diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 00000000..5008ddfc Binary files /dev/null and b/.DS_Store differ diff --git a/data/default/explore-data/genomes.tsv b/data/Current_Genomes.tsv similarity index 100% rename from data/default/explore-data/genomes.tsv rename to data/Current_Genomes.tsv diff --git a/data/Current_Genomes_original.tsv b/data/Current_Genomes_original.tsv new file mode 100644 index 00000000..17da3b7f --- /dev/null +++ b/data/Current_Genomes_original.tsv @@ -0,0 +1,319 @@ +Organism Proteome_ID Assembly Annotation Common Name Euk. BUSCO % Emb. BUSCO % Data Usage Policy +Acorus americanus v1.1 (https://phytozome-next.jgi.doe.gov/info/Aamericanus_v1_1) 586 JGI JGI sweetflag 98.0 94.2 restricted +Agave tequilana var. Weber's Blue HAP1 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atequilanavar_WebersBlueHAP1_v2_1) 790 JGI JGI Weber's Blue agave 98.3 97.0 restricted +Agave tequilana var. Weber's Blue HAP2 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atequilanavar_WebersBlueHAP2_v2_1) 791 JGI JGI Weber's Blue agave 98.3 97.4 restricted +Alyssum linifolium v1.1 (https://phytozome-next.jgi.doe.gov/info/Alinifolium_v1_1) 472 JGI JGI 98.7 98.5 restricted +Amaranthus hypochondriacus v2.1 (https://phytozome-next.jgi.doe.gov/info/Ahypochondriacus_v2_1) 459 BYU BYU grain amaranth 91.7 77.6 unrestricted +Amborella trichopoda v1.0 (https://phytozome-next.jgi.doe.gov/info/Atrichopoda_v1_0) 291 AGP AGP amborella 94.4 84.5 unrestricted +Amborella trichopoda var. SantaCruz_75 HAP1 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atrichopodavar_SantaCruz_75HAP1_v2_1) 727 JGI JGI 99.0 93.5 restricted +Amborella trichopoda var. SantaCruz_75 HAP2 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atrichopodavar_SantaCruz_75HAP2_v2_1) 728 JGI JGI 99.0 94.0 restricted +Anacardium occidentale v0.9 (https://phytozome-next.jgi.doe.gov/info/Aoccidentale_v0_9) 449 JGI JGI cashew 96.7 91.1 restricted +Ananas comosus v3 (https://phytozome-next.jgi.doe.gov/info/Acomosus_v3) 321 FAFU/UIUC FAFU/UIUC pineapple 92.1 89.3 unrestricted +Andropogon gerardi HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/AgerardiHAP1_v1_1) 783 JGI JGI Big bluestem 98.7 99.7 restricted +Andropogon gerardi HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/AgerardiHAP2_v1_1) 784 JGI JGI Big bluestem 98.7 99.7 restricted +Aquilegia coerulea v3.1 (https://phytozome-next.jgi.doe.gov/info/Acoerulea_v3_1) 322 JGI JGI Colorado blue columbine 98.7 95.8 unrestricted +Arabidopsis halleri v1.1 (https://phytozome-next.jgi.doe.gov/info/Ahalleri_v1_1) 264 JGI JGI 89.4 85.9 restricted +Arabidopsis halleri v2.1.0 (https://phytozome-next.jgi.doe.gov/info/Ahalleri_v2_1_0) 765 MPIB MGPP-RUB 98.3 94.0 unrestricted +Arabidopsis lyrata v2.1 (https://phytozome-next.jgi.doe.gov/info/Alyrata_v2_1) 384 JGI MPIPZ Lyrate rockcress 98.0 98.2 unrestricted +Arabidopsis thaliana TAIR10 (https://phytozome-next.jgi.doe.gov/info/Athaliana_TAIR10) 167 TAIR TAIR thale cress 99.0 99.3 unrestricted +Arabidopsis thaliana Araport11 (https://phytozome-next.jgi.doe.gov/info/Athaliana_Araport11) 447 TAIR Araport thale cress 98.7 99.3 unrestricted +Arachis hypogaea v1.0 (https://phytozome-next.jgi.doe.gov/info/Ahypogaea_v1_0) 530 PeanutBase PeanutBase peanut 97.0 92.8 unrestricted +Asparagus officinalis V1.1 (https://phytozome-next.jgi.doe.gov/info/Aofficinalis_V1_1) 498 UGA UGA garden asparagus 88.8 79.0 unrestricted +Beta vulgaris EL10_1.0 (https://phytozome-next.jgi.doe.gov/info/Bvulgaris_EL10_1_0) 548 MSU MSU beet 94.7 89.2 unrestricted +Beta vulgaris ssp. vulgaris EL10.2_2 (https://phytozome-next.jgi.doe.gov/info/Bvulgarisssp_vulgaris_EL10_2_2) 782 USDA JGI sugar beet EL10 96.7 92.2 unrestricted +Betula platyphylla v1.1 (https://phytozome-next.jgi.doe.gov/info/Bplatyphylla_v1_1) 679 NEFU NEFU Asian white birch 93.7 92.4 unrestricted +Boechera stricta v1.2 (https://phytozome-next.jgi.doe.gov/info/Bstricta_v1_2) 278 JGI JGI Drummond's rockcress 96.0 97.4 unrestricted +Botryococcus braunii v2.1 (https://phytozome-next.jgi.doe.gov/info/Bbraunii_v2_1) 502 JGI JGI 80.5 22.6 restricted +Brachypodium arbuscula BARB1 v3.1 (https://phytozome-next.jgi.doe.gov/info/BarbusculaBARB1_v3_1) 720 JGI JGI 98.3 99.0 restricted +Brachypodium distachyon v3.1 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v3_1) 314 JGI JGI purple false brome 98.3 98.6 unrestricted +Brachypodium distachyon v2.1 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v2_1) 283 JGI JGI purple false brome 98.3 98.3 unrestricted +Brachypodium distachyon v3.2 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v3_2) 556 JGI JGI purple false brome 98.3 99.3 restricted +Brachypodium distachyon ABR2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR2_v1) 337 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon ABR3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR3_v1) 343 JGI JGI purple false brome 98.7 97.4 unrestricted +Brachypodium distachyon ABR4 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR4_v1) 364 JGI JGI purple false brome 97.7 97.2 unrestricted +Brachypodium distachyon ABR5 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR5_v1) 379 JGI JGI purple false brome 97.4 96.4 unrestricted +Brachypodium distachyon ABR6 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR6_v1) 336 JGI JGI purple false brome 98.0 97.9 unrestricted +Brachypodium distachyon ABR7 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR7_v1) 369 JGI JGI purple false brome 97.7 98.1 unrestricted +Brachypodium distachyon ABR8 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR8_v1) 356 JGI JGI purple false brome 93.1 91.5 unrestricted +Brachypodium distachyon ABR9 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR9_v1) 333 JGI JGI purple false brome 97.7 96.8 unrestricted +Brachypodium distachyon Adi-10 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_10_v1) 381 JGI JGI purple false brome 94.4 84.7 unrestricted +Brachypodium distachyon Adi-12 