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PTM annotation in the final results #124

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douweschulte opened this issue Dec 8, 2021 · 2 comments
Open

PTM annotation in the final results #124

douweschulte opened this issue Dec 8, 2021 · 2 comments
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A-html-report Area: Related to the HTML output report M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.

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@douweschulte
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In GitLab by @nonnominandus on Jul 16, 2021, 17:37

It would be great if all found PTMs plus possible ones could be annotated in the result HTML. Of course this would include glycosylation sites but could be implemented in a broader way.
@douweschulte douweschulte added the A-html-report Area: Related to the HTML output report label Dec 8, 2021
@douweschulte douweschulte added this to the Nice to haves milestone Dec 8, 2021
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In GitLab by @nonnominandus on Nov 16, 2021, 15:17

Possible glycosylation could be detected based on the following rules: https://www.uniprot.org/help/carbohyd

@douweschulte douweschulte removed this from the Nice to haves milestone Dec 14, 2021
@douweschulte douweschulte added the M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation. label Jan 16, 2023
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I think it would be quite nice if there would be a button above the read align 'show modifications' which would highlight all modifications in all peptides. Possibly it would colour the modified position in red, or some other indication. One downside is that the readalign html will need an additional layer of span's and that the modifications will need to be tracked throughout the program.

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A-html-report Area: Related to the HTML output report M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
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