marine:Sediment 1.0 species Leptocythere lacertosa root:Environmental:Aquatic:Marine:Sediment 1.0 species Cilionema hawaiiensis root:Environmental:Aquatic:Marine:Sediment 2.0 species Chaetopterus cf. luteus KJO-2005 root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Methyloprofundus root:Environmental:Aquatic:Marine:Sediment 7.0 -genus Methyloprofundus root:Environmental:Aquatic:Sediment 1.0 -genus Methyloprofundus root:Environmental:Aquatic:Marine:Cold seeps 1.0 -genus Methyloprofundus root:Environmental:Aquatic:Marine:Cold seeps:Sediment 1.0 genus Thermodesulfitimonas root:Environmental:Aquatic:Marine:Sediment 1.0 species saltmarsh clone LCP-84 root:Environmental:Aquatic:Marine:Sediment 1.0 species saltmarsh clone LCP-84 root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -70743,6 +72492,7 @@ species Xenotrichula cf. intermedia TK-2012 root:Environmental:Aquatic:Marine:Se family Culicidae root:Environmental:Aquatic:Marine:Sediment 1.0 genus Anopheles root:Environmental:Aquatic:Marine:Sediment 1.0 species Photobacterium sp. J11 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Photobacterium sp. J11 root:Host-associated:Fish:Digestive system 1.0 species bacterium YC-ZSS-LKJ154 root:Environmental:Aquatic:Marine:Sediment 2.0 species Sediminispirochaeta bajacaliforniensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Pelolinea submarina root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70780,12 +72530,22 @@ species bacterium enrichment culture clone PKWE30-19 root:Environmental:Aquatic: species Oligobrachia haakonmosbiensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Anaeromicrobium sediminis root:Environmental:Aquatic:Marine:Sediment 1.0 species Ornithinibacillus sp. XJSL10-7 root:Environmental:Aquatic:Marine:Sediment 2.0 +phylum Endomyxa root:Environmental:Aquatic:Marine:Sediment 1.0 +class Ascetosporea root:Environmental:Aquatic:Marine:Sediment 1.0 +order Haplosporida root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Cephalothrix root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Myriochele root:Environmental:Aquatic:Marine:Sediment 1.0 +species Myriochele sp. BC-2003 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Anobothrus gracilis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Gyptis golikovi root:Environmental:Aquatic:Marine:Sediment 1.0 +species Haplosporidian parasite of Pandalus platyceros root:Environmental:Aquatic:Marine:Sediment 3.0 family Rhizopodaceae root:Environmental:Aquatic:Marine:Sediment 1.0 +family Rhizopodaceae root:Engineered:Lab enrichment 1.0 genus Monosiga root:Environmental:Aquatic:Marine:Sediment 1.0 genus Rhizopus root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Rhizopus root:Engineered:Lab enrichment 1.0 genus Rhizopus root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 genus Ancyromonas root:Environmental:Aquatic:Marine:Sediment 1.0 -species Massisteria sp. diva root:Environmental:Aquatic:Marine:Sediment 1.0 species Salpingoeca kvevrii root:Environmental:Aquatic:Marine:Sediment 1.0 species Salpingoeca kvevrii root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Amastigomonas bermudensis root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70794,8 +72554,6 @@ species Iasis cylindrica root:Environmental:Aquatic:Marine:Intertidal zone:Coral species Clytia linearis root:Environmental:Aquatic:Marine:Sediment 1.0 species Tetrapyle octacantha root:Environmental:Aquatic:Marine:Sediment 1.0 class RB25 root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Congregibacter root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Congregibacter root:Host-associated:Invertebrates 1.0 species T78 maritimus root:Environmental:Aquatic:Marine:Sediment 1.0 species Methanolobus symbiosum root:Environmental:Aquatic:Marine:Sediment 1.0 species Salinisphaera fragi root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70848,7 +72606,6 @@ genus Desmoscolex root:Environmental:Aquatic:Marine:Sediment 2.0 genus Halalaimus root:Environmental:Aquatic:Marine:Sediment 3.0 genus Perkinsus root:Environmental:Aquatic:Marine:Sediment 1.0 genus Desmolaimus root:Environmental:Aquatic:Marine:Sediment 2.0 -species Haplosporidian parasite of Pandalus platyceros root:Environmental:Aquatic:Marine:Sediment 2.0 species Metschnikowia sp. JJW-2009a root:Environmental:Aquatic:Marine:Sediment 2.0 species Theristus sp. 1268 root:Environmental:Aquatic:Marine:Sediment 1.0 species Desmoscolex sp. ITDL-2011 root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -70894,10 +72651,6 @@ genus Tropicimonas root:Environmental:Aquatic:Marine:Sediment 1.0 species Hyphomicrobium sp. WG6 root:Environmental:Aquatic:Marine:Sediment 1.0 species Sulfitobacter sp. SK038 root:Environmental:Aquatic:Marine:Sediment 1.0 species SAR86 cluster bacterium BACL1 MAG-120820-bin45 root:Environmental:Aquatic:Marine:Sediment 1.0 -species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Sediment 1.0 -species Sneathiella glossodoripedis root:Engineered:Wastewater:Industrial wastewater 1.0 -species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Brackish 1.0 -species Sneathiella glossodoripedis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 2.0 genus Nesterenkonia root:Environmental:Aquatic:Marine:Sediment 1.0 genus Nesterenkonia root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Atribacteria bacterium JGI 0000079-L04 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -70971,13 +72724,14 @@ species Methylotenera versatilis root:Host-associated:Fish:Skin 1.0 species Pedobacter bambusae root:Environmental:Aquatic:Marine:Sediment 1.0 species Paracoccus gahaiensis root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium enrichment culture clone 46 root:Environmental:Aquatic:Marine:Sediment 2.0 +phylum Candidatus Aerophobetes root:Environmental:Aquatic:Marine:Sediment 3.0 genus Denitrovibrio root:Environmental:Aquatic:Marine:Sediment 1.0 species Desulfocella sp. DSM 2056 root:Environmental:Aquatic:Marine:Sediment 1.0 species Clostridium sp. AN-AS3B root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacteroidetes bacterium GWF2 33 38 root:Environmental:Aquatic:Marine:Sediment 1.0 -species methanotrophic bacterial endosymbiont of Bathymodiolus sp. root:Environmental:Aquatic:Marine:Sediment 1.0 species Marinilabilia nitratireducens root:Environmental:Aquatic:Marine:Sediment 2.0 species Algoriella xinjiangensis root:Environmental:Aquatic:Marine:Sediment 1.0 +species Algoriella xinjiangensis root:Engineered:Wastewater:Water and sludge 1.0 species Algoriella xinjiangensis root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Bacillus pumilus root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus pumilus root:Host-associated:Plants:Root 1.0 @@ -70993,17 +72747,10 @@ species Sulfurospirillum cryaerophilus root:Environmental:Aquatic:Marine:Sedimen species Sulfurospirillum cryaerophilus root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Sulfurospirillum cryaerophilus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Sulfurospirillum cryaerophilus root:Engineered:Biotransformation 1.0 -order Kordiimonadales root:Environmental:Aquatic:Marine:Sediment 2.0 -order Kordiimonadales root:Environmental:Aquatic:Marine:Brackish 1.0 -order Kordiimonadales root:Host-associated:Fish:Digestive system:Intestine 1.0 -order Kordiimonadales root:Host-associated:Cnidaria 1.0 -family Kordiimonadaceae root:Environmental:Aquatic:Marine:Sediment 2.0 -family Kordiimonadaceae root:Environmental:Aquatic:Marine:Brackish 1.0 genus Fulvivirga root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Fulvivirga root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species endosymbiont of Pogonophora sp. JT-1 root:Environmental:Aquatic:Marine:Sediment 2.0 species Olavius crassitunicatus gamma-proteobacterial endosymbiont root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Arenibacter root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Arenibacter root:Engineered:Solid waste:Composting 1.0 order Peniculida root:Environmental:Aquatic:Marine:Sediment 1.0 order Peniculida root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 family Monodopsidaceae root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -71093,7 +72840,6 @@ species Penicilliopsis clavariiformis root:Environmental:Aquatic:Marine:Sediment species Pseudotulostoma volvatum root:Environmental:Aquatic:Marine:Sediment 1.0 species Pseudotulostoma volvatum root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Mangrovibacterium diazotrophicum root:Environmental:Aquatic:Marine:Sediment 1.0 -phylum Candidatus Aerophobetes root:Environmental:Aquatic:Marine:Sediment 2.0 phylum Candidatus Azambacteria root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Candidatus Azambacteria root:Environmental:Aquatic:Marine:Brackish 1.0 genus Aciduliprofundum root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71110,11 +72856,6 @@ species Malonomonas rubra root:Environmental:Aquatic:Marine:Sediment 1.0 species Thermococcus sp. PK root:Environmental:Aquatic:Marine:Sediment 1.0 genus Aliidiomarina root:Environmental:Aquatic:Marine:Sediment 1.0 genus Aliidiomarina root:Environmental:Aquatic:Marine:Coastal 1.0 -genus Tetragenococcus root:Environmental:Aquatic:Marine:Sediment 1.0 -genus Tetragenococcus root:Engineered:Food production:Fermented seafood 1.0 -genus Tetragenococcus root:Environmental:Terrestrial:Soil:Crop 1.0 -genus Tetragenococcus root:Host-associated:Birds:Digestive system 1.0 -genus Tetragenococcus root:Engineered:Food production:Fermented vegetables 3.0 species low G+C Gram-positive bacterium HTA1422 root:Environmental:Aquatic:Marine:Sediment 1.0 species Acidovorax sp. XJ-L63 root:Environmental:Aquatic:Marine:Sediment 1.0 species Camelina sativa root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71131,6 +72872,10 @@ species Methylobacter marinus root:Environmental:Aquatic:Marine:Sediment 1.0 species Chlorotetraedron incus root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium enrichment culture clone B145(2011) root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium enrichment culture clone B145(2011) root:Environmental:Aquatic:Freshwater:Lotic 1.0 +species Candidatus Aenigmarchaeota archaeon JGI 0000106-F11 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Candidatus Heimdallarchaeota archaeon AB 125 root:Environmental:Aquatic:Marine:Sediment 1.0 +species Candidatus Heimdallarchaeota archaeon AB 125 root:Environmental:Aquatic:Marine:Cold seeps 1.0 +species Marinimicrobia bacterium 46 43 root:Environmental:Aquatic:Marine:Sediment 1.0 species Methanococcoides sp. MO-MCD root:Environmental:Aquatic:Marine:Sediment 1.0 species LCP-6 ruminantium root:Environmental:Aquatic:Marine:Sediment 1.0 species Rheinheimera hydrocarbonoclasticus root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71184,6 +72929,7 @@ genus Tracheloraphis root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 genus Halichondria root:Environmental:Aquatic:Marine:Sediment 1.0 genus Terpios root:Environmental:Aquatic:Marine:Sediment 1.0 genus Cladosporium root:Environmental:Aquatic:Marine:Sediment 1.0 +genus Cladosporium root:Engineered:Lab enrichment 1.0 species Suberites sp. RT-2017 root:Environmental:Aquatic:Marine:Sediment 1.0 species Acremonium sp. YK3 root:Environmental:Aquatic:Marine:Sediment 1.0 species Siboglinum fiordicum root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71233,7 +72979,6 @@ species Arachnomyces gracilis root:Environmental:Aquatic:Marine:Sediment 1.0 species Oulenziella bakeri root:Environmental:Aquatic:Marine:Sediment 1.0 species Orchestina sp. 399 root:Environmental:Aquatic:Marine:Sediment 1.0 species Achnanthidium daonense root:Environmental:Aquatic:Marine:Sediment 1.0 -species Tilletiopsis washingtonensis root:Environmental:Aquatic:Marine:Sediment 1.0 species Thiohalophilus thiocyanatoxydans root:Environmental:Aquatic:Marine:Sediment 1.0 species Klebsiella aerogenes root:Environmental:Aquatic:Marine:Sediment 1.0 species Klebsiella aerogenes root:Engineered:Lab Synthesis 1.0 @@ -71262,6 +73007,7 @@ species Geothermobacter sp. EPR-M root:Environmental:Aquatic:Marine:Sediment 1.0 species Geothermobacter sp. EPR-M root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Sporolactobacillus root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus megaterium root:Environmental:Aquatic:Marine:Sediment 1.0 +species Bacillus megaterium root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacillus sp. IARI-SL-28 root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus aryabhattai root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus sp. T35.17 root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71270,6 +73016,7 @@ species Halovulum dunhuangense root:Environmental:Aquatic:Marine:Volcanic 1.0 species Erythrobacter sp. HME6857 root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus subtilis root:Environmental:Aquatic:Marine:Sediment 1.0 species Bacillus subtilis root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +species Bacillus subtilis root:Engineered:Built environment 1.0 species Bacillus sp. mixed culture X9-3F root:Environmental:Aquatic:Marine:Sediment 1.0 genus Candidatus Electrothrix root:Environmental:Aquatic:Marine:Sediment 1.0 species Candidatus Parabeggiatoa communis root:Environmental:Aquatic:Marine:Sediment 1.0 @@ -71280,12 +73027,12 @@ species Thiogranum longum root:Host-associated:Birds 1.0 species Parcubacteria group bacterium CG2 30 48 51 root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Candidatus Yanofskybacteria root:Environmental:Aquatic:Marine:Sediment 1.0 phylum Candidatus Yanofskybacteria root:Environmental:Aquatic:Marine:Brackish 1.0 +phylum Candidatus Yanofskybacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus Candidatus Aminicenans root:Environmental:Aquatic:Marine:Sediment 1.0 species Cobetia marina root:Environmental:Aquatic:Marine:Sediment 1.0 species Haliea atlantica root:Environmental:Aquatic:Marine:Sediment 1.0 species Salegentibacter echinorum root:Environmental:Aquatic:Marine:Sediment 1.0 species Salegentibacter echinorum root:Environmental:Aquatic:Sediment 1.0 -species Pelagibius litoralis root:Environmental:Aquatic:Marine:Sediment 1.0 species Tepidibacter sp. enrichment culture clone KME55-7 root:Environmental:Aquatic:Marine:Sediment 1.0 species Planctomycetes bacterium RIFCSPHIGHO2 02 FULL 50 42 root:Environmental:Aquatic:Marine:Sediment 1.0 species bacterium WH1-8 root:Environmental:Aquatic:Marine:Sediment 2.0 @@ -71421,6 +73168,7 @@ species Candidatus Odinarchaeota archaeon LCB 4 root:Environmental:Aquatic:Marin order Pleurocapsales root:Environmental:Aquatic:Marine:Sediment 1.0 order Pleurocapsales root:Environmental:Aquatic 1.0 order Pleurocapsales root:Host-associated:Algae:Red algae 5.0 +order Pleurocapsales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 order Pleurocapsales root:Environmental:Aquatic:Marine:Intertidal zone:Microbialites 1.0 species Nitrospira sp. enrichment culture clone Aa01 root:Environmental:Aquatic:Marine:Sediment 1.0 species Nitrospira sp. enrichment culture clone Aa01 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 @@ -71510,6 +73258,14 @@ species Enhydrobacter pyrinus root:Engineered:Modeled:Simulated communities (mic species Opitutus flexibilis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Geodermatophilus paludicola root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Saccharothrix paludicola root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Chromobacteriaceae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +family Chromobacteriaceae root:Environmental:Aquatic:Sediment 1.0 +family Chromobacteriaceae root:Environmental:Aquatic:Freshwater 2.0 +family Chromobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 +family Chromobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +family Chromobacteriaceae root:Engineered:Wastewater:Water and sludge 1.0 +species Nitrososphaera viennensis root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Aeromicrobium sp. Root472D3 root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Phyllobacterium pacificus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Phyllobacterium pacificus root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Chromobacterium aquatile root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 @@ -71526,6 +73282,22 @@ species Streptococcus manihotivorans root:Engineered:Modeled:Simulated communiti species Ralstonia paradoxus root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 species Ralstonia paradoxus root:Environmental:Terrestrial:Soil:Sand 1.0 species Alishewanella iguanae root:Engineered:Modeled:Simulated communities (microbial mixture) 1.0 +species Burkholderiales bacterium YL45 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Burkholderiales bacterium YL45 root:Host-associated:Mammals:Respiratory system 1.0 +species Burkholderiales bacterium YL45 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 +species Lactobacillus apodemi root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Lachnospiraceae bacterium DJF VP30 root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Selenomonas ruminantium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Selenomonas ruminantium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 7.0 +species Selenomonas ruminantium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 +species Selenomonas ruminantium root:Host-associated:Animal:Digestive system 1.0 +species Dechloromonas formigenes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Clostridium maritimum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Odoribacter massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 +species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 +species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +species Brachyspira viridiflava root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species candidate division TM6 bacterium GW2011 GWF2 30 66 root:Environmental:Aquatic:Freshwater:Lotic 1.0 species Hafniomonas laevis root:Environmental:Aquatic:Freshwater:Lotic 1.0 family Dunaliellaceae root:Environmental:Aquatic:Freshwater:Lotic 1.0 @@ -71585,6 +73357,7 @@ species Hydrocarboniphaga daqingensis root:Environmental:Aquatic:Freshwater:Drin species Desulforegula conservatrix root:Environmental:Aquatic:Sediment 1.0 species Desulforegula conservatrix root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Rhodocyclaceae bacterium enrichment culture clone MWE C12 root:Environmental:Aquatic:Sediment 2.0 +species Rhodocyclaceae bacterium enrichment culture clone MWE C12 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Rhodocyclaceae bacterium enrichment culture clone MWE C12 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 genus Brachymonas root:Environmental:Aquatic:Sediment 1.0 genus Malikia root:Environmental:Aquatic:Sediment 1.0 @@ -71601,10 +73374,6 @@ species Nocardiopsis sp. AE3 root:Environmental:Aquatic:Sediment 1.0 species Pelotomaculum sp. enrichment culture clone 35Fe82 root:Environmental:Aquatic:Sediment 1.0 species Pelotomaculum sp. enrichment culture clone 35Fe82 root:Environmental:Aquatic:Marine:Intertidal zone 1.0 species Pelotomaculum sp. enrichment culture clone 35Fe82 root:Engineered:Industrial production 1.0 -family Chromobacteriaceae root:Environmental:Aquatic:Sediment 1.0 -family Chromobacteriaceae root:Environmental:Aquatic:Freshwater 2.0 -family Chromobacteriaceae root:Engineered:Lab enrichment:Defined media 1.0 -family Chromobacteriaceae root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 genus Formivibrio root:Environmental:Aquatic:Sediment 1.0 species Formivibrio citricus root:Environmental:Aquatic:Sediment 1.0 species Sporomusaceae bacterium root:Environmental:Aquatic:Sediment 1.0 @@ -71617,6 +73386,7 @@ species Endothiovibrio diazotrophicus root:Environmental:Aquatic:Sediment 1.0 species Endothiovibrio diazotrophicus root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Olavius ilvae associated proteobacterium Delta 7 root:Environmental:Aquatic:Sediment 1.0 genus Methylocystis root:Environmental:Aquatic:Sediment 2.0 +genus Methylocystis root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 species Flavobacterium cauense root:Environmental:Aquatic:Sediment 1.0 species Flavobacterium fontis root:Environmental:Aquatic:Sediment 1.0 species Rhodobacter sp. Cr4-37 root:Environmental:Aquatic:Sediment 1.0 @@ -71711,7 +73481,6 @@ species Lysinibacillus sp. SG7 root:Environmental:Aquatic:Sediment 1.0 species Spirochaeta lutea root:Environmental:Aquatic:Sediment 1.0 species Flavobacteriaceae bacterium KHS1 root:Environmental:Aquatic:Sediment 