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_12_v1) 359 JGI JGI purple false brome 96.7 95.8 unrestricted +Brachypodium distachyon Adi-2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_2_v1) 372 JGI JGI purple false brome 98.0 97.6 unrestricted +Brachypodium distachyon Arn1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonArn1_v1) 355 JGI JGI purple false brome 97.4 97.8 unrestricted +Brachypodium distachyon Bd1-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd1_1_v1) 349 JGI JGI purple false brome 94.1 96.1 unrestricted +Brachypodium distachyon Bd1-1 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd1_1_v1_1) 549 JGI JGI purple false brome 98.7 99.4 restricted +Brachypodium distachyon Bd18-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd18_1_v1) 362 JGI JGI purple false brome 98.0 98.4 unrestricted +Brachypodium distachyon Bd2-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd2_3_v1) 353 JGI JGI purple false brome 97.7 95.4 unrestricted +Brachypodium distachyon Bd21 AnntCtrl v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21AnntCtrl_v1) 331 JGI JGI purple false brome 97.7 98.1 unrestricted +Brachypodium distachyon Bd21 AsmbCtrl v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21AsmbCtrl_v1) 361 JGI JGI purple false brome 97.7 97.1 unrestricted +Brachypodium distachyon Bd21-3 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1_1) 460 JGI JGI purple false brome 98.0 98.0 restricted +Brachypodium distachyon Bd21-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1) 378 JGI JGI purple false brome 97.4 96.7 unrestricted +Brachypodium distachyon Bd21-3 v1.2 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1_2) 537 JGI JGI purple false brome 98.3 99.0 restricted +Brachypodium distachyon Bd29-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd29_1_v1) 346 JGI JGI purple false brome 94.7 93.6 unrestricted +Brachypodium distachyon Bd3-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd3_1_v1) 328 JGI JGI purple false brome 86.8 85.6 unrestricted +Brachypodium distachyon Bd30-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd30_1_v1) 344 JGI JGI purple false brome 97.0 96.0 unrestricted +Brachypodium distachyon Bd30-1 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd30_1_v1_1) 515 JGI JGI purple false brome 98.1 98.1 restricted +Brachypodium distachyon BdTR10c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR10c_v1) 374 JGI JGI purple false brome 97.0 93.3 unrestricted +Brachypodium distachyon BdTR11a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11a_v1) 380 JGI JGI purple false brome 98.0 95.9 unrestricted +Brachypodium distachyon BdTR11g v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11g_v1) 357 JGI JGI purple false brome 98.3 97.6 unrestricted +Brachypodium distachyon BdTR11i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11i_v1) 363 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon BdTR12c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR12c_v1) 352 JGI JGI purple false brome 96.7 94.8 unrestricted +Brachypodium distachyon BdTR13a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR13a_v1) 334 JGI JGI purple false brome 98.7 97.8 unrestricted +Brachypodium distachyon BdTR13c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR13c_v1) 365 JGI JGI purple false brome 96.7 95.1 unrestricted +Brachypodium distachyon BdTR1i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR1i_v1) 345 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon BdTR2b v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR2b_v1) 376 JGI JGI purple false brome 96.7 96.7 unrestricted +Brachypodium distachyon BdTR2g v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR2g_v1) 367 JGI JGI purple false brome 95.7 95.3 unrestricted +Brachypodium distachyon BdTR3c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR3c_v1) 354 JGI JGI purple false brome 98.0 98.0 unrestricted +Brachypodium distachyon BdTR5i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR5i_v1) 370 JGI JGI purple false brome 96.4 94.1 unrestricted +Brachypodium distachyon BdTR7a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR7a_v1) 329 JGI JGI purple false brome 98.0 97.2 unrestricted +Brachypodium distachyon BdTR8i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR8i_v1) 348 JGI JGI purple false brome 97.7 97.2 unrestricted +Brachypodium distachyon BdTR9k v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR9k_v1) 358 JGI JGI purple false brome 96.0 94.5 unrestricted +Brachypodium distachyon Bis-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBis_1_v1) 338 JGI JGI purple false brome 97.7 96.9 unrestricted +Brachypodium distachyon Foz1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonFoz1_v1) 366 JGI JGI purple false brome 98.3 96.8 unrestricted +Brachypodium distachyon Gaz-8 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonGaz_8_v1) 339 JGI JGI purple false brome 88.8 75.0 unrestricted +Brachypodium distachyon Jer1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonJer1_v1) 375 JGI JGI purple false brome 97.7 96.5 unrestricted +Brachypodium distachyon Kah-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKah_1_v1) 351 JGI JGI purple false brome 89.4 86.5 unrestricted +Brachypodium distachyon Kah-5 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKah_5_v1) 342 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Koz-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKoz_1_v1) 330 JGI JGI purple false brome 98.0 98.3 unrestricted +Brachypodium distachyon Koz-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKoz_3_v1) 368 JGI JGI purple false brome 94.7 95.6 unrestricted +Brachypodium distachyon Luc1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonLuc1_v1) 347 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Mig3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMig3_v1) 377 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon Mon3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMon3_v1) 