TARGET_SEQ_1FVV_A.needle

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# Program: needle
# Rundate: Thu 25 Oct 2018 13:00:04
# Commandline: needle
#    -sid1 TARGET_SEQ
#    -asequence TARGET_SEQ.fasta
#    -sid2 1FVV_A
#    -bsequence /Users/kirubapalani/Desktop/git_hub_tutorial/pdb_sequeuce_fasta/1FVV_A.fasta
#    -gapopen 10.0
#    -gapextend 0.5
#    -aformat3 markx3
#    -outfile TARGET_SEQ_1FVV_A.needle
# Align_format: markx3
# Report_file: TARGET_SEQ_1FVV_A.needle
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#=======================================
#
# Aligned_sequences: 2
# 1: TARGET_SEQ
# 2: 1FVV_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     295/298 (99.0%)
# Similarity:   295/298 (99.0%)
# Gaps:           3/298 ( 1.0%)
# Score: 1535.0
# 
#
#=======================================

>TARGET_SEQ ..
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIR
EISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIP
LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR
AFGVPVRTY-HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR
ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSK
VVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHL--
>1FVV_A ..
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIR
EISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIP
LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR
AFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR
ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSK
VVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL

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