1.0 species Flavobacteriaceae bacterium KHS1 root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 -genus Halobacillus root:Environmental:Aquatic:Sediment 1.0 species Arthrobacter sp. root:Environmental:Aquatic:Sediment 1.0 species Mucilaginibacter sp. KJ023 root:Environmental:Aquatic:Sediment 1.0 species Halobacillus massiliensis root:Environmental:Aquatic:Sediment 1.0 @@ -71724,6 +73493,7 @@ species Bacteroidetes bacterium GWF2 35 48 root:Environmental:Aquatic:Sediment 1 species Candidatus Anammoximicrobium moscowii root:Environmental:Aquatic:Sediment 1.0 genus Rubritepida root:Environmental:Aquatic:Sediment 1.0 species Minicystis rosea root:Environmental:Aquatic:Sediment 1.0 +species Minicystis rosea root:Host-associated:Plants:Rhizoplane:Soil 1.0 genus Subeucalanus root:Environmental:Aquatic 1.0 genus Subeucalanus root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 genus Pontellina root:Environmental:Aquatic 1.0 @@ -71831,6 +73601,38 @@ species delta proteobacterium K2-52 root:Environmental:Aquatic 1.0 species Desulfobulbus sp. IS6 root:Environmental:Aquatic 1.0 species Sulfurisoma sediminicola root:Environmental:Aquatic 1.0 species Sulfurisoma sediminicola root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 +species Lachnospiraceae bacterium AC3007 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Romboutsia sp. MT17 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Romboutsia sp. MT17 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Romboutsia sp. MT17 root:Host-associated:Animal:Digestive system 1.0 +species Romboutsia sp. MT17 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +species Methanobrevibacter millerae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Methanobrevibacter millerae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Butyrivibrio sp. AE2032 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Butyrivibrio sp. AE2032 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 +species Butyrivibrio sp. AE2032 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +species Lysinibacillus contaminans root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Populus trichocarpa (black cottonwood) root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Clostridiales bacterium CIEAF 021 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Lachnospiraceae bacterium DW44 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Odoribacter stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Midgut 2.0 +species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species rc4-4 torques root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus PW3 root:Host-associated:Mammals:Digestive system:Midgut 1.0 +genus PW3 root:Engineered:Biogas plant:Wet fermentation 1.0 +genus PW3 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 +species PW3 copri root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species PW3 copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 +species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 +species Turicibacter zeae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Turicibacter zeae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 +species Turicibacter zeae root:Engineered:Biogas plant 1.0 +species Lactobacillus otitis root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Lactobacillus otitis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 genus Ruegeria root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum:Wadden Sea-Germany 1.0 genus Ruegeria root:Host-associated 1.0 genus Ruegeria root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 @@ -71857,9 +73659,6 @@ class SC72 root:Engineered:Wastewater:Water and sludge 2.0 order WCHB1-15 root:Engineered:Biogas plant:Wet fermentation 1.0 order A-2AF root:Engineered:Biogas plant:Wet fermentation 1.0 order A-2AF root:Engineered:Wastewater:Water and sludge 2.0 -genus PW3 root:Engineered:Biogas plant:Wet fermentation 1.0 -genus PW3 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 -genus PW3 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Fimbriimonas longum root:Engineered:Biogas plant:Wet fermentation 1.0 species Fimbriimonas longum root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Fimbriimonas longum root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -71890,15 +73689,13 @@ species Mucilaginibacter sp. root:Environmental:Terrestrial:Soil:Tropical rainfo species Camellia sinensis var. sinensis root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Melissococcus plutonius root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 species Pseudomonas pacificensis root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 -species Pseudomonas pacificensis root:Engineered:Food production 1.0 species Pseudomonas pacificensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Pseudomonas pacificensis root:Engineered:Food production 1.0 species DA101 rhizophila root:Environmental:Terrestrial:Soil:Tropical rainforest 1.0 -genus Salinispira root:Host-associated:Porifera 1.0 genus Pseudovibrio root:Host-associated:Porifera 1.0 genus Pseudovibrio root:Environmental:Aquatic:Marine:Brackish 1.0 genus Pseudovibrio root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus Pseudovibrio root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 -species Salinispira pacifica root:Host-associated:Porifera 1.0 species Aureibacter tunicatorum root:Host-associated:Porifera 2.0 species Aureibacter tunicatorum root:Environmental:Aquatic:Marine:Coastal 1.0 species Aureibacter tunicatorum root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -71979,22 +73776,94 @@ species Hirschia maritima root:Host-associated:Porifera 1.0 species Flammeovirgaceae bacterium BBD 1991-12 root:Host-associated:Porifera 1.0 species Flammeovirgaceae bacterium BBD 1991-12 root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef 1.0 species Flammeovirgaceae bacterium BBD 1991-12 root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -species Methanobrevibacter sp. D5 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species bacterium NC2004 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 -species Selenomonas ruminantium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 6.0 -species Selenomonas ruminantium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 -species Selenomonas ruminantium root:Host-associated:Animal:Digestive system 1.0 -species Selenomonas ruminantium root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -species Methanobrevibacter millerae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Methanobrevibacter millerae root:Host-associated:Mammals:Digestive system:Midgut 1.0 +class Mucoromycetes root:Engineered:Lab enrichment 1.0 +family Cryptococcaceae root:Engineered:Lab enrichment 1.0 +family Cryptococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +family Sarocladiaceae root:Engineered:Lab enrichment 1.0 +genus Cryptococcus root:Engineered:Lab enrichment 1.0 +genus Cryptococcus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +genus Sarocladium root:Engineered:Lab enrichment 1.0 +species Cryptococcus neoformans root:Engineered:Lab enrichment 1.0 +species Cryptococcus neoformans root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 +species Rhizopus oryzae root:Engineered:Lab enrichment 1.0 +species Fusarium sp. Ecu311 root:Engineered:Lab enrichment 1.0 +species Rhodotorula dairenensis root:Engineered:Lab enrichment 1.0 +species Cladosporium herbarum root:Engineered:Lab enrichment 1.0 +species Candida tropicalis root:Engineered:Lab enrichment 1.0 +species Sarocladium strictum root:Engineered:Lab enrichment 1.0 +species Saccharomyces cerevisiae root:Engineered:Lab enrichment 1.0 +species Fusarium solani root:Engineered:Lab enrichment 1.0 +class Verruco-5 root:Engineered:Lab enrichment 1.0 class Verruco-5 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 9.0 class Verruco-5 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 8.0 class Verruco-5 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 class Verruco-5 root:Host-associated 2.0 -class Verruco-5 root:Engineered:Lab enrichment 1.0 class Verruco-5 root:Engineered:Modeled:Simulated communities (DNA mixture) 1.0 class Verruco-5 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 class Verruco-5 root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 +species Geothrix bradus root:Engineered:Lab enrichment 1.0 +species Paludibacter uniformis root:Engineered:Lab enrichment 1.0 +species Paludibacter uniformis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +phylum Candidatus Microgenomates root:Engineered:Lab enrichment 1.0 +genus Thermotalea root:Engineered:Lab enrichment 1.0 +species Thermotalea metallivorans root:Engineered:Lab enrichment 1.0 +species Sulfurimonas sp. AST-10 root:Engineered:Lab enrichment 1.0 +species Microgenomates bacterium SCGC AAA040-P11 root:Engineered:Lab enrichment 1.0 +species Pseudonocardia fascians root:Engineered:Lab enrichment 1.0 +species Pseudonocardia fascians root:Environmental:Terrestrial:Soil:Desert 1.0 +species Desulfovibrio butyrativorans root:Engineered:Lab enrichment 1.0 +species E6 acidaminiphila root:Engineered:Lab enrichment 1.0 +species E6 acidaminiphila root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 +species Syntrophomonas cinnamivorans root:Engineered:Lab enrichment 1.0 +species Syntrophomonas cinnamivorans root:Engineered:Bioreactor:Continuous culture 1.0 +species Treponema acidaminiphila root:Engineered:Lab enrichment 1.0 +species Desulfosarcina butyrativorans root:Engineered:Lab enrichment 1.0 +family Thiobacteraceae root:Engineered:Lab enrichment 1.0 +genus Wolinella root:Engineered:Lab enrichment 1.0 +genus Wolinella root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 +genus Wolinella root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +genus Wolinella root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +genus Wolinella root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 +species Uliginosibacterium marina root:Engineered:Lab enrichment 1.0 +species Sulfurospirillum michiganensis root:Engineered:Lab enrichment 1.0 +species Sulfurospirillum michiganensis root:Environmental:Terrestrial:Soil:Sand 1.0 +species Rhodocyclus marina root:Engineered:Lab enrichment 1.0 +species Desulfomicrobium marina root:Engineered:Lab enrichment 1.0 +species Azospira marina root:Engineered:Lab enrichment 1.0 +species Limnohabitans tropica root:Engineered:Lab enrichment 1.0 +species Wolinella succinogenes root:Engineered:Lab enrichment 1.0 +species Wolinella succinogenes root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 +species Wolinella succinogenes root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Wolinella succinogenes root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 +species Wolinella succinogenes root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 +species Desulfovibrio mexicanus root:Engineered:Lab enrichment 1.0 +species Desulfovibrio mexicanus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 +genus Labrys root:Engineered:Lab enrichment 1.0 +genus Labrys root:Environmental:Terrestrial:Soil:Wetlands 1.0 +genus Labrys root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +genus Labrys root:Host-associated:Insecta 1.0 +genus Labrys root:Host-associated:Fungi 1.0 +species Bartonella altamirensis root:Engineered:Lab enrichment 1.0 +species Thiofaba perlucida root:Engineered:Lab enrichment 2.0 +species Labrys leguminosarum root:Engineered:Lab enrichment 1.0 +species Pectinatus cerevisiiphilus root:Engineered:Lab enrichment 1.0 +species Methanospirillum psychrodurum root:Engineered:Lab enrichment 1.0 +species Methyloglobulus morosus root:Engineered:Lab enrichment 1.0 +genus Martelella root:Engineered:Lab enrichment 1.0 +species Acinetobacter rosorum root:Engineered:Lab enrichment 2.0 +species Acinetobacter rosorum root:Host-associated:Birds 1.0 +species Vibrio porphyrae root:Engineered:Lab enrichment 1.0 +species Roseiflexus multivorum root:Engineered:Lab enrichment 1.0 +species Microbacterium psychrophilum root:Engineered:Lab enrichment 1.0 +species Martelella altamirensis root:Engineered:Lab enrichment 1.0 +species Achromobacter alaskensis root:Engineered:Lab enrichment 1.0 +species Achromobacter alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Achromobacter alaskensis root:Host-associated:Human:Circulatory system 1.0 +species Microbacterium ginsengi root:Engineered:Lab enrichment 1.0 +species Microbacterium ginsengi root:Engineered:Solid waste:Composting:Grass 1.0 +species CandidatusProtochlamydia multivorum root:Engineered:Lab enrichment 1.0 +species Methanobrevibacter sp. D5 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species bacterium NC2004 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 3.0 order Z20 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family BS11 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 13.0 family BS11 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 @@ -72036,11 +73905,6 @@ species bacterium MB2026 root:Host-associated:Mammals:Digestive system:Stomach:R species Syntrophococcus sucromutans root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Slackia aerofaciens root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 species Slackia aerofaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Paludibacter uniformis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Paludibacter uniformis root:Engineered:Lab enrichment 1.0 -species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Pseudoramibacter Eubacterium transvaalensis root:Host-associated:Mammals:Digestive system:Midgut 2.0 species Sphaerochaeta metschnikovii root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Treponema metschnikovii root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Treponema metschnikovii root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -72056,8 +73920,6 @@ species Treponema flavefaciens root:Host-associated:Mammals:Digestive system:For genus Haemonchus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Spathidium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Haemonchus placei root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Butyrivibrio sp. AE2032 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 -species Butyrivibrio sp. AE2032 root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Methanobrevibacter ruminantium root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Methanobrevibacter olleyae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Pseudoramibacter Eubacterium neonatale root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -72066,6 +73928,7 @@ species Butyrivibrio proteoclasticus root:Host-associated:Mammals:Digestive syst species Pseudobutyrivibrio ruminis root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 species Pseudobutyrivibrio ruminis root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species methanogenic archaeon ISO4-H5 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species methanogenic archaeon ISO4-H5 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Patulibacter acnes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Prevotella casseliflavus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Succiniclasticum polytropa root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -72079,12 +73942,15 @@ species Desulfotomaculum torques root:Host-associated:Mammals:Digestive system:S species Gracilibacter zeae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species rumen bacterium YS3 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Prevotellaceae bacterium DJF CR25 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Prevotella bryantii root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Prevotella bryantii root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 species Prevotella bryantii root:Host-associated:Fish:Digestive system 1.0 species rumen bacterium RC-2 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Prevotella acnes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Atopobium acnes root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Clostridium reuteri root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Butyrivibrio hungatei root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Lachnospiraceae bacterium RM29 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Bacteroidales bacterium R61 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species bacterium VCD1001 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Campylobacter fetus root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Treponema sp. S root:Host-associated:Mammals:Digestive system:Stomach:Rumen 2.0 @@ -72095,6 +73961,7 @@ species Succiniclasticum ruminis root:Host-associated:Mammals:Digestive system:S genus Pseudobutyrivibrio root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Pseudobutyrivibrio root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Butyrivibrio sp. AE3003 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 +species Butyrivibrio sp. AE3003 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species Lactococcus cibaria root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 family Isotrichidae root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 genus Ophryoscolex root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 @@ -72104,7 +73971,6 @@ species bacterium AC2042 root:Host-associated:Mammals:Digestive system:Stomach:R genus Mitsuokella root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species bacterium enrichment culture clone R1-2 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species bacterium ND2006 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 -species Succinimonas amylolytica root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species bacterium AB2028 root:Host-associated:Mammals:Digestive system:Stomach:Rumen 1.0 species Gemmatimonas cocleatum root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Syntrophus flava root:Environmental:Terrestrial:Soil:Wetlands 1.0 @@ -72119,11 +73985,6 @@ species Desulfomonile paradoxus root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Clostridium pomorum root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Opitutus geniculata root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Beijerinckia hungatei root:Environmental:Terrestrial:Soil:Wetlands 1.0 -genus Labrys root:Environmental:Terrestrial:Soil:Wetlands 1.0 -genus Labrys root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Labrys root:Host-associated:Insecta 1.0 -genus Labrys root:Engineered:Lab enrichment 1.0 -genus Labrys root:Host-associated:Fungi 1.0 species Labrys acidophilus root:Environmental:Terrestrial:Soil:Wetlands 1.0 species Labrys acidophilus root:Environmental:Aquatic:Freshwater 1.0 species Pseudomonas hydrothermalis root:Environmental:Terrestrial:Soil:Wetlands 1.0 @@ -72217,7 +74078,6 @@ species Geobacter starrii root:Environmental:Terrestrial:Soil:Boreal forest 1.0 species Acidobacterium capsulatum root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Thermoplasmatales archaeon A-plasma root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Jiangella alba root:Environmental:Terrestrial:Soil:Grasslands 1.0 -species Methyloceanibacter marginalis root:Environmental:Terrestrial:Soil:Grasslands 1.0 order AK31 root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Peptoniphilus polytropa root:Environmental:Terrestrial:Soil:Grasslands 1.0 species Williamsia kroppenstedtii root:Environmental:Terrestrial:Soil:Grasslands 1.0 @@ -72292,12 +74152,125 @@ family Bovidae root:Host-associated:Mammals:Digestive system:Stomach 1.0 family Eimeriidae root:Host-associated:Mammals:Digestive system:Stomach 1.0 family Eimeriidae root:Host-associated:Birds:Digestive system:Digestive tube:Cecum 1.0 family Eimeriidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Brassicaceae root:Host-associated:Mammals:Digestive system:Stomach 1.0 genus Bos root:Host-associated:Mammals:Digestive system:Stomach 1.0 genus Austrofundulus root:Host-associated:Mammals:Digestive system:Stomach 1.0 species Bos indicus root:Host-associated:Mammals:Digestive system:Stomach 1.0 species Pichia kudriavzevii root:Host-associated:Mammals:Digestive system:Stomach 1.0 species Eimeria tenella root:Host-associated:Mammals:Digestive system:Stomach 1.0 +species Mycobacterium sp. 15.4 AW root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Georgenia thermotolerans root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Streptomyces noboritoensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Actinocorallia