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UBC Sunflower Genome Dataset

This is the repository holding the documentation for the UBC Sunflower Genome Dataset.

You can navigate the site on "https://rieseberglab.github.io/ubc-sunflower-genome/"

Whenever changes are committed to this repository, GitHub Pages will run Jekyll to rebuild the pages of the site, from the content in your Markdown files.

Building the page from your dev environment

  1. Once: install RVM

    # based on https://rvm.io/rvm/install .
gpg --keyserver hkp://pool.sks-keyservers.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3 7D2BAF1CF37B13E2069D6956105BD0E739499BDB
curl -sSL https://get.rvm.io | bash -s stable --ruby

  2. Once: install Ruby (> 2.1.0)

    source ~/.rvm/scripts/rvm

# this ruby version matches the one in .ruby-version
rvm install ruby-2.4.5

# set as default (optional)
rvm --default use 2.4.5

  3. Once: install additional ruby gems in your custom ruby install

    cd <repodir> && rvm use
gem install bundler
bundle install # (installs stuff from ./Gemfile)

  4. Each time: When working on the site, use the same version of ruby with the project's Gemset

    source ~/.rvm/scripts/rvm
cd <repodir> && rvm use

  5. The rest, building, deploying, is jekyll specific See https://help.github.com/en/articles/setting-up-your-github-pages-site-locally-with-jekyll

    View local site:

    `bundle exec jekyll serve`

    (this makes the site available for you to browse at localhost:4000/, and will regenerate the site when files change)