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image preprocessing #10

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dalessioluca opened this issue Apr 30, 2020 · 4 comments
Closed

image preprocessing #10

dalessioluca opened this issue Apr 30, 2020 · 4 comments

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@dalessioluca
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check:

  1. https://arxiv.org/abs/1812.10366
  2. http://bigwww.epfl.ch/algorithms/denoise/
@dalessioluca
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This is related to issue #7

@dalessioluca
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Do Otsu on the image and add a cross entropy loss between fg_mask and otsu_mask this can be simply added as a regularization in the dictionary

@dalessioluca
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Since I am going to use a non-physical log-likelihood (i.e. it is not the correct poisson-gaussian model) then I am allowed to do non-linear transformations to enhance the image.

I have found out that:

  1. remove background with otsu
  2. rescale fg_intensity in (0,1) (this is linear transformation)
  3. use adaptive_hist_equalization to enhance local contrast.
    tmp_MAIN.pdf

@dalessioluca
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in pull request #29 preprocessing has been fixed

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