spatholoba root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species bacterium Ellin5129 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Mycobacterium saskatchewanense root:Host-associated:Plants:Rhizosphere:Soil 1.0 +order Gomphales root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Atheliaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Atheliaceae root:Host-associated:Plants:Root 1.0 +family Atheliaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +family Gomphaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family Hydnaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Ramaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Piloderma root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Piloderma root:Host-associated:Plants:Root 1.0 +genus Piloderma root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +genus Byssocorticium root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Hydnum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Piloderma sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Piloderma sp root:Host-associated:Plants:Root 1.0 +species Piloderma sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 +species Byssocorticium sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Geminibasidium sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Ramaria sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Ramaria formosa root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Gautieria sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Dokdonella viridiflava root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Clostridium maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Gemmatimonas maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Nitrospira maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Methylibium facilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Ochrobactrum pseudintermedium root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Paenochrobactrum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Paenochrobactrum glaciei root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Methanocella gargensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Anaerolinea multivorum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species ph2 difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species GOUTA19 difficile root:Host-associated:Plants:Rhizosphere:Soil 2.0 +family 0319-6G20 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Roseomonas marcusii root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Blastococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Bacillus aestuarii root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Terrabacter terrae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Terrabacter terrae root:Host-associated 1.0 +species Terrabacter terrae root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 +species Terrabacter terrae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Anoxybacillus sp. SCSIO 15096 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Lysobacter sp. YS-37 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Asaccharospora irregularis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Asaccharospora irregularis root:Host-associated:Mammals:Gastrointestinal tract 1.0 +species Asticcacaulis benevestitus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Terrabacter ginsenosidimutans root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Turicibacter coleohominis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Sinomonas root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sinomonas atrocyanea root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus AF12 root:Host-associated:Plants:Rhizosphere:Soil 2.0 +genus AF12 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +genus AF12 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Rheinheimera pylori root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species AF12 endodontalis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus YRC22 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus YRC22 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Leptotrichia difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Thiobacillus mixta root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Thiobacillus mixta root:Environmental:Aquatic:Freshwater 1.0 +species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 +species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +species YRC22 copri root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Leptospirillum somerae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Acidithiobacillus apodemus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Gemmata epidermidis root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Cohnella reuszeri root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Acidicaldus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus Acidicaldus root:Environmental:Terrestrial:Volcanic 1.0 +species Azospirillum sp. T2-YC6788 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species bacterium enrichment culture clone heteroB15 4W root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species bacterium enrichment culture clone auto142 4W root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species mixed culture bacterium J3-46 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species bacterium DEN D8 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Phenylobacterium difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 +family SHAS460 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus SGSH944 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +genus SGSH944 root:Environmental:Aquatic:Marine:Coastal 1.0 +species SGSH944 morganii root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Halorhodospira hydrophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sphingobium nitrogenifigens root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Leptotrichia saccharolyticus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Sediminibacterium lacunae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Steroidobacter alcaligenes root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Bacillus lacunae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Devosia pseudintermedium root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Devosia pseudintermedium root:Engineered:Solid waste:Composting 1.0 +species Finegoldia hungatei root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Patulibacter rubra root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Bacillus ferripilum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Turicibacter cibaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Fimbriimonas soli root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Anaeromyxobacter mexicanus root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Pelotomaculum aeronauticum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Tepidibacter aeronauticum root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species AF12 copri root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species AF12 copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Bacteroides rubrobrunea root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Nitrospina toluolica root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Gemmatimonas polytropa root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Roseomonas sphaeroides root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Methanobacterium SCA1170 root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Roseiflexus aerophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Roseiflexus aerophila root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Thermobaculum aerophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Steroidobacter shilonii root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Aliivibrio cholerae root:Host-associated:Plants:Rhizosphere:Soil 1.0 +species Peptoniphilus meridiei root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Bacteroides clarus root:Host-associated:Human:Digestive system 1.0 species Collinsella phocaeensis root:Host-associated:Human:Digestive system 1.0 species Collinsella phocaeensis root:Host-associated:Animal:Digestive system:Fecal 2.0 @@ -72351,11 +74324,6 @@ class OP11-4 root:Environmental:Aquatic:Freshwater 1.0 class OP11-4 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Blgi18 root:Environmental:Aquatic:Freshwater 1.0 order d153 root:Environmental:Aquatic:Freshwater 1.0 -class Heterotrichea root:Environmental:Aquatic:Freshwater 1.0 -class Heterotrichea root:Environmental:Aquatic:Marine:Oceanic:Abyssal plane 1.0 -class Heterotrichea root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -order Heterotrichida root:Environmental:Aquatic:Freshwater 1.0 -order Heterotrichida root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 order Rhizophlyctidales root:Environmental:Aquatic:Freshwater 1.0 order Amphifilida root:Environmental:Aquatic:Freshwater 1.0 family Stentoridae root:Environmental:Aquatic:Freshwater 1.0 @@ -72388,11 +74356,6 @@ species Candidatus Nucleicultrix amoebiphila root:Environmental:Aquatic:Freshwat species Candidatus Nucleicultrix amoebiphila root:Host-associated:Insecta:Digestive system 1.0 species Ferritrophicum radicicola root:Environmental:Aquatic:Freshwater 1.0 species Lautropia bryophila root:Environmental:Aquatic:Freshwater 1.0 -species Thiobacillus mixta root:Environmental:Aquatic:Freshwater 1.0 -species Thiobacillus mixta root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Thiobacillus mixta root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Polynucleobacter timonae root:Environmental:Aquatic:Freshwater 1.0 order Spirobacillales root:Environmental:Aquatic:Freshwater 1.0 order Spirobacillales root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 @@ -72422,6 +74385,11 @@ species Limnohabitans rubrum root:Environmental:Aquatic:Freshwater 1.0 species Hydrogenophaga rubrum root:Environmental:Aquatic:Freshwater 1.0 species Flavobacterium llatzerense root:Environmental:Aquatic:Freshwater 1.0 species Gemmatimonas obliquus root:Environmental:Aquatic:Freshwater 1.0 +phylum Tubulinea root:Environmental:Aquatic:Freshwater 1.0 +phylum Tubulinea root:Environmental:Terrestrial:Deep subsurface 1.0 +phylum Tubulinea root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +class Echinamoebida root:Environmental:Aquatic:Freshwater 1.0 +species Roseomonas stagni root:Environmental:Aquatic:Freshwater 1.0 species Algoriphagus boritolerans root:Environmental:Aquatic:Freshwater 1.0 species Algoriphagus boritolerans root:Environmental:Aquatic:Estuary 1.0 species Campylobacter adipica root:Environmental:Aquatic:Freshwater 1.0 @@ -72461,6 +74429,7 @@ species Nitrospina vacuolatus root:Environmental:Aquatic:Marine:Hydrothermal ven species Thermococcus zilligii root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 species Thermococcus zilligii root:Environmental:Aquatic:Marine:Hydrothermal vents:Microbial mats 1.0 phylum Candidatus Wolfebacteria root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 +phylum Candidatus Wolfebacteria root:Environmental:Aquatic:Freshwater:Groundwater 1.0 order Magnetococcales root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 order Magnetococcales root:Environmental:Aquatic:Marine:Hydrothermal vents:Diffuse flow 1.0 family Magnetococcaceae root:Environmental:Aquatic:Marine:Hydrothermal vents:Sediment 1.0 @@ -72515,6 +74484,7 @@ species Thermosediminibacter oceani root:Engineered:Modeled 1.0 genus Caldimonas root:Environmental:Aquatic:Thermal springs 1.0 genus Noviherbaspirillum root:Environmental:Aquatic:Thermal springs 1.0 genus Noviherbaspirillum root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 +genus Noviherbaspirillum root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Paenibacillus picturae root:Environmental:Aquatic:Thermal springs 1.0 species Paenibacillus picturae root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 species Lysinibacillus picturae root:Environmental:Aquatic:Thermal springs 1.0 @@ -72657,6 +74627,7 @@ species Photobacterium gaetbulicola root:Environmental:Aquatic:Marine:Intertidal genus Maritimibacter root:Environmental:Aquatic:Marine:Coastal 1.0 species Sphingomonas echinoides root:Environmental:Aquatic:Marine:Coastal 1.0 species Sphingomonas echinoides root:Environmental:Aquatic:Marine:Brackish 1.0 +species Sphingomonas echinoides root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Roseivirga massiliensis root:Environmental:Aquatic:Marine:Coastal 1.0 species Wandonia vermicola root:Environmental:Aquatic:Marine:Coastal 1.0 species Planctomyces LF1 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72700,7 +74671,6 @@ genus Oodinium root:Environmental:Aquatic:Marine:Coastal 1.0 species Thraustochytrium sp. HK10 root:Environmental:Aquatic:Marine:Coastal 1.0 genus Tateyamaria root:Environmental:Aquatic:Marine:Coastal 1.0 species Motiliproteus sediminis root:Environmental:Aquatic:Marine:Coastal 1.0 -order Copelata root:Environmental:Aquatic:Marine:Coastal 1.0 family Ochromonadaceae root:Environmental:Aquatic:Marine:Coastal 1.0 genus Melicertissa root:Environmental:Aquatic:Marine:Coastal 1.0 species Melicertissa sp. AGC-2001 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72722,8 +74692,6 @@ species Acinetobacter nosocomialis root:Environmental:Aquatic:Marine:Coastal 1.0 species Acinetobacter sp. ALBL 205 root:Environmental:Aquatic:Marine:Coastal 1.0 species Acinetobacter sp. ALBL 205 root:Engineered:Wastewater:Water and sludge 1.0 species Acinetobacter sp. ALBL 205 root:Environmental:Aquatic:Freshwater:Groundwater:Mine drainage 1.0 -genus SGSH944 root:Environmental:Aquatic:Marine:Coastal 1.0 -genus SGSH944 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Flavobacterium rubra root:Environmental:Aquatic:Marine:Coastal 1.0 species SGSH944 rubra root:Environmental:Aquatic:Marine:Coastal 1.0 genus Eucampia root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72770,6 +74738,7 @@ species vadinCA11 hamelinensis root:Environmental:Aquatic:Marine:Coastal 1.0 species Halococcus hamelinensis root:Environmental:Aquatic:Marine:Coastal 1.0 genus Guillardia root:Environmental:Aquatic:Marine:Coastal 1.0 species Marinagarivorans algicola root:Environmental:Aquatic:Marine:Coastal 1.0 +species Marinagarivorans algicola root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Magnetofaba australis root:Environmental:Aquatic:Marine:Coastal 1.0 species Tistrella mobilis root:Environmental:Aquatic:Marine:Coastal 1.0 species Tistrella mobilis root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 @@ -72783,6 +74752,7 @@ species Neorickettsia ruminantium root:Environmental:Aquatic:Marine:Coastal 1.0 species Neorickettsia ruminantium root:Environmental:Aquatic:Marine:Intertidal zone 1.0 species Sulcia muelleri root:Environmental:Aquatic:Marine:Coastal 1.0 species Rubritalea tangerina root:Environmental:Aquatic:Marine:Coastal 2.0 +species Rubritalea tangerina root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 genus CandidatusMagnetobacterium root:Environmental:Aquatic:Marine:Coastal 1.0 species Trichodesmium murrayii root:Environmental:Aquatic:Marine:Coastal 1.0 species CandidatusMagnetobacterium marina root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72800,8 +74770,6 @@ species Placuna placenta root:Environmental:Aquatic:Marine:Coastal 1.0 species Thraustochytrium kinnei root:Environmental:Aquatic:Marine:Coastal 1.0 species Halothrix ambigua root:Environmental:Aquatic:Marine:Coastal 1.0 species Massilia sp. Root351 root:Environmental:Aquatic:Marine:Coastal 1.0 -species Rhizobiales bacterium NRL2 root:Environmental:Aquatic:Marine:Coastal 1.0 -species Rhizobiales bacterium NRL2 root:Environmental:Aquatic:Marine:Brackish 2.0 genus Aureispira root:Environmental:Aquatic:Marine:Coastal 2.0 genus Aureispira root:Host-associated:Algae:Red algae 1.0 genus Aureispira root:Environmental:Aquatic:Marine:Pelagic 1.0 @@ -72812,6 +74780,7 @@ species Microbacteriaceae bacterium KACHI24 root:Environmental:Aquatic:Non-marin species Lepocinclis tripteris root:Environmental:Aquatic:Marine:Coastal 1.0 species Merismopedia glauca root:Environmental:Aquatic:Marine:Coastal 1.0 species Merismopedia glauca root:Environmental:Terrestrial:Soil:Desert 1.0 +species Merismopedia glauca root:Host-associated:Insecta 1.0 species Gemmatimonadetes bacterium WF4 root:Environmental:Aquatic:Marine:Coastal 1.0 genus Geminigera root:Environmental:Aquatic:Marine:Coastal 1.0 species Dinophyta sp. HG151 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72840,7 +74809,6 @@ species Lentibacter algarum root:Environmental:Aquatic:Marine:Coastal 1.0 species Sphingobacterium gobiense root:Environmental:Aquatic:Marine:Coastal 1.0 species bacterium WH8-7 root:Environmental:Aquatic:Marine:Coastal 1.0 species Bacteroidetes bacterium enrichment culture clone OCL P2D11 root:Environmental:Aquatic:Marine:Coastal 1.0 -species Pseudohongiella spirulinae root:Environmental:Aquatic:Marine:Coastal 1.0 species Aliidiomarina sp. root:Environmental:Aquatic:Marine:Coastal 1.0 species Ruegeria scottomollicae root:Environmental:Aquatic:Marine:Coastal 1.0 species Brumimicrobium sp. P99 root:Environmental:Aquatic:Marine:Coastal 1.0 @@ -72947,7 +74915,6 @@ genus Astomonema root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Caulleriella root:Environmental:Aquatic:Marine:Cold seeps 1.0 genus Mesorhynchus root:Environmental:Aquatic:Marine:Cold seeps 1.0 species Cytaeis sp. MAN-2015 root:Environmental:Aquatic:Marine:Cold seeps 1.0 -species Candidatus Heimdallarchaeota archaeon AB 125 root:Environmental:Aquatic:Marine:Cold seeps 1.0 species unclassified cirratulid root:Environmental:Aquatic:Marine:Cold seeps 1.0 order Cyrtolophosidida root:Engineered:Solid waste:Composting 3.0 family Platyophryidae root:Engineered:Solid waste:Composting 3.0 @@ -72982,7 +74949,6 @@ species Gemmata arboris root:Environmental:Aquatic:Freshwater:Wetlands:Bog 1.0 species B-42 debontii root:Engineered:Solid waste:Composting 1.0 species Cerasicoccus laidlawii root:Engineered:Solid waste:Composting 1.0 species CandidatusHepatoplasma laidlawii root:Engineered:Solid waste:Composting 1.0 -species Placocista sp. CC-Grouse Mountain root:Engineered:Solid waste:Composting 1.0 genus Galbibacter root:Engineered:Solid waste:Composting 1.0 genus Learamoeba root:Engineered:Solid waste:Composting 1.0 species Zootermopsis nevadensis root:Engineered:Solid waste:Composting 1.0 @@ -73008,7 +74974,6 @@ species Bacteroides coprosuis root:Engineered:Solid waste:Composting 1.0 species Novibacillus thermophilus root:Engineered:Solid waste:Composting 2.0 species Saccharomonospora viridis root:Engineered:Solid waste:Composting 1.0 species Bacteroidales bacterium KA00344 root:Engineered:Solid waste:Composting 1.0 -species Clostridium tetani root:Engineered:Solid waste:Composting 1.0 species Peptococcaceae bacterium 1109 root:Engineered:Solid waste:Composting 1.0 species Peptococcaceae bacterium 1109 root:Engineered:Biogas plant 1.0 species Kurthia sp. 11kri321 root:Engineered:Solid waste:Composting 2.0 @@ -73028,8 +74993,6 @@ species Pseudomonas thermotolerans root:Engineered:Solid waste:Composting 1.0 species Pseudomonas thermotolerans root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 species Cellvibrio gilardii root:Engineered:Solid waste:Composting 1.0 species Zoogloea gilardii root:Engineered:Solid waste:Composting 1.0 -species Devosia pseudintermedium root:Engineered:Solid waste:Composting 1.0 -species Devosia pseudintermedium root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Tepidimicrobium perfringens root:Engineered:Solid waste:Composting 1.0 species Pseudoxanthomonas taiwanensis root:Engineered:Solid waste:Composting 1.0 species Clostridium aureus root:Engineered:Solid waste:Composting 1.0 @@ -73151,8 +75114,6 @@ species Fulvimarina fascians root:Environmental:Terrestrial:Soil:Desert 1.0 species Phyllobacterium fascians root:Environmental:Terrestrial:Soil:Desert 1.0 species Afifella fascians root:Environmental:Terrestrial:Soil:Desert 1.0 species Devosia fascians root:Environmental:Terrestrial:Soil:Desert 1.0 -species Pseudonocardia fascians root:Environmental:Terrestrial:Soil:Desert 1.0 -species Pseudonocardia fascians root:Engineered:Lab enrichment 1.0 species Roseococcus ruber root:Environmental:Terrestrial:Soil:Desert 1.0 species Roseococcus ruber root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Sediment 1.0 genus Geosporobacter Thermotalea root:Environmental:Terrestrial:Soil:Desert 