HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance #41198

beiertu-mms · 2024-06-14T07:04:36Z

Describe the bug

We have a the following one-to-many entities

Post

  @OneToMany(mappedBy = "post", cascade = [CascadeType.ALL], orphanRemoval = true, fetch = FetchType.LAZY)
  private val _comments: MutableList<PostComment> = mutableListOf()

  val comments: List<PostComment> get() = _comments.toList()

  fun removeComment(comment: PostComment) {
      _comments.remove(comment)
      comment.post = null
  }

PostComment

  @ManyToOne(fetch = FetchType.LAZY, optional = false)
  @JoinColumn(name = "post_id")
  var post: Post? = null

Up until Quarkus v3.10.2, adding new PostComment to a Post works based on the test here.
But when updating the version to >=3.11.0, we got the error
A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance (github action's log).

Expected behavior

No exceptions are thrown when adding and persisting a new item to a bidirectional OneToMany entities.

Actual behavior

Failed to register a post: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: de.tungbeier.panache.Post._comments
	at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:98)

Full logs

Failed to register a post: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: de.tungbeier.panache.Post._comments
	at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:98)
	at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:49)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.lambda$flushCollections$5(AbstractReactiveFlushingEventListener.java:237)
	at org.hibernate.engine.internal.StatefulPersistenceContext.forEachCollectionEntry(StatefulPersistenceContext.java:1328)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.flushCollections(AbstractReactiveFlushingEventListener.java:234)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.lambda$flushEverythingToExecutions$1(AbstractReactiveFlushingEventListener.java:103)
	at java.base/java.util.concurrent.CompletableFuture.uniAcceptNow(CompletableFuture.java:757)
	at java.base/java.util.concurrent.CompletableFuture.uniAcceptStage(CompletableFuture.java:735)
	at java.base/java.util.concurrent.CompletableFuture.thenAccept(CompletableFuture.java:2214)
	at java.base/java.util.concurrent.CompletableFuture.thenAccept(CompletableFuture.java:144)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.flushEverythingToExecutions(AbstractReactiveFlushingEventListener.java:92)
	at org.hibernate.reactive.event.impl.DefaultReactiveFlushEventListener.reactiveOnFlush(DefaultReactiveFlushEventListener.java:41)
	at org.hibernate.event.service.internal.EventListenerGroupImpl.lambda$fireEventOnEachListener$0(EventListenerGroupImpl.java:153)
	at java.base/java.util.concurrent.CompletableFuture.uniComposeStage(CompletableFuture.java:[118](https://github.com/beiertu-mms/quarkus-kotlin-playground/actions/runs/9511750499/job/26218439365?pr=1#step:4:119)7)
	at java.base/java.util.concurrent.CompletableFuture.thenCompose(CompletableFuture.java:2341)
	at java.base/java.util.concurrent.CompletableFuture.thenCompose(CompletableFuture.java:144)
	at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:153)
	at org.hibernate.reactive.session.impl.ReactiveSessionImpl.doFlush(ReactiveSessionImpl.java:982)
	at org.hibernate.reactive.session.impl.ReactiveSessionImpl.reactiveFlush(ReactiveSessionImpl.java:930)
	at io.smallrye.context.impl.wrappers.SlowContextualSupplier.get(SlowContextualSupplier.java:21)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromCompletionStage.subscribe(UniCreateFromCompletionStage.java:24)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniRunSubscribeOn.lambda$subscribe$0(UniRunSubscribeOn.java:27)
	at org.hibernate.reactive.context.impl.VertxContext.execute(VertxContext.java:91)
	at io.smallrye.mutiny.operators.uni.UniRunSubscribeOn.subscribe(UniRunSubscribeOn.java:25)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.performInnerSubscription(UniOnItemTransformToUni.java:81)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:57)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem$KnownItemSubscription.forward(UniCreateFromKnownItem.java:38)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem.subscribe(UniCreateFromKnownItem.java:23)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni.subscribe(UniOnItemTransformToUni.java:25)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.performInnerSubscription(UniOnItemTransformToUni.java:81)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:57)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:60)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem$KnownItemSubscription.forward(UniCreateFromKnownItem.java:38)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem.subscribe(UniCreateFromKnownItem.java:23)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.performInnerSubscription(UniOnItemTransformToUni.java:81)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:57)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem$KnownItemSubscription.forward(UniCreateFromKnownItem.java:38)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromKnownItem.subscribe(UniCreateFromKnownItem.java:23)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni.subscribe(UniOnItemTransformToUni.java:25)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni.subscribe(UniOnItemTransformToUni.java:25)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransform.subscribe(UniOnItemTransform.java:22)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransform.subscribe(UniOnItemTransform.java:22)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnFailureFlatMap.subscribe(UniOnFailureFlatMap.java:31)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.performInnerSubscription(UniOnItemTransformToUni.java:81)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:57)
