Nuclear segmentation mask for the original resolution images

[xinyiz98]

Hi!

Thanks for sharing the preprocessed data. I was wondering if you also have the segmentation for the images at their original resolution instead of these downsampled ones. That would be very helpful.

Alternatively, would it be possible to know where in the original images these 100x100 crops locate, e.g. the location of the top left corner in the raw images?

Thanks!

[li-li-github]

Hi, the data provided at the end of README contains segmentation, but they are not in the original resolution. There's no way to retrieve the original location of each crop. If you already have the original data, you could use cellpose pre-trained model to easily get the same (or nearly same) segmentation.