350 JGI JGI purple false brome 98.0 96.6 unrestricted +Brachypodium distachyon Mur1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMur1_v1) 373 JGI JGI purple false brome 95.7 96.2 unrestricted +Brachypodium distachyon Pangenome v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonPangenome_v1) 335 JGI JGI purple false brome 98.7 98.7 unrestricted +Brachypodium distachyon Per1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonPer1_v1) 326 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Ron2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonRon2_v1) 360 JGI JGI purple false brome 97.4 97.6 unrestricted +Brachypodium distachyon S8iic v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonS8iic_v1) 340 JGI JGI purple false brome 97.7 97.5 unrestricted +Brachypodium distachyon Sig2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonSig2_v1) 371 JGI JGI purple false brome 98.7 96.7 unrestricted +Brachypodium distachyon Tek-2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonTek_2_v1) 341 JGI JGI purple false brome 96.7 96.7 unrestricted +Brachypodium distachyon Tek-4 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonTek_4_v1) 332 JGI JGI purple false brome 82.2 75.1 unrestricted +Brachypodium distachyon Uni2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonUni2_v1) 327 JGI JGI purple false brome 97.7 97.5 unrestricted +Brachypodium hybridum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bhybridum_v1_1) 463 JGI JGI 97.7 99.4 unrestricted +Brachypodium hybridum Bhyb26 v2.1 (https://phytozome-next.jgi.doe.gov/info/BhybridumBhyb26_v2_1) 693 JGI JGI 98.3 99.7 restricted +Brachypodium mexicanum v2.1 (https://phytozome-next.jgi.doe.gov/info/Bmexicanum_v2_1) 813 JGI 98.7 99.5 unrestricted +Brachypodium mexicanum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bmexicanum_v1_1) 577 JGI JGI 98.7 99.5 unrestricted +Brachypodium stacei v1.1 (https://phytozome-next.jgi.doe.gov/info/Bstacei_v1_1) 316 JGI JGI 98.0 98.6 unrestricted +Brachypodium sylvaticum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bsylvaticum_v1_1) 490 JGI JGI 98.3 97.2 restricted +Brachypodium sylvaticum Ain-1 v2.1 (https://phytozome-next.jgi.doe.gov/info/BsylvaticumAin_1_v2_1) 721 JGI JGI 97.7 99.1 restricted +Brassica oleracea capitata v1.0 (https://phytozome-next.jgi.doe.gov/info/Boleraceacapitata_v1_0) 446 OCRI OCRI cabbage 88.8 78.4 unrestricted +Brassica rapa FPsc v1.3 (https://phytozome-next.jgi.doe.gov/info/BrapaFPsc_v1_3) 277 JGI JGI turnip mustard 97.7 96.9 unrestricted +Brassica rapa ssp. trilocularis R500 v2.1 (https://phytozome-next.jgi.doe.gov/info/Brapassp_trilocularisR500_v2_1) 795 JGI JGI 98.3 99.0 restricted +Cakile maritima v1.1 (https://phytozome-next.jgi.doe.gov/info/Cmaritima_v1_1) 481 JGI JGI european searocket 98.3 97.9 restricted +Capsella grandiflora v1.1 (https://phytozome-next.jgi.doe.gov/info/Cgrandiflora_v1_1) 266 JGI JGI 94.1 94.6 unrestricted +Capsella rubella v1.1 (https://phytozome-next.jgi.doe.gov/info/Crubella_v1_1) 474 JGI JGI Pink shepherd's purse 98.3 97.2 unrestricted +Carica papaya ASGPBv0.4 (https://phytozome-next.jgi.doe.gov/info/Cpapaya_ASGPBv0_4) 113 ASGPB ASGPB papaya 82.5 72.0 unrestricted +Carya illinoinensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Cillinoinensis_v1_1) 573 HA JGI pecan 98.7 97.8 unrestricted +Carya illinoinensis Elliott v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisElliott_v1_1) 562 HA HA pecan 96.4 94.4 unrestricted +Carya illinoinensis Lakota v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisLakota_v1_1) 561 HA HA pecan 98.3 97.5 unrestricted +Carya illinoinensis Pawnee v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisPawnee_v1_1) 588 HA HA pecan 98.0 95.9 unrestricted +Castanea dentata v1.1 (https://phytozome-next.jgi.doe.gov/info/Cdentata_v1_1) 673 HA HA American chestnut 98.3 98.7 restricted +Castanea mollissima Mahogany HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaMahoganyHAP1_v1_1) 733 HA HA Chinese chestnut 97.7 97.6 restricted +Castanea mollissima Mahogany HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaMahoganyHAP2_v1_1) 729 HA HA Chinese chestnut 97.7 97.4 restricted +Castanea mollissima Nanking HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaNankingHAP1_v1_1) 732 HA HA Chinese chestnut 98.0 98.1 restricted +Castanea mollissima Nanking HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaNankingHAP2_v1_1) 731 HA HA Chinese chestnut 97.7 97.9 restricted +Caulanthus amplexicaulis v1.1 (https://phytozome-next.jgi.doe.gov/info/Camplexicaulis_v1_1) 470 JGI JGI claspingleaf wild cabbage 98.7 98.8 restricted +Ceratodon purpureus GG1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CpurpureusGG1_v1_1) 539 JGI JGI 96.7 69.1 unrestricted +Ceratodon purpureus R40 v1.1 (https://phytozome-next.jgi.doe.gov/info/CpurpureusR40_v1_1) 538 JGI JGI 96.4 69.0 unrestricted +Ceratopteris richardii v2.1 (https://phytozome-next.jgi.doe.gov/info/Crichardii_v2_1) 676 JGI JGI 98.0 71.0 unrestricted +Cercis canadensis V3.1 (https://phytozome-next.jgi.doe.gov/info/Ccanadensis_V3_1) 705 JGI JGI eastern redbud 98.3 99.0 restricted +Cercis canadensis HAP2 V3.1 (https://phytozome-next.jgi.doe.gov/info/CcanadensisHAP2_V3_1) 706 JGI JGI eastern redbud 98.0 99.0 restricted +Chasmanthium laxum v1.1 (https://phytozome-next.jgi.doe.gov/info/Claxum_v1_1) 690 JGI JGI Slender wood oats 97.4 98.1 restricted +Chenopodium quinoa v1.0 (https://phytozome-next.jgi.doe.gov/info/Cquinoa_v1_0) 392 KAUST KAUST quinoa 96.0 90.6 unrestricted +Chlamydomonas reinhardtii v5.6 (https://phytozome-next.jgi.doe.gov/info/Creinhardtii_v5_6) 281 JGI JGI green algae 96.0 27.6 unrestricted +Chlamydomonas reinhardtii CC-4532 v6.1 (https://phytozome-next.jgi.doe.gov/info/CreinhardtiiCC_4532_v6_1) 707 JGI JGI green algae 97.0 28.5 unrestricted +Chromochloris zofingiensis v5.2.3.2 (https://phytozome-next.jgi.doe.gov/info/Czofingiensis_v5_2_3_2) 461 UCLA UCLA 84.5 27.0 unrestricted +Cicer