	at io.smallrye.mutiny.operators.uni.UniOnItemConsume$UniOnItemComsumeProcessor.onItem(UniOnItemConsume.java:43)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:60)
	at io.smallrye.mutiny.operators.uni.UniOperatorProcessor.onItem(UniOperatorProcessor.java:47)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransform$UniOnItemTransformProcessor.onItem(UniOnItemTransform.java:43)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransformToUni$UniOnItemTransformToUniProcessor.onItem(UniOnItemTransformToUni.java:60)
	at io.smallrye.mutiny.operators.uni.UniOnItemTransform$UniOnItemTransformProcessor.onItem(UniOnItemTransform.java:43)
	at io.smallrye.mutiny.operators.uni.UniOperatorProcessor.onItem(UniOperatorProcessor.java:47)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromCompletionStage$CompletionStageUniSubscription.forwardResult(UniCreateFromCompletionStage.java:63)
	at java.base/java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:863)
	at java.base/java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:841)
	at java.base/java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:510)
	at java.base/java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:2179)
	at org.hibernate.reactive.util.async.impl.AsyncTrampoline$TrampolineInternal.unroll(AsyncTrampoline.java:131)
	at org.hibernate.reactive.util.async.impl.AsyncTrampoline$TrampolineInternal.lambda$unroll$0(AsyncTrampoline.java:[126](https://github.com/beiertu-mms/quarkus-kotlin-playground/actions/runs/9511750499/job/26218439365?pr=1#step:4:127))
	at java.base/java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:863)
	at java.base/java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:841)
	at java.base/java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:510)
	at java.base/java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:2179)
	at io.vertx.core.Future.lambda$toCompletionStage$3(Future.java:581)
	at io.vertx.core.impl.future.FutureImpl$4.onSuccess(FutureImpl.java:176)
	at io.vertx.core.impl.future.FutureBase.emitSuccess(FutureBase.java:66)
	at io.vertx.core.impl.future.FutureImpl.tryComplete(FutureImpl.java:259)
	at io.vertx.sqlclient.impl.QueryResultBuilder.tryComplete(QueryResultBuilder.java:88)
	at io.vertx.sqlclient.impl.QueryResultBuilder.tryComplete(QueryResultBuilder.java:32)
	at io.vertx.core.Promise.complete(Promise.java:66)
	at io.vertx.core.Promise.handle(Promise.java:51)
	at io.vertx.core.Promise.handle(Promise.java:29)
	at io.vertx.core.impl.future.FutureImpl$4.onSuccess(FutureImpl.java:176)
	at io.vertx.core.impl.future.FutureBase.emitSuccess(FutureBase.java:66)
	at io.vertx.core.impl.future.FutureImpl.tryComplete(FutureImpl.java:259)
	at io.vertx.core.impl.future.PromiseImpl.onSuccess(PromiseImpl.java:49)
	at io.vertx.core.impl.future.PromiseImpl.handle(PromiseImpl.java:41)
	at io.vertx.sqlclient.impl.TransactionImpl.lambda$wrap$0(TransactionImpl.java:72)
	at io.vertx.core.impl.future.FutureImpl$4.onSuccess(FutureImpl.java:176)
	at io.vertx.core.impl.future.FutureBase.lambda$emitSuccess$0(FutureBase.java:60)
	at io.netty.util.concurrent.AbstractEventExecutor.runTask(AbstractEventExecutor.java:173)
	at io.netty.util.concurrent.AbstractEventExecutor.safeExecute(AbstractEventExecutor.java:166)
	at io.netty.util.concurrent.SingleThreadEventExecutor.runAllTasks(SingleThreadEventExecutor.java:470)
	at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:569)
	at io.netty.util.concurrent.SingleThreadEventExecutor$4.run(SingleThreadEventExecutor.java:997)
	at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74)
	at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30)
	at java.base/java.lang.Thread.run(Thread.java:1583)

How to Reproduce?

git clone [email protected]:beiertu-mms/quarkus-kotlin-playground.git
cd quarkus-kotlin-playground
./mvnw clean verify

Output of `uname -a` or `ver`

Linux 6.9.4-arch1-1 x86_64 GNU/Linux

Output of `java -version`

openjdk version "22" 2024-03-19

Quarkus version or git rev

3.11.2

Build tool (ie. output of `mvnw --version` or `gradlew --version`)

Apache Maven 3.9.6 (bc0240f3c744dd6b6ec2920b3cd08dcc295161ae)

Additional information

No response

The text was updated successfully, but these errors were encountered:

quarkus-bot · 2024-06-14T07:04:41Z

/cc @geoand (kotlin)

geoand · 2024-06-14T07:08:32Z

cc @yrodiere

yrodiere · 2024-06-14T07:30:12Z

Thanks for reporting.