1.0 @@ -73229,21 +75190,14 @@ species Pelotomaculum propionicicum root:Engineered:Bioremediation:Persistent or species iron-reducing bacterium enrichment culture clone HN3 root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 species iron-reducing bacterium enrichment culture clone HN3 root:Engineered:Lab enrichment:Defined media 3.0 species bacterium enrichment culture clone DPF29 root:Engineered:Bioremediation:Persistent organic pollutants (POP) 1.0 -species Turicibacter zeae root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -species Turicibacter zeae root:Engineered:Biogas plant 1.0 -species Turicibacter zeae root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Oscillospira thermosuccinogenes root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Slackia lenta root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -species Anaerobiospirillum succiniciproducens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Anaerobiospirillum sp. 3J102 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 species Anaerotruncus colihominis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Bifidobacterium bispora root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Aquifex casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Caldicoprobacter sobrinus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Euzebya casseliflavus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Romboutsia sp. MT17 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Romboutsia sp. MT17 root:Host-associated:Animal:Digestive system 1.0 -species Romboutsia sp. MT17 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Clostridium sp. cTPY-17 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lachnospiraceae bacterium DW46 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Clostridiales bacterium CIEAF 012 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -73257,15 +75211,9 @@ species Clostridiales bacterium CIEAF 026 root:Host-associated:Mammals:Digestive species Clostridium sp. Culture-23 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Clostridium sp. Clone-47 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species butyrate-producing bacterium SM6/1 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus YRC22 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus YRC22 root:Host-associated:Plants:Rhizosphere:Soil 1.0 species 02d06 paramesenteroides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Sporanaerobacter wolfei root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species YRC22 stercorea root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 4.0 -species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Odoribacter massiliensis root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -species Odoribacter massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Bacteroides mucilaginosa root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Anaerofustis fallax root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Sutterella natatoria root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -73274,9 +75222,6 @@ species vadinCA11 thermautotrophicus root:Host-associated:Mammals:Digestive syst species MB11C04 metagenome root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Thiovirga hippei root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Dehalobacterium vaginalis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 3.0 -species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Midgut 1.0 -species Allobaculum flavefaciens root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 1.0 species Chryseobacterium massiliensis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Rikenella copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Gracilibacter minor root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -73291,21 +75236,12 @@ species Sinorhizobium leguminosarum root:Environmental:Aquatic:Non-marine Saline species Granulicatella grayi root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Pleomorphomonas denhamense root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Ectothiorhodospira paradoxus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species PW3 copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species PW3 copri root:Host-associated:Mammals:Digestive system:Midgut 1.0 -species Lactobacillus otitis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 2.0 -species Lactobacillus otitis root:Host-associated:Mammals:Digestive system:Midgut 1.0 species Halothiobacillus syntrophicum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Sulfurimonas pylori root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Plesiomonas shigelloides root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Heliorestis tyrobutyricum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Anaerovibrio longum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lachnobacterium sp. wal 14165 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus AF12 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -genus AF12 root:Host-associated:Plants:Rhizosphere:Soil 2.0 -genus AF12 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species AF12 copri root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 -species AF12 copri root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Glaciecola apodemus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Ureaplasma pirum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 genus Conchiformibius root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -73352,6 +75288,7 @@ species Succinivibrio D168 root:Host-associated 1.0 species Treponema spirochete root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Peptostreptococcus gnavus root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Lactobacillus animalis root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 +species Lactobacillus animalis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Lactobacillus sp. C4I5 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Clostridium sp. ID4 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species [Clostridium] cocleatum root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 @@ -73377,7 +75314,6 @@ species Dialister guilliermondii root:Host-associated:Mammals:Digestive system:L species Dysgonomonas sp. BGC7 root:Host-associated:Mammals:Digestive system:Large intestine:Fecal 1.0 species Capnocytophaga gingivalis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Capnocytophaga gingivalis root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 -species Prevotella pleuritidis root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Parvimonas micra root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Parvimonas micra root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Actinomyces israelii root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 @@ -73387,7 +75323,6 @@ species Streptococcus sp. feline oral taxon 345 root:Host-associated:Human:Diges species TM7 phylum sp. canine oral taxon 308 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Leptotrichia sp. PTE15 root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Treponema vincentii root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 -species Campylobacter showae root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Eikenella corrodens root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 species Eikenella corrodens root:Host-associated:Human:Digestive system:Oral:Supragingival plaque 1.0 species Johnsonella ignava root:Host-associated:Human:Digestive system:Oral:Subgingival plaque 1.0 @@ -73454,7 +75389,9 @@ species CF231 stercorea root:Host-associated:Mammals:Digestive system:Foregut:Ru species BF311 rimae root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 genus Epispathidium root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 genus Epispathidium root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -species Ruminobacter amylophilus root:Host-associated:Mammals:Digestive system:Foregut:Rumen 2.0 +genus Methanolacinia root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 +genus Methanolacinia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 +species Ruminobacter amylophilus root:Host-associated:Mammals:Digestive system:Foregut:Rumen 3.0 species Ruminobacter amylophilus root:Host-associated:Animal:Digestive system 1.0 species Lachnospiraceae bacterium AC2031 root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 species [Eubacterium] cellulosolvens root:Host-associated:Mammals:Digestive system:Foregut:Rumen 1.0 @@ -73476,6 +75413,12 @@ species Anaerovorax odorimutans root:Host-associated:Arthropoda:Digestive system species Anaerovorax odorimutans root:Host-associated:Insecta:Digestive system 1.0 species Promicromonosporaceae bacterium W15 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 species Microbacterium sp. Leaf288 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +genus Motilimonas root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +species Rhodococcus sp. ID1732 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +species Rhodovulum sp. SMB1 root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +species Rhodovulum sp. SMB1 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 +species Simiduia agarivorans root:Host-associated:Arthropoda:Digestive system:Gut 1.0 +species Simiduia agarivorans root:Environmental:Aquatic:Estuary 1.0 genus Propionispora root:Host-associated:Arthropoda:Digestive system:Gut 1.0 genus Propionispora root:Engineered:Wastewater:Nutrient removal:Dissolved organics (aerobic) 1.0 species Clostridium laterosporus root:Host-associated:Arthropoda:Digestive system:Gut 1.0 @@ -73582,21 +75525,11 @@ species Citrus maxima root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Citrus maxima root:Engineered:Food production:Fermented vegetables 1.0 species bacterium symbiont of Ifremeria nautilei root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species sulfur-oxidizing bacterium NDII1.1 root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -genus Wolinella root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 -genus Wolinella root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -genus Wolinella root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 -genus Wolinella root:Engineered:Lab enrichment 1.0 -genus Wolinella root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Methanopyrus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 genus Methanopyrus root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 genus Palaeococcus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Methanocaldococcus thermautotrophicus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species pMC1A4 thermautotrophicus root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 -species Wolinella succinogenes root:Environmental:Aquatic:Marine:Hydrothermal vents 2.0 -species Wolinella succinogenes root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Wolinella succinogenes root:Engineered:Modeled:Simulated communities (sequence read mixture) 1.0 -species Wolinella succinogenes root:Engineered:Lab enrichment 1.0 -species Wolinella succinogenes root:Environmental:Aquatic:Marine:Hydrothermal vents:Black smokers 1.0 species Methanopyrus kandleri root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Epipyxis sp. PR26KG root:Environmental:Aquatic:Marine:Hydrothermal vents 1.0 species Epipyxis sp. PR26KG root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 @@ -73627,8 +75560,6 @@ species Trichococcus boronitolerans root:Engineered:Lab enrichment:Defined media species Syntrophomonas meridiei root:Engineered:Lab enrichment:Defined media 1.0 species Parabacteroides equi root:Engineered:Lab enrichment:Defined media 1.0 species WCHB1-05 equi root:Engineered:Lab enrichment:Defined media 1.0 -species Microvirgula aerodenitrificans root:Engineered:Lab enrichment:Defined media 1.0 -species Microvirgula aerodenitrificans root:Host-associated:Insecta:Digestive system 1.0 species Blvii28 equi root:Engineered:Lab enrichment:Defined media 1.0 species Methanoculleus bryantii root:Engineered:Lab enrichment:Defined media 1.0 species Treponema amnigena root:Engineered:Lab enrichment:Defined media 1.0 @@ -73654,7 +75585,6 @@ species Bordetella sp. FB-8 root:Engineered:Lab enrichment:Defined media 1.0 species Dyella jiangningensis root:Engineered:Lab enrichment:Defined media 1.0 species Streptomyces decoyicus root:Host-associated:Plants:Root 1.0 species Oscillatoriales cyanobacterium KSU-AQIQ-8 root:Host-associated:Plants:Root 1.0 -species Pseudanabaena galeata root:Host-associated:Plants:Root 1.0 species bacterium MI-37 root:Host-associated:Plants:Root 1.0 species Bacteroidetes bacterium ArSB root:Host-associated:Plants:Root 1.0 species Streptomyces jumonjinensis root:Host-associated:Plants:Root 1.0 @@ -73671,6 +75601,24 @@ species Agrobacterium sp. EC2 3502 root:Host-associated:Plants:Root 1.0 species Shewanella cruenta root:Host-associated:Plants:Root 1.0 species Phenylobacterium rosea root:Host-associated:Plants:Root 1.0 species Weissella oryzae root:Host-associated:Plants:Root 1.0 +class Endogonomycetes root:Host-associated:Plants:Root 1.0 +class Cystobasidiomycetes root:Host-associated:Plants:Root 1.0 +class Cystobasidiomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 +order Stereopsidales root:Host-associated:Plants:Root 1.0 +order GS22 root:Host-associated:Plants:Root 1.0 +order Boletales root:Host-associated:Plants:Root 1.0 +order Boletales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 +order Boletales root:Environmental:Terrestrial:Soil:Clay 1.0 +order Boletales root:Host-associated:Fungi 1.0 +family Ceratobasidiaceae root:Host-associated:Plants:Root 1.0 +family Stereopsidaceae root:Host-associated:Plants:Root 1.0 +family Astraeaceae root:Host-associated:Plants:Root 1.0 +genus Clavulicium root:Host-associated:Plants:Root 1.0 +genus Astraeus root:Host-associated:Plants:Root 1.0 +species Ceratobasidiaceae sp root:Host-associated:Plants:Root 1.0 +species Tomentella sp root:Host-associated:Plants:Root 1.0 +species Sebacinaceae sp root:Host-associated:Plants:Root 1.0 +species Clavulicium delectabile root:Host-associated:Plants:Root 1.0 genus Vicinamibacter root:Host-associated:Plants:Root 1.0 family Juncaceae root:Host-associated:Plants:Root 1.0 genus Juncus root:Host-associated:Plants:Root 1.0 @@ -73680,7 +75628,6 @@ species Fusarium verticillioides root:Host-associated:Plants:Root 1.0 species Kaistia soli root:Host-associated:Plants:Root 1.0 species T78 rubrolavendulae root:Host-associated:Plants:Root 1.0 species Fulvimarina biprosthecium root:Host-associated:Plants:Root 1.0 -class Xylonomycetes root:Host-associated:Plants:Root 2.0 order Diaporthales root:Host-associated:Plants:Root 2.0 family Serendipitaceae root:Host-associated:Plants:Root 1.0 family Gigasporaceae root:Host-associated:Plants:Root 1.0 @@ -73780,7 +75727,6 @@ genus Gallorhynchus root:Environmental:Aquatic:Marine:Oil-contaminated sediment genus Procryptobia root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Lacticigenium root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 genus Loxocorniculum root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 -genus Condylostoma root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Gallorhynchus mediterraneus root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Condylostoma spatiosum root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 species Metachromadora sp. root:Environmental:Aquatic:Marine:Oil-contaminated sediment 1.0 @@ -73877,7 +75823,6 @@ species Cochlonema euryblastum root:Environmental:Terrestrial:Deep subsurface 1. species Cochlonema euryblastum root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Eocercomonas sp. HFCC 907 root:Environmental:Terrestrial:Deep subsurface 1.0 species Pseudoparamoeba microlepis root:Environmental:Terrestrial:Deep subsurface 1.0 -phylum Tubulinea root:Environmental:Terrestrial:Deep subsurface 1.0 class Entomophthoromycetes root:Environmental:Terrestrial:Deep subsurface 1.0 class Entomophthoromycetes root:Host-associated:Insecta 1.0 order Entomophthorales root:Environmental:Terrestrial:Deep subsurface 1.0 @@ -73889,7 +75834,6 @@ species Kurtzmanomyces tardus root:Environmental:Terrestrial:Deep subsurface 2.0 species Conidiobolus lamprauges root:Environmental:Terrestrial:Deep subsurface 1.0 species Oehserchestidae sp. ARP-2015 root:Environmental:Terrestrial:Deep subsurface 1.0 species Acidobacteria bacterium IGE-010 root:Environmental:Terrestrial:Deep subsurface 2.0 -phylum Discosea root:Environmental:Terrestrial:Deep subsurface 1.0 order Rhizochloridales root:Environmental:Terrestrial:Deep subsurface 1.0 family Myxochloridaceae root:Environmental:Terrestrial:Deep subsurface 1.0 genus Chlamydomyxa root:Environmental:Terrestrial:Deep subsurface 1.0 @@ -73932,11 +75876,8 @@ species Pseudothermotoga hypogea root:Environmental:Aquatic:Thermal springs:Hot species Pseudothermotoga hypogea root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Thermocrinis sp. GBS root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Thermocrinis sp. GBS root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline 1.0 -genus Caldanaerobacter root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Desulfonatronospira root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 genus Desulfonatronospira root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 -species Caldanaerobacter subterraneus root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 -species Caldanaerobacter subterraneus root:Engineered:Modeled 1.0 species Desulfurella amilsii root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Desulfonatronospira thiodismutans root:Environmental:Aquatic:Thermal springs:Hot (42-90C):Sediment 1.0 species Desulfonatronospira thiodismutans root:Engineered:Bioremediation:Hydrocarbon:Benzene:Bioreactor 1.0 @@ -74054,96 +75995,6 @@ species Nitrosococcus halophilus root:Environmental:Aquatic:Freshwater:Lentic:Se species Thioploca sp. 