Build following dockerfiles -- itkKernelFunction.h not found

[zerothi]

I am trying to follow the docker instructions to try and build locally.

The reason for doing local builds is that the released executables are build against a newer glibc (same as #92).

When following the docker builds the qt release 6.4 is not found anymore, #129. However, I don't have problems (so far) with the linker problem.

So, I am doing something like this:

#!/bin/bash
#
# Simple script to build itk
#

# on debian 
# sudo apt install '^libxcb.*-dev'
# + some more libx11 libraries
QTVER=6.5.3

install_dir=$(pwd)/install

mkdir -p qt
cd qt
rm -rf qt*-$QTVER install

if [ ! -e $install_dir/bin/qt-configure-module ]; then
  rm -rf qtbase-everywhere-src-$QTVER*
  wget https://download.qt.io/official_releases/qt/${QTVER%.*}/$QTVER/submodules/qtbase-everywhere-src-$QTVER.tar.xz
  tar -xf qtbase-everywhere-src-$QTVER.tar.xz

  cd qtbase-everywhere-src-$QTVER
  ./configure -xcb -prefix $install_dir
  cmake --build . --parallel
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --install .
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cd ..
fi

if [ ! -e $install_dir/lib/libQt6Qml.so ]; then
  rm -rf qtdeclarative-everywhere-src-$QTVER*
  wget https://download.qt.io/official_releases/qt/${QTVER%.*}/$QTVER/submodules/qtdeclarative-everywhere-src-$QTVER.tar.xz
  tar -xf qtdeclarative-everywhere-src-$QTVER.tar.xz
  cd qtdeclarative-everywhere-src-$QTVER
  cmake -G Ninja -DCMAKE_PREFIX_PATH=$install_dir -DCMAKE_INSTALL_PREFIX=$install_dir
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --build . --parallel || : cmake --build . --parallel
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --install .
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cd ..
fi

cd ..


# Install VTK
if [ ! -d $install_dir/include/vtk-9.1 ]; then
  git clone --branch v9.1.0 --depth 1 https://gitlab.kitware.com/vtk/vtk.git vtk-src
  cd vtk-src
  mkdir build && cd build
  cmake \
      -G Ninja \
      -DCMAKE_BUILD_TYPE=Release \
      -DBUILD_SHARED_LIBS=OFF \
      -DVTK_USE_SYSTEM_LIBRARIES=ON \
      -DVTK_RENDERING_BACKEND=OpenGL2 \
      -DVTK_REQUIRED_OBJCXX_FLAGS= \
      -DBUILD_TESTING=OFF \
      -DBUILD_EXAMPLES=OFF \
      -DVTK_GROUP_ENABLE_Qt=YES \
      -DVTK_MODULE_ENABLE_VTK_GUISupportQtQuick=NO \
      -DVTK_MODULE_ENABLE_VTK_GUISupportQtSQL=NO \
      -DCMAKE_PREFIX_PATH=$install_dir \
      -DCMAKE_INSTALL_PREFIX=$install_dir \
      ..
    [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --build . --parallel
    [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --install .
    [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cd ../..
fi


# Install ITK
# Download and build ITK
if [ ! -e $install_dir/bin/itkTestDriver ]; then
  rm -rf itk-src
  git clone --branch v5.2.1 --depth 1 https://github.com/InsightSoftwareConsortium/ITK.git itk-src
  cd itk-src
  mkdir build && cd build
  cmake -G Ninja  \
      -DCMAKE_PREFIX_PATH=$install_dir \
      -DCMAKE_INSTALL_PREFIX=$install_dir \
      -DCMAKE_BUILD_TYPE=Release \
      -DBUILD_TESTING=OFF \
      -DBUILD_EXAMPLES=OFF \
      -DModule_MorphologicalContourInterpolation=ON \
      ..
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --build . --parallel
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --install .
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cd ../..
fi

# Install ITKSNAP
if [ ! -e $install_dir/bin/itksnap ]; then
  rm -rf itksnap-src
  git clone --branch v4.0.0 --depth 1 https://github.com/pyushkevich/itksnap.git itksnap-src
  cd itksnap-src
  git submodule init
  git submodule update
  mkdir build && cd build
  cmake -G Ninja  \
      -DCMAKE_PREFIX_PATH=$install_dir \
      -DCMAKE_INSTALL_PREFIX=$install_dir \
      -DCMAKE_BUILD_TYPE=Release \
      -DITK_DIR=$install_dir \
      -DVTK_DIR=$install_dir \
      ..
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --build . --parallel
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cmake --install .
  [ $? -ne 0 ] && { echo "Error!" ; exit 1 ; }
  cd ../..
fi

However, I get this problem:

[33/693] Building CXX object CMakeFiles/itksnapui_model.dir/GUI/Model/PolygonDrawingModel.cxx.o
FAILED: CMakeFiles/itksnapui_model.dir/GUI/Model/PolygonDrawingModel.cxx.o 
/opt/generic/gcc/12.3.0/bin/g++ -DGLEW_STATIC -DITK_IO_FACTORY_REGISTER_MANAGER -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Dkiss_fft_scalar=double -DvtkRenderingContext2D_AUTOINIT_INCLUDE=\"/home/nicpa/dcc/tickets/35329/itksnap-src/build/CMakeFiles/vtkModuleAutoInit_2a29b50fd6b6860aabde65be71648124.h\" -DvtkRenderingCore_AUTOINIT_INCLUDE=\"/home/nicpa/dcc/tickets/35329/itksnap-src/build/CMakeFiles/vtkModuleAutoInit_2a29b50fd6b6860aabde65be71648124.h\" -DvtkRenderingOpenGL2_AUTOINIT_INCLUDE=\"/home/nicpa/dcc/tickets/35329/itksnap-src/build/CMakeFiles/vtkModuleAutoInit_2a29b50fd6b6860aabde65be71648124.h\" -DvtkRenderingVolume_AUTOINIT_INCLUDE=\"/home/nicpa/dcc/tickets/35329/itksnap-src/build/CMakeFiles/vtkModuleAutoInit_2a29b50fd6b6860aabde65be71648124.h\" -IITKFactoryRegistration -I/opt/generic/curl/8.0.1/include -I../Common -I../Common/ITKExtras -I../Common/JSon -I../Common/ITKBinaryWeightedAverage -I../Logic -I../Logic/Common -I../Logic/Framework -I../Logic/ImageWrapper -I../Logic/LevelSet -I../Logic/Mesh -I../Logic/Preprocessing -I../Logic/Preprocessing/GMM -I../Logic/Preprocessing/Texture -I../Logic/RLEImage -I../Logic/Slicing -I../Logic/WorkspaceAPI -I../Submodules/c3d -I../Submodules/c3d/itkextras -I../Submodules/c3d/itkextras/RandomForest -I../Submodules/c3d/itkextras/PovRayIO -I../Submodules/c3d/api -I../Submodules/c3d/adapters -I../Submodules/greedy/src -I../Submodules/greedy/src/ITKFilters/include -I../GUI -I../GUI/Model -I../GUI/Renderer -I../GUI/Renderer/OrientationWidget/Reorient -I../GUI/Qt -I../GUI/Qt/Components -I../GUI/Qt/Coupling -I../GUI/Qt/External -I../GUI/Qt/External/ColorWheel -I../GUI/Qt/ModelView -I../GUI/Qt/Testing -I../GUI/Qt/View -I../GUI/Qt/Windows -I../GUI/Qt/Windows/DSS -I../GUI/Qt/Windows/MeshExportWizard -I../GUI/Qt/Windows/MeshImportWizard -I../GUI/Qt/Windows/Registration -I../Testing/Logic -I../Testing/GUI/Qt -I/home/nicpa/dcc/tickets/35329/install/lib/cmake/ITK-5.2/Utilities/zlib -I. -I/home/nicpa/dcc/tickets/35329/install/include/QtDBus -I/home/nicpa/dcc/tickets/35329/install/include/QtConcurrent -I/home/nicpa/dcc/tickets/35329/install/include/QtQml -I/home/nicpa/dcc/tickets/35329/install/include/QtQmlIntegration -I/home/nicpa/dcc/tickets/35329/install/include/QtNetwork -isystem /home/nicpa/dcc/tickets/35329/install/include/ITK-5.2 -isystem /home/nicpa/dcc/tickets/35329/install/include/QtWidgets -isystem /home/nicpa/dcc/tickets/35329/install/include -isystem /home/nicpa/dcc/tickets/35329/install/include/QtCore -isystem /home/nicpa/dcc/tickets/35329/install/include/QtGui -isystem /home/nicpa/dcc/tickets/35329/install/include/QtOpenGL -isystem /home/nicpa/dcc/tickets/35329/install/include/vtk-9.1 -isystem /home/nicpa/dcc/tickets/35329/install/include/vtk-9.1/vtkfreetype/include -isystem /home/nicpa/dcc/tickets/35329/install/mkspecs/linux-g++ -isystem /home/nicpa/dcc/tickets/35329/install/include/QtOpenGLWidgets -O3 -DNDEBUG -fPIC -std=gnu++17 -MD -MT CMakeFiles/itksnapui_model.dir/GUI/Model/PolygonDrawingModel.cxx.o -MF CMakeFiles/itksnapui_model.dir/GUI/Model/PolygonDrawingModel.cxx.o.d -o CMakeFiles/itksnapui_model.dir/GUI/Model/PolygonDrawingModel.cxx.o -c ../GUI/Model/PolygonDrawingModel.cxx
In file included from ../Common/ITKExtras/itkBSplineScatteredDataPointSetToImageFilter.h:21,
                 from ../GUI/Model/PolygonDrawingModel.cxx:12:
../Common/ITKExtras/itkCoxDeBoorBSplineKernelFunction.h:20:10: fatal error: itkKernelFunction.h: No such file or directory
   20 | #include "itkKernelFunction.h"
      |          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
[46/693] Building CXX object CMakeFiles/itksnapui_model.dir/GUI/Model/InterpolateLabelModel.cxx.o
ninja: build stopped: subcommand failed.
Error!

Indeed that header file is not found, only itkKernelFunctionBase.h, what am I missing?