Missing figure 4

[mathieuboudreau]

@agahkarakuzu since some of your changes, Figure 4 has disapeared in my repo's build: https://rrsg2020.github.io/note

Do you have any idea why?

[mathieuboudreau]

@agahkarakuzu Seems like there's an issue finding files from my dataset,

https://github.com/rrsg2020/note/blob/02178f761d27bab02414c4be132f8a109e4d1022/reports/index.log#L549C1-L551C134

I'll revert to my old data_requirements file, as it was setup to be compatible with my notebook (in terms of folder, etc). It was still inside ../data like the previous succesful neurolibre submission, so this one should work too I'd imagine

[mathieuboudreau]

@agahkarakuzu I fixed the issue. Your updated config,

{
"src": "https://github.com/rrsg2020/analysis/releases/download/v1/rrsg-2020-neurolibre.zip",
"dst": "../data",
"projectName": "rrsg-2020-note"
}

wouldn't have worked, as after repo2data unzips from github, it would have made a folder ../data/rrsg-2020-note/rrsg-2020-neurolibre, but we need it to be ../data/rrsg-2020-neurolibre for it to be compatible with my notebook.

I revered it back to

{
"src": "https://github.com/rrsg2020/analysis/releases/download/v1/rrsg-2020-neurolibre.zip",
"dst": "../",
"projectName": "data"
}

which makes the correct directory config, and creates the folder ../data per the neurolirbe requirements

[mathieuboudreau]

Ok it's now fixed in https://rrsg2020.github.io/note/, and figure 4 has reappeared. @agahkarakuzu take special notice as to how Figure 4 (WM-Splenium) appears in this current version; it does not have a few datapoints with very large error bars, unlike the latest NRP built by NeuroLibre: https://preview.neurolibre.org/book-artifacts/rrsg2020/github.com/note/e3a349c78003181502562f5bde1dc525a69ab234/_build/_page/index/singlehtml/, which for some reason is using my old dataset and not the one I currently have in my req in this repo

[agahkarakuzu]

@mathieuboudreau

but we need it to be ../data/rrsg-2020-neurolibre for it to be compatible with my notebook.

Unfortunately we cannot do this, as that folder is already in use by the other one:

Also, if you use data for projectName, it will be under data/data/ during the notebook runtime. That projectName should be specific to this submission.

How complicated is it to make your notebooks compatible with ../data/rrsg-2020-note/rrsg-2020-neurolibre ?

For reference:

[mathieuboudreau]

Ahhh, I understand everything now - sorry about that! Yes, I'll make it work, will report back ASAP! Thanks @agahkarakuzu !

[mathieuboudreau]

Ok, should be done! Seems to work on this end!