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_CancerPackages-1.Rmd
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---
title: "Cancer Packages"
output: html_notebook
---
# BCRA
https://cran.r-project.org/web/packages/BCRA/index.html
# cgdsr
cgdsr: R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
https://cran.r-project.org/web/packages/cgdsr/index.html
# TCGAbiolinksGUI
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TCGAbiolinksGUI", version = "3.8")
```
```r
browseVignettes("TCGAbiolinksGUI")
```
https://bioconductor.org/packages/release/bioc/html/TCGAbiolinksGUI.html
```r
library(TCGAbiolinksGUI)
TCGAbiolinksGUI()
```
# RTCGA
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA", version = "3.8")
```
```r
browseVignettes("RTCGA")
```
```r
RTCGA::infoTCGA()
```
# CancerSubtypes
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CancerSubtypes", version = "3.8")
```
```r
browseVignettes("CancerSubtypes")
```
# CancerMutationAnalysis
# cancerclass
# canceR
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("canceR", version = "3.8")
```
```r
browseVignettes("canceR")
```
```r
canceR::canceR()
```
# bioCancer
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bioCancer", version = "3.8")
```
```r
browseVignettes("bioCancer")
```
```r
bioCancer::bioCancer()
```
# TCGAretriever
TCGAretriever: Retrieve Genomic and Clinical Data from TCGA
https://cran.r-project.org/web/packages/TCGAretriever/index.html
# TCGA2STAT
https://cran.r-project.org/web/packages/TCGA2STAT/vignettes/TCGA2STAT.html
# TCIApathfinder
TCIApathfinder: Client for the Cancer Imaging Archive REST API
https://cran.r-project.org/web/packages/TCIApathfinder/index.html
# MILC
MILC: MIcrosimulation Lung Cancer (MILC) model
https://cran.r-project.org/web/packages/MILC/index.html
# InfiniumPurify
InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis
https://cran.r-project.org/web/packages/InfiniumPurify/index.html