diff --git a/modules/prepare_contamination.nf b/modules/prepare_contamination.nf index f285b8a..dbe3b70 100644 --- a/modules/prepare_contamination.nf +++ b/modules/prepare_contamination.nf @@ -62,15 +62,15 @@ process check_own { path fasta output: - path '*.gz', includeInputs: true + path 'checked.fa.gz' script: """ - seqkit seq ${fasta} -o ${fasta}.gz + seqkit seq ${fasta} -o checked.fa.gz """ stub: """ - touch ${fasta}.gz + touch checked.fa.gz """ }