I see you're using Hibernate Reactive, but given the nature of the problem, it's more likely a Hibernate ORM issue.

The Kotlin part makes me uneasy; I suspect your _comments.toList() may be involved in the problem if it returns a different list instance every time... So it's possible the failure is actually legitimate. I'm not very familiar with Kotlin though.

Can you reproduce this with https://github.com/hibernate/hibernate-test-case-templates/blob/main/orm/hibernate-orm-6/src/test/java/org/hibernate/bugs/QuarkusLikeORMUnitTestCase.java? Ideally in pure Java?

If so, I would suggest reporting directly through Hibernate's Jira instance, and leaving a link to that Jira here.

beiertu-mms · 2024-06-14T07:51:02Z

Thank you @yrodiere for the quick reply. Will try it out with pure Java.

beiertu-mms · 2024-06-14T16:37:30Z

@yrodiere I have refactored the code to Java, and it looks like the issue occured when I read an entity first before updating it.
So this test without a read works, but the test with a read will fail.

Strangely, switching back to Quarkus v3.10.2 will make both tests run successfully.

yrodiere · 2024-06-18T11:22:15Z

Thanks @beiertu-mms .

So, from what I see in your reproducer, this is how things go wrong:

You have a Post in your persistence context, with its comments association set to some persistent collection, containing one `Post.
You run a query with a join fetch on comments: from Post p left join fetch p.comments c where p.title = :title order by p.id
When you run that query, for some reason, Hibernate ORM/Reactive sets the comments field to a different persistent collection, but leaves the previous one in the persistence context.
When a flush finally happens, Hibernate ORM/Reactive finds out the initial persistent collection is no longer referenced anywhere, and you get this exception:

2024-06-18 13:21:04,314 ERROR [de.tun.par.PostService] (vert.x-eventloop-thread-1) Failed to register a post: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: de.tungbeier.paranche.Post.comments
	at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:98)
	at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:49)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.lambda$flushCollections$5(AbstractReactiveFlushingEventListener.java:237)
	at org.hibernate.engine.internal.StatefulPersistenceContext.forEachCollectionEntry(StatefulPersistenceContext.java:1328)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.flushCollections(AbstractReactiveFlushingEventListener.java:234)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.lambda$flushEverythingToExecutions$1(AbstractReactiveFlushingEventListener.java:103)
	at java.base/java.util.concurrent.CompletableFuture.uniAcceptNow(CompletableFuture.java:757)
	at java.base/java.util.concurrent.CompletableFuture.uniAcceptStage(CompletableFuture.java:735)
	at java.base/java.util.concurrent.CompletableFuture.thenAccept(CompletableFuture.java:2214)
	at java.base/java.util.concurrent.CompletableFuture.thenAccept(CompletableFuture.java:144)
	at org.hibernate.reactive.event.impl.AbstractReactiveFlushingEventListener.flushEverythingToExecutions(AbstractReactiveFlushingEventListener.java:92)
	at org.hibernate.reactive.event.impl.DefaultReactiveFlushEventListener.reactiveOnFlush(DefaultReactiveFlushEventListener.java:41)
	at org.hibernate.event.service.internal.EventListenerGroupImpl.lambda$fireEventOnEachListener$0(EventListenerGroupImpl.java:153)
	at java.base/java.util.concurrent.CompletableFuture.uniComposeStage(CompletableFuture.java:1187)
	at java.base/java.util.concurrent.CompletableFuture.thenCompose(CompletableFuture.java:2341)
	at java.base/java.util.concurrent.CompletableFuture.thenCompose(CompletableFuture.java:144)
	at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:153)
	at org.hibernate.reactive.session.impl.ReactiveSessionImpl.doFlush(ReactiveSessionImpl.java:982)
	at org.hibernate.reactive.session.impl.ReactiveSessionImpl.reactiveFlush(ReactiveSessionImpl.java:930)
	at io.smallrye.context.impl.wrappers.SlowContextualSupplier.get(SlowContextualSupplier.java:21)
	at io.smallrye.mutiny.operators.uni.builders.UniCreateFromCompletionStage.subscribe(UniCreateFromCompletionStage.java:24)
	at io.smallrye.mutiny.operators.AbstractUni.subscribe(AbstractUni.java:36)
	at io.smallrye.mutiny.operators.uni.UniRunSubscribeOn.lambda$subscribe$0(UniRunSubscribeOn.java:27)
	at org.hibernate.reactive.context.impl.VertxContext.execute(VertxContext.java:91)
	at io.smallrye.mutiny.operators.uni.UniRunSubscribeOn.subscribe(UniRunSubscribeOn.java:25)
        [...]