arietinum v1.0 (https://phytozome-next.jgi.doe.gov/info/Carietinum_v1_0) 492 CGIAR CGIAR chickpea 95.4 89.6 unrestricted +Cinnamomum kanehirae v3 (https://phytozome-next.jgi.doe.gov/info/Ckanehirae_v3) 531 BRCAS BRCAS stout camphor tree 93.1 89.8 unrestricted +Citrus clementina v1.0 (https://phytozome-next.jgi.doe.gov/info/Cclementina_v1_0) 182 JGI JGI clementine 96.7 94.6 unrestricted +Citrus sinensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Csinensis_v1_1) 154 JGI JGI sweet orange 91.4 87.2 unrestricted +Cleome violacea v1.1 (https://phytozome-next.jgi.doe.gov/info/Cviolacea_v1_1) 484 JGI JGI spider plant 98.7 97.6 restricted +Cleome violacea v2.1 (https://phytozome-next.jgi.doe.gov/info/Cviolacea_v2_1) 585 JGI JGI spider plant 98.7 98.1 restricted +Coccomyxa subellipsoidea C-169 v2.0 (https://phytozome-next.jgi.doe.gov/info/CsubellipsoideaC_169_v2_0) 227 JGI.FG JGI.FG 89.1 26.5 unrestricted +Coffea arabica v0.5 (https://phytozome-next.jgi.doe.gov/info/Carabica_v0_5) 453 UCD UCD coffee 98.3 94.8 restricted +Corylus americana var. rush v1.1 (https://phytozome-next.jgi.doe.gov/info/Camericanavar_rush_v1_1) 835 JGI JGI American hazelnut Rush 98.7 98.8 unrestricted +Corylus americana var. winkler v1.1 (https://phytozome-next.jgi.doe.gov/info/Camericanavar_winkler_v1_1) 834 JGI JGI American hazelnut Winkler 96.7 95.1 unrestricted +Corymbia citriodora v2.1 (https://phytozome-next.jgi.doe.gov/info/Ccitriodora_v2_1) 507 JGI JGI lemon-scented gum 95.1 95.1 unrestricted +Crambe hispanica v1.1 (https://phytozome-next.jgi.doe.gov/info/Chispanica_v1_1) 488 JGI JGI 98.3 97.8 restricted +Cucumis sativus v1.0 (https://phytozome-next.jgi.doe.gov/info/Csativus_v1_0) 122 Roche/JGI Roche/JGI cucumber 95.0 89.0 unrestricted +Daucus carota v2.0 (https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0) 388 WISC WISC carrot 92.0 83.2 unrestricted +Descurainia sophioides v1.1 (https://phytozome-next.jgi.doe.gov/info/Dsophioides_v1_1) 482 JGI JGI northern tansymustard 98.0 96.5 restricted +Dioscorea alata v1.1 (https://phytozome-next.jgi.doe.gov/info/Dalata_v1_1) 504 JGI JGI yam 88.1 79.5 unrestricted +Dioscorea alata v2.1 (https://phytozome-next.jgi.doe.gov/info/Dalata_v2_1) 550 UC Berkeley JGI yam 96.4 94.9 restricted +Diphasiastrum complanatum v3.1 (https://phytozome-next.jgi.doe.gov/info/Dcomplanatum_v3_1) 723 JGI JGI 97.4 76.5 restricted +Diptychocarpus strictus v1.1 (https://phytozome-next.jgi.doe.gov/info/Dstrictus_v1_1) 489 JGI JGI 98.0 93.9 restricted +Diptychocarpus strictus v2.1 (https://phytozome-next.jgi.doe.gov/info/Dstrictus_v2_1) 582 JGI JGI 98.7 94.6 restricted +Dunaliella salina v1.0 (https://phytozome-next.jgi.doe.gov/info/Dsalina_v1_0) 325 JGI JGI 77.6 18.6 unrestricted +Eleusine coracana v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecoracana_v1_1) 560 UGA/MIPS UGA/MIPS finger millet 97.0 94.9 unrestricted +Eruca vesicaria v1.1 (https://phytozome-next.jgi.doe.gov/info/Evesicaria_v1_1) 487 JGI JGI arugula 99.3 98.3 restricted +Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecalifornicavar_AurantiacaOrangeKingPlant1_1HAP1_v1_1) 828 JGI JGI California poppy 98.7 97.6 restricted +Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecalifornicavar_AurantiacaOrangeKingPlant1_1HAP2_v1_1) 827 JGI JGI California poppy 98.7 97.4 restricted +Eucalyptus grandis v2.0 (https://phytozome-next.jgi.doe.gov/info/Egrandis_v2_0) 297 JGI JGI eucalyptus 95.0 92.3 unrestricted +Euclidium syriacum v1.1 (https://phytozome-next.jgi.doe.gov/info/Esyriacum_v1_1) 483 JGI JGI syrian mustard 97.7 96.7 restricted +Eutrema salsugineum v1.0 (https://phytozome-next.jgi.doe.gov/info/Esalsugineum_v1_0) 173 JGI JGI salt cress 98.7 98.4 unrestricted +Fragaria vesca v2.0.a2 (https://phytozome-next.jgi.doe.gov/info/Fvesca_v2_0_a2) 501 HAU HAU woodland strawberry 96.4 95.8 unrestricted +Fragaria vesca v4.0.a2 (https://phytozome-next.jgi.doe.gov/info/Fvesca_v4_0_a2) 677 UCD HAU woodland strawberry 97.7 97.8 unrestricted +Fragaria x ananassa v1.0.a1 (https://phytozome-next.jgi.doe.gov/info/Fxananassa_v1_0_a1) 675 UCD UCD strawberry 98.3 96.9 unrestricted +Fragaria x ananassa Royal Royce v1.0 (https://phytozome-next.jgi.doe.gov/info/FxananassaRoyalRoyce_v1_0) 701 UCDAVIS UCDAVIS allo-octoploid strawberry 97.7 97.4 restricted +Glycine max Wm82.a2.v1 (https://phytozome-next.jgi.doe.gov/info/Gmax_Wm82_a2_v1) 275 JGI JGI soybean 98.3 97.4 unrestricted +Glycine max Wm82.a4.v1 (https://phytozome-next.jgi.doe.gov/info/Gmax_Wm82_a4_v1) 508 JGI JGI soybean 98.3 97.6 unrestricted +Glycine max Fiskeby v1.1 (https://phytozome-next.jgi.doe.gov/info/GmaxFiskeby_v1_1) 678 HA JGI soybean 98.3 97.7 restricted +Glycine max Lee v1.1 (https://phytozome-next.jgi.doe.gov/info/GmaxLee_v1_1) 510 JGI JGI soybean 97.3 97.3 restricted +Glycine max Wm82 ISU-01 v2.1 (https://phytozome-next.jgi.doe.gov/info/GmaxWm82ISU_01_v2_1) 724 JGI JGI 98.3 97.7 restricted +Glycine soja v1.1 (https://phytozome-next.jgi.doe.gov/info/Gsoja_v1_1) 509 JGI JGI soybean 98.3 96.7 unrestricted +Gossypium barbadense v1.1 (https://phytozome-next.jgi.doe.gov/info/Gbarbadense_v1_1) 526 HA HA cotton 99.0 98.2 unrestricted +Gossypium darwinii v1.1 (https://phytozome-next.jgi.doe.gov/info/Gdarwinii_v1_1) 529 HA HA cotton 99.3 98.5 unrestricted +Gossypium hirsutum v3.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v3_1) 578 HA HA upland cotton 99.0 98.6 restricted +Gossypium hirsutum v1.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v1_1) 458 HA HA upland cotton 99.0 97.8 unrestricted +Gossypium hirsutum v2.