'Lake Tonle Sap' root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Lactobacillus pentosus root:Environmental:Aquatic:Freshwater:Lentic:Sediment 1.0 species Lactobacillus pentosus root:Engineered:Food production:Fermented vegetables 1.0 -order Gomphales root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family Atheliaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family Atheliaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -family Gomphaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family Hydnaceae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Ramaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Piloderma root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Piloderma root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Byssocorticium root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Hydnum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Piloderma sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Piloderma sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -species Byssocorticium sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Geminibasidium sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Ramaria sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Ramaria formosa root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Gautieria sp root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Dokdonella viridiflava root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Clostridium maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Gemmatimonas maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Nitrospira maitriensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Methylibium facilis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Ochrobactrum pseudintermedium root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Paenochrobactrum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Paenochrobactrum glaciei root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Methanocella gargensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Anaerolinea multivorum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species ph2 difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species GOUTA19 difficile root:Host-associated:Plants:Rhizosphere:Soil 2.0 -family 0319-6G20 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Roseomonas marcusii root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Blastococcus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Bacillus aestuarii root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Terrabacter terrae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Terrabacter terrae root:Host-associated 1.0 -species Terrabacter terrae root:Environmental:Aquatic:Freshwater:Ice:Glacier 1.0 -species Terrabacter terrae root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 -species Anoxybacillus sp. SCSIO 15096 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Lysobacter sp. YS-37 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Asaccharospora irregularis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Asaccharospora irregularis root:Host-associated:Mammals:Gastrointestinal tract 1.0 -species Asticcacaulis benevestitus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Terrabacter ginsenosidimutans root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Turicibacter coleohominis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Rheinheimera pylori root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species AF12 endodontalis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Leptotrichia difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species YRC22 copri root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Leptospirillum somerae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Acidithiobacillus apodemus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Gemmata epidermidis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Cohnella reuszeri root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Achromobacter alaskensis root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Achromobacter alaskensis root:Engineered:Lab enrichment 1.0 -species Achromobacter alaskensis root:Host-associated:Human:Circulatory system 1.0 -genus Acidicaldus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -genus Acidicaldus root:Environmental:Terrestrial:Volcanic 1.0 -species Azospirillum sp. T2-YC6788 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species bacterium enrichment culture clone heteroB15 4W root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species bacterium enrichment culture clone auto142 4W root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species mixed culture bacterium J3-46 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species bacterium DEN D8 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Phenylobacterium difficile root:Host-associated:Plants:Rhizosphere:Soil 1.0 -family SHAS460 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species SGSH944 morganii root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Halorhodospira hydrophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Sphingobium nitrogenifigens root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Leptotrichia saccharolyticus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Sediminibacterium lacunae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Steroidobacter alcaligenes root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Bacillus lacunae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Finegoldia hungatei root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Patulibacter rubra root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Bacillus ferripilum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Turicibacter cibaria root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Fimbriimonas soli root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Anaeromyxobacter mexicanus root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Pelotomaculum aeronauticum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Tepidibacter aeronauticum root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Bacteroides rubrobrunea root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Nitrospina toluolica root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Gemmatimonas polytropa root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Roseomonas sphaeroides root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Methanobacterium SCA1170 root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Roseiflexus aerophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Roseiflexus aerophila root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 -species Thermobaculum aerophila root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Steroidobacter shilonii root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Aliivibrio cholerae root:Host-associated:Plants:Rhizosphere:Soil 1.0 -species Peptoniphilus meridiei root:Host-associated:Plants:Rhizosphere:Soil 1.0 species Actinomyces denticolens root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Atopobium fossor root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Streptococcus sp. M-S-TSA 29 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 @@ -74159,8 +76010,9 @@ species Streptococcus criceti root:Host-associated:Mammals:Digestive system:Larg species Corynebacterium faecale root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Streptococcus sp. NK-2013-c root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Slackia vaginae root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Sporosarcina pasteurii root:Host-associated:Mammals:Digestive system:Large intestine 1.0 +species Enterococcus sp. PFC6 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Erysipelotrichaceae bacterium canine oral taxon 317 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 -species Peptococcus sp. canine oral taxon 334 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Anaerofustis vaginalis root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Ruminococcus gnavus root:Host-associated:Mammals:Digestive system:Large intestine 1.0 species Turicibacter sp. LA61 root:Host-associated:Mammals:Digestive system:Large intestine 1.0 @@ -74190,6 +76042,15 @@ species Enterococcus multivorum root:Engineered:Food production:Fermented seafoo species Lactobacillus multivorum root:Engineered:Food production:Fermented seafood 1.0 species Shewanella lividum root:Engineered:Food production:Fermented seafood 1.0 species Staphylococcus multivorum root:Engineered:Food production:Fermented seafood 1.0 +species Oceanotoga teriensis root:Engineered:Food production:Fermented seafood 1.0 +species Desulfovibrio capillatus root:Engineered:Food production:Fermented seafood 1.0 +species Halothiobacillus sp. NP36 root:Engineered:Food production:Fermented seafood 1.0 +species Desulfovibrio tunisiensis root:Engineered:Food production:Fermented seafood 1.0 +species Planococcaceae bacterium SN6 root:Engineered:Food production:Fermented seafood 1.0 +species Dethiosulfovibrio salsuginis root:Engineered:Food production:Fermented seafood 1.0 +species Halanaerobium sp. L21-Ace-D5 root:Engineered:Food production:Fermented seafood 1.0 +species Halanaerobium sp. L21-Ace-D5 root:Environmental:Terrestrial:Oil reservoir 1.0 +species Peptoniphilus stercorisuis root:Engineered:Food production:Fermented seafood 1.0 order Saprolegniales root:Environmental:Aquatic:Freshwater:Lentic 1.0 species Flavobacterium segetis root:Environmental:Aquatic:Freshwater:Lentic 1.0 species Leucobacter sp. G161 root:Environmental:Aquatic:Freshwater:Lentic 1.0 @@ -74244,7 +76105,6 @@ species Amphiporus sp. MWS-2001 root:Environmental:Aquatic:Estuary 1.0 species actinobacterium SCGC AAA028-A23 root:Environmental:Aquatic:Estuary 1.0 species Flavobacteriaceae bacterium CG1 02 35 72 root:Environmental:Aquatic:Estuary 1.0 species Pseudorhodobacter psychrotolerans root:Environmental:Aquatic:Estuary 2.0 -genus Croceicoccus root:Environmental:Aquatic:Estuary 1.0 species Corbicula japonica root:Environmental:Aquatic:Estuary 1.0 species Ichthyophthirius multifiliis root:Environmental:Aquatic:Estuary 1.0 species Aurelia sp. Incheon-2006 root:Environmental:Aquatic:Estuary 2.0 @@ -74271,7 +76131,6 @@ species Arcobacter mobilis root:Environmental:Aquatic:Estuary 1.0 species BD2-13 mobilis root:Environmental:Aquatic:Estuary 1.0 species Desulfuromusa kysingii root:Environmental:Aquatic:Estuary 1.0 species Rhodobacteraceae bacterium HTCC2083 root:Environmental:Aquatic:Estuary 1.0 -species Simiduia agarivorans root:Environmental:Aquatic:Estuary 1.0 species Moraxella lacunata root:Host-associated:Human:Skin:Naris 1.0 species Corynebacterium diphtheriae root:Host-associated:Human:Skin:Naris 1.0 species Moraxella canis root:Host-associated:Human:Skin:Naris 1.0 @@ -74304,15 +76163,11 @@ genus Parvibacter root:Host-associated:Animal:Digestive system 1.0 species beta proteobacterium HTCC525 root:Host-associated:Animal:Digestive system 1.0 species Firmicutes oral clone BX005 root:Host-associated:Animal:Digestive system 1.0 species Candidatus Arthromitus sp. SFB-turkey root:Host-associated:Animal:Digestive system 1.0 -family Amanitaceae root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Amphinema root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -genus Amanita root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 genus Tylospora root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Amphinema sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Lactarius rufus root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -species Clavulina sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Atheliaceae sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 -species Amanita sp root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Ramlibacter bryophila root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Labrys iners root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 species Pedosphaera bryophila root:Host-associated:Plants:Rhizosphere:Forest soil 1.0 @@ -74330,8 +76185,6 @@ species Ignavibacterium aerofaciens root:Environmental:Terrestrial:Soil:Oil-cont species Jeotgalicoccus safensis root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Corynebacterium SCA1145 root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 species Leptonema parasuis root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -order Boletales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 -order Boletales root:Environmental:Terrestrial:Soil:Clay 1.0 order Leptomyxida root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 order Leptomyxida root:Environmental:Terrestrial:Soil:Loam 1.0 order Apiales root:Environmental:Terrestrial:Soil:Oil-contaminated 1.0 @@ -74391,6 +76244,7 @@ genus Volucribacter root:Engineered:Wastewater:Industrial wastewater 1.0 species Volucribacter psittacicida root:Engineered:Wastewater:Industrial wastewater 1.0 species Leptospira primitia root:Engineered:Wastewater:Industrial wastewater 1.0 species Alicycliphilus denitrificans root:Engineered:Wastewater:Industrial wastewater 2.0 +species Alicycliphilus denitrificans root:Engineered:Wastewater:Water and sludge 1.0 species Roseomonas antarcticus root:Engineered:Wastewater:Industrial wastewater 1.0 species Mariprofundus parainfluenzae root:Engineered:Wastewater:Industrial wastewater 1.0 species Cloacibacterium vaginae root:Engineered:Wastewater:Industrial wastewater 1.0 @@ -74439,6 +76293,9 @@ species Streptococcus oeni root:Engineered:Modeled 1.0 species Thiofaba pylori root:Engineered:Modeled 1.0 family Blattabacteriaceae root:Host-associated:Insecta:Digestive system 2.0 species Blattabacterium cuenoti root:Host-associated:Insecta:Digestive system 1.0 +genus Sagittula root:Host-associated:Insecta:Digestive system 1.0 +species Wolbachia indicum root:Host-associated:Insecta:Digestive system 1.0 +species Acetobacter stellata root:Host-associated:Insecta:Digestive system 1.0 order Asparagales root:Host-associated:Insecta:Digestive system 1.0 genus Buttiauxella root:Host-associated:Insecta:Digestive system 1.0 species Erwinia sp. IMCC12905 root:Host-associated:Insecta:Digestive system 1.0 @@ -74548,6 +76405,7 @@ species Jannaschia aquimarina root:Host-associated 1.0 species Rhodospirillaceae bacterium PS4B-B496 root:Host-associated 1.0 species Flavobacteriaceae bacterium 04OKA-13-27 root:Host-associated 1.0 species Sediminitomix flava root:Host-associated 1.0 +species Sediminitomix flava root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Psychromonas viridans root:Host-associated 1.0 species Turicibacter lentimorbus root:Host-associated 1.0 species Shewanella viridans root:Host-associated 1.0 @@ -74588,15 +76446,15 @@ species bacterium WH8-10 root:Host-associated:Mollusca 1.0 species Ascidiimonas aurantiaca root:Host-associated:Mollusca 1.0 species Ascidiimonas aurantiaca root:Host-associated:Mollusca:Digestive system 1.0 species Spongiibacterium sp. HME9304 root:Host-associated:Mollusca 1.0 -species Dechloromonas formigenes root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -species Clostridium maritimum root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 -species Brachyspira viridiflava root:Host-associated:Mammals:Gastrointestinal tract:Intestine:Fecal 1.0 species Deefgea chitinilytica root:Host-associated:Fish:Digestive system 1.0 species Flavobacterium psychrophilum root:Host-associated:Fish:Digestive system 1.0 species Flavobacterium psychrophilum root:Environmental:Aquatic:Freshwater:Drinking water:Delivery networks 1.0 +species Flavobacterium psychrophilum root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Wohlfahrtiimonas chitiniclastica root:Host-associated:Fish:Digestive system 1.0 species Streptococcus henryi root:Host-associated:Fish:Digestive system 1.0 species Laurencia snackeyi root:Host-associated:Fish:Digestive system 1.0 +species Clostridium colicanis root:Host-associated:Fish:Digestive system 1.0 +species Vibrio ichthyoenteri root:Host-associated:Fish:Digestive system 1.0 species Alicyclobacillus fascians root:Environmental:Terrestrial:Soil:Mine 1.0 species WCHB1-05 fascians root:Environmental:Terrestrial:Soil:Mine 1.0 species Planctomyces haemolyticus root:Environmental:Terrestrial:Soil:Mine 1.0 @@ -74620,8 +76478,6 @@ species Azoarcus paradoxus root:Environmental:Terrestrial:Soil:Sand 1.0 species Z-35 paradoxus root:Environmental:Terrestrial:Soil:Sand 1.0 species Z-35 paradoxus root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Achromobacter yabuuchiae root:Environmental:Terrestrial:Soil:Sand 1.0 -species Sulfurospirillum michiganensis root:Environmental:Terrestrial:Soil:Sand 1.0 -species Sulfurospirillum michiganensis root:Engineered:Lab enrichment 1.0 species Desulfuromonas paradoxus root:Environmental:Terrestrial:Soil:Sand 1.0 genus Petrobacter root:Environmental:Terrestrial:Soil:Sand 1.0 genus A55 D21 root:Environmental:Terrestrial:Soil:Sand 1.0 @@ -74706,14 +76562,11 @@ species Erythrobacter longus root:Environmental:Aquatic:Marine:Brackish 1.0 species Erythrobacter sp. YT30 root:Environmental:Aquatic:Marine:Brackish 1.0 species Kordiimonas gwangyangensis root:Environmental:Aquatic:Marine:Brackish 2.0 species Kordiimonas gwangyangensis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated 1.0 -species Kordiimonas lacus root:Environmental:Aquatic:Marine:Brackish 1.0 -species Hyphomonas atlantica root:Environmental:Aquatic:Marine:Brackish 4.0 species Pedobacter agri root:Environmental:Aquatic:Marine:Brackish 5.0 species Shewanella haliotis root:Environmental:Aquatic:Marine:Brackish 1.0 species Rhizobium sp. Leaf321 root:Environmental:Aquatic:Marine:Brackish 3.0 species Massilia putida root:Environmental:Aquatic:Marine:Brackish 1.0 species Pseudarthrobacter equi root:Environmental:Aquatic:Marine:Brackish 2.0 -species Reichenbachiella faecimaris root:Environmental:Aquatic:Marine:Brackish 1.0 species Aureivirga marina root:Environmental:Aquatic:Marine:Brackish 1.0 species Lachnospiraceae bacterium oral taxon F15 root:Environmental:Aquatic:Marine:Brackish 1.0 species Bradyrhizobium sp. Leaf396 root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -74729,7 +76582,6 @@ species Rhizobiales bacterium HL-109 root:Environmental:Aquatic:Non-marine Salin species Microcella alkaliphila root:Environmental:Aquatic:Marine:Brackish 1.0 genus Candidatus Babela root:Environmental:Aquatic:Marine:Brackish 1.0 species Vibrio proteolyticus root:Environmental:Aquatic:Marine:Brackish 1.0 -species Caulobacter sp. JP68 root:Environmental:Aquatic:Marine:Brackish 1.0 species Nematoplana sp. Shelly River root:Environmental:Aquatic:Marine:Brackish 1.0 species Tenacibaculum sp. MAR 2009 124 root:Environmental:Aquatic:Marine:Brackish 1.0 genus Arthrospira root:Environmental:Aquatic:Marine:Brackish 1.0 @@ -74837,8 +76689,6 @@ species Syntrophobacter lovleyi root:Engineered:Bioreactor:Continuous culture 1. species Myxococcus lovleyi root:Engineered:Bioreactor:Continuous culture 1.0 species E6 fusca root:Engineered:Bioreactor:Continuous culture 1.0 species Paludibacter xylanolytica root:Engineered:Bioreactor:Continuous culture 1.0 -species Syntrophomonas cinnamivorans root:Engineered:Bioreactor:Continuous culture 1.0 -species Syntrophomonas cinnamivorans root:Engineered:Lab enrichment 1.0 genus Alkalibacter root:Engineered:Bioreactor:Continuous culture 1.0 genus Alkalibacter root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 genus Sulfophobococcus root:Engineered:Bioreactor:Continuous culture 1.0 @@ -74904,6 +76754,7 @@ species Synechococcus granulosum root:Environmental:Aquatic:Freshwater:Lotic:Low species Polynucleobacter tuberum root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Allochromatium warmingii root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Chromatiaceae bacterium MTPP2IF163 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 +species gamma proteobacterium HdN1 root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Methylibium henricii root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Caulobacter henricii root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 species Solibacillus muralis root:Environmental:Aquatic:Freshwater:Lotic:Low land river systems 1.0 @@ -75044,11 +76895,21 @@ species Methanosarcina aeolicus root:Environmental:Aquatic:Freshwater:Groundwate species Desulfotignum mobilis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Methanosaeta aeolicus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species SAGMEG-1 salinarum root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Nomurabacteria bacterium RIFCSPLOWO2 12 40 14 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Sungbacteria bacterium RIFCSPLOWO2 01 FULL 54 21 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Sungbacteria bacterium RIFCSPLOWO2 01 FULL 54 21 root:Engineered:Wastewater:Water and sludge 1.0 +species Candidatus Yonathbacteria bacterium RIFOXYC2 FULL 47 9 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Giovannonibacteria bacterium RIFCSPLOWO2 01 FULL 46 32 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2 01 FULL 33 9 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +species Candidatus Magasanikbacteria bacterium GW2011 GWA2 41 55 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Acinetobacter phosphatis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Rhodobacter euryhalinus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Candidatus Omnitrophus fodinae root:Environmental:Aquatic:Freshwater:Groundwater 2.0 species Sediminibacter furfurosus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Legionella spiritensis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Herminiimonas root:Environmental:Aquatic:Freshwater:Groundwater 1.0 +genus Herminiimonas root:Environmental:Aquatic:Freshwater:Ice 1.0 +species Herminiimonas sp. CN root:Environmental:Aquatic:Freshwater:Groundwater 1.0 genus ZA3312c root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Rhodovibrio litoralis root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species CandidatusScalindua somerae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 @@ -75060,7 +76921,6 @@ species Bacteroidetes bacterium GWE2 42 24 root:Environmental:Aquatic:Freshwater species Anaerocella delicata root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Quatrionicoccus sp. MOB7-1 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Syntrophobotulus glycolicus root:Environmental:Aquatic:Freshwater:Groundwater 1.0 -species Methylogaea oryzae root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Candidatus Peribacteria bacterium RIFCSPHIGHO2 02 FULL 53 20 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Parcubacteria group bacterium GW2011 GWC1 41 7 root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Parcubacteria group bacterium GW2011 GWC1 41 7 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -75088,7 +76948,6 @@ species Gallionella mixta root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Telluria mixta root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Janthinobacterium