This actually looks like a bug in Hibernate Reactive... I wouldn't expect a new persistent collection to be created in case of join fetch fetching a collection that is already in the persistence context, but if it is, I would at least expect the previous persistent collection to be removed from the persistence context.

@DavideD can you please confirm and file a bug upstream?

EDIT: Also, this is not specific to Kotlin.

DavideD · 2024-06-19T07:22:01Z

Yes, it looks like a bug.
I've created this: hibernate/hibernate-reactive#1942

flyinfish · 2024-07-18T15:12:28Z

does not seem explicitly problem in hibernate-reactive, problem occurs in traditional-hibernate too

io.quarkus:quarkus-hibernate-orm:3.12.2
org.hibernate.orm:hibernate-core:6.5.2.Final

yrodiere · 2024-07-19T07:38:30Z

Similar issue on Hibernate ORM -- perhaps the same root cause, perhaps not -- https://hibernate.atlassian.net/browse/HHH-18389. On Quarkus: #7462

MarcelEdmundFranke · 2024-07-23T13:14:18Z

I am experiencing a comparable or identical issue. Following the upgrade from Spring Boot 3.2.x to 3.3.x, I encountered the following problem: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance.

Hibernate ORM core version 6.5.2.Final

MarcelEdmundFranke · 2024-07-23T14:30:17Z

I reverted to Hibernate version 6.4.9 Final, and now it is functioning correctly again.

FYI @yrodiere

beiertu-mms · 2024-09-11T15:58:08Z

This seems to have been fixed with Quarkus version >= 3.11.2.
At least my test setup here beiertu-mms/quarkus-kotlin-playground#1 is green again.

beiertu-mms added the kind/bug Something isn't working label Jun 14, 2024

quarkus-bot bot added the area/kotlin label Jun 14, 2024

geoand added the area/hibernate-orm Hibernate ORM label Jun 14, 2024

yrodiere added area/hibernate-reactive Hibernate Reactive and removed area/hibernate-orm Hibernate ORM area/kotlin labels Jun 18, 2024

DavideD mentioned this issue Jun 19, 2024

HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance hibernate/hibernate-reactive#1942

Open

yrodiere added the triage/upstream label Jun 19, 2024

MarcelEdmundFranke mentioned this issue Jul 23, 2024

Upgrade to Hibernate 6.5.2.Final spring-projects/spring-boot#40867

Closed

beiertu-mms closed this as completed Oct 25, 2024

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HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance #41198

HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance #41198

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beiertu-mms commented Sep 11, 2024

HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance #41198

HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance #41198

Comments

beiertu-mms commented Jun 14, 2024 • edited Loading

Describe the bug

Expected behavior

Actual behavior

How to Reproduce?

Output of uname -a or ver

Output of java -version

Quarkus version or git rev

Build tool (ie. output of mvnw --version or gradlew --version)

Additional information

quarkus-bot bot commented Jun 14, 2024

geoand commented Jun 14, 2024

yrodiere commented Jun 14, 2024 • edited Loading

beiertu-mms commented Jun 14, 2024

beiertu-mms commented Jun 14, 2024

yrodiere commented Jun 18, 2024 • edited Loading

DavideD commented Jun 19, 2024

flyinfish commented Jul 18, 2024

yrodiere commented Jul 19, 2024 • edited Loading

MarcelEdmundFranke commented Jul 23, 2024 • edited Loading

MarcelEdmundFranke commented Jul 23, 2024 • edited Loading

beiertu-mms commented Sep 11, 2024

beiertu-mms commented Jun 14, 2024 •

edited

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Output of `uname -a` or `ver`

Output of `java -version`

Build tool (ie. output of `mvnw --version` or `gradlew --version`)

yrodiere commented Jun 14, 2024 •

edited

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yrodiere commented Jun 18, 2024 •

edited

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yrodiere commented Jul 19, 2024 •

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MarcelEdmundFranke commented Jul 23, 2024 •

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MarcelEdmundFranke commented Jul 23, 2024 •

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