README.md

PomBase code for processing domains from InterProScan

This program processes the JSON format output of InterProScan to generate an simplified JSON file of domain information.

It also runs TMHMM and segmasker and includes the results in the JSON output.

Running

Run with:

PATH=$PATH_TO_TMHMM_EXE:$PATH /var/pomcur/bin/pombase-domain-process \
    -p pombe_peptide.fa -i interproscan_output.json
    -o pombe_domain_results.json

Status