gilardii root:Environmental:Aquatic:Freshwater:Groundwater 1.0 species Janthinobacterium gilardii root:Environmental:Aquatic:Freshwater:Ice 1.0 -genus Methanolacinia root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Methanococcus sp. P2F9701a root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Methanococcus voltae root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 species Robiginitalea sp. ZH09 root:Environmental:Aquatic:Marine:Wetlands:Sediment 1.0 @@ -75137,6 +76996,7 @@ species Protula atypha root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Haliclona cinerea root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Loxosomella plakorticola root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Haliotis tuberculata root:Environmental:Aquatic:Marine:Marginal Sea 1.0 +genus Pseudobacteriovorax root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Haliotis diversicolor root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Astrosphaera hexagonalis root:Environmental:Aquatic:Marine:Marginal Sea 1.0 species Staurolithium sp. JD-2011 root:Environmental:Aquatic:Marine:Marginal Sea 1.0 @@ -75153,6 +77013,7 @@ species Lepidonotus sublevis root:Environmental:Aquatic:Marine:Pelagic 1.0 species Roseomonas gilardii root:Engineered:Wastewater:Water and sludge 1.0 species Sphingobacterium sp. PM2-P1-29 root:Engineered:Wastewater:Water and sludge 1.0 species Chryseobacterium balustinum root:Engineered:Wastewater:Water and sludge 1.0 +species Citrobacter freundii root:Engineered:Wastewater:Water and sludge 1.0 genus Natronincola Anaerovirgula root:Engineered:Wastewater:Water and sludge 1.0 species Marinobacter agaradhaerens root:Engineered:Wastewater:Water and sludge 1.0 species Natronincola Anaerovirgula agaradhaerens root:Engineered:Wastewater:Water and sludge 1.0 @@ -75183,6 +77044,7 @@ genus Thermithiobacillus root:Engineered:Wastewater:Water and sludge 1.0 species Dehalococcoides thermolimosa root:Engineered:Wastewater:Water and sludge 1.0 species Tolumonas taiwanensis root:Engineered:Wastewater:Water and sludge 1.0 species Thermithiobacillus tepidarius root:Engineered:Wastewater:Water and sludge 1.0 +species Pelodera punctata root:Engineered:Wastewater:Water and sludge 1.0 genus S1 root:Engineered:Wastewater:Water and sludge 3.0 genus S1 root:Engineered:Biogas plant 3.0 genus S1 root:Engineered:Biotransformation:Mixed alcohol bioreactor 1.0 @@ -75221,7 +77083,6 @@ order Asterales root:Engineered:Wastewater:Water and sludge 1.0 family Asteraceae root:Engineered:Wastewater:Water and sludge 1.0 family Gorgonocephalidae root:Engineered:Wastewater:Water and sludge 1.0 genus Gorgonocephalus root:Engineered:Wastewater:Water and sludge 1.0 -species Candidatus Sungbacteria bacterium RIFCSPLOWO2 01 FULL 54 21 root:Engineered:Wastewater:Water and sludge 1.0 species Gorgonocephalus pustulatum root:Engineered:Wastewater:Water and sludge 1.0 species Clostridium equi root:Engineered:Wastewater:Water and sludge 1.0 species Clostridium equi root:Engineered:Biogas plant 1.0 @@ -75243,6 +77104,40 @@ genus Aliikangiella root:Engineered:Lab enrichment:Defined media:Marine media 1. species Aristerostoma marinum root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species Fabomonas tropica root:Engineered:Lab enrichment:Defined media:Marine media 1.0 species mucus bacterium 111 root:Engineered:Lab enrichment:Defined media:Marine media 1.0 +family Endozoicomonadaceae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Clionaida root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +order Antipatharia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Spirastrellidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Schizopathidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Styela root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Amphimedon root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Styela plicata root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Orbicella franksi root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 +species Siphonodictyon siphonum root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Pithophoraceae root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 +family Neolectaceae root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 +genus Parougia root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +genus Aegagropila root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +genus Dorvillea root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +species Parougia eliasoni root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +species Aegagropila linnaei root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +species Dorvillea erucaeformis root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 +species Prasinococcus sp. CCMP1194 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Phaeocystidibacter marisrubri root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Spongitalea numazuensis root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Neolectomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +order Neolectales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Symbiodinium microadriaticum root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Candidatus Entotheonella root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Candidatus Chlorothrix root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +genus Candidatus Chlorothrix root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 +species Proceraea cornuta root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Poritidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Eimeria acervulina root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +species Synechococcus sp. RCC307 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +class Kickxellomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 +order Kickxellales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 +family Myidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 species Thiovirga syntrophicum root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Blautia saccharolyticum root:Host-associated:Human:Digestive system:Large intestine:Sigmoid colon 1.0 species Glaciecola chinensis root:Environmental:Aquatic:Marine:Intertidal zone 1.0 @@ -75342,6 +77237,7 @@ species Cerianthus filiformis root:Environmental:Aquatic:Marine:Oceanic:Benthic species Robiginitalea mesophilus root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 phylum Entorrhizomycota root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Gromochytriales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 +order Gromochytriales root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Holtermanniales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 order Trichosporonales root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 family Nucleariidae root:Environmental:Aquatic:Marine:Oceanic:Benthic 1.0 @@ -75370,44 +77266,10 @@ genus Filobacterium root:Host-associated:Reptile:Oral cavity 1.0 genus Filobacterium root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 species Mycoplasma fastidiosum root:Host-associated:Reptile:Oral cavity 1.0 species Mycoplasma cavipharyngis root:Host-associated:Reptile:Oral cavity 1.0 -species Bradyrhizobium sp. lebi-1 root:Host-associated:Reptile:Oral cavity 1.0 species Brevibacterium permense root:Host-associated:Reptile:Oral cavity 1.0 species Corticibacterium populi root:Host-associated:Reptile:Oral cavity 1.0 species Gottschalkia acidurici root:Host-associated:Reptile:Oral cavity 1.0 -order Clionaida root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -order Antipatharia root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Spirastrellidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Schizopathidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Styela root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Amphimedon root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Styela plicata root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Orbicella franksi root:Host-associated:Invertebrates:Cnidaria:Coral 7.0 -species Siphonodictyon siphonum root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Pithophoraceae root:Host-associated:Invertebrates:Cnidaria:Coral 5.0 -family Neolectaceae root:Host-associated:Invertebrates:Cnidaria:Coral 4.0 -genus Parougia root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -genus Aegagropila root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -genus Dorvillea root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -species Parougia eliasoni root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -species Aegagropila linnaei root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -species Dorvillea erucaeformis root:Host-associated:Invertebrates:Cnidaria:Coral 6.0 -species Prasinococcus sp. CCMP1194 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Phaeocystidibacter marisrubri root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Spongitalea numazuensis root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -class Neolectomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -order Neolectales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Symbiodinium microadriaticum root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Candidatus Entotheonella root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Candidatus Chlorothrix root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Candidatus Chlorothrix root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline 1.0 -species Proceraea cornuta root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Poritidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Eimeria acervulina root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -species Synechococcus sp. RCC307 root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -class Kickxellomycetes root:Host-associated:Invertebrates:Cnidaria:Coral 2.0 -order Kickxellales root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -family Myidae root:Host-associated:Invertebrates:Cnidaria:Coral 1.0 -genus Herminiimonas root:Environmental:Aquatic:Freshwater:Ice 1.0 +family Petrotogaceae root:Engineered:Lab enrichment:Defined media:Anaerobic media 1.0 species Herminiimonas ampelinus root:Environmental:Aquatic:Freshwater:Ice 1.0 species Flavobacterium tannerae root:Environmental:Aquatic:Freshwater:Ice 1.0 species Hymenobacter tannerae root:Environmental:Aquatic:Freshwater:Ice 1.0 @@ -75449,7 +77311,6 @@ species Coriobacteriaceae bacterium SNR48-44 root:Host-associated:Fish:Digestive species Lactobacillus selangorensis root:Host-associated:Fish:Digestive system:Intestine 1.0 species Glycine soja root:Host-associated:Fish:Digestive system:Intestine 1.0 phylum Kickxellomycota root:Host-associated:Fish:Digestive system:Intestine 1.0 -class Cystobasidiomycetes root:Host-associated:Fish:Digestive system:Intestine 1.0 order Leucosporidiales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Microstromatales root:Host-associated:Fish:Digestive system:Intestine 1.0 order Exobasidiales root:Host-associated:Fish:Digestive system:Intestine 1.0 @@ -75520,6 +77381,11 @@ species Riemerella meningoseptica root:Host-associated:Insecta 1.0 species Flaviaesturariibacter amylovorans root:Host-associated:Insecta 1.0 species Litoreibacter sp. HME8262 root:Host-associated:Insecta 1.0 species Lucinoma aequizonata gill symbiont root:Host-associated:Insecta 1.0 +family Thorselliaceae root:Host-associated:Insecta 1.0 +genus Thorsellia root:Host-associated:Insecta 1.0 +species Thorsellia anophelis root:Host-associated:Insecta 1.0 +species Anopheles atroparvus root:Host-associated:Insecta 1.0 +species Polynucleobacter acidiphobus root:Host-associated:Insecta 1.0 species Desulfovibrio litoralis root:Host-associated:Insecta 1.0 species Pristionchus fissidentatus root:Host-associated:Insecta 1.0 species Streptococcus plantarum root:Host-associated:Insecta 1.0 @@ -75543,6 +77409,8 @@ species Polaromonas sp. DAB 10Ecl root:Environmental:Aquatic:Freshwater:Ice:Glac species Ralstonia sp. 1-1 root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 species Chroococcidiopsis sp. 9E-07 root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 species Phormidesmis priestleyi root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +class Elardia root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 +order Euamoebida root:Environmental:Aquatic:Freshwater:Ice:Glacial lake 1.0 order Caliciales root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Apiosporaceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 family Peniophoraceae root:Host-associated:Plants:Phylloplane:Endophytes 1.0 @@ -75557,7 +77425,6 @@ species Corynebacterium frankenforstense root:Engineered:Built environment 1.0 species Microbacterium paludicola root:Engineered:Built environment 1.0 species Microbacterium paludicola root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Corynebacterium pyruviciproducens root:Engineered:Built environment 1.0 -family Piskurozymaceae root:Engineered:Built environment 1.0 species Rhodotorula mucilaginosa root:Engineered:Built environment 1.0 species Paenibacillus polymyxa root:Engineered:Built environment 2.0 species Paenibacillus polymyxa root:Engineered:Food production:Fermented vegetables 1.0 @@ -75589,6 +77456,12 @@ species Staphylococcus sp. Rai11 root:Host-associated:Human:Respiratory system:N species Gossypium hirsutum (cotton) root:Engineered:Built environment 1.0 species Derxia gummosa root:Engineered:Built environment 1.0 species Arthrobacter sp. MH4-1 root:Engineered:Built environment 1.0 +species Bacillus thuringiensis root:Engineered:Built environment 1.0 +species Bacillus thuringiensis root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 +species Bacillus licheniformis root:Engineered:Built environment 1.0 +species Bacillus andreesenii root:Engineered:Built environment 1.0 +species Bacillus sp. mixed culture X10-2F root:Engineered:Built environment 1.0 +species Bacillus sp. mixed culture X5-47 root:Engineered:Built environment 1.0 species Corynebacterium sp. NML 93-0481 root:Engineered:Built environment 1.0 species Lactobacillus oris root:Host-associated:Birds:Digestive system 1.0 species Lactobacillus oris root:Host-associated:Animal:Digestive system:Fecal 1.0 @@ -75597,41 +77470,6 @@ species Weingartia kargliana root:Host-associated:Birds:Digestive system 1.0 species Lactobacillus intermedius root:Host-associated:Birds:Digestive system 1.0 species bacterium ic1311 root:Host-associated:Birds:Digestive system 1.0 species Ruminococcaceae bacterium FB2012 root:Host-associated:Birds:Digestive system 1.0 -species Geothrix bradus root:Engineered:Lab enrichment 1.0 -phylum Candidatus Microgenomates root:Engineered:Lab enrichment 1.0 -genus Thermotalea root:Engineered:Lab enrichment 1.0 -species Thermotalea metallivorans root:Engineered:Lab enrichment 1.0 -species Sulfurimonas sp. AST-10 root:Engineered:Lab enrichment 1.0 -species Microgenomates bacterium SCGC AAA040-P11 root:Engineered:Lab enrichment 1.0 -species Desulfovibrio butyrativorans root:Engineered:Lab enrichment 1.0 -species E6 acidaminiphila root:Engineered:Lab enrichment 1.0 -species E6 acidaminiphila root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 -species Treponema acidaminiphila root:Engineered:Lab enrichment 1.0 -species Desulfosarcina butyrativorans root:Engineered:Lab enrichment 1.0 -family Thiobacteraceae root:Engineered:Lab enrichment 1.0 -species Uliginosibacterium marina root:Engineered:Lab enrichment 1.0 -species Rhodocyclus marina root:Engineered:Lab enrichment 1.0 -species Desulfomicrobium marina root:Engineered:Lab enrichment 1.0 -species Azospira marina root:Engineered:Lab enrichment 1.0 -species Limnohabitans tropica root:Engineered:Lab enrichment 1.0 -species Desulfovibrio mexicanus root:Engineered:Lab enrichment 1.0 -species Desulfovibrio mexicanus root:Engineered:Bioreactor:Continuous culture:Marine sediment inoculum 1.0 -species Bartonella altamirensis root:Engineered:Lab enrichment 1.0 -species Thiofaba perlucida root:Engineered:Lab enrichment 2.0 -species Labrys leguminosarum root:Engineered:Lab enrichment 1.0 -species Pectinatus cerevisiiphilus root:Engineered:Lab enrichment 1.0 -species Methanospirillum psychrodurum root:Engineered:Lab enrichment 1.0 -species Methyloglobulus morosus root:Engineered:Lab enrichment 1.0 -genus Martelella root:Engineered:Lab enrichment 1.0 -species Acinetobacter rosorum root:Engineered:Lab enrichment 2.0 -species Acinetobacter rosorum root:Host-associated:Birds 1.0 -species Vibrio porphyrae root:Engineered:Lab enrichment 1.0 -species Roseiflexus multivorum root:Engineered:Lab enrichment 1.0 -species Microbacterium psychrophilum root:Engineered:Lab enrichment 1.0 -species Martelella altamirensis root:Engineered:Lab enrichment 1.0 -species Microbacterium ginsengi root:Engineered:Lab enrichment 1.0 -species Microbacterium ginsengi root:Engineered:Solid waste:Composting:Grass 1.0 -species CandidatusProtochlamydia multivorum root:Engineered:Lab enrichment 1.0 genus Ginkgo root:Environmental:Terrestrial:Soil:Boreal forest 1.0 species Dechloromonas biloba root:Environmental:Terrestrial:Soil:Boreal forest 1.0 species Ginkgo biloba root:Environmental:Terrestrial:Soil:Boreal forest 1.0 @@ -75664,7 +77502,6 @@ species Shewanella humi root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 species Pseudomonas nematophila root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 species CandidatusHamiltonella cicadellinicola root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 species Trabulsiella symbiotica root:Host-associated:Plants:Rhizoplane:Endophytes 1.0 -species Rhodovulum sp. SMB1 root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Desulfocarbo indianensis root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 species Desulfocarbo indianensis root:Environmental:Terrestrial:Oil reservoir 1.0 genus Litoribrevibacter root:Environmental:Aquatic:Marine:Intertidal zone:Mangrove swamp 1.0 @@ -75837,7 +77674,6 @@ species Lactobacillus amylolyticus root:Engineered:Food production:Fermented veg species Pectinatus frisingensis root:Engineered:Food production:Fermented vegetables 1.0 species Lactobacillus collinoides root:Engineered:Food production:Fermented vegetables 1.0 species Candida versatilis root:Engineered:Food production:Fermented vegetables 1.0 -species Bacillus oleronius root:Engineered:Food production:Fermented vegetables 1.0 species Aneurinibacillus sp. XH2 root:Engineered:Food production:Fermented vegetables 1.0 species Lactobacillus rennini root:Engineered:Food production:Fermented vegetables 1.0 species Saccharopolyspora hirsuta root:Engineered:Food production:Fermented vegetables 1.0 @@ -75866,11 +77702,8 @@ species Nanohaloarchaea archaeon AB578-D14 root:Environmental:Aquatic:Non-marine species Haloquadratum walsbyi root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Haloquadratum sp. J07HQX50 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Halonotius sp. J07HN6 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -family Cryptococcaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -genus Cryptococcus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 genus Flexibacter root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Cryptococcus gattii VGI root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 -species Cryptococcus neoformans root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species Salinibacter sp. 2Mm3 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species bacterium YC-ZSS-LKJ145 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Salt crystallizer pond 1.0 species bacterium YC-ZSS-LKJ145 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -75925,7 +77758,6 @@ species chimeric sequence SJA-7 root:Environmental:Aquatic:Freshwater:Groundwate species Nocardioides sp. PD653 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Ancylobacter dichloromethanicus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Azorhizobium sp. SEMIA 6402 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 -genus Sulfurirhabdus root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Geobacter sp. M18 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species sulfate-reducing bacterium TRM1 root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 species Sulfurifustis variabilis root:Environmental:Aquatic:Freshwater:Groundwater:Contaminated 1.0 @@ -75963,8 +77795,6 @@ species Mannheimia sp. BNO311 root:Host-associated:Mammals:Respiratory system 1. species Mannheimia sp. BNO311 