Test via Docker container

[hoelzer]

In case we want to add that somewhere or as a README

docker run -it --rm condaforge/mambaforge:latest /bin/bash

# rename will be needed later and is not in the minimal base image
apt-get update
apt-get install rename
 
# add repository channels for bioconda
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

# get the code and run the test
git clone https://github.com/rki-mf1/workshop-nanopore-bioinformatics.git
cd workshop-nanopore-bioinformatics
./test.sh