.github-ci.yml

# yamllint disable
---
#---------------------------------------------------------------------------------------------------
env:
  TEST_TIMING_OPTION: ""  # Set the option if local test should be timed or not. Default is off.
  PYTHON_PACKAGE_MANAGER: "conda"  # Python package manager to create the python environments
name: github_ci

on: [push]

jobs:
  run_tests:
    runs-on: ubuntu-latest
    container:
      image: ghcr.io/4c-multiphysics/4c:latest
      options: --user root --env OMPI_ALLOW_RUN_AS_ROOT=1 --env OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@v4
      - uses: conda-incubator/setup-miniconda@v3
      - name: build
        run: |
          sudo apt-get update
          sudo apt-get install -y rsync
          echo /home/user/4C
          # ls /home/user/4C
          # echo /home/user/4C/tests
          # ls /home/user/4C/tests
          # echo /home/user/4C/tests/input_files
          # ls /home/user/4C/tests/input_files
          # ln -s /home/user/4C/build/4C config/4C
          # ls config/
          mpirun --bind-to none -np 2 config/4C /home/user/4C/tests/input_files/solid_runtime_hex8.dat out
          /usr/bin/mpirun --bind-to none -np 2 config/4C /home/user/4C/tests/input_files/solid_runtime_hex8.dat out
          $PYTHON_PACKAGE_MANAGER env create -f environment.yml
          $PYTHON_PACKAGE_MANAGER activate queens
          pip install -e .[develop]
          $PYTHON_PACKAGE_MANAGER env export > pipeline_conda_environment.yml
          $PYTHON_PACKAGE_MANAGER list
      #- name: codechecks
        #run: |
          # $PYTHON_PACKAGE_MANAGER activate queens
         # isort --check-only queens tests > track_isort.txt 2>&1
       #   black --check queens tests > track_black.txt 2>&1
       #   pylint --rcfile=.pylintrc_ci queens tests | tee track_pylint.txt 2>&1
       #   pylint queens tests --rcfile=.pylintrc --output-format=json:pylint_warnings.json --fail-under 0
       #   python .gitlab/pipeline_utils/code_quality_creator.py pylint_warnings.json
       #   pydocstyle --match-dir='^(?!.*test).*$' queens > track_pydocstyle.txt 2>&1
      - name: tests
        run: |
          $PYTHON_PACKAGE_MANAGER activate queens
          pytest -v -m "unit_tests or integration_tests or integration_tests_fourc" --cov --cov-report=term --cov-report=html:html_coverage_report --cov-report=xml:xml_coverage_report.xml $TEST_TIMING_OPTION --color=yes --junitxml=test_junit.xml