root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 3.0 species Ureaplasma diversum root:Host-associated:Mammals:Respiratory system 1.0 species Ureaplasma diversum root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 -species Burkholderiales bacterium YL45 root:Host-associated:Mammals:Respiratory system 1.0 -species Burkholderiales bacterium YL45 root:Host-associated:Mammals:Digestive system:Large intestine:Cecum 2.0 species Enterobacter sp. MGH 33 root:Host-associated:Mammals:Respiratory system 1.0 species Enterobacter sp. BIDMC 27 root:Host-associated:Mammals:Respiratory system 1.0 species Gorbachella massiliensis root:Host-associated:Mammals:Respiratory system 1.0 @@ -76028,8 +77858,6 @@ genus Natronorubrum root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hy species uncultured Dunaliella sp. root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Methylohalobius root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 species sulfur-oxidizing bacterium OBII5 root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -species Aestuariispira sp. root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 -species Aestuariispira sp. root:Environmental:Aquatic:Marine:Volcanic 1.0 family Egicoccaceae root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 genus Egicoccus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 species Halorhodospira halochloris root:Environmental:Aquatic:Non-marine Saline and Alkaline:Hypersaline:Sediment 1.0 @@ -76165,10 +77993,8 @@ species Radix auricularia root:Environmental:Aquatic:Freshwater:Groundwater:Acid species Athalamea environmental sample root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Synchytrium endobioticum root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 species Chrysochaete britannica root:Environmental:Aquatic:Freshwater:Groundwater:Acid Mine Drainage 1.0 -species Lysinibacillus contaminans root:Host-associated:Mammals:Digestive system:Midgut 1.0 -species Populus trichocarpa (black cottonwood) root:Host-associated:Mammals:Digestive system:Midgut 1.0 -species Odoribacter stercorea root:Host-associated:Mammals:Digestive system:Midgut 1.0 -species rc4-4 torques root:Host-associated:Mammals:Digestive system:Midgut 1.0 +species Thermasporomyces composti root:Host-associated:Plants:Rhizoplane:Soil 1.0 +species Flavobacterium sp. enrichment culture clone SA NR2 1 root:Host-associated:Plants:Rhizoplane:Soil 1.0 family Catenulidae root:Environmental:Aquatic:Freshwater:Storm water 1.0 genus Catenula root:Environmental:Aquatic:Freshwater:Storm water 1.0 genus Tylenchorhynchus root:Environmental:Aquatic:Freshwater:Storm water 1.0 @@ -76230,8 +78056,37 @@ species Natrialba magadii root:Environmental:Aquatic:Freshwater:Pond:Sediment 1. species bacterium ROME95Asa root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Paenibacillus sp. BAB-4183 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 species Geobacter sp. Ply1 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +genus Candidatus Anammoximicrobium root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Desulfobacca acetoxidans root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Noviherbaspirillum sp. Root189 root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Ramlibacter tataouinensis root:Environmental:Aquatic:Freshwater:Pond:Sediment 1.0 +species Ramlibacter tataouinensis root:Environmental:Terrestrial:Soil:Sand:Oil-contaminated 1.0 species Corynebacterium pseudogenitalium root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 species Streptomyces canus root:Host-associated:Human:Respiratory system:Nasopharyngeal:Nasal cavity 1.0 +phylum Marchantiophyta root:Host-associated:Fungi 1.0 +class Jungermanniopsida root:Host-associated:Fungi 1.0 +order Trebouxiales root:Host-associated:Fungi 1.0 +family Cladoniaceae root:Host-associated:Fungi 1.0 +family Trebouxiaceae root:Host-associated:Fungi 1.0 +family Sphaerobolaceae root:Host-associated:Fungi 1.0 +family Parmeliaceae root:Host-associated:Fungi 1.0 +family Suillaceae root:Host-associated:Fungi 1.0 +family Ptilidiaceae root:Host-associated:Fungi 1.0 +family Ostropomycetidae fam Incertae sedis root:Host-associated:Fungi 1.0 +genus Cladonia root:Host-associated:Fungi 1.0 +genus Asterochloris root:Host-associated:Fungi 1.0 +genus Sphaerobolus root:Host-associated:Fungi 1.0 +genus Hypogymnia root:Host-associated:Fungi 1.0 +genus Xenopolyscytalum root:Host-associated:Fungi 1.0 +genus Phaeopyxis root:Host-associated:Fungi 1.0 +species Cladonia rangiferina root:Host-associated:Fungi 1.0 +species Asterochloris sp root:Host-associated:Fungi 1.0 +species Coccomyxa sp root:Host-associated:Fungi 1.0 +species Sphaerobolus stellatus root:Host-associated:Fungi 1.0 +species Hypogymnia physodes root:Host-associated:Fungi 1.0 +species Hypogymnia tubulosa root:Host-associated:Fungi 1.0 +species Trebouxia sp root:Host-associated:Fungi 1.0 +species Chlorophyta sp root:Host-associated:Fungi 1.0 species bacterium 28W232 root:Host-associated:Fungi 1.0 species Nakamurella sp. S20-107 root:Host-associated:Fungi 1.0 species Pseudomonas lividum root:Engineered:Bioremediation 1.0 @@ -76270,6 +78125,8 @@ species Luteococcus japonicus root:Host-associated:Mammals:Digestive system:Oral species Kingella kingae root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 species Moraxella porci root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 species Corynebacterium testudinoris root:Host-associated:Mammals:Digestive system:Oral cavity:Buccal mucosa 1.0 +species Gemella morbillorum root:Host-associated:Arthropoda:Digestive system:Oral 1.0 +species Scardovia wiggsiae root:Host-associated:Arthropoda:Digestive system:Oral 1.0 species CandidatusMethanoregula gargensis root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 species Dehalogenimonas faecium root:Environmental:Terrestrial:Soil:Uranium contaminated 1.0 genus Roseibaca root:Environmental:Aquatic:Non-marine Saline and Alkaline:Alkaline:Microbial mats 1.0 @@ -76339,8 +78196,19 @@ species Acinetobacter sp. IMCC12751 root:Environmental:Terrestrial:Soil:Sand:Oil species Conchiformibius kuhniae root:Host-associated:Mammals:Skin 1.0 species Corynebacterium sp. canine oral taxon 423 root:Host-associated:Mammals:Skin 1.0 genus Leisingera root:Host-associated:Mammals:Skin 1.0 -species Clostridium septicum root:Host-associated:Mammals:Skin 1.0 species Lewinella aquimaris root:Host-associated:Mammals:Skin 1.0 +order Axinellida root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Craspedida root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +order Opiliones root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +family Agaricaceae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +family Raspailiidae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +family Stygnopsidae root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +genus Paramitraceras root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +genus Xanthomarina root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +species Arcobacter sp. LA11 root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +species Paramitraceras veracruz root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +species Sulfurospirillum arcachonense root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 +species Xanthomarina gelatinilytica root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum:Wadden Sea-Germany 1.0 genus Cronobacter root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 species Thiovirga benthica root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 species Lysinibacillus kuerlensis root:Host-associated:Plants:Rhizosphere:Epiphytes 1.0 @@ -76349,11 +78217,9 @@ species Citrobacter quercina root:Host-associated:Plants:Rhizosphere:Epiphytes 1 genus Flexistipes root:Environmental:Terrestrial:Oil reservoir 1.0 genus Thioalbus root:Environmental:Terrestrial:Oil reservoir 1.0 species Flexistipes sinusarabici root:Environmental:Terrestrial:Oil reservoir 1.0 -species Halanaerobium sp. L21-Ace-D5 root:Environmental:Terrestrial:Oil reservoir 1.0 species Halanaerobium salsuginis root:Environmental:Terrestrial:Oil reservoir 1.0 species Halanaerobiales bacterium Ag-C55 root:Environmental:Terrestrial:Oil reservoir 1.0 species Fuchsiella ferrireducens root:Environmental:Terrestrial:Oil reservoir 1.0 -species Limibacillus halophilus root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 species Kordiimonas sediminis root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated sediments 1.0 species Mycoplasma bovirhinis root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 2.0 species Enterobacter sp. W49 root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 @@ -76362,6 +78228,11 @@ species Sphingobacterium sp. YIM 101302 root:Host-associated:Mammals:Respiratory species bacterium QTYC46b root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 species Psychrobacter sp. 1501(2011) root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 species Brachybacterium muris root:Host-associated:Mammals:Respiratory system:Nasopharyngeal 1.0 +species Muribaculum intestinale root:Host-associated:Mammals:Digestive system:Foregut 1.0 +species Clostridium sp. Clone-44 root:Host-associated:Mammals:Digestive system:Foregut 1.0 +species Clostridium sp. Culture-27 root:Host-associated:Mammals:Digestive system:Foregut 1.0 +species Saccharicrinis fermentans root:Host-associated:Mammals:Digestive system:Foregut 1.0 +species Lachnospiraceae bacterium DW61 root:Host-associated:Mammals:Digestive system:Foregut 1.0 species bacterium UMB4B root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 species Bacillus atrophaeus root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 species Bacillus sp. EGY-SCP2 root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 @@ -76369,7 +78240,6 @@ species Bacillus sp. TA47 root:Environmental:Aquatic:Marine:Neritic zone:Sedimen species Bacillus sp. MSSRF 1 root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 species Bacillus sp. H-S1-2 root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 species Bacillus sp. DU155(2010) root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 -species Bacillus thuringiensis root:Environmental:Aquatic:Marine:Neritic zone:Sediment 1.0 species Thermogymnomonas larsenii root:Environmental:Terrestrial:Soil:Mine drainage 1.0 species FFCH10602 lausannensis root:Environmental:Terrestrial:Soil:Mine drainage 1.0 species Maricaulis leguminosarum root:Engineered:Bioreactor:Continuous culture:Marine intertidal flat sediment inoculum 1.0 @@ -76408,12 +78278,10 @@ species Spirochaeta retroflexus root:Environmental:Aquatic:Non-marine Saline and species Stenotrophomonas retroflexus root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 genus Fodinicurvata root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 species Salisaeta longa root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 -species Pseudohaliea rubra root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 species Insolitispirillum peregrinum root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline:Microbial mats 1.0 genus Suttonella root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Klebsiella liquefaciens root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Haemophilus pneumotropica root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 -species Prevotella buccae root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Saccharopolyspora lacisalsi root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Bacteroides sp. feline oral taxon 308 root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 species Bacillus sp. SIT16 root:Host-associated:Human:Respiratory system:Pulmonary system:Lung 1.0 @@ -76443,7 +78311,6 @@ species Shewanella perfringens root:Host-associated:Human:Circulatory system:Blo species Citrobacter perfringens root:Host-associated:Human:Circulatory system:Blood 1.0 species Klebsiella cloacae root:Host-associated:Human:Circulatory system:Blood 1.0 species CandidatusHamiltonella perfringens root:Host-associated:Human:Circulatory system:Blood 1.0 -genus Holdemania root:Host-associated:Human:Circulatory system:Blood 1.0 species Lactobacillus casei root:Host-associated:Human:Circulatory system:Blood 1.0 species Lactobacillus paracasei root:Host-associated:Human:Circulatory system:Blood 1.0 species Enterococcus sp. icri5 root:Host-associated:Human:Circulatory system:Blood 1.0 @@ -76554,6 +78421,10 @@ species Mycoplasma piscolens root:Host-associated:Human:Respiratory system:Pulmo species Thiofaba halophila root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 species Staphylococcus psychrophilus root:Host-associated:Human:Respiratory system:Pulmonary system 1.0 species Methylohalobius crimeensis root:Environmental:Aquatic:Marine:Wetlands 1.0 +order AKYG1722 root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Propionicimonas lentus root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Leptotrichia cylindroides root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 +species Sanguibacter rugosa root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 species Lautropia gyiorum root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 species Dokdonella citronellolis root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 species Steroidobacter citronellolis root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1.0 @@ -76635,6 +78506,12 @@ species Acidibacillus ferrooxidans root:Engineered:Wastewater:Industrial wastewa species Thiobacillus sp. ML2-16 root:Engineered:Wastewater:Industrial wastewater:Mine water 1.0 species Gemella elaeagnus root:Environmental:Terrestrial:Agricultural field 1.0 species Pediococcus cellicola root:Environmental:Terrestrial:Agricultural field 1.0 +family Salinivirgaceae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +species Fusobacterium sp. HMSC073F01 root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +species Blattabacterium sp. (Blattella germanica) root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +species Clostridia bacterium UC5.1-1E11 root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +species Dysgonomonas sp. HGC4 root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 +species Xenorhabdus doucetiae root:Host-associated:Arthropoda:Digestive system:Hindgut 1.0 species Cytophaga fermentans root:Engineered:Solid waste:Solid animal waste 1.0 species Methanosarcina formosanus root:Engineered:Solid waste:Solid animal waste 1.0 phylum MVS-104 root:Host-associated:Annelida 1.0 @@ -76646,10 +78523,6 @@ species Desulfococcus acnes root:Host-associated:Annelida 1.0 species Thiorhodococcus acnes root:Host-associated:Annelida 1.0 species Pseudomonas cloacae root:Host-associated:Annelida 1.0 species Desulfosarcina acnes root:Host-associated:Annelida 1.0 -order AKYG1722 root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 -species Propionicimonas lentus root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 -species Leptotrichia cylindroides root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 -species Sanguibacter rugosa root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 1.0 class OS-L root:Environmental:Aquatic:Marine:Oil field:bore hole 1.0 species Dysgonomonas casseliflavus root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 species Zhouia succinicans root:Engineered:Bioremediation:Terephthalate:Wastewater:Bioreactor 1.0 diff --git a/grimer/config.py b/grimer/config.py index 3f3d640..4455112 100644 --- a/grimer/config.py +++ b/grimer/config.py @@ -6,7 +6,7 @@ class Config: - version = "1.0.0-alpha1" + version = "1.0.0" default_rank_name = "default" output_plots = ["overview", "samples", "heatmap", "correlation"] @@ -25,16 +25,17 @@ def __new__(self, argv=None): main_group.add_argument('-c', '--config', type=str, help="Configuration file with definitions of references, controls and external tools.") output_group = parser.add_argument_group('output arguments') - output_group.add_argument('-g', '--mgnify', default=False, action='store_true', help="Use MGNify data") - output_group.add_argument('-d', '--decontam', default=False, action='store_true', help="Run DECONTAM") + output_group.add_argument('-g', '--mgnify', default=False, action='store_true', help="Plot MGnify chart") + output_group.add_argument('-d', '--decontam', default=False, action='store_true', help="Run and plot DECONTAM") output_group.add_argument('-l', '--title', type=str, default="", help="Title to display on the header of the report.") output_group.add_argument('-p', '--output-plots', nargs="*", type=str, default=Config.output_plots, help="Plots to generate. Default: " + ",".join(Config.output_plots), choices=Config.output_plots) output_group.add_argument('-o', '--output-html', type=str, default="output.html", help="File to output report. Default: output.html") output_group.add_argument('--full-offline', default=False, action='store_true', help="Embed javascript library in the output file. File will be around 1.5MB bigger but also work without internet connection. That way your report will live forever.") data_group = parser.add_argument_group('general data options') - data_group.add_argument('-f', '--level-separator', default=None, type=str, help="If provided, consider --input-table to be a hiearchical multi-level table where the observations headers are separated by the indicated separator characther (usually ';' or '|')") + data_group.add_argument('-f', '--level-separator', default=None, type=str, help="If provided, consider --input-table to be a hierarchical multi-level table where the observations headers are separated by the indicated separator characther (usually ';' or '|')") data_group.add_argument('-y', '--values', default=None, type=str, help="Force 'count' or 'normalized' data parsing. Empty to auto-detect.") + data_group.add_argument('-w', '--cumm-levels', default=False, action='store_true', help="Activate if input table has already cummulative values among levels.") data_group.add_argument('-s', '--transpose', default=False, action='store_true', help="Transpose --input-table (if samples are listed on columns and observations on rows)") data_group.add_argument('-u', '--unassigned-header', nargs="*", type=str, default=None, help="Define one or more header names containing unsassinged/unclassified counts.") data_group.add_argument('--obs-replace', nargs="*", type=str, default=[], help="Replace values on table observations labels/headers (support regex). Example: '_' ' ' will replace underscore with spaces, '^.