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v2_1) 527 HA HA upland cotton 99.0 98.5 unrestricted +Gossypium hirsutum CSX8308 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumCSX8308_v1_1) 570 HA HA upland cotton 98.7 98.5 restricted +Gossypium hirsutum Coker v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumCoker_v1_1) 698 HA HA upland cotton 99.0 98.7 restricted +Gossypium hirsutum DeltaPearl v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumDeltaPearl_v1_1) 695 HA HA upland cotton 99.3 98.7 restricted +Gossypium hirsutum FM958 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumFM958_v1_1) 697 HA HA upland cotton 99.0 98.5 restricted +Gossypium hirsutum UA48 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumUA48_v1_1) 569 HA HA upland cotton 99.0 98.3 restricted +Gossypium hirsutum UGA230 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumUGA230_v1_1) 568 HA HA upland cotton 99.0 98.5 restricted +Gossypium mustelinum v1.1 (https://phytozome-next.jgi.doe.gov/info/Gmustelinum_v1_1) 524 HA HA cotton 99.3 98.3 unrestricted +Gossypium raimondii v2.1 (https://phytozome-next.jgi.doe.gov/info/Graimondii_v2_1) 221 JGI JGI cotton 98.3 97.4 unrestricted +Gossypium tomentosum v1.1 (https://phytozome-next.jgi.doe.gov/info/Gtomentosum_v1_1) 525 HA HA cotton 99.3 98.6 unrestricted +Helianthus annuus r1.2 (https://phytozome-next.jgi.doe.gov/info/Hannuus_r1_2) 494 INRA INRA sunflower 98.0 93.6 unrestricted +Hordeum vulgare r1 (https://phytozome-next.jgi.doe.gov/info/Hvulgare_r1) 462 IBSC IBSC barley 91.4 84.7 unrestricted +Hordeum vulgare Morex V3 (https://phytozome-next.jgi.doe.gov/info/HvulgareMorex_V3) 702 HA IPK Morex barley 92.1 94.7 unrestricted +Hydrangea quercifolia v1.1 (https://phytozome-next.jgi.doe.gov/info/Hquercifolia_v1_1) 589 HA HA oakleaf hydrangea 96.7 93.1 restricted +Iberis amara v1.1 (https://phytozome-next.jgi.doe.gov/info/Iamara_v1_1) 485 JGI JGI rocket candytuft 98.3 96.5 restricted +Isatis tinctoria v1.1 (https://phytozome-next.jgi.doe.gov/info/Itinctoria_v1_1) 475 JGI JGI dyer's woad 98.0 96.8 restricted +Joinvillea ascendens v1.1 (https://phytozome-next.jgi.doe.gov/info/Jascendens_v1_1) 587 JGI JGI `ohe 98.0 98.0 restricted +Kalanchoe fedtschenkoi v1.1 (https://phytozome-next.jgi.doe.gov/info/Kfedtschenkoi_v1_1) 382 JGI JGI lavender scallops 96.7 89.5 unrestricted +Kalanchoe laxiflora v1.1 (https://phytozome-next.jgi.doe.gov/info/Klaxiflora_v1_1) 309 JGI JGI 98.7 94.3 restricted +Kalanchoe laxiflora FTBG2000359A v3.1 (https://phytozome-next.jgi.doe.gov/info/KlaxifloraFTBG2000359A_v3_1) 699 JGI JGI 98.7 93.2 restricted +Lactuca sativa V8 (https://phytozome-next.jgi.doe.gov/info/Lsativa_V8) 467 UCDavis UCDavis lettuce 96.4 92.5 unrestricted +Lens culinaris v1 (https://phytozome-next.jgi.doe.gov/info/Lculinaris_v1) 718 USask USask 97.4 92.4 unrestricted +Lens ervoides v1 (https://phytozome-next.jgi.doe.gov/info/Lervoides_v1) 719 USask USask 96.7 92.7 unrestricted +Lepidium sativum v1.1 (https://phytozome-next.jgi.doe.gov/info/Lsativum_v1_1) 478 JGI JGI garden cress 98.7 98.0 restricted +Lindenbergia philippensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Lphilippensis_v1_1) 689 JGI JGI 98.0 96.7 restricted +Linum usitatissimum v1.0 (https://phytozome-next.jgi.doe.gov/info/Lusitatissimum_v1_0) 200 BGI BGI flax 97.7 92.1 unrestricted +Liriodendron tulipifera YP108A v1.1 (https://phytozome-next.jgi.doe.gov/info/LtulipiferaYP108A_v1_1) 766 JGI JGI 98.0 98.3 restricted +Liriodendron tulipifera YP108A alt v1.1 (https://phytozome-next.jgi.doe.gov/info/LtulipiferaYP108Aalt_v1_1) 767 JGI JGI 95.7 94.7 restricted +Lotus japonicus Lj1.0v1 (https://phytozome-next.jgi.doe.gov/info/Ljaponicus_Lj1_0v1) 571 HAU HAU 98.3 96.7 unrestricted +Lunaria annua v1.1 (https://phytozome-next.jgi.doe.gov/info/Lannua_v1_1) 476 JGI JGI annual honesty 98.7 97.6 restricted +Lupinus albus v1 (https://phytozome-next.jgi.doe.gov/info/Lalbus_v1) 567 PeretLab PeretLab white lupine 97.0 95.0 unrestricted +Malcolmia maritima v1.1 (https://phytozome-next.jgi.doe.gov/info/Mmaritima_v1_1) 477 JGI JGI Virginia stock 99.0 98.8 restricted +Malus domestica v1.1 (https://phytozome-next.jgi.doe.gov/info/Mdomestica_v1_1) 491 AGE AGE apple 96.4 96.8 restricted +Manihot esculenta v6.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v6_1) 305 JGI JGI cassava 97.7 95.3 unrestricted +Manihot esculenta v7.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v7_1) 520 UC Berkeley JGI cassava 98.7 98.1 unrestricted +Manihot esculenta v8.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v8_1) 671 UCB JGI cassava 98.3 98.7 unrestricted +Marchantia polymorpha v3.1 (https://phytozome-next.jgi.doe.gov/info/Mpolymorpha_v3_1) 320 JGI JGI common liverwort 97.7 66.7 unrestricted +Medicago truncatula Mt4.0v1 (https://phytozome-next.jgi.doe.gov/info/Mtruncatula_Mt4_0v1) 285 JCVI JCVI barrel medic 97.4 93.6 unrestricted +Micromonas pusilla CCMP1545 v3.0 (https://phytozome-next.jgi.doe.gov/info/MpusillaCCMP1545_v3_0) 228 JGI.FG JGI.FG 87.5 21.1 unrestricted +Micromonas sp RCC299 v3.0 (https://phytozome-next.jgi.doe.gov/info/MspRCC299_v3_0) 229 JGI.FG JGI.FG 89.8 22.7 unrestricted +Mimulus guttatus v2.0 (https://phytozome-next.jgi.doe.gov/info/Mguttatus_v2_0) 256 JGI JGI monkey flower 98.0 94.5 unrestricted +Mimulus guttatus NONTOL v3.1 (https://phytozome-next.jgi.doe.gov/info/MguttatusNONTOL_v3_1) 506 JGI JGI monkey flower 91.9 91.9 restricted +Mimulus guttatus NONTOL v4.0 (https://phytozome-next.jgi.doe.gov/info/MguttatusNONTOL_v4_0) 553 JGI JGI monkey flower 95.7 91.8 restricted +Mimulus guttatus TOL v3.1 (https://phytozome-next.jgi.doe.gov/info/MguttatusTOL_v3_1) 505 JGI JGI monkey flower 93.0 93.0 restricted +Mimulus guttatus TOL v5.0 (https://phytozome-next.jgi.doe.gov/info/MguttatusTOL_v5_0) 551 JGI JGI monkey flower 96.0 93.1 restricted +Miscanthus sinensis v7.1 (https://phytozome-next.jgi.doe.gov/info/Msinensis_v7_1) 497 JGI JGI Chinese silver grass 97.7 97.6 unrestricted +Musa acuminata v1 (https://phytozome-next.jgi.doe.gov/info/Macuminata_v1) 304 Genoscope/Cirad Genoscope/Cirad banana 94.1 86.7 unrestricted +Myagrum perfoliatum v1.1 (https://phytozome-next.jgi.doe.gov/info/Mperfoliatum_v1_1) 471 JGI JGI bird's eye cress 98.3 97.6 restricted +Myagrum perfoliatum v2.1 (https://phytozome-next.jgi.doe.gov/info/Mperfoliatum_v2_1) 583 JGI JGI bird's eye cress 98.0 98.5 restricted +Nymphaea colorata v1.2 (https://phytozome-next.jgi.doe.gov/info/Ncolorata_v1_2) 566 Zhejiang University JGI water lilly 98.0 92.5 unrestricted +Olea europaea v1.0 (https://phytozome-next.jgi.doe.gov/info/Oeuropaea_v1_0) 451 OGC OGC olive 90.1 79.9 unrestricted +Oropetium thomaeum v1.0 (https://phytozome-next.jgi.doe.gov/info/Othomaeum_v1_0) 386 DanforthCenter DanforthCenter 84.2 70.2 unrestricted +Oryza sativa v7.0 (https://phytozome-next.jgi.doe.gov/info/Osativa_v7_0) 323 MSU MSU rice 95.0 95.6 unrestricted +Oryza sativa Kitaake v3.1 (https://phytozome-next.jgi.doe.gov/info/OsativaKitaake_v3_1) 499 JGI JGI rice 98.3 99.1 unrestricted +Ostreococcus lucimarinus v2.0 (https://phytozome-next.jgi.doe.gov/info/Olucimarinus_v2_0) 231 JGI.FG JGI.FG 84.5 20.2 unrestricted +Panicum hallii v2.0 (https://phytozome-next.jgi.doe.gov/info/Phallii_v2_0) 308 JGI JGI Hall's panicgrass 97.4 96.6 unrestricted +Panicum hallii v3.1 (https://phytozome-next.jgi.doe.gov/info/Phallii_v3_1) 495 JGI JGI Hall's panicgrass 97.4 98.1 unrestricted +Panicum hallii v3.2 (https://phytozome-next.jgi.doe.gov/info/Phallii_v3_2) 590 JGI JGI Hall's panicgrass 97.7 99.3 unrestricted +Panicum hallii HAL v2.1 (https://phytozome-next.jgi.doe.gov/info/PhalliiHAL_v2_1) 496 JGI JGI Hall's panicgrass 98.0 98.9 unrestricted +Panicum hallii HAL v2.2 (https://phytozome-next.jgi.doe.gov/info/PhalliiHAL_v2_2) 591 JGI JGI Hall's panicgrass 98.3 99.2 unrestricted +Panicum virgatum v4.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatum_v4_1) 450 JGI JGI switchgrass 98.0 98.3 unrestricted +Panicum virgatum v5.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatum_v5_1) 516 JGI JGI switchgrass 98.3 99.4 unrestricted +Panicum virgatum var. AP13 HAP1 v6.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatumvar_AP13HAP1_v6_1) 772 JGI JGI switchgrass 98.3 99.7 restricted +Panicum virgatum var. AP13 HAP2 v6.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatumvar_AP13HAP2_v6_1) 773 JGI JGI switchgrass 98.3 99.7 restricted +Paspalum vaginatum v3.1 (https://phytozome-next.jgi.doe.gov/info/Pvaginatum_v3_1) 672 HA JGI biscuit grass 97.7 98.9 unrestricted +Pharus latifolius v1.1 (https://phytozome-next.jgi.doe.gov/info/Platifolius_v1_1) 680 JGI JGI 98.0 98.4 restricted +Phaseolus acutifolius v1.0 (https://phytozome-next.jgi.doe.gov/info/Pacutifolius_v1_0) 580 HA MSU tepary bean 97.4 94.7 unrestricted +Phaseolus acutifolius WLD v2.0 (https://phytozome-next.jgi.doe.gov/info/PacutifoliusWLD_v2_0) 581 U Saskatchewan MSU tepary bean 96.4 95.8 unrestricted +Phaseolus lunatus V1 (https://phytozome-next.jgi.doe.gov/info/Plunatus_V1) 563 Uniandes Uniandes lima bean 96.4 93.7 restricted +Phaseolus vulgaris v2.1 (https://phytozome-next.jgi.doe.gov/info/Pvulgaris_v2_1) 442 JGI JGI common bean 97.7 96.4 restricted +Phaseolus vulgaris 5-593 v1.1 (https://phytozome-next.jgi.doe.gov/info/Pvulgaris5_593_v1_1) 696 HA HA common bean 98.3 96.0 restricted +Phaseolus vulgaris Labor Ovalle v1.1 (https://phytozome-next.jgi.doe.gov/info/PvulgarisLaborOvalle_v1_1) 670 HA HA common bean 98.3 95.1 restricted +Phaseolus vulgaris UI111 v1.1 (https://phytozome-next.jgi.doe.gov/info/PvulgarisUI111_v1_1) 534 JGI JGI common bean 98.3 96.9 restricted +Physcomitrium patens v3.3 (https://phytozome-next.jgi.doe.gov/info/Ppatens_v3_3) 318 COSMOSS COSMOSS moss Physcomitrella patens 98.7 67.9 unrestricted +Poncirus trifoliata v1.3.1 (https://phytozome-next.jgi.doe.gov/info/Ptrifoliata_v1_3_1) 565 JGI JGI hardy orange 97.4 97.2 unrestricted +Populus deltoides WV94 v2.1 (https://phytozome-next.jgi.doe.gov/info/PdeltoidesWV94_v2_1) 445 JGI JGI eastern cottonwood 97.7 94.4 restricted +Populus nigra x maximowiczii NM6 v1.1 (https://phytozome-next.jgi.doe.gov/info/PnigraxmaximowicziiNM6_v1_1) 688 JGI JGI hybrid poplar 99.3 98.6 restricted +Populus tremula x Populus alba HAP1 v5.1 (https://phytozome-next.jgi.doe.gov/info/PtremulaxPopulusalbaHAP1_v5_1) 717 JGI JGI 98.7 98.7 restricted +Populus tremula x Populus alba HAP2 v5.1 (https://phytozome-next.jgi.doe.gov/info/PtremulaxPopulusalbaHAP2_v5_1) 716 JGI JGI 98.3 98.7 restricted +Populus trichocarpa v3.0 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v3_0) 210 JGI JGI western poplar 98.7 97.6 unrestricted +Populus trichocarpa v3.1 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v3_1) 444 JGI JGI western poplar 98.7 97.4 unrestricted +Populus trichocarpa v4.1 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v4_1) 533 JGI JGI western poplar 98.7 98.9 unrestricted +Populus trichocarpa Stettler14 v1.1 (https://phytozome-next.jgi.doe.gov/info/PtrichocarpaStettler14_v1_1) 532 JGI JGI western poplar 98.3 98.3 restricted +Porphyra umbilicalis v1.5 (https://phytozome-next.jgi.doe.gov/info/Pumbilicalis_v1_5) 456 JGI JGI seaweed 62.0 7.7 unrestricted +Portulaca amilis v1.0 (https://phytozome-next.jgi.doe.gov/info/Pamilis_v1_0) 692 Yale Yale Paraguayan purslane 93.7 89.0 unrestricted +Prunus persica v2.1 (https://phytozome-next.jgi.doe.gov/info/Ppersica_v2_1) 298 JGI JGI peach 99.0 98.8 unrestricted +Quercus rubra v2.1 (https://phytozome-next.jgi.doe.gov/info/Qrubra_v2_1) 687 HA HA northern red oak 97.7 97.4 restricted +Ricinus communis v0.1 (https://phytozome-next.jgi.doe.gov/info/Rcommunis_v0_1) 119 TIGR TIGR castor bean plant 94.1 90.0 unrestricted +Rorippa islandica v1.1 (https://phytozome-next.jgi.doe.gov/info/Rislandica_v1_1) 473 JGI JGI marsh cress 98.7 98.1 restricted +Saccharum officinarum x spontaneum R570 v2.1 (https://phytozome-next.jgi.doe.gov/info/SofficinarumxspontaneumR570_v2_1) 771 JGI JGI sugarcane 98.7 99.8 restricted +Salix purpurea v1.0 (https://phytozome-next.jgi.doe.gov/info/Spurpurea_v1_0) 289 JGI/JCVI JGI/JCVI shrub willow 98.7 97.0 unrestricted +Salix purpurea v5.1 (https://phytozome-next.jgi.doe.gov/info/Spurpurea_v5_1) 519 JGI JGI shrub willow 98.3 97.0 unrestricted +Salix purpurea Fish Creek v3.1 (https://phytozome-next.jgi.doe.gov/info/SpurpureaFishCreek_v3_1) 518 JGI JGI shrub willow 98.3 97.2 unrestricted +Schrenkiella parvula v2.2 (https://phytozome-next.jgi.doe.gov/info/Sparvula_v2_2) 574 LSU LSU 98.3 96.8 unrestricted +Selaginella moellendorffii v1.0 (https://phytozome-next.jgi.doe.gov/info/Smoellendorffii_v1_0) 91 JGI JGI spikemoss 95.7 61.8 unrestricted +Setaria italica v2.2 (https://phytozome-next.jgi.doe.gov/info/Sitalica_v2_2) 312 JGI JGI foxtail millet 98.7 98.4 unrestricted +Setaria viridis v1.