From 354761294973e1fb28d4355b4c6c44414f06865e Mon Sep 17 00:00:00 2001 From: github-actions Date: Mon, 20 Jan 2025 02:54:27 +0000 Subject: [PATCH] Automated deployment to update containers 2025-01-20 --- .../bioconductor-mpac/container.yaml | 26 +++++++++ .../bioconductor-omicsmlrepor/container.yaml | 16 ++++++ .../bioconductor-piuma/container.yaml | 29 ++++++++++ .../bioconductor-rblast/container.yaml | 25 +++++++++ .../bioconductor-scdotplot/container.yaml | 29 ++++++++++ .../bioconductor-spillr/container.yaml | 27 +++++++++ .../bioconductor-stabmap/container.yaml | 26 +++++++++ .../bioconductor-tidycoverage/container.yaml | 25 +++++++++ .../bioconductor-tidyomics/container.yaml | 29 ++++++++++ .../container.yaml | 35 ++++++++++++ .../bioconductor-treeclimbr/container.yaml | 27 +++++++++ .../bioconductor-visiumio/container.yaml | 35 ++++++++++++ .../excludonfinder/container.yaml | 55 +++++++++++++++++++ quay.io/biocontainers/memopair/container.yaml | 10 ++++ quay.io/biocontainers/msoma/container.yaml | 36 ++++++++++++ quay.io/biocontainers/octopusv/container.yaml | 36 ++++++++++++ .../primalbedtools/container.yaml | 14 +++++ .../biocontainers/r-scroshi/container.yaml | 25 +++++++++ .../biocontainers/rust-gtars/container.yaml | 10 ++++ quay.io/biocontainers/saqc/container.yaml | 36 ++++++++++++ 20 files changed, 551 insertions(+) create mode 100644 quay.io/biocontainers/bioconductor-mpac/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-omicsmlrepor/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-piuma/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-rblast/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-scdotplot/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-spillr/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-stabmap/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-tidycoverage/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-tidyomics/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-tidyspatialexperiment/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-treeclimbr/container.yaml create mode 100644 quay.io/biocontainers/bioconductor-visiumio/container.yaml create mode 100644 quay.io/biocontainers/excludonfinder/container.yaml create mode 100644 quay.io/biocontainers/memopair/container.yaml create mode 100644 quay.io/biocontainers/msoma/container.yaml create mode 100644 quay.io/biocontainers/octopusv/container.yaml create mode 100644 quay.io/biocontainers/primalbedtools/container.yaml create mode 100644 quay.io/biocontainers/r-scroshi/container.yaml create mode 100644 quay.io/biocontainers/rust-gtars/container.yaml create mode 100644 quay.io/biocontainers/saqc/container.yaml diff --git a/quay.io/biocontainers/bioconductor-mpac/container.yaml b/quay.io/biocontainers/bioconductor-mpac/container.yaml new file mode 100644 index 000000000000..52548e136c83 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-mpac/container.yaml @@ -0,0 +1,26 @@ +url: https://biocontainers.pro/tools/bioconductor-mpac +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-mpac +latest: + 1.0.0--r44hdfd78af_0: sha256:456c25b1a9f0eaab40fca5aefd8bf10f09f4f88a21e279c42ccf4b4be86b6ce9 +tags: + 1.0.0--r44hdfd78af_0: sha256:456c25b1a9f0eaab40fca5aefd8bf10f09f4f88a21e279c42ccf4b4be86b6ce9 +docker: quay.io/biocontainers/bioconductor-mpac +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-omicsmlrepor/container.yaml b/quay.io/biocontainers/bioconductor-omicsmlrepor/container.yaml new file mode 100644 index 000000000000..8192d4979793 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-omicsmlrepor/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/bioconductor-omicsmlrepor +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-omicsmlrepor +latest: + 1.0.0--r44hdfd78af_0: sha256:e7f84ca125f1e91f42d64a8813feb779d1f11b3398ee89d6ae0839f7bf7a01f6 +tags: + 1.0.0--r44hdfd78af_0: sha256:e7f84ca125f1e91f42d64a8813feb779d1f11b3398ee89d6ae0839f7bf7a01f6 +docker: quay.io/biocontainers/bioconductor-omicsmlrepor +aliases: + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + glpsol: /usr/local/bin/glpsol + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-piuma/container.yaml b/quay.io/biocontainers/bioconductor-piuma/container.yaml new file mode 100644 index 000000000000..60a6c6236e40 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-piuma/container.yaml @@ -0,0 +1,29 @@ +url: https://biocontainers.pro/tools/bioconductor-piuma +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-piuma +latest: + 1.2.0--r44hdfd78af_0: sha256:0b66be812af64afeb735b75cb01e38a78662a3d9f4f39d7e14fae9106235f6a7 +tags: + 1.2.0--r44hdfd78af_0: sha256:0b66be812af64afeb735b75cb01e38a78662a3d9f4f39d7e14fae9106235f6a7 +docker: quay.io/biocontainers/bioconductor-piuma +aliases: + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-rblast/container.yaml b/quay.io/biocontainers/bioconductor-rblast/container.yaml new file mode 100644 index 000000000000..9c78de73be3e --- /dev/null +++ b/quay.io/biocontainers/bioconductor-rblast/container.yaml @@ -0,0 +1,25 @@ +url: https://biocontainers.pro/tools/bioconductor-rblast +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-rblast +latest: + 1.2.0--r44hdfd78af_0: sha256:db6e522875fe1e74806d8e279319ac6dff8ba9d46f1d12d3386619b29a397ba3 +tags: + 1.2.0--r44hdfd78af_0: sha256:db6e522875fe1e74806d8e279319ac6dff8ba9d46f1d12d3386619b29a397ba3 +docker: quay.io/biocontainers/bioconductor-rblast +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-scdotplot/container.yaml b/quay.io/biocontainers/bioconductor-scdotplot/container.yaml new file mode 100644 index 000000000000..06d2eb2c52eb --- /dev/null +++ b/quay.io/biocontainers/bioconductor-scdotplot/container.yaml @@ -0,0 +1,29 @@ +url: https://biocontainers.pro/tools/bioconductor-scdotplot +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-scdotplot +latest: + 1.0.0--r44hdfd78af_0: sha256:5c242bd18f9fb721f746efc8d05d35b33e29c957f0368311293ce21bd795298c +tags: + 1.0.0--r44hdfd78af_0: sha256:5c242bd18f9fb721f746efc8d05d35b33e29c957f0368311293ce21bd795298c +docker: quay.io/biocontainers/bioconductor-scdotplot +aliases: + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-spillr/container.yaml b/quay.io/biocontainers/bioconductor-spillr/container.yaml new file mode 100644 index 000000000000..8eacdcdfcdf4 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-spillr/container.yaml @@ -0,0 +1,27 @@ +url: https://biocontainers.pro/tools/bioconductor-spillr +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-spillr +latest: + 1.2.0--r44hdfd78af_0: sha256:0483431d74e11a2545ef334713ae9aea614f4ef19fa76f31bdba38c18253a5fd +tags: + 1.2.0--r44hdfd78af_0: sha256:0483431d74e11a2545ef334713ae9aea614f4ef19fa76f31bdba38c18253a5fd +docker: quay.io/biocontainers/bioconductor-spillr +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-stabmap/container.yaml b/quay.io/biocontainers/bioconductor-stabmap/container.yaml new file mode 100644 index 000000000000..500a920fdd35 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-stabmap/container.yaml @@ -0,0 +1,26 @@ +url: https://biocontainers.pro/tools/bioconductor-stabmap +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-stabmap +latest: + 1.0.0--r44hdfd78af_0: sha256:3828893bf8cfd99bb001d9537ab23bcd3484c5f85a194bc07235ac0b84ed4a15 +tags: + 1.0.0--r44hdfd78af_0: sha256:3828893bf8cfd99bb001d9537ab23bcd3484c5f85a194bc07235ac0b84ed4a15 +docker: quay.io/biocontainers/bioconductor-stabmap +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-tidycoverage/container.yaml b/quay.io/biocontainers/bioconductor-tidycoverage/container.yaml new file mode 100644 index 000000000000..bc010d14b3a0 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-tidycoverage/container.yaml @@ -0,0 +1,25 @@ +url: https://biocontainers.pro/tools/bioconductor-tidycoverage +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-tidycoverage +latest: + 1.2.0--r44hdfd78af_0: sha256:0c5fd1160c594ac4b4b2a01636b0cae0402b9a1dc63be745df1780486c1e9401 +tags: + 1.2.0--r44hdfd78af_0: sha256:0c5fd1160c594ac4b4b2a01636b0cae0402b9a1dc63be745df1780486c1e9401 +docker: quay.io/biocontainers/bioconductor-tidycoverage +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-tidyomics/container.yaml b/quay.io/biocontainers/bioconductor-tidyomics/container.yaml new file mode 100644 index 000000000000..58bfb14e246e --- /dev/null +++ b/quay.io/biocontainers/bioconductor-tidyomics/container.yaml @@ -0,0 +1,29 @@ +url: https://biocontainers.pro/tools/bioconductor-tidyomics +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-tidyomics +latest: + 1.2.0--r44hdfd78af_0: sha256:9f3cb312736fb6aedfc255e9a1207f1bac8bf0a809edde39e97adaae462e826f +tags: + 1.2.0--r44hdfd78af_0: sha256:9f3cb312736fb6aedfc255e9a1207f1bac8bf0a809edde39e97adaae462e826f +docker: quay.io/biocontainers/bioconductor-tidyomics +aliases: + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-tidyspatialexperiment/container.yaml b/quay.io/biocontainers/bioconductor-tidyspatialexperiment/container.yaml new file mode 100644 index 000000000000..17b85a8e2595 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-tidyspatialexperiment/container.yaml @@ -0,0 +1,35 @@ +url: https://biocontainers.pro/tools/bioconductor-tidyspatialexperiment +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-tidyspatialexperiment +latest: + 1.2.0--r44hdfd78af_0: sha256:26452e9d68b85393148f9e0a7c0aaf0dfe4834cba144ebd5ae2746a58ce59e91 +tags: + 1.2.0--r44hdfd78af_0: sha256:26452e9d68b85393148f9e0a7c0aaf0dfe4834cba144ebd5ae2746a58ce59e91 +docker: quay.io/biocontainers/bioconductor-tidyspatialexperiment +aliases: + dec265: /usr/local/bin/dec265 + x265: /usr/local/bin/x265 + rav1e: /usr/local/bin/rav1e + SvtAv1EncApp: /usr/local/bin/SvtAv1EncApp + dav1d: /usr/local/bin/dav1d + aomdec: /usr/local/bin/aomdec + aomenc: /usr/local/bin/aomenc + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + x86_64-conda-linux-gnu-pkg-config: /usr/local/bin/x86_64-conda-linux-gnu-pkg-config + Magick++-config: /usr/local/bin/Magick++-config + MagickCore-config: /usr/local/bin/MagickCore-config + MagickWand-config: /usr/local/bin/MagickWand-config + animate: /usr/local/bin/animate + composite: /usr/local/bin/composite + conjure: /usr/local/bin/conjure + display: /usr/local/bin/display + identify: /usr/local/bin/identify + import: /usr/local/bin/import + magick: /usr/local/bin/magick + magick-script: /usr/local/bin/magick-script diff --git a/quay.io/biocontainers/bioconductor-treeclimbr/container.yaml b/quay.io/biocontainers/bioconductor-treeclimbr/container.yaml new file mode 100644 index 000000000000..a033b6cdfc8a --- /dev/null +++ b/quay.io/biocontainers/bioconductor-treeclimbr/container.yaml @@ -0,0 +1,27 @@ +url: https://biocontainers.pro/tools/bioconductor-treeclimbr +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-treeclimbr +latest: + 1.2.0--r44hdfd78af_0: sha256:f609b52ee4fb6584139449e14c022ae35489c3359e7819eca87e0b66e1c4fcf4 +tags: + 1.2.0--r44hdfd78af_0: sha256:f609b52ee4fb6584139449e14c022ae35489c3359e7819eca87e0b66e1c4fcf4 +docker: quay.io/biocontainers/bioconductor-treeclimbr +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + glpsol: /usr/local/bin/glpsol + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/bioconductor-visiumio/container.yaml b/quay.io/biocontainers/bioconductor-visiumio/container.yaml new file mode 100644 index 000000000000..831e9d1cbb10 --- /dev/null +++ b/quay.io/biocontainers/bioconductor-visiumio/container.yaml @@ -0,0 +1,35 @@ +url: https://biocontainers.pro/tools/bioconductor-visiumio +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-visiumio +latest: + 1.2.0--r44hdfd78af_0: sha256:7935cfc2d1cd33e125d2105a40cf10fb752a3e2a0a2281c58dc0e3204fb5738a +tags: + 1.2.0--r44hdfd78af_0: sha256:7935cfc2d1cd33e125d2105a40cf10fb752a3e2a0a2281c58dc0e3204fb5738a +docker: quay.io/biocontainers/bioconductor-visiumio +aliases: + dec265: /usr/local/bin/dec265 + x265: /usr/local/bin/x265 + rav1e: /usr/local/bin/rav1e + SvtAv1EncApp: /usr/local/bin/SvtAv1EncApp + dav1d: /usr/local/bin/dav1d + aomdec: /usr/local/bin/aomdec + aomenc: /usr/local/bin/aomenc + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + x86_64-conda-linux-gnu-pkg-config: /usr/local/bin/x86_64-conda-linux-gnu-pkg-config + Magick++-config: /usr/local/bin/Magick++-config + MagickCore-config: /usr/local/bin/MagickCore-config + MagickWand-config: /usr/local/bin/MagickWand-config + animate: /usr/local/bin/animate + composite: /usr/local/bin/composite + conjure: /usr/local/bin/conjure + display: /usr/local/bin/display + identify: /usr/local/bin/identify + import: /usr/local/bin/import + magick: /usr/local/bin/magick + magick-script: /usr/local/bin/magick-script + mogrify: /usr/local/bin/mogrify + montage: /usr/local/bin/montage diff --git a/quay.io/biocontainers/excludonfinder/container.yaml b/quay.io/biocontainers/excludonfinder/container.yaml new file mode 100644 index 000000000000..3e669e30a08d --- /dev/null +++ b/quay.io/biocontainers/excludonfinder/container.yaml @@ -0,0 +1,55 @@ +url: https://biocontainers.pro/tools/excludonfinder +maintainer: '@vsoch' +description: singularity registry hpc automated addition for excludonfinder +latest: + 0.1.1--hdfd78af_0: sha256:dfd37d1b78b37246aac808f45e247edadf3e2124eaef98d2a23d14d7de69154b +tags: + 0.1.1--hdfd78af_0: sha256:dfd37d1b78b37246aac808f45e247edadf3e2124eaef98d2a23d14d7de69154b +docker: quay.io/biocontainers/excludonfinder +aliases: + ExcludonFinder: /usr/local/bin/ExcludonFinder + bwa-mem2: /usr/local/bin/bwa-mem2 + bwa-mem2.avx: /usr/local/bin/bwa-mem2.avx + bwa-mem2.avx2: /usr/local/bin/bwa-mem2.avx2 + bwa-mem2.avx512bw: /usr/local/bin/bwa-mem2.avx512bw + bwa-mem2.sse41: /usr/local/bin/bwa-mem2.sse41 + bwa-mem2.sse42: /usr/local/bin/bwa-mem2.sse42 + exactSNP: /usr/local/bin/exactSNP + featureCounts: /usr/local/bin/featureCounts + flattenGTF: /usr/local/bin/flattenGTF + genRandomReads: /usr/local/bin/genRandomReads + propmapped: /usr/local/bin/propmapped + qualityScores: /usr/local/bin/qualityScores + removeDup: /usr/local/bin/removeDup + repair: /usr/local/bin/repair + subindel: /usr/local/bin/subindel + subjunc: /usr/local/bin/subjunc + sublong: /usr/local/bin/sublong + subread-align: /usr/local/bin/subread-align + subread-buildindex: /usr/local/bin/subread-buildindex + subread-fullscan: /usr/local/bin/subread-fullscan + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + annot-tsv: /usr/local/bin/annot-tsv + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + parsort: /usr/local/bin/parsort + env_parallel: /usr/local/bin/env_parallel + env_parallel.ash: /usr/local/bin/env_parallel.ash + env_parallel.bash: /usr/local/bin/env_parallel.bash + env_parallel.csh: /usr/local/bin/env_parallel.csh + env_parallel.dash: /usr/local/bin/env_parallel.dash + env_parallel.fish: /usr/local/bin/env_parallel.fish + env_parallel.ksh: /usr/local/bin/env_parallel.ksh + env_parallel.mksh: /usr/local/bin/env_parallel.mksh + env_parallel.pdksh: /usr/local/bin/env_parallel.pdksh + env_parallel.sh: /usr/local/bin/env_parallel.sh + env_parallel.tcsh: /usr/local/bin/env_parallel.tcsh + env_parallel.zsh: /usr/local/bin/env_parallel.zsh + niceload: /usr/local/bin/niceload + parcat: /usr/local/bin/parcat + parset: /usr/local/bin/parset + sem: /usr/local/bin/sem + sql: /usr/local/bin/sql + parallel: /usr/local/bin/parallel diff --git a/quay.io/biocontainers/memopair/container.yaml b/quay.io/biocontainers/memopair/container.yaml new file mode 100644 index 000000000000..23cd600c38e1 --- /dev/null +++ b/quay.io/biocontainers/memopair/container.yaml @@ -0,0 +1,10 @@ +url: https://biocontainers.pro/tools/memopair +maintainer: '@vsoch' +description: singularity registry hpc automated addition for memopair +latest: + 0.1.5--h4349ce8_0: sha256:3d23547407241f4dd5c822db78e152e3e220cc8ebc1c424bc35c726f73254ff5 +tags: + 0.1.5--h4349ce8_0: sha256:3d23547407241f4dd5c822db78e152e3e220cc8ebc1c424bc35c726f73254ff5 +docker: quay.io/biocontainers/memopair +aliases: + memopair: /usr/local/bin/memopair diff --git a/quay.io/biocontainers/msoma/container.yaml b/quay.io/biocontainers/msoma/container.yaml new file mode 100644 index 000000000000..4f39ceb22249 --- /dev/null +++ b/quay.io/biocontainers/msoma/container.yaml @@ -0,0 +1,36 @@ +url: https://biocontainers.pro/tools/msoma +maintainer: '@vsoch' +description: singularity registry hpc automated addition for msoma +latest: + 0.1.0--pyhdfd78af_0: sha256:b95386a3f3e31bd2edf992e9ffc026894d5aca9978ac2dc099abcd99fac0bde1 +tags: + 0.1.0--pyhdfd78af_0: sha256:b95386a3f3e31bd2edf992e9ffc026894d5aca9978ac2dc099abcd99fac0bde1 +docker: quay.io/biocontainers/msoma +aliases: + bam: /usr/local/bin/bam + msoma: /usr/local/bin/msoma + pandoc-lua: /usr/local/bin/pandoc-lua + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc-server: /usr/local/bin/pandoc-server + annot-tsv: /usr/local/bin/annot-tsv + numpy-config: /usr/local/bin/numpy-config + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + fasta-sanitize.pl: /usr/local/bin/fasta-sanitize.pl + plot-ampliconstats: /usr/local/bin/plot-ampliconstats + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + ace2sam: /usr/local/bin/ace2sam + blast2sam.pl: /usr/local/bin/blast2sam.pl diff --git a/quay.io/biocontainers/octopusv/container.yaml b/quay.io/biocontainers/octopusv/container.yaml new file mode 100644 index 000000000000..d7c11ff7a36b --- /dev/null +++ b/quay.io/biocontainers/octopusv/container.yaml @@ -0,0 +1,36 @@ +url: https://biocontainers.pro/tools/octopusv +maintainer: '@vsoch' +description: singularity registry hpc automated addition for octopusv +latest: + 0.1.0--pyhdfd78af_0: sha256:be8ff2e9e70dafce30069526974378aaa3b7da6d37d9df91d8c28b49cd684c17 +tags: + 0.1.0--pyhdfd78af_0: sha256:be8ff2e9e70dafce30069526974378aaa3b7da6d37d9df91d8c28b49cd684c17 +docker: quay.io/biocontainers/octopusv +aliases: + octopusv: /usr/local/bin/octopusv + typer: /usr/local/bin/typer + coverage: /usr/local/bin/coverage + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + markdown-it: /usr/local/bin/markdown-it + numpy-config: /usr/local/bin/numpy-config + py.test: /usr/local/bin/py.test + pytest: /usr/local/bin/pytest + natsort: /usr/local/bin/natsort + pygmentize: /usr/local/bin/pygmentize + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + tjbench: /usr/local/bin/tjbench + opj_compress: /usr/local/bin/opj_compress + opj_decompress: /usr/local/bin/opj_decompress diff --git a/quay.io/biocontainers/primalbedtools/container.yaml b/quay.io/biocontainers/primalbedtools/container.yaml new file mode 100644 index 000000000000..3ab841d6bfa7 --- /dev/null +++ b/quay.io/biocontainers/primalbedtools/container.yaml @@ -0,0 +1,14 @@ +url: https://biocontainers.pro/tools/primalbedtools +maintainer: '@vsoch' +description: singularity registry hpc automated addition for primalbedtools +latest: + 0.6.2--pyhdfd78af_0: sha256:47428c46e378db2f66cd4f229df511abdbb8cb2fb5c7309fee42db3bf616a730 +tags: + 0.6.2--pyhdfd78af_0: sha256:47428c46e378db2f66cd4f229df511abdbb8cb2fb5c7309fee42db3bf616a730 +docker: quay.io/biocontainers/primalbedtools +aliases: + primalbedtools: /usr/local/bin/primalbedtools + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config diff --git a/quay.io/biocontainers/r-scroshi/container.yaml b/quay.io/biocontainers/r-scroshi/container.yaml new file mode 100644 index 000000000000..4a6e3a5e094c --- /dev/null +++ b/quay.io/biocontainers/r-scroshi/container.yaml @@ -0,0 +1,25 @@ +url: https://biocontainers.pro/tools/r-scroshi +maintainer: '@vsoch' +description: singularity registry hpc automated addition for r-scroshi +latest: + 1.0.0.0--r44h3121a25_0: sha256:be29951ad6fadb9dda8d2017a0deb7a4083e292dd1aea57f82145818fd30b0cb +tags: + 1.0.0.0--r44h3121a25_0: sha256:be29951ad6fadb9dda8d2017a0deb7a4083e292dd1aea57f82145818fd30b0cb +docker: quay.io/biocontainers/r-scroshi +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + hb-info: /usr/local/bin/hb-info + activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/rust-gtars/container.yaml b/quay.io/biocontainers/rust-gtars/container.yaml new file mode 100644 index 000000000000..148d256798b1 --- /dev/null +++ b/quay.io/biocontainers/rust-gtars/container.yaml @@ -0,0 +1,10 @@ +url: https://biocontainers.pro/tools/rust-gtars +maintainer: '@vsoch' +description: singularity registry hpc automated addition for rust-gtars +latest: + 0.2.0--h4349ce8_1: sha256:74c31e3f586b159c0a5b9a839a37d2c2878644f9e5b25974ba4c25394397c3c7 +tags: + 0.2.0--h4349ce8_1: sha256:74c31e3f586b159c0a5b9a839a37d2c2878644f9e5b25974ba4c25394397c3c7 +docker: quay.io/biocontainers/rust-gtars +aliases: + gtars: /usr/local/bin/gtars diff --git a/quay.io/biocontainers/saqc/container.yaml b/quay.io/biocontainers/saqc/container.yaml new file mode 100644 index 000000000000..6aea12f5e60a --- /dev/null +++ b/quay.io/biocontainers/saqc/container.yaml @@ -0,0 +1,36 @@ +url: https://biocontainers.pro/tools/saqc +maintainer: '@vsoch' +description: singularity registry hpc automated addition for saqc +latest: + 2.4.1: sha256:4508837687c7239c1628bfdadc7e6e6a986faa04fc2ab3270602f04d29c872f8 +tags: + 2.4.1: sha256:4508837687c7239c1628bfdadc7e6e6a986faa04fc2ab3270602f04d29c872f8 +docker: quay.io/biocontainers/saqc +aliases: + protoc-25.1.0: /usr/local/bin/protoc-25.1.0 + saqc: /usr/local/bin/saqc + genl-ctrl-list: /usr/local/bin/genl-ctrl-list + idiag-socket-details: /usr/local/bin/idiag-socket-details + nf-ct-add: /usr/local/bin/nf-ct-add + nf-ct-events: /usr/local/bin/nf-ct-events + nf-ct-list: /usr/local/bin/nf-ct-list + nf-exp-add: /usr/local/bin/nf-exp-add + nf-exp-delete: /usr/local/bin/nf-exp-delete + nf-exp-list: /usr/local/bin/nf-exp-list + nf-log: /usr/local/bin/nf-log + nf-monitor: /usr/local/bin/nf-monitor + nf-queue: /usr/local/bin/nf-queue + nl-addr-add: /usr/local/bin/nl-addr-add + nl-addr-delete: /usr/local/bin/nl-addr-delete + nl-addr-list: /usr/local/bin/nl-addr-list + nl-class-add: /usr/local/bin/nl-class-add + nl-class-delete: /usr/local/bin/nl-class-delete + nl-class-list: /usr/local/bin/nl-class-list + nl-classid-lookup: /usr/local/bin/nl-classid-lookup + nl-cls-add: /usr/local/bin/nl-cls-add + nl-cls-delete: /usr/local/bin/nl-cls-delete + nl-cls-list: /usr/local/bin/nl-cls-list + nl-fib-lookup: /usr/local/bin/nl-fib-lookup + nl-link-enslave: /usr/local/bin/nl-link-enslave + nl-link-ifindex2name: /usr/local/bin/nl-link-ifindex2name + nl-link-list: /usr/local/bin/nl-link-list