+__' '' will remove the matching regex.") diff --git a/grimer/func.py b/grimer/func.py index 3738403..8fad16f 100644 --- a/grimer/func.py +++ b/grimer/func.py @@ -5,6 +5,7 @@ import subprocess import shlex import pandas as pd +from pandas.api.types import is_numeric_dtype import yaml #Internal @@ -77,7 +78,7 @@ def parse_table(args, tax): args.transpose = True # Read and return full table with separated total and unassigned counts (sharing same index) - table_df, total, unassigned = parse_input_file(args.input_file, args.unassigned_header, args.transpose, args.sample_replace) + table_df, total, unassigned = parse_input_file(args.input_file, args.unassigned_header, args.transpose, args.sample_replace, args.cumm_levels) if table_df.empty: raise Exception("Error parsing input file") @@ -102,7 +103,7 @@ def parse_table(args, tax): # Split table into ranks. Ranks are either in the headers in multi level tables or will be created for a one level table if args.level_separator: - ranked_tables, lineage = parse_multi_table(table_df, args.ranks, tax, args.level_separator, args.obs_replace) + ranked_tables, lineage = parse_multi_table(table_df, args.ranks, tax, args.level_separator, args.obs_replace, args.cumm_levels) else: ranked_tables, lineage = parse_single_table(table_df, args.ranks, tax, Config.default_rank_name) @@ -140,32 +141,102 @@ def parse_table(args, tax): return table -def parse_metadata(args, table): +def parse_metadata(args, samples): metadata = None + + # Parse metadata as DataFrame (md) if args.metadata_file: - metadata = Metadata(metadata_file=args.metadata_file, samples=table.samples.to_list()) + # Parse table as dataframe + md = pd.read_table(args.metadata_file, sep='\t', header=0, skiprows=0, index_col=0, dtype={0: str}) elif args.input_file.endswith(".biom"): try: biom_in = biom.load_table(args.input_file) if biom_in.metadata() is not None: - metadata = Metadata(metadata_table=biom_in.metadata_to_dataframe(axis="sample"), samples=table.samples.to_list()) + md = biom_in.metadata_to_dataframe(axis="sample") except: print_log("Error parsing metadata from BIOM file, skipping") return None - if metadata.data.empty: + if md.empty: + print_log("No valid metadata, skipping") + return None + + # Enforce string index + md.index = md.index.astype('str') + + # Return type of columns, remove metadata row if present from metadata + md_types = define_metadata_types(md) + + # types defined on file + if str(md.index[0]).startswith("#"): + # Drop row with types from main data + md.drop(md_types.name, inplace=True) + # Enforce column type on dataframe + md[md_types[md_types == "categorical"].index] = md[md_types[md_types == "categorical"].index].astype(str) + md[md_types[md_types == "numeric"].index] = md[md_types[md_types == "numeric"].index].apply(pd.to_numeric) + + # Convert datatypes to adequate numeric values (int, float) + md = md.convert_dtypes(infer_objects=False, convert_string=False, convert_boolean=False) + # Re-convert everything to object to standardize (int64 NA is not seriazable on bokeh) + md = md.astype("object") + + # Remove empty fields + null_cols = md.isna().all(axis=0) + if any(null_cols): + md = md.loc[:, ~null_cols] + md_types = md_types[~null_cols] + print_log(str(sum(null_cols)) + " metadata fields removed without valid values") + + # Convert NaN on categorical to "" + md[md_types[md_types == "categorical"].index] = md[md_types[md_types == "categorical"].index].fillna('') + # Convert boolean from categorical to String + mask = md[md_types[md_types == "categorical"].index].applymap(type) != bool + md[md_types[md_types == "categorical"].index] = md[md_types[md_types == "categorical"].index].where(mask, md[md_types[md_types == "categorical"].index].replace({True: 'True', False: 'False'})) + + # Remove names + md.index.names = [None] + md_types.name = None + + # sort and filter by given samples + md = md.reindex(samples) + + # Check if matched metadata and samples + null_rows = md.isna().all(axis=1) + if any(null_rows): + # Do not remove, just inform user + #md = md.loc[~null_rows, :] + print_log(str(sum(null_rows)) + " samples without valid metadata") + + if md.empty or sum(null_rows) == md.shape[0]: print_log("No valid metadata, skipping") return None + metadata = Metadata(md, md_types) print_log("Samples: " + str(metadata.data.shape[0])) print_log("Numeric Fields: " + str(metadata.get_data("numeric").shape[1])) print_log("Categorical Fields: " + str(metadata.get_data("categorical").shape[1])) - if len(metadata.get_col_headers()) < args.metadata_cols: - args.metadata_cols = len(metadata.get_col_headers()) - return metadata +def define_metadata_types(metadata): + # Define all COLUMN TYPES as default + types = pd.Series(Metadata.default_type, index=metadata.columns) + # Set types + if str(metadata.index[0]).startswith("#"): + # types defined on file: get values defined on the first row + types = metadata.iloc[0] + # Validate declared types + idx_valid = types.isin(Metadata.valid_types) + if not idx_valid.all(): + print_log("Invalid metadata types replaced by: " + Metadata.default_type) + types[~idx_valid] = default_type + else: + # guessed types from read_table + types[metadata.dtypes.map(is_numeric_dtype)] = "numeric" + + return types + + def parse_references(cfg, tax, taxonomy, ranks): references = None if cfg is not None and "references" in cfg: @@ -222,6 +293,7 @@ def parse_mgnify(run_mgnify, cfg, tax, ranks): except Exception as e: print_log("Failed parsing MGnify database file [" + cfg["external"]["mgnify"] + "], skipping") print_log(str(e)) + return None # Filter to keep only used ranks, if provided if ranks: mgnify = mgnify.loc[mgnify['rank'].isin(ranks)] @@ -270,7 +342,7 @@ def run_correlation(table, top_obs_corr): return corr -def parse_input_file(input_file, unassigned_header, transpose, sample_replace): +def parse_input_file(input_file, unassigned_header, transpose, sample_replace, cumm_levels): if input_file.endswith(".biom"): table_df = biom.load_table(input_file).to_dataframe(dense=True) @@ -298,7 +370,10 @@ def parse_input_file(input_file, unassigned_header, transpose, sample_replace): print_log(" ...") # Sum total before split unassigned or filter - total = table_df.sum(axis=1) + if cumm_levels: + total = table_df.max(axis=1) + else: + total = table_df.sum(axis=1) # unique unassigned/unclassified for table # Separate unassigned counts column from main data frame @@ -387,7 +462,7 @@ def trim_table(table_df): return table_df -def parse_multi_table(table_df, ranks, tax, level_separator, obs_replace): +def parse_multi_table(table_df, ranks, tax, level_separator, obs_replace, cumm_levels): from grimer.grimer import _debug # Transpose table (obseravations as index) and expand ranks in columns @@ -455,7 +530,10 @@ def parse_multi_table(table_df, ranks, tax, level_separator, obs_replace): for i, r in parsed_ranks.items(): # ranks_df and table_df.T have the same shape ranked_table_df = pd.concat([ranks_df[r], table_df.T.reset_index(drop=True)], axis=1) - ranked_tables[r] = ranked_table_df.groupby([r], dropna=True).sum().T + if cumm_levels: + ranked_tables[r] = ranked_table_df.groupby([r], dropna=True).max().T + else: + ranked_tables[r] = ranked_table_df.groupby([r], dropna=True).sum().T ranked_tables[r].columns.name = None lineage = ranks_df @@ -639,7 +717,7 @@ def run_decontam(run_decontam, cfg, table, metadata, control_samples): print("\n".join(df_decontam.index[df_decontam["controls"]]), file=outf) outf.close() else: - print("Could not find valid control entries, skipping") + print_log("Could not find valid control entries, skipping") return None decontam = Decontam(df_decontam) @@ -862,5 +940,5 @@ def print_logo_cli(version): print_log(" ╔═╗╦═╗╦╔╦╗╔═╗╦═╗ ") print_log(" ║ ╦╠╦╝║║║║║╣ ╠╦╝ ") print_log(" ╚═╝╩╚═╩╩ ╩╚═╝╩╚═ ") - print_log(" v" + version) + print_log(" v" + version) print_log("==================") diff --git a/grimer/grimer.py b/grimer/grimer.py index 467b530..9a9bb04 100755 --- a/grimer/grimer.py +++ b/grimer/grimer.py @@ -64,7 +64,7 @@ def main(argv=sys.argv[1:]): return 1 print_log("- Parsing metadata") - metadata = parse_metadata(args, table) + metadata = parse_metadata(args, table.samples.to_list()) print_log("- Parsing references") references = parse_references(cfg, tax, args.taxonomy, table.ranks()) @@ -78,7 +78,7 @@ def main(argv=sys.argv[1:]): print_log("- Running DECONTAM") decontam = run_decontam(args.decontam, cfg, table, metadata, control_samples) - print_log("- Running hiearchical clustering") + print_log("- Running hierarchical clustering") hcluster, dendro = run_hclustering(table, args.linkage_methods, args.linkage_metrics, args.transformation, args.skip_dendrogram, args.optimal_ordering) print_log("- Running correlation") @@ -301,6 +301,8 @@ def main(argv=sys.argv[1:]): logo_path = os.path.join(script_dir, "img", "logo.png") final_layout = make_layout(ele, sizes, Config.version, logo_path, args.title, args.output_plots) + if final_layout is None: + return 1 template = include_scripts({os.path.join(script_dir, "js", "func.js"): "script", os.path.join(script_dir, "js", "popup.js"): "script", diff --git a/grimer/layout.py b/grimer/layout.py index 6991520..2590c86 100644 --- a/grimer/layout.py +++ b/grimer/layout.py @@ -1,11 +1,12 @@ from bokeh.layouts import column, row, gridplot from bokeh.models import Spacer, Tabs, Panel, Div +from grimer.func import print_log import base64 def make_layout(ele, sizes, version, logo_path, title, output_plots): - main_panels = [] + main_panels = {} if "overview" in output_plots: filterwidgets = column(ele["obstable"]["wid"]["frequency_spinner"], ele["obstable"]["wid"]["counts_perc_avg_spinner"], @@ -26,7 +27,7 @@ def make_layout(ele, sizes, version, logo_path, title, output_plots): info_tabs.append(Panel(child=column(ele["mgnify"]["fig"], row(ele["mgnify"]["wid"]["biome_spinner"], ele["mgnify"]["wid"]["help_button"]) - ), title="MGNify")) + ), title="MGnify")) if ele["decontam"]["fig"]: info_tabs.append(Panel(child=column(ele["decontam"]["fig"], row(ele["decontam"]["wid"]["pscore_text"], @@ -51,7 +52,7 @@ def make_layout(ele, sizes, version, logo_path, title, output_plots): ele["samplebars"]["wid"]["y2_select"], ele["samplebars"]["wid"]["help_button"]), ele["samplebars"]["wid"]["toggle_label"]) - main_panels.append(Panel(child=column(row_obstable, row_barpot, sizing_mode="stretch_width"), title="Overview")) + main_panels["overview"] = Panel(child=column(row_obstable, row_barpot, sizing_mode="stretch_width"), title="Overview") if "samples" in output_plots: selectwidgets = column(ele["sampletable"]["wid"]["total_counts_spinner"], @@ -72,7 +73,7 @@ def make_layout(ele, sizes, version, logo_path, title, output_plots): ele["obsbars"]["wid"]["sort_select"], ele["obsbars"]["wid"]["help_button"]), ele["obsbars"]["wid"]["toggle_label"]) - main_panels.append(Panel(child=column(row_sampletable, row_obsbars, sizing_mode="stretch_width"), title="Samples")) + main_panels["samples"] = Panel(child=column(row_sampletable, row_obsbars, sizing_mode="stretch_width"), title="Samples") if "heatmap" in output_plots: row_heatmap = gridplot([[ele["heatmap"]["fig"], ele["dendroy"]["fig"], ele["metadata"]["fig"]], @@ -92,7 +93,7 @@ def make_layout(ele, sizes, version, logo_path, title, output_plots): ele["metadata"]["wid"]["toggle_legend"], sizing_mode="stretch_height", width=300)) - main_panels.append(Panel(child=column(row_heatmap, row_heatmap_widgets, sizing_mode="stretch_width"), title="Heatmap")) + main_panels["heatmap"] = Panel(child=column(row_heatmap, row_heatmap_widgets, sizing_mode="stretch_width"), title="Heatmap") if "correlation" in output_plots: row_correlation = row(column(ele["correlation"]["wid"]["rank_select"], @@ -101,9 +102,16 @@ def make_layout(ele, sizes, version, logo_path, title, output_plots): ele["correlation"]["wid"]["toggle_label"], ele["correlation"]["wid"]["help_button"]), ele["correlation"]["fig"]) - main_panels.append(Panel(child=column(row_correlation, sizing_mode="stretch_width"), title="Correlation")) + main_panels["correlation"] = Panel(child=column(row_correlation, sizing_mode="stretch_width"), title="Correlation") - main_tab = Tabs(tabs=main_panels) + if not main_panels: + print_log("No valid plots to output") + return None + else: + # Add plots in user chosen order + tabs = [main_panels[p] for p in output_plots] + + main_tab = Tabs(tabs=tabs) logo_base64 = base64.b64encode(open(logo_path, 'rb').read()) # encode to base64 logo_base64 = logo_base64.decode() # convert to string logo_div = Div(text='' + 'v' + version + '', width=300, height=40, sizing_mode="fixed") diff --git a/grimer/metadata.py b/grimer/metadata.py index 8fa3359..8e36663 100644 --- a/grimer/metadata.py +++ b/grimer/metadata.py @@ -1,83 +1,15 @@ -import pandas as pd -from pandas.api.types import is_numeric_dtype - - class Metadata: valid_types = ["categorical", "numeric"] default_type = "categorical" - def __init__(self, metadata_file: str="", metadata_table: pd.DataFrame=None, samples: list=[]): - if metadata_file: - # Read metadata and let pandas guess dtypes, index as str - self.data = pd.read_table(metadata_file, sep='\t', header=0, skiprows=0, index_col=0, dtype={0: str}) - else: - # Metadata from table (biom file) - self.data = metadata_table - - # Enforce string index - self.data.index = self.data.index.astype('str') - - # Define all COLUMN TYPES as default - self.types = pd.Series(self.default_type, index=self.data.columns) - - # Set types - if str(self.data.index[0]).startswith("#"): - # types defined on file - self.set_hard_types() - else: - # guessed types from read_table - self.types[self.data.dtypes.map(is_numeric_dtype)] = "numeric" - - # Convert datatypes to adequate numeric values (int, float) - self.data = self.data.convert_dtypes(infer_objects=False, convert_string=False, convert_boolean=False) - # Re-convert everython to object to standardize (int64 NA is not seriazable on bokeh) - self.data = self.data.astype("object") - - # Remove empty fields - null_cols = self.data.isna().all(axis=0) - if any(null_cols): - self.data = self.data.loc[:, ~null_cols] - self.types = self.types[~null_cols] - print_log(str(sum(null_cols)) + " fields removed without valid values") - - # Convert NaN on categorical to "" - self.data[self.types[self.types == "categorical"].index] = self.data[self.types[self.types == "categorical"].index].fillna('') - # Convert boolean from categorical to String - mask = self.data[self.types[self.types == "categorical"].index].applymap(type) != bool - self.data[self.types[self.types == "categorical"].index] = self.data[self.types[self.types == "categorical"].index].where(mask, self.data[self.types[self.types == "categorical"].index].replace({True: 'True', False: 'False'})) - - # Remove names - self.data.index.names = [None] - self.types.name = None - - # sort and filter by given samples - if samples: - self.data = self.data.reindex(samples) - - # Check if matched metadata and samples - null_rows = self.data.isna().all(axis=1) - if any(null_rows): - #self.data = self.data.loc[~null_rows, :] - print_log(str(sum(null_rows)) + " samples without valid metadata") + def __init__(self, md, types): + self.data = md + self.types = types def __repr__(self): args = ['{}={}'.format(k, repr(v)) for (k, v) in vars(self).items()] return 'Metadata({})'.format(', '.join(args)) - def set_hard_types(self): - # Get values defined on the first row - self.types = self.data.iloc[0] - # Drop row with types from main data - self.data.drop(self.types.name, inplace=True) - # Validate declared types - idx_valid = self.types.isin(self.valid_types) - if not idx_valid.all(): - print_log("Invalid metadata types replaced by: " + self.default_type) - self.types[~idx_valid] = self.default_type - # Enforce column type on dataframe - self.data[self.types[self.types == "categorical"].index] = self.data[self.types[self.types == "categorical"].index].astype(str) - self.data[self.types[self.types == "numeric"].index] = self.data[self.types[self.types == "numeric"].index].apply(pd.to_numeric) - def get_col_headers(self): return self.data.columns diff --git a/grimer/plots.py b/grimer/plots.py index 97aa742..90f662c 100644 --- a/grimer/plots.py +++ b/grimer/plots.py @@ -643,7 +643,7 @@ def plot_mgnify(sizes, cds_p_mgnify): def plot_mgnify_widgets(): biome_spinner = Spinner(title="Biome level", low=1, high=5, value=1, step=1, width=100, height=50) # orientation="horizontal") help_text = """ -Pie chart with the number of occurrences of the selected taxa in the table by environment (biome) in other microbiome studies analyzed and publicly available at the [MGNify](https://www.ebi.ac.uk/metagenomics) [1] resource. +Pie chart with the number of occurrences of the selected taxa in the table by environment (biome) in other microbiome studies analyzed and publicly available at the [MGnify](https://www.ebi.ac.uk/metagenomics) [1] resource. The biomes are hierarchically classified in 5 different levels, from general (1) to specific (5). For example: 1) Host-associated > 2) Human > 3) Digestive system > 4) Large intestine > 5) Fecal diff --git a/scripts/bacdive_download.py b/scripts/bacdive_download.py index 1cd6837..d864ea2 100755 --- a/scripts/bacdive_download.py +++ b/scripts/bacdive_download.py @@ -7,17 +7,17 @@ ## filter infection? ## find names? -data = {("Host_Human-HostBodySite_Limb", "Limbs"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=39&filters%5B1%5D%5Bcat3%5D=&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodySite_Organ_Ear", "Ear"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=209&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodySite_Organ_Eye", "Eye"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=210&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodySite_Organ_Nose", "Nose"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=217&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodySite_Organ_SkinNailHair", "Skin/Nail/Hair"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=219&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodySite_Organ_OralCavityAndAirways", "Oral"): "https://bacdive.dsmz.de/isolation-sources?filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=41&filters%5B1%5D%5Bcat3%5D=&filters%5B1%5D%5Bcolor%5D=5&csv=1", - ("Host_Human-HostBodyProduct_OralCavityAndAirways_Saliva", "Saliva"): "https://bacdive.dsmz.de/isolation-sources?filters%5B1%5D%5Bcat1%5D=4&filters%5B1%5D%5Bcat2%5D=29&filters%5B1%5D%5Bcat3%5D=&filters%5B1%5D%5Bcolor%5D=4&filters%5B2%5D%5Bcat1%5D=6&filters%5B2%5D%5Bcat2%5D=47&filters%5B2%5D%5Bcat3%5D=276&filters%5B2%5D%5Bcolor%5D=6&csv=1"} +data = {("Host_Human-HostBodySite_Limb", "Limbs"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=39&filters%5B1%5D%5Bcat3%5D=&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodySite_Organ_Ear", "Ear"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=209&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodySite_Organ_Eye", "Eye"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=210&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodySite_Organ_Nose", "Nose"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=217&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodySite_Organ_SkinNailHair", "Skin/Nail/Hair"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=40&filters%5B1%5D%5Bcat3%5D=219&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodySite_Organ_OralCavityAndAirways", "Oral"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=5&filters%5B1%5D%5Bcat2%5D=41&filters%5B1%5D%5Bcat3%5D=&filters%5B1%5D%5Bcolor%5D=5&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1", + ("Host_Human-HostBodyProduct_OralCavityAndAirways_Saliva", "Saliva"): "https://bacdive.dsmz.de/isolation-sources/csv?filter-domain=&filter-phylum=&filter-class=&filter-ordo=&filter-family=&filter-genus=&filters%5B0%5D%5Bcat1%5D=4&filters%5B0%5D%5Bcat2%5D=29&filters%5B0%5D%5Bcat3%5D=&filters%5B0%5D%5Bcolor%5D=4&filters%5B1%5D%5Bcat1%5D=6&filters%5B1%5D%5Bcat2%5D=47&filters%5B1%5D%5Bcat3%5D=276&filters%5B1%5D%5Bcolor%5D=6&iso_3_country=&polygon-strain-ids=&sort_by_order=ASC&sort_by=st.species&pfc=&csv=1"} -tax = NcbiTx() +tax = NcbiTx(extended_names=True) -print('"Human-related bacterial isolates from BacDive:"') +print('"Human-related bacterial isolates from BacDive":') for (search, name), url in data.items(): print(' "' + name + '":') @@ -25,7 +25,7 @@ parsed_ids = set() df = pd.read_table(url, sep=",", index_col=0).dropna(subset=["Species"]) for species in df.Species.unique(): - taxids = tax.search_name(species, exact=True) # rank="species" + taxids = tax.search_name(species, rank="species", exact=True) if not taxids: sys.stderr.write("Species name not found: " + species + "\n") elif len(taxids) > 1: diff --git a/scripts/ehomd_download.py b/scripts/ehomd_download.py index f76ace4..246b5c2 100755 --- a/scripts/ehomd_download.py +++ b/scripts/ehomd_download.py @@ -7,7 +7,7 @@ def get_taxid(url): try: - sys.stderr.write(url+"\n") + sys.stderr.write(url + "\n") assembly_stats = url + "/" + url.split("/")[-1] + "_assembly_stats.txt" filedata = urllib.request.urlopen(assembly_stats).read().decode() x = re.search("# Taxid:[\s0-9]*\\r\\n", filedata) diff --git a/scripts/env.yaml b/scripts/env.yaml new file mode 100644 index 0000000..f46bea1 --- /dev/null +++ b/scripts/env.yaml @@ -0,0 +1,8 @@ +name: grimer_dev +channels: + - defaults + - bioconda + - conda-forge +dependencies: + - pandas + - jsonapi-client>=0.9.7 #mgnify scripts diff --git a/scripts/mgnify_download.py b/scripts/mgnify_download.py index e84269b..8431ebc 100755 --- a/scripts/mgnify_download.py +++ b/scripts/mgnify_download.py @@ -14,9 +14,7 @@ Script to download taxonomy abundance files and metadata from MGnify - It always downloads latest available results based on the pipeline version -Usage: ./mgnify_download.py study_accession [output_folder] -Example single: ./mgnify_download.py MGYS00000554 -Example dump: seq -f "MGYS%08g" 1 5724 | xargs -P 8 -I {} ./mgnify_download.py -i {} -v -g -o mgnify_dump_20210408/ > mgnify_dump_20210408.log 2>&1 & +Example dump: seq -f "MGYS%08g" 1 5724 | xargs -P 8 -I {} ./mgnify_download.py -i {} -v -g -o mgnify_dump/ > mgnify_dump.log 2>&1 & """ @@ -33,7 +31,7 @@ def main(argv=sys.argv[1:]): study_accession = args.study_accession if args.output_prefix: - prefix = args.output_prefix + prefix = args.output_prefix + study_accession else: prefix = study_accession gz = args.gzip diff --git a/setup.py b/setup.py index 4c37b11..8ba21b4 100755 --- a/setup.py +++ b/setup.py @@ -13,7 +13,7 @@ def read(filename): setup( name="grimer", - version="1.0.0-alpha1", + version="1.0.0", url="https://www.github.com/pirovc/grimer", license='MIT',