shinyapps_io.yml

name: deploy shinyapps.io

on:
  push:
    tags:
      - 'shiny*'

jobs:
  shinyapps:

    runs-on: ubuntu-latest
    timeout-minutes: 90

    env:
      RENV_PATHS_ROOT: ~/.local/share/renv
      SHINY_ACCOUNT: ${{ secrets.SHINY_ACCOUNT }}
      SHINY_TOKEN: ${{ secrets.SHINY_TOKEN }}
      SHINY_SECRET: ${{ secrets.SHINY_SECRET }}
      
    steps:
    
      # Check out code
      - name: Checkout
        uses: actions/checkout@v3

      - name: R setup
        uses: r-lib/actions/setup-r@v2
        with:
          # don't reinstall R
          install-r: false
          # use RStudio's CRAN mirror with precompiled binaries
          use-public-rspm: true
          
      - name: Install system dependencies
        run: |
          sudo apt-get update -y
          sudo apt-get install -y libcurl4-openssl-dev
          sudo apt-get install -y libssl-dev
          sudo apt-get install -y libgsl-dev
          sudo apt-get install -y libclang-dev
    
      - name: Cache packages
        uses: actions/cache@v3
        with:
          path: ${{ env.RENV_PATHS_ROOT }}
          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
          restore-keys: |
            ${{ runner.os }}-renv-
      
      - name: Restore packages
        shell: Rscript {0}
        run: |
          if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")
          renv::restore()
        
      - name: Deploy to shinyapps.io
        run: |
          install.packages("rsconnect")
          rsconnect::setAccountInfo(name="${{secrets.SHINY_ACC_NAME}}", token="${{secrets.TOKEN}}", secret="${{secrets.SECRET}}")
          rsconnect::deployApp(appName = 'viroprofiler-viewer')
        shell: Rscript {0}