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v1_1) 311 JGI JGI green foxtail millet 97.7 97.5 unrestricted +Setaria viridis v2.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v2_1) 500 JGI JGI green foxtail millet 98.0 99.0 unrestricted +Setaria viridis v4.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v4_1) 726 JGI JGI green foxtail millet 98.3 99.2 restricted +Sinapis alba v1.1 (https://phytozome-next.jgi.doe.gov/info/Salba_v1_1) 480 JGI JGI white mustard 98.0 98.2 restricted +Sinapis alba v3.1 (https://phytozome-next.jgi.doe.gov/info/Salba_v3_1) 584 JGI JGI white mustard 98.3 98.1 restricted +Solanum lycopersicum ITAG2.4 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG2_4) 390 iTAG iTAG tomato 96.3 95.5 unrestricted +Solanum lycopersicum ITAG3.2 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG3_2) 514 iTAG ITAG tomato 95.7 94.5 unrestricted +Solanum lycopersicum ITAG4.0 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG4_0) 691 SGN ITAG tomato 95.4 93.6 unrestricted +Solanum lycopersicum ITAG5.0 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG5_0) 796 AGI_CAAS_Shenzhen AGI_CAAS_Shenzhen tomato 94.7 93.5 restricted +Solanum tuberosum v4.03 (https://phytozome-next.jgi.doe.gov/info/Stuberosum_v4_03) 448 MSU MSU potato 87.1 85.5 unrestricted +Solanum tuberosum v6.1 (https://phytozome-next.jgi.doe.gov/info/Stuberosum_v6_1) 686 MSU MSU potato 98.0 95.1 unrestricted +Sorghum bicolor v3.1.1 (https://phytozome-next.jgi.doe.gov/info/Sbicolor_v3_1_1) 454 JGI JGI sorghum 98.3 98.3 unrestricted +Sorghum bicolor v5.1 (https://phytozome-next.jgi.doe.gov/info/Sbicolor_v5_1) 730 JGI JGI sorghum 98.7 99.7 restricted +Sorghum bicolor BTx642 v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorBTx642_v1_1) 564 JGI JGI sorghum 98.3 99.4 restricted +Sorghum bicolor RTx430 v2.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorRTx430_v2_1) 552 JGI JGI sorghum 98.0 99.2 restricted +Sorghum bicolor Rio v2.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorRio_v2_1) 468 JGI JGI sorghum 97.0 97.0 unrestricted +Sorghum bicolor SC187 v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorSC187_v1_1) 694 JGI JGI sorghum 98.0 99.4 restricted +Sorghum bicolor Wray v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorWray_v1_1) 781 JGI JGI 98.0 99.4 restricted +Sphagnum fallax v0.5 (https://phytozome-next.jgi.doe.gov/info/Sfallax_v0_5) 310 JGI JGI flat-topped bogmoss 98.0 71.1 unrestricted +Sphagnum fallax v1.1 (https://phytozome-next.jgi.doe.gov/info/Sfallax_v1_1) 522 JGI JGI flat-topped bogmoss 98.3 71.3 unrestricted +Sphagnum magellanicum v1.1 (https://phytozome-next.jgi.doe.gov/info/Smagellanicum_v1_1) 521 JGI JGI magellanic bogmoss Sphagnum divinum 98.3 71.6 unrestricted +Spinacia oleracea Spov3 (https://phytozome-next.jgi.doe.gov/info/Soleracea_Spov3) 575 UCD UCD spinach 92.7 83.9 unrestricted +Spirodela polyrhiza v2 (https://phytozome-next.jgi.doe.gov/info/Spolyrhiza_v2) 290 MIPS MIPS greater duckweed 92.7 79.6 unrestricted +Stanleya pinnata v1.1 (https://phytozome-next.jgi.doe.gov/info/Spinnata_v1_1) 486 JGI JGI Princes Plume 82.8 71.2 restricted +Theobroma cacao v1.1 (https://phytozome-next.jgi.doe.gov/info/Tcacao_v1_1) 233 CGD CGD cocoa bean 98.3 97.7 unrestricted +Theobroma cacao v2.1 (https://phytozome-next.jgi.doe.gov/info/Tcacao_v2_1) 523 JGI JGI cocoa bean 98.3 98.1 restricted +Thinopyrum intermedium v2.1 (https://phytozome-next.jgi.doe.gov/info/Tintermedium_v2_1) 503 JGI JGI intermediate wheatgrass 97.7 97.4 restricted +Thinopyrum intermedium v3.1 (https://phytozome-next.jgi.doe.gov/info/Tintermedium_v3_1) 770 JGI JGI intermediate wheatgrass 98.3 99.7 unrestricted +Thlaspi arvense v1.1 (https://phytozome-next.jgi.doe.gov/info/Tarvense_v1_1) 479 JGI JGI field pennycress 98.3 97.5 restricted +Thuja plicata v3.1 (https://phytozome-next.jgi.doe.gov/info/Tplicata_v3_1) 572 UBC JGI western red-cedar 96.7 84.5 unrestricted +Trifolium pratense v2 (https://phytozome-next.jgi.doe.gov/info/Tpratense_v2) 385 TGAC TGAC red clover 93.4 87.6 unrestricted +Triticum aestivum v2.2 (https://phytozome-next.jgi.doe.gov/info/Taestivum_v2_2) 296 MIPS MIPS wheat 92.7 89.4 unrestricted +Triticum aestivum cv. Chinese Spring v2.1 (https://phytozome-next.jgi.doe.gov/info/Taestivumcv_ChineseSpring_v2_1) 725 IWGSC IWGSC bread wheat 98.0 99.3 unrestriced +Urochloa fusca v1.1 (https://phytozome-next.jgi.doe.gov/info/Ufusca_v1_1) 669 JGI JGI 95.4 97.2 restricted +Vaccinium darrowii v1.2 (https://phytozome-next.jgi.doe.gov/info/Vdarrowii_v1_2) 700 USDA/UTK USDA/UTK evergreen blueberry 93.7 90.1 unrestricted +Vigna unguiculata v1.1 (https://phytozome-next.jgi.doe.gov/info/Vunguiculata_v1_1) 469 UCR JGI cowpea 98.3 95.9 unrestricted +Vigna unguiculata v1.2 (https://phytozome-next.jgi.doe.gov/info/Vunguiculata_v1_2) 540 UCR JGI cowpea 98.7 96.0 restricted +Vigna unguiculata CB5-2 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataCB5_2_v1_1) 545 UCR JGI cowpea 97.7 95.1 restricted +Vigna unguiculata Sanzi v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataSanzi_v1_1) 544 UCR JGI cowpea 96.7 95.6 restricted +Vigna unguiculata Suvita2 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataSuvita2_v1_1) 541 UCR JGI cowpea 98.0 95.3 restricted +Vigna unguiculata TZ30 v1.2 (https://phytozome-next.jgi.doe.gov/info/VunguiculataTZ30_v1_2) 558 UCR JGI cowpea 97.7 95.3 restricted +Vigna unguiculata UCR779 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataUCR779_v1_1) 543 UCR JGI cowpea 97.0 95.6 restricted +Vigna unguiculata ZN016 v1.2 (https://phytozome-next.jgi.doe.gov/info/VunguiculataZN016_v1_2) 559 UCR JGI cowpea 96.7 95.6 restricted +Vitis vinifera v2.1 (https://phytozome-next.jgi.doe.gov/info/Vvinifera_v2_1) 457 CRIBI CRIBI grape vine 97.7 95.8 unrestricted +Volvox carteri v2.1 (https://phytozome-next.jgi.doe.gov/info/Vcarteri_v2_1) 317 JGI JGI volvox 94.7 26.0 unrestricted +Zea mays RefGen_V4 (https://phytozome-next.jgi.doe.gov/info/Zmays_RefGen_V4) 493 CSHL CSHL maize 97.7 95.2 unrestricted +Zea mays Zm-B73-REFERENCE-NAM-5.0.55 (https://phytozome-next.jgi.doe.gov/info/Zmays_Zm_B73_REFERENCE_NAM_5_0_55) 833 MaizeGDB nam-genomes maize 97.0 96.4 unrestricted +Zea mays B84 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysB84_v1_2) 681 JGI JGI maize 98.7 99.2 unrestricted +Zea mays LH145 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysLH145_v1_2) 682 JGI JGI maize 99.0 99.1 unrestricted +Zea mays NKH8431 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysNKH8431_v1_2) 683 JGI JGI maize 98.7 99.2 unrestricted +Zea mays PH207 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPH207_v1_1) 443 UMN UMN maize 95.0 87.9 unrestricted +Zea mays PHB47 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHB47_v1_1) 513 JGI JGI maize 97.7 97.4 unrestricted +Zea mays PHB47 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHB47_v1_2) 684 JGI JGI maize 98.7 99.0 unrestricted +Zea mays PHJ40 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHJ40_v1_1) 512 JGI JGI maize 98.7 98.0 unrestricted +Zea mays PHJ40 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHJ40_v1_2) 685 JGI JGI maize 98.7 99.2 unrestricted +Zostera marina v2.2 (https://phytozome-next.jgi.doe.gov/info/Zmarina_v2_2) 324 ORCAE ORCAE common eelgrass 97.0 85.0 unrestricted +Zostera marina v3.1 (https://phytozome-next.jgi.doe.gov/info/Zmarina_v3_1) 668 JGI Ghent common eelgrass 96.0 85.3 unrestricted diff --git a/data/default/contribute-data/contributor_datasets.json b/data/contributor_datasets.json similarity index 100% rename from data/default/contribute-data/contributor_datasets.json rename to data/contributor_datasets.json diff --git a/data/default/search-data-repositories/datasets.json b/data/datasets.json similarity index 100% rename from data/default/search-data-repositories/datasets.json rename to data/datasets.json diff --git a/data/default/run-computation/inputs.json b/data/default/run-computation/inputs.json deleted file mode 100644 index 1aa06d36..00000000 --- a/data/default/run-computation/inputs.json +++ /dev/null @@ -1,42 +0,0 @@ -[ - { - "id": 0, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 1, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 2, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 3, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 4, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - } -] \ No newline at end of file diff --git a/data/default/run-computation/list.json b/data/default/run-computation/list.json deleted file mode 100644 index 246fa9cc..00000000 --- a/data/default/run-computation/list.json +++ /dev/null @@ -1,37 +0,0 @@ -[ - { - "id": 0, - "name": "Scenario 1", - "analysisType": "Sensitivity Analysis", - "createdDate": "05/24/2023", - "status": "Running" - }, - { - "id": 1, - "name": "Scenario 2", - "analysisType": "Sensitivity Analysis", - "createdDate": "05/24/2023", - "status": "Draft" - }, - { - "id": 2, - "name": "Scenario 3", - "analysisType": "Optimization", - "createdDate": "05/24/2023", - "status": "Completed" - }, - { - "id": 3, - "name": "Scenario 4", - "analysisType": "Optimization", - "createdDate": "05/23/2023", - "status": "Completed" - }, - { - "id": 4, - "name": "Scenario 5", - "analysisType": "Optimization", - "createdDate": "05/23/2023", - "status": "Completed" - } -] \ No newline at end of file diff --git a/data/default/run-computation/results_bar_chart.json b/data/default/run-computation/results_bar_chart.json deleted file mode 100644 index 743c8e93..00000000 --- a/data/default/run-computation/results_bar_chart.json +++ /dev/null @@ -1,14 +0,0 @@ -[ - { - "x": ["Category 1", "Category 2", "Category 3"], - "y": [20, 14, 23], - "name": "Group 1", - "type": "bar" - }, - { - "x": ["Category 1", "Category 2", "Category 3"], - "y": [12, 18, 29], - "name": "Group 2", - "type": "bar" - } -] \ No newline at end of file diff --git a/data/default/run-computation/results_line_chart.json b/data/default/run-computation/results_line_chart.json deleted file mode 100644 index 2e72bae1..00000000 --- a/data/default/run-computation/results_line_chart.json +++ /dev/null @@ -1,12 +0,0 @@ -[ - { - "x": [1, 2, 3, 4], - "y": [10, 15, 13, 17], - "type": "scatter" - }, - { - "x": [1, 2, 3, 4], - "y": [16, 5, 11, 9], - "type": "scatter" - } -] \ No newline at end of file diff --git a/data/default/run-computation/results_table.json b/data/default/run-computation/results_table.json deleted file mode 100644 index 1aa06d36..00000000 --- a/data/default/run-computation/results_table.json +++ /dev/null @@ -1,42 +0,0 @@ -[ - { - "id": 0, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 1, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 2, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 3, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - }, - { - "id": 4, - "name": "value", - "unitType": "value", - "lowerBound": 0, - "upperBound": 1, - "constraints": "value" - } -] \ No newline at end of file diff --git a/data/default/monitor-activities/experiment_detail.json b/data/experiment_detail.json similarity index 100% rename from data/default/monitor-activities/experiment_detail.json rename to data/experiment_detail.json diff --git a/data/default/monitor-activities/experiments.json b/data/experiments.json similarity index 100% rename from data/default/monitor-activities/experiments.json rename to data/experiments.json diff --git a/data/default/compare-data/scenarios.json b/data/scenarios.json similarity index 100% rename from data/default/compare-data/scenarios.json rename to data/scenarios.json