diff --git a/CHANGELOG.md b/CHANGELOG.md index e20d1585a..5c142b0e6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,22 @@ # Qiita changelog +Version 2021.11 +--------------- + +* Upgrading PostgreSQL from 9.5 to 13.4 as 9.5 is no longer supported +* Updated SortMeRNA within qt-meta to filter RNA reads to run as job arrays to speed up processing. A full NovaSeq run will now take ~15hrs vs. ~161hrs. +* Added qiime2.2021.11 to the system; which updated these plugins: qp-qiime2, qtp-biom, qtp-diversity, qtp-visualization. +* Jobs no longer need to be linked to studies or analyses; this allows us to create general purpose jobs like "admin like" jobs that can be fully traced in Qiita. +* Added a new user level: "wet-lab admin" so they can start "admin like" jobs in the system without having to be an actual admin. +* Added a new plugin: "qp-knight-lab-processing" that provides the general Knight Lab sequence processing: from BCL to per_sample_FASTQ to the upload folders in Qiita. +* Added "Oxford_Nanopore" as a valid "platform" with "GridION" as valid "instrument_model" to the system; this allows submission of this data to EBI-ENA. +* Allow chucked download of metadata files in analyses; this allows to process large meta-analysis (like those for The Microsetta Initiative) without worker blockage. +* Added to the qp-qiime2 plugin the possibility of filtering tables based on system available "FeatureData[Sequence]"; to start we added 90/100/150 bps bloom tables. +* Now we can instantiate a study via their title (Study.from_title); this will facilitate orchestration with qebil. +* Speed up Study listing for admins and general users; the admin study display came down from 20 to 2 seconds. +* Fixed the following issues: [3142](https://github.com/qiita-spots/qiita/issues/3142), [3149](https://github.com/qiita-spots/qiita/issues/3149), [3150](https://github.com/qiita-spots/qiita/issues/3150), [3119](https://github.com/qiita-spots/qiita/issues/3119), and [3160](https://github.com/qiita-spots/qiita/issues/3160). + + Version 2021.09 --------------- diff --git a/qiita_core/__init__.py b/qiita_core/__init__.py index 030cb40bd..eae6d2551 100644 --- a/qiita_core/__init__.py +++ b/qiita_core/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2021.09" +__version__ = "2021.11" diff --git a/qiita_db/__init__.py b/qiita_db/__init__.py index de2ed1abf..f5b72f836 100644 --- a/qiita_db/__init__.py +++ b/qiita_db/__init__.py @@ -27,7 +27,7 @@ from . import user from . import processing_job -__version__ = "2021.09" +__version__ = "2021.11" __all__ = ["analysis", "artifact", "archive", "base", "commands", "environment_manager", "exceptions", "investigation", "logger", diff --git a/qiita_pet/__init__.py b/qiita_pet/__init__.py index 030cb40bd..eae6d2551 100644 --- a/qiita_pet/__init__.py +++ b/qiita_pet/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2021.09" +__version__ = "2021.11" diff --git a/qiita_pet/handlers/api_proxy/__init__.py b/qiita_pet/handlers/api_proxy/__init__.py index f913fc1c8..a00b812af 100644 --- a/qiita_pet/handlers/api_proxy/__init__.py +++ b/qiita_pet/handlers/api_proxy/__init__.py @@ -38,7 +38,7 @@ from .user import (user_jobs_get_req) from .util import check_access, check_fp -__version__ = "2021.09" +__version__ = "2021.11" __all__ = ['prep_template_summary_get_req', 'data_types_get_req', 'study_get_req', 'sample_template_filepaths_get_req', diff --git a/qiita_ware/__init__.py b/qiita_ware/__init__.py index 030cb40bd..eae6d2551 100644 --- a/qiita_ware/__init__.py +++ b/qiita_ware/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2021.09" +__version__ = "2021.11" diff --git a/setup.py b/setup.py index 808791617..5132b9474 100644 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ from setuptools import setup from glob import glob -__version__ = "2021.09" +__version__ = "2021.11" classes = """