From ceae782ef34c57ce79b5f7870686eb57e72f59bf Mon Sep 17 00:00:00 2001 From: Pradeep Rajasekhar Date: Fri, 28 Jun 2024 07:12:29 +1000 Subject: [PATCH] Update README.md --- README.md | 20 +++++++++++++------- 1 file changed, 13 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 7f2e732..5baede4 100644 --- a/README.md +++ b/README.md @@ -1,20 +1,26 @@ # Cellpose -Google Colab notebooks for prediction using cellpose (v2.0). -This currently only supports 2D prediction +**This notebook uses cellpose v2.3.2.** + 2D Notebook: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/pr4deepr/cellpose-colab/blob/main/Cellpose_cell_segmentation_2D_prediction_only.ipynb) Cellpose: Cellpose: https://github.com/MouseLand/cellpose - 3D prediction is available by the [ZeroCostDL4Mic team](https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki). The notebooks are inspired by the [ZeroCostDL4Mic](https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki) series of notebooks from the Henriques Lab and do borrow components from it as well. -v0.3 updates: +v0.5 update: +* 2024/04/09 Constrained cellpose version to be 2.3.2 to maintain compatibility. + + +v0.4 update: +* Fixed bug where new models could not be used for prediction + + +v0.3 update: * Updated for Cellpose 2.0 -* Added the new models in the notebook -* Fixed a numpy error when installing cellpose in colab environment. Fix is to restart colab after installing cellpose -* Parameters.txt file gets saved in output folder so as to record the parameters used for cellpose prediction +* New models incorporated: https://cellpose.readthedocs.io/en/latest/models.html +* Parameters used in cellpose will be saved as a txt file (Thanks for suggestion Kota Miura) *********************** ## Running cellpose and colab on local conda installation